Query 010390
Match_columns 512
No_of_seqs 761 out of 3964
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 05:46:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 5.7E-47 1.9E-51 363.4 37.5 290 43-394 101-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 7.6E-47 2.6E-51 349.8 36.3 300 35-394 17-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 3.3E-46 1.1E-50 349.2 37.4 291 41-392 46-340 (340)
4 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-45 3.6E-50 346.4 37.8 311 41-400 6-340 (345)
5 2ynn_A Coatomer subunit beta'; 100.0 6.8E-45 2.3E-49 334.7 36.5 295 42-396 5-303 (304)
6 2pbi_B Guanine nucleotide-bind 100.0 5.4E-45 1.9E-49 342.5 36.2 292 41-392 55-354 (354)
7 3frx_A Guanine nucleotide-bind 100.0 1.5E-44 5.2E-49 334.6 38.6 300 38-396 5-318 (319)
8 4gqb_B Methylosome protein 50; 100.0 1.5E-45 5.1E-50 343.6 32.0 303 45-397 25-333 (344)
9 3iz6_a 40S ribosomal protein R 100.0 3.7E-46 1.3E-50 354.3 28.0 306 40-397 56-377 (380)
10 1nr0_A Actin interacting prote 100.0 2.5E-44 8.5E-49 363.0 39.3 333 43-397 140-569 (611)
11 4g56_B MGC81050 protein; prote 100.0 8.2E-45 2.8E-49 341.5 32.9 299 42-397 34-345 (357)
12 4ery_A WD repeat-containing pr 100.0 6.2E-44 2.1E-48 330.1 38.1 296 40-394 13-311 (312)
13 1nr0_A Actin interacting prote 100.0 2.7E-44 9.3E-49 362.7 37.7 333 41-399 50-527 (611)
14 2xzm_R RACK1; ribosome, transl 100.0 2.6E-43 9E-48 330.1 39.7 307 40-397 11-342 (343)
15 2hes_X YDR267CP; beta-propelle 100.0 5.6E-43 1.9E-47 325.7 37.4 302 41-395 5-328 (330)
16 1erj_A Transcriptional repress 100.0 7.7E-43 2.6E-47 333.0 34.9 308 47-396 61-390 (393)
17 4aow_A Guanine nucleotide-bind 100.0 1.6E-41 5.5E-46 318.0 39.8 304 38-397 26-339 (340)
18 2ymu_A WD-40 repeat protein; u 100.0 1.6E-41 5.3E-46 341.7 36.8 364 44-451 10-405 (577)
19 2ynn_A Coatomer subunit beta'; 100.0 3.3E-41 1.1E-45 310.0 32.7 260 100-403 5-267 (304)
20 3zwl_B Eukaryotic translation 100.0 1.9E-40 6.6E-45 314.2 38.4 308 41-401 23-352 (369)
21 4e54_B DNA damage-binding prot 100.0 9.2E-42 3.1E-46 330.3 28.2 301 44-399 113-434 (435)
22 2pm9_A Protein WEB1, protein t 100.0 2.9E-41 9.9E-46 325.5 30.2 312 49-401 11-343 (416)
23 3dm0_A Maltose-binding peripla 100.0 2.6E-40 9E-45 339.2 37.7 298 42-394 374-692 (694)
24 2ymu_A WD-40 repeat protein; u 100.0 4.8E-40 1.7E-44 330.9 38.6 284 41-392 294-577 (577)
25 1vyh_C Platelet-activating fac 100.0 1.7E-40 5.7E-45 318.5 31.9 255 101-401 101-375 (410)
26 1sq9_A Antiviral protein SKI8; 100.0 3.7E-40 1.3E-44 315.7 33.8 313 41-397 7-397 (397)
27 3ei3_B DNA damage-binding prot 100.0 1.4E-39 4.8E-44 310.1 36.9 297 40-395 63-382 (383)
28 1gxr_A ESG1, transducin-like e 100.0 3.4E-39 1.2E-43 301.7 38.3 288 44-394 45-336 (337)
29 3i2n_A WD repeat-containing pr 100.0 1.7E-39 5.7E-44 306.4 33.6 304 42-398 10-356 (357)
30 1k8k_C P40, ARP2/3 complex 41 100.0 9.1E-40 3.1E-44 310.1 31.6 308 47-398 5-364 (372)
31 3ow8_A WD repeat-containing pr 100.0 8E-40 2.7E-44 302.7 30.1 256 101-402 25-286 (321)
32 4gqb_B Methylosome protein 50; 100.0 1.3E-39 4.6E-44 303.4 31.7 251 49-353 81-333 (344)
33 3k26_A Polycomb protein EED; W 100.0 1.7E-39 5.6E-44 307.5 31.5 309 44-395 12-366 (366)
34 3dwl_C Actin-related protein 2 100.0 3.9E-40 1.3E-44 313.3 26.1 303 47-393 8-377 (377)
35 4g56_B MGC81050 protein; prote 100.0 1.9E-39 6.6E-44 304.9 30.3 288 53-401 8-307 (357)
36 1r5m_A SIR4-interacting protei 100.0 5.5E-39 1.9E-43 310.3 34.1 325 44-394 39-424 (425)
37 1got_B GT-beta; complex (GTP-b 100.0 1.4E-38 4.8E-43 297.5 34.2 260 99-401 46-307 (340)
38 3vl1_A 26S proteasome regulato 100.0 1.6E-38 5.3E-43 306.8 35.5 296 51-397 57-367 (420)
39 4a11_B DNA excision repair pro 100.0 2.8E-38 9.7E-43 303.7 37.1 328 40-401 33-371 (408)
40 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-38 5.8E-43 347.4 37.9 369 43-462 608-1115(1249)
41 2pm9_A Protein WEB1, protein t 100.0 6.3E-40 2.1E-44 316.2 23.3 302 47-396 64-415 (416)
42 4h5i_A Guanine nucleotide-exch 100.0 1.1E-39 3.8E-44 307.3 23.5 298 51-397 15-345 (365)
43 2pm7_B Protein transport prote 100.0 4.4E-38 1.5E-42 288.2 32.9 261 44-351 3-285 (297)
44 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-38 5.4E-43 297.6 30.4 261 99-397 6-285 (345)
45 4gga_A P55CDC, cell division c 100.0 1.8E-37 6E-42 298.9 37.5 289 53-401 108-401 (420)
46 3iz6_a 40S ribosomal protein R 100.0 5E-39 1.7E-43 305.2 26.1 309 100-462 58-374 (380)
47 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-37 6.6E-42 286.7 35.9 290 41-401 9-302 (313)
48 1gxr_A ESG1, transducin-like e 100.0 2.7E-38 9.1E-43 295.7 30.2 289 49-400 8-301 (337)
49 3gre_A Serine/threonine-protei 100.0 1.2E-38 4E-43 309.3 28.6 298 37-392 49-437 (437)
50 3v7d_B Cell division control p 100.0 2.3E-37 7.9E-42 302.6 37.6 328 42-418 113-443 (464)
51 2pbi_B Guanine nucleotide-bind 100.0 2.1E-37 7.1E-42 290.9 34.6 262 100-401 56-321 (354)
52 4aez_A CDC20, WD repeat-contai 100.0 1.8E-37 6E-42 297.2 34.8 297 42-401 83-386 (401)
53 2pm7_B Protein transport prote 100.0 3.2E-37 1.1E-41 282.4 35.0 256 101-394 2-284 (297)
54 3sfz_A APAF-1, apoptotic pepti 100.0 6E-38 2.1E-42 343.1 35.4 363 40-424 647-1194(1249)
55 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-37 4.8E-42 325.8 36.6 298 42-398 5-305 (814)
56 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-37 5.1E-42 291.9 31.5 315 44-401 5-343 (351)
57 4ggc_A P55CDC, cell division c 100.0 2E-36 6.8E-41 280.6 37.4 285 53-397 28-317 (318)
58 1yfq_A Cell cycle arrest prote 100.0 6.1E-37 2.1E-41 287.1 34.1 289 45-393 6-322 (342)
59 3vl1_A 26S proteasome regulato 100.0 5.8E-37 2E-41 295.8 34.4 300 60-395 104-419 (420)
60 2j04_B YDR362CP, TAU91; beta p 100.0 4.1E-38 1.4E-42 307.8 26.4 300 45-396 202-518 (524)
61 4ery_A WD repeat-containing pr 100.0 7.2E-37 2.5E-41 282.7 32.6 258 99-401 14-274 (312)
62 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-36 5.3E-41 294.9 36.4 284 43-402 111-398 (445)
63 3frx_A Guanine nucleotide-bind 100.0 6E-37 2.1E-41 283.6 31.1 253 40-352 55-318 (319)
64 2xzm_R RACK1; ribosome, transl 100.0 1.8E-36 6.2E-41 283.6 34.0 296 99-452 12-330 (343)
65 3mmy_A MRNA export factor; mRN 100.0 1.2E-36 4E-41 288.1 32.6 298 41-396 30-347 (368)
66 3bg1_A Protein SEC13 homolog; 100.0 2.2E-37 7.5E-42 286.1 26.8 259 43-350 6-292 (316)
67 2hes_X YDR267CP; beta-propelle 100.0 1.5E-36 5E-41 282.4 30.6 264 99-397 5-282 (330)
68 1p22_A F-BOX/WD-repeat protein 100.0 1.9E-36 6.6E-41 293.2 32.7 284 46-401 129-420 (435)
69 1pgu_A Actin interacting prote 100.0 2.8E-36 9.4E-41 305.9 35.3 330 41-395 151-614 (615)
70 2oaj_A Protein SNI1; WD40 repe 100.0 9.5E-37 3.3E-41 318.6 32.5 227 43-306 10-243 (902)
71 3bg1_A Protein SEC13 homolog; 100.0 3.5E-37 1.2E-41 284.8 25.7 255 103-394 8-292 (316)
72 3dw8_B Serine/threonine-protei 100.0 1.1E-36 3.7E-41 296.4 30.3 314 48-394 26-445 (447)
73 1erj_A Transcriptional repress 100.0 2.9E-36 1E-40 287.5 32.2 252 105-401 61-347 (393)
74 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-36 9.6E-41 315.0 33.4 358 49-417 97-631 (902)
75 2aq5_A Coronin-1A; WD40 repeat 100.0 5.6E-36 1.9E-40 287.0 27.8 289 59-399 40-346 (402)
76 1pgu_A Actin interacting prote 100.0 4.1E-35 1.4E-39 297.2 34.8 311 44-416 12-347 (615)
77 3jrp_A Fusion protein of prote 100.0 1.5E-35 5.2E-40 281.7 29.3 266 40-353 1-289 (379)
78 2j04_B YDR362CP, TAU91; beta p 100.0 3.4E-36 1.2E-40 294.3 25.3 280 49-396 132-429 (524)
79 3jrp_A Fusion protein of prote 100.0 2.2E-35 7.7E-40 280.5 28.9 258 101-397 4-289 (379)
80 4aow_A Guanine nucleotide-bind 100.0 7.5E-35 2.6E-39 272.6 30.7 301 99-463 29-337 (340)
81 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-34 6.8E-39 280.1 34.7 285 40-396 149-443 (445)
82 3ei3_B DNA damage-binding prot 100.0 1.7E-34 5.7E-39 275.0 32.0 258 99-401 64-345 (383)
83 3v7d_B Cell division control p 100.0 2.2E-34 7.7E-39 281.5 32.1 284 40-392 152-460 (464)
84 4aez_A CDC20, WD repeat-contai 100.0 2.8E-34 9.5E-39 274.9 29.4 263 48-370 132-399 (401)
85 4e54_B DNA damage-binding prot 100.0 5.3E-35 1.8E-39 282.9 24.3 297 101-464 112-431 (435)
86 2j04_A TAU60, YPL007P, hypothe 100.0 4.1E-35 1.4E-39 278.9 22.4 275 41-394 6-296 (588)
87 3dw8_B Serine/threonine-protei 100.0 2.5E-34 8.4E-39 279.8 28.3 288 106-400 26-378 (447)
88 3dm0_A Maltose-binding peripla 100.0 3.5E-34 1.2E-38 293.8 30.0 301 101-452 375-683 (694)
89 3mkq_A Coatomer beta'-subunit; 100.0 1E-33 3.5E-38 296.5 33.9 297 40-397 45-388 (814)
90 3zwl_B Eukaryotic translation 100.0 1.7E-33 6E-38 266.4 32.3 303 99-463 23-346 (369)
91 3jro_A Fusion protein of prote 100.0 2.9E-34 9.8E-39 296.0 27.2 263 43-353 2-287 (753)
92 3vu4_A KMHSV2; beta-propeller 100.0 4.9E-33 1.7E-37 261.2 32.9 296 44-398 13-339 (355)
93 2xyi_A Probable histone-bindin 100.0 2.1E-33 7.1E-38 271.2 30.9 267 101-398 121-413 (430)
94 1sq9_A Antiviral protein SKI8; 100.0 1.3E-33 4.5E-38 270.2 28.8 267 101-403 9-330 (397)
95 3gre_A Serine/threonine-protei 100.0 1.2E-34 4E-39 281.2 21.4 286 61-403 35-367 (437)
96 1yfq_A Cell cycle arrest prote 100.0 4.5E-33 1.5E-37 260.8 31.5 252 103-402 6-289 (342)
97 3odt_A Protein DOA1; ubiquitin 100.0 6.4E-33 2.2E-37 256.3 31.8 252 99-401 9-261 (313)
98 3k26_A Polycomb protein EED; W 100.0 1.4E-33 4.7E-38 266.8 27.1 277 49-350 68-365 (366)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-32 4.9E-37 267.1 33.9 302 49-395 3-391 (450)
100 3dwl_C Actin-related protein 2 100.0 2E-34 6.7E-39 273.9 20.0 253 104-395 7-281 (377)
101 1r5m_A SIR4-interacting protei 100.0 3.1E-33 1E-37 270.0 28.2 257 104-397 41-363 (425)
102 3i2n_A WD repeat-containing pr 100.0 1.6E-33 5.3E-38 265.5 25.2 261 101-400 11-296 (357)
103 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-33 7.8E-38 266.0 26.0 252 105-395 5-274 (372)
104 2xyi_A Probable histone-bindin 100.0 9E-33 3.1E-37 266.7 30.4 266 44-351 122-410 (430)
105 4gga_A P55CDC, cell division c 100.0 3.9E-32 1.3E-36 261.6 33.7 265 44-367 141-410 (420)
106 3jro_A Fusion protein of prote 100.0 3.9E-33 1.3E-37 287.5 27.1 258 101-397 2-287 (753)
107 4gq1_A NUP37; propeller, trans 100.0 2.3E-33 7.7E-38 267.3 21.9 280 62-394 98-388 (393)
108 3lrv_A PRE-mRNA-splicing facto 100.0 8.2E-33 2.8E-37 258.8 23.2 272 62-396 45-334 (343)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 7.3E-32 2.5E-36 258.4 27.9 255 111-398 37-302 (402)
110 4h5i_A Guanine nucleotide-exch 100.0 1.6E-31 5.3E-36 251.7 29.6 260 44-352 67-344 (365)
111 3mmy_A MRNA export factor; mRN 100.0 1.4E-31 4.9E-36 253.1 28.8 256 99-401 30-310 (368)
112 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-32 5.9E-37 261.0 20.6 249 48-384 83-350 (588)
113 1l0q_A Surface layer protein; 100.0 6E-31 2.1E-35 251.1 31.6 274 66-402 3-282 (391)
114 3bws_A Protein LP49; two-domai 100.0 5.1E-31 1.8E-35 255.2 30.8 286 51-395 123-432 (433)
115 4a11_B DNA excision repair pro 100.0 1.2E-30 4E-35 250.5 32.8 306 47-395 96-405 (408)
116 4ggc_A P55CDC, cell division c 100.0 5.3E-30 1.8E-34 237.3 32.3 251 44-352 61-316 (318)
117 1p22_A F-BOX/WD-repeat protein 100.0 5.8E-30 2E-34 247.7 28.9 239 104-397 129-367 (435)
118 3vu4_A KMHSV2; beta-propeller 100.0 3.4E-30 1.2E-34 241.9 24.8 243 101-398 12-274 (355)
119 1l0q_A Surface layer protein; 100.0 1.4E-28 4.7E-33 234.8 33.6 293 41-398 23-345 (391)
120 3bws_A Protein LP49; two-domai 100.0 5E-29 1.7E-33 241.3 28.5 252 101-401 116-396 (433)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-28 7E-33 237.9 31.6 258 47-352 99-392 (450)
122 4gq1_A NUP37; propeller, trans 100.0 2.1E-30 7.1E-35 246.9 16.8 321 51-452 16-380 (393)
123 3lrv_A PRE-mRNA-splicing facto 100.0 9.8E-30 3.3E-34 237.9 20.5 244 115-397 43-294 (343)
124 2w18_A PALB2, fancn, partner a 100.0 2.6E-28 8.9E-33 218.1 27.2 284 54-393 40-355 (356)
125 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-28 3.9E-33 231.2 25.4 312 102-462 5-336 (351)
126 1nir_A Nitrite reductase; hemo 100.0 6.8E-27 2.3E-31 230.5 32.1 297 53-403 181-522 (543)
127 1nir_A Nitrite reductase; hemo 100.0 6.5E-27 2.2E-31 230.7 28.1 291 62-399 146-462 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.4E-27 8.1E-32 227.0 23.8 281 56-398 65-390 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 2E-26 6.8E-31 220.6 25.3 265 44-375 111-409 (415)
130 2w18_A PALB2, fancn, partner a 99.9 8.1E-27 2.8E-31 208.5 19.1 200 52-303 113-355 (356)
131 2ecf_A Dipeptidyl peptidase IV 99.9 7.5E-26 2.6E-30 234.3 27.0 303 50-395 36-413 (741)
132 3u4y_A Uncharacterized protein 99.9 1.9E-24 6.4E-29 201.1 27.7 284 62-399 6-308 (331)
133 1ri6_A Putative isomerase YBHE 99.9 1.3E-24 4.5E-29 203.2 24.7 287 66-398 6-313 (343)
134 2ojh_A Uncharacterized protein 99.9 2.5E-24 8.7E-29 196.6 24.1 260 70-386 17-293 (297)
135 1k32_A Tricorn protease; prote 99.9 2.6E-24 9E-29 230.1 27.0 314 44-398 46-464 (1045)
136 1xfd_A DIP, dipeptidyl aminope 99.9 3.1E-24 1.1E-28 221.5 25.7 309 51-396 17-394 (723)
137 2ecf_A Dipeptidyl peptidase IV 99.9 5.2E-23 1.8E-27 213.0 32.3 285 53-397 111-461 (741)
138 2z3z_A Dipeptidyl aminopeptida 99.9 7.6E-24 2.6E-28 217.9 24.0 308 53-397 28-393 (706)
139 2z3z_A Dipeptidyl aminopeptida 99.9 9.2E-23 3.1E-27 209.9 27.9 287 51-397 82-437 (706)
140 1pby_B Quinohemoprotein amine 99.9 3.9E-23 1.3E-27 192.6 21.6 272 66-402 2-317 (337)
141 3hfq_A Uncharacterized protein 99.9 1.5E-22 5.1E-27 189.6 25.4 291 74-401 15-325 (347)
142 1xfd_A DIP, dipeptidyl aminope 99.9 2.6E-22 8.8E-27 207.2 28.7 305 44-397 51-445 (723)
143 1ri6_A Putative isomerase YBHE 99.9 4.1E-22 1.4E-26 186.2 26.7 283 48-375 35-334 (343)
144 3u4y_A Uncharacterized protein 99.9 6.3E-22 2.1E-26 184.0 26.7 253 49-353 39-306 (331)
145 3vgz_A Uncharacterized protein 99.9 2E-22 6.9E-27 189.2 22.8 259 108-401 40-309 (353)
146 3vgz_A Uncharacterized protein 99.9 1.6E-21 5.4E-26 183.0 28.3 275 49-385 39-334 (353)
147 3scy_A Hypothetical bacterial 99.9 6E-21 2.1E-25 179.7 31.6 306 63-401 11-345 (361)
148 1k32_A Tricorn protease; prote 99.9 3.7E-22 1.3E-26 213.5 25.8 280 49-397 294-639 (1045)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 1.9E-21 6.5E-26 186.6 26.4 219 51-306 37-279 (434)
150 2ojh_A Uncharacterized protein 99.9 5.4E-22 1.8E-26 181.1 21.6 240 45-342 36-293 (297)
151 3o4h_A Acylamino-acid-releasin 99.9 5.5E-22 1.9E-26 199.1 21.6 273 49-395 20-315 (582)
152 1jmx_B Amine dehydrogenase; ox 99.9 2.4E-21 8.3E-26 181.4 23.4 279 62-401 8-331 (349)
153 3scy_A Hypothetical bacterial 99.9 5.8E-20 2E-24 172.9 31.0 282 49-372 48-360 (361)
154 3hfq_A Uncharacterized protein 99.9 1.8E-20 6.3E-25 175.3 26.8 260 47-350 36-316 (347)
155 3pe7_A Oligogalacturonate lyas 99.9 2.9E-21 9.8E-26 183.8 19.6 292 43-394 23-381 (388)
156 3o4h_A Acylamino-acid-releasin 99.9 2.9E-21 1E-25 193.9 20.2 239 108-400 21-279 (582)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 2E-20 6.7E-25 179.5 24.4 179 49-254 91-280 (434)
158 1z68_A Fibroblast activation p 99.9 1.2E-20 4.2E-25 194.4 23.4 292 55-395 20-391 (719)
159 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-19 3.7E-24 171.1 21.6 254 107-396 38-342 (365)
160 4a5s_A Dipeptidyl peptidase 4 99.8 3.8E-19 1.3E-23 183.3 26.3 295 49-401 15-359 (740)
161 1z68_A Fibroblast activation p 99.8 6.5E-19 2.2E-23 181.5 27.1 299 52-401 61-449 (719)
162 1pby_B Quinohemoprotein amine 99.8 1.8E-19 6.2E-24 167.7 18.9 238 52-354 35-313 (337)
163 3c5m_A Oligogalacturonate lyas 99.8 2.7E-19 9.3E-24 170.6 19.7 282 51-398 36-387 (396)
164 2oiz_A Aromatic amine dehydrog 99.8 1.4E-18 4.8E-23 162.7 21.0 284 63-401 13-342 (361)
165 3pe7_A Oligogalacturonate lyas 99.8 5.2E-18 1.8E-22 161.3 22.6 255 101-399 23-333 (388)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.2E-18 4.2E-23 163.9 17.1 254 49-352 38-342 (365)
167 3azo_A Aminopeptidase; POP fam 99.8 1.6E-17 5.4E-22 169.6 25.7 293 45-400 18-374 (662)
168 1jmx_B Amine dehydrogenase; ox 99.8 4.7E-18 1.6E-22 159.0 19.2 241 113-401 4-290 (349)
169 4a5s_A Dipeptidyl peptidase 4 99.8 1.3E-16 4.5E-21 164.3 28.8 325 44-401 50-455 (740)
170 1q7f_A NHL, brain tumor CG1071 99.8 3.8E-16 1.3E-20 141.6 27.8 245 106-397 27-282 (286)
171 1q7f_A NHL, brain tumor CG1071 99.8 1.4E-15 4.8E-20 137.8 29.6 251 48-352 27-281 (286)
172 3fvz_A Peptidyl-glycine alpha- 99.7 7.2E-16 2.5E-20 142.6 26.9 263 108-396 23-323 (329)
173 2dg1_A DRP35, lactonase; beta 99.7 7.4E-16 2.5E-20 143.1 27.0 274 51-385 6-300 (333)
174 2oiz_A Aromatic amine dehydrog 99.7 5.4E-16 1.8E-20 145.1 24.1 282 44-375 45-359 (361)
175 3fvz_A Peptidyl-glycine alpha- 99.7 1.3E-15 4.4E-20 140.9 26.0 257 50-352 23-323 (329)
176 2xdw_A Prolyl endopeptidase; a 99.7 2.3E-15 7.7E-20 154.5 28.9 255 106-397 122-416 (710)
177 3c5m_A Oligogalacturonate lyas 99.7 3.4E-17 1.2E-21 156.0 14.2 259 111-398 38-332 (396)
178 1qks_A Cytochrome CD1 nitrite 99.7 9.3E-15 3.2E-19 143.6 31.6 298 53-403 199-546 (567)
179 2z2n_A Virginiamycin B lyase; 99.7 6.9E-14 2.4E-18 127.4 35.4 287 46-397 10-297 (299)
180 2gop_A Trilobed protease; beta 99.7 4.2E-15 1.4E-19 138.8 25.5 252 64-397 23-332 (347)
181 2bkl_A Prolyl endopeptidase; m 99.7 1E-15 3.5E-20 156.6 22.8 284 62-398 76-400 (695)
182 3dsm_A Uncharacterized protein 99.7 1.2E-14 4.2E-19 134.1 26.8 278 73-402 15-308 (328)
183 3azo_A Aminopeptidase; POP fam 99.7 1.9E-15 6.6E-20 154.1 23.0 244 62-353 87-371 (662)
184 3e5z_A Putative gluconolactona 99.7 8.7E-15 3E-19 133.3 24.6 252 101-400 20-291 (296)
185 1rwi_B Serine/threonine-protei 99.7 5.5E-14 1.9E-18 126.1 26.8 243 110-399 25-268 (270)
186 2xdw_A Prolyl endopeptidase; a 99.6 3.5E-14 1.2E-18 145.7 26.4 246 49-353 123-416 (710)
187 2mad_H Methylamine dehydrogena 99.6 3.2E-13 1.1E-17 126.2 30.5 283 62-401 29-356 (373)
188 2dg1_A DRP35, lactonase; beta 99.6 3.1E-13 1E-17 125.3 29.5 249 41-341 35-300 (333)
189 1rwi_B Serine/threonine-protei 99.6 7.5E-14 2.6E-18 125.2 24.6 242 52-354 25-267 (270)
190 1qks_A Cytochrome CD1 nitrite 99.6 2.4E-13 8.3E-18 133.5 28.6 289 62-396 164-478 (567)
191 2qc5_A Streptogramin B lactona 99.6 2.8E-12 9.7E-17 116.7 33.9 281 49-394 18-299 (300)
192 2bkl_A Prolyl endopeptidase; m 99.6 1.5E-14 5.2E-19 147.9 20.7 248 48-354 118-400 (695)
193 2gop_A Trilobed protease; beta 99.6 9.4E-14 3.2E-18 129.6 24.0 223 52-350 60-330 (347)
194 3e5z_A Putative gluconolactona 99.6 1.8E-13 6.2E-18 124.5 25.2 238 49-353 26-288 (296)
195 3sjl_D Methylamine dehydrogena 99.6 1.7E-13 5.9E-18 126.1 21.4 284 62-404 41-372 (386)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 3.6E-12 1.2E-16 117.0 27.9 247 107-395 16-299 (314)
197 2z2n_A Virginiamycin B lyase; 99.6 1.4E-11 4.9E-16 112.0 31.6 244 106-397 12-256 (299)
198 3no2_A Uncharacterized protein 99.6 9.6E-13 3.3E-17 117.7 23.1 220 119-383 4-231 (276)
199 1yr2_A Prolyl oligopeptidase; 99.6 4.3E-13 1.5E-17 138.1 23.5 285 62-398 115-444 (741)
200 3no2_A Uncharacterized protein 99.5 2.1E-12 7.2E-17 115.5 23.4 221 63-338 3-230 (276)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 8.5E-12 2.9E-16 114.4 27.7 248 51-352 18-300 (314)
202 3dsm_A Uncharacterized protein 99.5 1.7E-12 5.8E-17 119.7 21.4 240 52-354 45-304 (328)
203 3c75_H MADH, methylamine dehyd 99.5 1.7E-12 5.7E-17 121.8 19.5 285 62-402 81-409 (426)
204 2qc5_A Streptogramin B lactona 99.5 1.9E-10 6.5E-15 104.5 31.6 243 107-397 18-261 (300)
205 2mad_H Methylamine dehydrogena 99.5 1.1E-10 3.9E-15 109.0 29.4 259 55-355 70-354 (373)
206 1xip_A Nucleoporin NUP159; bet 99.5 1.8E-12 6.2E-17 119.9 16.9 192 52-293 39-232 (388)
207 1yr2_A Prolyl oligopeptidase; 99.5 6E-12 2E-16 129.6 22.6 244 52-353 164-443 (741)
208 3hrp_A Uncharacterized protein 99.4 6E-11 2E-15 112.5 26.5 244 109-394 131-409 (409)
209 3hrp_A Uncharacterized protein 99.4 3.6E-11 1.2E-15 114.0 24.8 252 53-349 133-408 (409)
210 3g4e_A Regucalcin; six bladed 99.4 2.5E-10 8.7E-15 103.6 27.4 239 107-385 11-263 (297)
211 2qe8_A Uncharacterized protein 99.4 6.8E-12 2.3E-16 116.5 16.9 274 51-392 17-318 (343)
212 3iuj_A Prolyl endopeptidase; h 99.4 2E-11 6.7E-16 124.6 21.3 251 106-399 126-409 (693)
213 3g4e_A Regucalcin; six bladed 99.4 3.2E-10 1.1E-14 102.9 26.0 230 52-339 14-260 (297)
214 3dr2_A Exported gluconolactona 99.4 1.2E-10 4E-15 106.3 22.9 242 101-389 37-301 (305)
215 3iuj_A Prolyl endopeptidase; h 99.4 6.8E-11 2.3E-15 120.6 22.6 244 48-353 126-407 (693)
216 1mda_H Methylamine dehydrogena 99.4 2.4E-11 8.2E-16 112.2 17.4 264 76-403 47-354 (368)
217 1xip_A Nucleoporin NUP159; bet 99.4 1.2E-11 4.2E-16 114.3 15.4 175 110-337 39-230 (388)
218 3sjl_D Methylamine dehydrogena 99.4 2.3E-10 7.8E-15 105.4 23.5 251 55-354 82-366 (386)
219 2ghs_A AGR_C_1268P; regucalcin 99.3 2E-09 6.7E-14 99.0 27.9 233 110-386 50-294 (326)
220 3c75_H MADH, methylamine dehyd 99.3 2.7E-10 9.1E-15 107.0 20.5 252 55-355 122-406 (426)
221 3dr2_A Exported gluconolactona 99.3 6.6E-10 2.3E-14 101.3 22.5 228 50-342 44-298 (305)
222 2ghs_A AGR_C_1268P; regucalcin 99.3 2.4E-09 8.3E-14 98.4 26.1 226 54-339 52-290 (326)
223 2ece_A 462AA long hypothetical 99.2 1.4E-08 4.8E-13 94.1 25.4 230 118-383 93-399 (462)
224 2ece_A 462AA long hypothetical 99.2 1.6E-08 5.6E-13 93.7 25.0 241 63-339 93-399 (462)
225 2qe8_A Uncharacterized protein 99.1 1.7E-09 5.8E-14 100.3 17.1 245 48-348 64-318 (343)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.3E-08 4.6E-13 95.6 22.2 289 64-401 52-343 (376)
227 1mda_H Methylamine dehydrogena 99.1 2.3E-09 8E-14 98.9 15.3 260 55-373 69-366 (368)
228 1npe_A Nidogen, entactin; glyc 99.1 9.2E-08 3.1E-12 85.1 25.3 257 65-375 1-262 (267)
229 1yiq_A Quinohemoprotein alcoho 99.1 4.4E-09 1.5E-13 106.5 17.5 325 65-403 70-513 (689)
230 1kb0_A Quinohemoprotein alcoho 99.0 2.3E-09 8E-14 108.3 15.0 324 65-403 77-515 (677)
231 1kb0_A Quinohemoprotein alcoho 99.0 1E-08 3.5E-13 103.6 19.5 294 64-395 127-567 (677)
232 2hz6_A Endoplasmic reticulum t 99.0 2.8E-10 9.6E-15 106.4 5.9 223 119-397 8-238 (369)
233 1yiq_A Quinohemoprotein alcoho 99.0 2.4E-08 8.3E-13 101.1 19.0 287 64-383 120-537 (689)
234 2hz6_A Endoplasmic reticulum t 98.9 1.7E-10 5.8E-15 108.0 1.8 258 64-395 8-279 (369)
235 1fwx_A Nitrous oxide reductase 98.9 3.8E-08 1.3E-12 94.6 17.8 276 62-353 98-433 (595)
236 4a2l_A BT_4663, two-component 98.9 4.7E-06 1.6E-10 86.5 33.7 292 53-400 175-485 (795)
237 3hxj_A Pyrrolo-quinoline quino 98.9 4.6E-08 1.6E-12 90.1 16.5 220 120-397 107-326 (330)
238 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.5E-07 5E-12 88.5 20.2 267 64-392 102-375 (376)
239 1npe_A Nidogen, entactin; glyc 98.9 6.6E-07 2.3E-11 79.5 23.3 235 121-402 2-245 (267)
240 4a2l_A BT_4663, two-component 98.9 4.7E-06 1.6E-10 86.5 32.8 299 51-398 215-529 (795)
241 2p4o_A Hypothetical protein; p 98.9 1.2E-05 4E-10 72.9 31.5 240 51-342 32-279 (306)
242 3hxj_A Pyrrolo-quinoline quino 98.9 2.3E-08 8E-13 92.0 13.3 261 62-400 28-288 (330)
243 1fwx_A Nitrous oxide reductase 98.9 6.3E-08 2.2E-12 93.1 16.2 242 119-401 100-437 (595)
244 2fp8_A Strictosidine synthase; 98.8 6.7E-07 2.3E-11 81.9 22.0 243 110-396 20-314 (322)
245 2fp8_A Strictosidine synthase; 98.8 1.9E-06 6.5E-11 78.9 24.4 254 51-352 19-314 (322)
246 2iwa_A Glutamine cyclotransfer 98.8 8.8E-07 3E-11 77.1 19.0 212 141-397 10-239 (266)
247 2iwa_A Glutamine cyclotransfer 98.7 9.4E-07 3.2E-11 76.9 16.0 204 110-352 22-238 (266)
248 1kv9_A Type II quinohemoprotei 98.6 7.3E-07 2.5E-11 90.0 16.8 324 65-403 66-496 (668)
249 3nol_A Glutamine cyclotransfer 98.6 2.3E-06 8E-11 73.5 17.0 194 142-382 33-243 (262)
250 3v64_C Agrin; beta propeller, 98.6 0.00014 4.8E-09 67.0 30.5 234 62-354 42-278 (349)
251 3v9f_A Two-component system se 98.6 0.00011 3.7E-09 76.1 32.8 299 52-399 259-572 (781)
252 2p4o_A Hypothetical protein; p 98.6 0.00012 4.2E-09 66.1 28.1 239 109-385 32-278 (306)
253 3nok_A Glutaminyl cyclase; bet 98.6 1.1E-05 3.7E-10 69.4 19.3 194 141-382 44-253 (268)
254 3nol_A Glutamine cyclotransfer 98.5 1.7E-06 6E-11 74.3 14.4 191 110-341 44-245 (262)
255 3v9f_A Two-component system se 98.5 0.0002 6.8E-09 74.1 32.4 298 52-400 212-529 (781)
256 3nok_A Glutaminyl cyclase; bet 98.5 2.1E-06 7.1E-11 73.7 14.3 189 109-340 55-254 (268)
257 3v65_B Low-density lipoprotein 98.5 9E-05 3.1E-09 69.4 26.1 230 67-354 89-321 (386)
258 1ijq_A LDL receptor, low-densi 98.5 0.00058 2E-08 61.9 30.8 231 68-354 4-241 (316)
259 1k3i_A Galactose oxidase precu 98.5 1.3E-05 4.5E-10 81.0 21.7 288 62-384 194-530 (656)
260 2xe4_A Oligopeptidase B; hydro 98.5 4.3E-05 1.5E-09 78.4 25.2 252 106-398 170-461 (751)
261 3v64_C Agrin; beta propeller, 98.5 0.00015 5E-09 66.9 26.1 233 122-401 46-281 (349)
262 3mbr_X Glutamine cyclotransfer 98.4 1.8E-05 6E-10 67.5 17.8 194 142-382 11-222 (243)
263 1ijq_A LDL receptor, low-densi 98.4 0.0004 1.4E-08 63.0 28.1 237 122-401 3-244 (316)
264 1w6s_A Methanol dehydrogenase 98.4 2.3E-05 7.8E-10 77.4 20.7 329 65-403 62-511 (599)
265 2ad6_A Methanol dehydrogenase 98.4 1.1E-05 3.7E-10 79.8 18.4 276 120-403 115-502 (571)
266 3p5b_L Low density lipoprotein 98.4 0.0012 4E-08 62.0 31.7 232 67-354 85-323 (400)
267 4hw6_A Hypothetical protein, I 98.4 0.00011 3.8E-09 69.8 24.4 253 51-350 139-432 (433)
268 3tc9_A Hypothetical hydrolase; 98.4 9.6E-05 3.3E-09 70.2 23.5 250 52-350 138-429 (430)
269 1kv9_A Type II quinohemoprotei 98.4 1.7E-05 5.9E-10 80.0 19.1 257 65-355 117-492 (668)
270 3v65_B Low-density lipoprotein 98.4 0.00016 5.5E-09 67.7 24.4 234 121-401 88-324 (386)
271 1k3i_A Galactose oxidase precu 98.4 9.3E-06 3.2E-10 82.1 16.8 249 113-400 190-502 (656)
272 3mbr_X Glutamine cyclotransfer 98.4 9.6E-05 3.3E-09 62.9 20.0 199 48-294 16-223 (243)
273 3tc9_A Hypothetical hydrolase; 98.3 0.00017 5.9E-09 68.4 24.2 243 110-394 138-429 (430)
274 1flg_A Protein (quinoprotein e 98.3 9.5E-05 3.2E-09 73.1 22.8 279 120-403 117-524 (582)
275 2ad6_A Methanol dehydrogenase 98.3 3.3E-05 1.1E-09 76.3 18.8 73 65-147 115-193 (571)
276 4hw6_A Hypothetical protein, I 98.3 0.00051 1.7E-08 65.2 25.4 244 109-394 139-432 (433)
277 3sov_A LRP-6, low-density lipo 98.3 0.00036 1.2E-08 63.2 23.2 229 129-401 12-244 (318)
278 3qqz_A Putative uncharacterize 98.2 0.00043 1.5E-08 59.8 21.9 215 145-394 21-252 (255)
279 1flg_A Protein (quinoprotein e 98.2 0.00028 9.5E-09 69.8 22.4 83 295-383 465-548 (582)
280 3qqz_A Putative uncharacterize 98.2 0.0011 3.8E-08 57.2 23.0 219 45-302 21-250 (255)
281 3m0c_C LDL receptor, low-densi 98.2 0.0028 9.6E-08 64.7 29.5 207 107-354 422-635 (791)
282 3p5b_L Low density lipoprotein 98.2 0.0019 6.5E-08 60.6 26.6 238 121-401 84-326 (400)
283 1w6s_A Methanol dehydrogenase 98.1 0.00014 4.8E-09 71.8 19.3 53 331-383 483-535 (599)
284 2xe4_A Oligopeptidase B; hydro 98.1 0.00035 1.2E-08 71.7 21.6 200 152-393 175-398 (751)
285 2xbg_A YCF48-like protein; pho 98.1 0.0059 2E-07 55.5 29.7 274 50-393 35-320 (327)
286 2xzh_A Clathrin heavy chain 1; 98.1 0.0049 1.7E-07 54.3 27.0 278 66-400 37-337 (365)
287 3kya_A Putative phosphatase; s 98.1 0.0025 8.4E-08 60.8 25.3 267 58-354 143-478 (496)
288 3kya_A Putative phosphatase; s 98.1 0.0025 8.6E-08 60.7 25.2 263 110-401 140-481 (496)
289 3sov_A LRP-6, low-density lipo 98.1 0.0047 1.6E-07 55.8 26.0 226 74-354 12-241 (318)
290 4a0p_A LRP6, LRP-6, low-densit 97.9 0.025 8.4E-07 56.4 30.5 229 67-353 8-239 (628)
291 3m0c_C LDL receptor, low-densi 97.9 0.007 2.4E-07 61.8 26.5 237 122-401 397-638 (791)
292 3ei3_A DNA damage-binding prot 97.9 0.0062 2.1E-07 65.0 26.8 104 65-181 523-635 (1158)
293 1n7d_A LDL receptor, low-densi 97.9 9.7E-05 3.3E-09 74.8 12.1 228 129-402 385-621 (699)
294 1n7d_A LDL receptor, low-densi 97.8 0.00011 3.7E-09 74.5 11.9 204 109-353 406-616 (699)
295 4a0p_A LRP6, LRP-6, low-densit 97.8 0.018 6.3E-07 57.3 27.7 232 122-401 8-243 (628)
296 3s94_A LRP-6, low-density lipo 97.8 0.038 1.3E-06 54.9 31.1 298 51-397 84-425 (619)
297 2p9w_A MAL S 1 allergenic prot 97.7 0.013 4.3E-07 52.3 21.7 172 111-305 15-215 (334)
298 3amr_A 3-phytase; beta-propell 97.7 0.0066 2.2E-07 54.6 20.0 202 119-351 39-263 (355)
299 2p9w_A MAL S 1 allergenic prot 97.7 0.0024 8.2E-08 56.9 16.7 171 220-395 12-215 (334)
300 2ism_A Putative oxidoreductase 97.7 0.016 5.4E-07 53.3 22.9 246 109-383 31-333 (352)
301 3sre_A PON1, serum paraoxonase 97.6 0.033 1.1E-06 50.7 24.1 203 50-302 49-295 (355)
302 3s94_A LRP-6, low-density lipo 97.6 0.015 5.2E-07 57.8 23.8 230 128-401 16-249 (619)
303 3amr_A 3-phytase; beta-propell 97.6 0.019 6.4E-07 51.7 21.1 194 63-304 38-262 (355)
304 1bpo_A Protein (clathrin); cla 97.6 0.049 1.7E-06 50.2 29.1 278 66-400 36-336 (494)
305 2xzh_A Clathrin heavy chain 1; 97.5 0.038 1.3E-06 48.8 21.4 224 128-401 47-296 (365)
306 2ism_A Putative oxidoreductase 97.5 0.053 1.8E-06 49.7 23.6 104 52-170 32-153 (352)
307 3ei3_A DNA damage-binding prot 97.5 0.17 5.8E-06 54.2 30.3 99 286-392 844-952 (1158)
308 1bpo_A Protein (clathrin); cla 97.3 0.1 3.5E-06 48.1 22.1 226 128-401 46-295 (494)
309 2vpj_A Kelch-like protein 12; 97.2 0.061 2.1E-06 48.0 20.7 230 64-352 14-279 (301)
310 1zgk_A Kelch-like ECH-associat 97.2 0.072 2.5E-06 47.7 20.7 106 62-183 22-147 (308)
311 2vpj_A Kelch-like protein 12; 97.2 0.052 1.8E-06 48.5 19.5 109 285-400 159-283 (301)
312 2xn4_A Kelch-like protein 2; s 97.1 0.096 3.3E-06 46.7 21.2 62 119-183 61-134 (302)
313 3a9g_A Putative uncharacterize 97.1 0.16 5.4E-06 46.6 24.6 102 51-170 29-153 (354)
314 2g8s_A Glucose/sorbosone dehyd 97.1 0.16 5.6E-06 46.5 24.0 109 52-171 19-149 (353)
315 2xbg_A YCF48-like protein; pho 97.1 0.15 5.3E-06 46.0 29.9 240 108-398 35-281 (327)
316 3pbp_A Nucleoporin NUP82; beta 97.1 0.13 4.3E-06 47.5 20.7 154 227-391 27-208 (452)
317 3a9g_A Putative uncharacterize 97.1 0.17 5.9E-06 46.3 25.6 249 108-383 28-330 (354)
318 3ii7_A Kelch-like protein 7; p 97.0 0.17 5.9E-06 45.1 21.7 103 65-183 12-128 (306)
319 1xi4_A Clathrin heavy chain; a 97.0 0.23 8E-06 53.1 23.8 271 73-400 46-336 (1630)
320 2g8s_A Glucose/sorbosone dehyd 96.9 0.23 7.9E-06 45.4 23.6 60 109-169 18-87 (353)
321 3ii7_A Kelch-like protein 7; p 96.9 0.16 5.4E-06 45.4 20.3 230 122-400 14-277 (306)
322 2xn4_A Kelch-like protein 2; s 96.9 0.15 5.1E-06 45.5 19.9 109 285-400 155-281 (302)
323 3pbp_A Nucleoporin NUP82; beta 96.8 0.21 7.2E-06 46.0 19.4 168 117-302 29-209 (452)
324 3sre_A PON1, serum paraoxonase 96.8 0.31 1.1E-05 44.3 21.0 192 110-341 51-287 (355)
325 1zgk_A Kelch-like ECH-associat 96.7 0.22 7.5E-06 44.5 19.3 109 285-400 168-292 (308)
326 1tl2_A L10, protein (tachylect 96.3 0.16 5.6E-06 42.1 14.1 153 222-388 42-203 (236)
327 1cru_A Protein (soluble quinop 96.1 0.66 2.2E-05 44.0 19.7 114 220-339 26-162 (454)
328 1xi4_A Clathrin heavy chain; a 96.1 0.39 1.3E-05 51.5 19.0 228 128-401 46-295 (1630)
329 4asc_A Kelch repeat and BTB do 96.1 0.49 1.7E-05 42.4 18.1 109 285-400 148-282 (315)
330 3das_A Putative oxidoreductase 96.0 0.84 2.9E-05 41.3 27.1 254 106-383 29-326 (347)
331 3s25_A Hypothetical 7-bladed b 96.0 0.81 2.8E-05 40.6 22.5 213 114-394 58-292 (302)
332 4asc_A Kelch repeat and BTB do 95.9 0.94 3.2E-05 40.5 19.9 100 67-183 7-127 (315)
333 3ott_A Two-component system se 95.7 2.2 7.5E-05 43.7 31.8 247 109-394 191-447 (758)
334 2woz_A Kelch repeat and BTB do 95.7 1 3.5E-05 40.2 18.4 63 118-183 55-137 (318)
335 3das_A Putative oxidoreductase 95.4 1.4 4.9E-05 39.8 24.2 109 51-171 32-159 (347)
336 2woz_A Kelch repeat and BTB do 95.3 1.5 5E-05 39.3 18.7 110 284-400 157-292 (318)
337 3s25_A Hypothetical 7-bladed b 95.3 1.3 4.3E-05 39.4 17.1 140 227-397 110-257 (302)
338 2uvk_A YJHT; unknown function, 95.2 0.97 3.3E-05 41.2 17.0 54 297-354 286-345 (357)
339 3ott_A Two-component system se 94.8 4.3 0.00015 41.5 31.3 243 109-400 146-406 (758)
340 1tl2_A L10, protein (tachylect 94.7 0.97 3.3E-05 37.6 13.2 101 52-176 42-157 (236)
341 1cru_A Protein (soluble quinop 94.3 3.8 0.00013 38.8 28.4 105 52-171 28-163 (454)
342 2zwa_A Leucine carboxyl methyl 93.7 4.2 0.00014 41.0 18.5 107 63-183 396-523 (695)
343 2uvk_A YJHT; unknown function, 92.3 6.3 0.00021 35.7 16.6 23 64-86 65-97 (357)
344 2zwa_A Leucine carboxyl methyl 91.4 8.5 0.00029 38.8 17.3 116 231-353 500-637 (695)
345 2be1_A Serine/threonine-protei 88.8 13 0.00044 33.4 20.2 63 121-183 11-77 (339)
346 3sbq_A Nitrous-oxide reductase 88.4 0.96 3.3E-05 43.3 6.8 85 221-305 323-408 (638)
347 2wg3_C Hedgehog-interacting pr 87.6 12 0.0004 35.5 14.0 119 221-340 14-158 (463)
348 3q6k_A 43.2 kDa salivary prote 86.8 18 0.00063 33.0 20.6 162 221-383 152-342 (381)
349 4gq2_M Nucleoporin NUP120; bet 85.5 10 0.00034 39.8 13.4 38 109-146 236-273 (950)
350 3b7f_A Glycosyl hydrolase, BNR 78.1 41 0.0014 30.7 28.2 70 108-178 54-143 (394)
351 3sbq_A Nitrous-oxide reductase 77.6 4.3 0.00015 38.9 6.4 87 151-253 323-409 (638)
352 3b7f_A Glycosyl hydrolase, BNR 77.1 44 0.0015 30.5 25.9 67 109-176 115-202 (394)
353 4hvt_A Ritya.17583.B, post-pro 76.7 66 0.0023 32.4 25.0 100 294-394 318-429 (711)
354 2be1_A Serine/threonine-protei 76.5 5 0.00017 36.0 6.4 107 238-354 15-133 (339)
355 2wg3_C Hedgehog-interacting pr 71.6 69 0.0023 30.2 28.3 53 109-161 14-79 (463)
356 4gq2_M Nucleoporin NUP120; bet 68.9 1E+02 0.0036 32.2 15.1 38 221-259 236-273 (950)
357 3q6k_A 43.2 kDa salivary prote 68.8 69 0.0024 29.2 18.9 160 131-305 124-306 (381)
358 3qhy_B Beta-lactamase inhibito 68.1 59 0.002 28.1 24.0 224 110-397 25-248 (282)
359 4fhn_B Nucleoporin NUP120; pro 60.9 12 0.00042 40.2 6.4 38 109-146 238-275 (1139)
360 1sqj_A OXG-RCBH, oligoxylogluc 58.7 1.6E+02 0.0056 30.0 20.2 62 108-170 14-83 (789)
361 3qhy_B Beta-lactamase inhibito 55.7 1E+02 0.0034 26.6 28.3 240 52-374 25-264 (282)
362 3f7f_A Nucleoporin NUP120; nuc 53.6 61 0.0021 32.4 9.3 35 110-146 223-257 (729)
363 4fhn_B Nucleoporin NUP120; pro 43.2 10 0.00036 40.7 2.4 36 366-402 240-275 (1139)
364 3f7f_A Nucleoporin NUP120; nuc 42.8 23 0.0008 35.3 4.6 37 364-403 222-258 (729)
365 2cn3_A Xyloglucanase, beta-1,4 40.4 3E+02 0.01 27.7 24.2 61 109-170 23-91 (737)
366 3zwu_A Alkaline phosphatase PH 39.8 70 0.0024 31.2 7.4 57 324-382 479-548 (592)
367 4hvt_A Ritya.17583.B, post-pro 39.2 3.1E+02 0.011 27.5 18.8 56 340-397 318-383 (711)
368 3uc1_A DNA gyrase subunit A; D 38.8 2.1E+02 0.0071 25.4 30.2 257 65-351 3-279 (327)
369 1suu_A DNA gyrase subunit A; t 37.3 2.1E+02 0.0073 25.0 25.0 210 164-396 9-232 (312)
370 3zwu_A Alkaline phosphatase PH 36.5 81 0.0028 30.8 7.2 59 110-168 477-548 (592)
371 4a9v_A PHOX; hydrolase, beta-p 30.6 1.3E+02 0.0044 29.2 7.3 58 323-382 478-548 (592)
372 3kci_A Probable E3 ubiquitin-p 29.4 3.2E+02 0.011 24.7 29.2 303 64-391 9-341 (389)
373 2cn3_A Xyloglucanase, beta-1,4 27.2 4.9E+02 0.017 26.1 25.3 108 51-172 23-153 (737)
374 4a9v_A PHOX; hydrolase, beta-p 26.9 2.6E+02 0.0088 27.2 8.6 63 109-171 476-551 (592)
375 1sqj_A OXG-RCBH, oligoxylogluc 24.9 5.6E+02 0.019 26.0 16.2 158 220-385 14-190 (789)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.7e-47 Score=363.39 Aligned_cols=290 Identities=21% Similarity=0.331 Sum_probs=255.4
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
...+.||.++|++++| +|++.+||+|+.||.|+|||+.++.. ...+.+|.+.|++++|+|++++
T Consensus 101 ~~~l~gh~~~V~~~~~---~p~~~~l~s~s~Dg~i~vwd~~~~~~-------------~~~l~~h~~~V~~v~~~~~~~~ 164 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIF---HPVFSVMVSASEDATIKVWDYETGDF-------------ERTLKGHTDSVQDISFDHSGKL 164 (410)
T ss_dssp SCEEECCSSCEEEEEE---CSSSSEEEEEESSSCEEEEETTTCCC-------------CEEECCCSSCEEEEEECTTSSE
T ss_pred eEeecccCCcEEEEEE---cCCCCEEEEEeCCCeEEEEECCCCcE-------------EEEEeccCCcEEEEEEcCCCCE
Confidence 3456799999999999 99999999999999999999987643 6778899999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
|++|+.|++|+|||+.+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||++++...
T Consensus 165 l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~---------------- 227 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV---------------- 227 (410)
T ss_dssp EEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----------------
Confidence 9999999999999999999999999999999999999988 89999999999999999865432
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
..+.+|...|.++.+++++..+++ |+.|+.|++||+++..... .+..|...|.+++|
T Consensus 228 -----------~~~~~h~~~v~~~~~~~~g~~l~s-~s~D~~v~vwd~~~~~~~~-----------~~~~h~~~v~~~~~ 284 (410)
T 1vyh_C 228 -----------KTFTGHREWVRMVRPNQDGTLIAS-CSNDQTVRVWVVATKECKA-----------ELREHRHVVECISW 284 (410)
T ss_dssp -----------EEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCCEEE-----------EECCCSSCEEEEEE
T ss_pred -----------EEEeCCCccEEEEEECCCCCEEEE-EcCCCeEEEEECCCCceee-----------EecCCCceEEEEEE
Confidence 245578889999999999998887 4589999999999877654 35677788999999
Q ss_pred CCC--------------------CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390 283 DSN--------------------GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG 342 (512)
Q Consensus 283 ~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 342 (512)
+|+ +.+|++|+.|+.|++||+++. ..+..+.+| ...+.+++|+|++++|++|+.|+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGH--DNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--EEEEEEECC--SSCEEEEEECSSSSCEEEEETTT
T ss_pred cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC--ceEEEEECC--CCcEEEEEEcCCCCEEEEEeCCC
Confidence 996 678999999999999999763 345555555 35688899999999999999999
Q ss_pred CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 343 NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 343 ~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
.|++||+.+++. ...+.+|...|++++|+|++ .+|++|+.||+|++|+++
T Consensus 361 ~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~-~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 361 TLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEECCTTSCC-CEEEECCSSCEEEEEECSSS-SCEEEEETTSEEEEEC--
T ss_pred eEEEEECCCCce-EEEEcCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Confidence 999999988765 57889999999999999999 899999999999999863
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.6e-47 Score=349.85 Aligned_cols=300 Identities=21% Similarity=0.294 Sum_probs=256.6
Q ss_pred CceeeeeeEeecCCccCCcceEEEEEecC----CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCc
Q 010390 35 DFTEIGAVTVEHHGEETPPLAVSFCKTSK----NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA 110 (512)
Q Consensus 35 ~~~~~~~~~~~~~gh~~~v~~v~~~~~s~----~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 110 (512)
+....+.++...++|.+.|.+|+| +| ++.+||+|+.|+.|+|||+..... .....+.+|...
T Consensus 17 ~~~~~g~~~~~~~~H~~~V~~v~~---~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----------~~~~~l~gh~~~ 82 (321)
T 3ow8_A 17 GTNQYGILFKQEQAHDDAIWSVAW---GTNKKENSETVVTGSLDDLVKVWKWRDERL-----------DLQWSLEGHQLG 82 (321)
T ss_dssp ----CEEEEEETTSSSSCEEEEEE---C-------CEEEEEETTSCEEEEEEETTEE-----------EEEEEECCCSSC
T ss_pred hhhhhhheeeecccCCCcEEEEEE---ecCCCCCCCEEEEEcCCCCEEEEECCCCCe-----------eeeeeeccCCCC
Confidence 346678888899999999999999 65 467999999999999999875421 224567899999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC 190 (512)
Q Consensus 111 V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 190 (512)
|.+++|++++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++ .+|++++.||.|++||++++...
T Consensus 83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~---- 157 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE---- 157 (321)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE----
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee----
Confidence 9999999999999999999999999999999999999999999999999998 89999999999999999865422
Q ss_pred ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390 191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
..+..+...+.+++|+|+++.+++ |+.|+.|++||+++++... .+
T Consensus 158 -----------------------~~~~~~~~~v~~~~~spdg~~las-g~~dg~i~iwd~~~~~~~~-----------~~ 202 (321)
T 3ow8_A 158 -----------------------YSLDTRGKFILSIAYSPDGKYLAS-GAIDGIINIFDIATGKLLH-----------TL 202 (321)
T ss_dssp -----------------------EEEECSSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTTEEEE-----------EE
T ss_pred -----------------------EEecCCCceEEEEEECCCCCEEEE-EcCCCeEEEEECCCCcEEE-----------EE
Confidence 133456678999999999999887 5589999999999887654 35
Q ss_pred cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
..|...|.+++|+|++++|++++.|+.|++||++.. .....+.++ ...+.+++|+|++++|++|+.|+.|++||+.
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--NLAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--ceeEEEcCC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 677888999999999999999999999999998753 334455554 3568899999999999999999999999999
Q ss_pred CCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 351 KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 351 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
+++. ...+.+|.+.|.+++|+|++ .+|++++.||.|++||..
T Consensus 279 ~~~~-~~~~~~h~~~v~~v~~s~~g-~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 279 TRTC-VHTFFDHQDQVWGVKYNGNG-SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTEE-EEEECCCSSCEEEEEECTTS-SEEEEEETTCCEEEEECC
T ss_pred CCEE-EEEEcCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEeCC
Confidence 8766 46788999999999999999 899999999999999963
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.3e-46 Score=349.17 Aligned_cols=291 Identities=17% Similarity=0.261 Sum_probs=250.6
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.....+.||.++|.+++| +||+++||+|+.||.|+|||..++. .+..+..|...|.+++|+|++
T Consensus 46 ~~~~~l~gH~~~v~~~~~---s~d~~~l~s~s~Dg~v~iWd~~~~~-------------~~~~~~~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHW---GTDSRLLLSASQDGKLIIWDSYTTN-------------KVHAIPLRSSWVMTCAYAPSG 109 (340)
T ss_dssp CEEEEECCCSSCEEEEEE---CTTSSEEEEEETTTEEEEEETTTCC-------------EEEEEECSSSCEEEEEECTTS
T ss_pred hhheeecCCCCceEEEEE---CCCCCEEEEEeCCCcEEEEECCCCC-------------cceEeecCCccEEEEEECCCC
Confidence 445678999999999999 9999999999999999999987663 366678899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 121 TNILTASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
++|++|+.|+.|++||+.++ +....+.+|.+.|.++.|++++ .+++++.|+.|++||+++++.
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~----------- 176 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQ----------- 176 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEE-----------
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcE-----------
Confidence 99999999999999999875 3456778999999999999865 599999999999999986532
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
...+.+|...|.+++|+|++..+++ |+.|+.|++||++++.... .+..|...
T Consensus 177 ----------------~~~~~~h~~~v~~~~~~~~~~~l~s-g~~d~~v~~wd~~~~~~~~-----------~~~~h~~~ 228 (340)
T 1got_B 177 ----------------TTTFTGHTGDVMSLSLAPDTRLFVS-GACDASAKLWDVREGMCRQ-----------TFTGHESD 228 (340)
T ss_dssp ----------------EEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCSEEE-----------EECCCSSC
T ss_pred ----------------EEEEcCCCCceEEEEECCCCCEEEE-EeCCCcEEEEECCCCeeEE-----------EEcCCcCC
Confidence 2245578889999999999998877 5589999999999876654 45678889
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
|.+++|+|++.+|++++.||.|++||++... .+..+........+.+++|+|++++|++|+.|+.|++||+.+... .
T Consensus 229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~ 305 (340)
T 1got_B 229 INAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-A 305 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-E
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE-e
Confidence 9999999999999999999999999987532 233333333334588899999999999999999999999988765 4
Q ss_pred ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
..+.+|.+.|++++|+|++ .+|++|+.||.|+|||
T Consensus 306 ~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 GVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred eEeecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence 6788999999999999999 8999999999999997
No 4
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-45 Score=346.37 Aligned_cols=311 Identities=18% Similarity=0.279 Sum_probs=248.8
Q ss_pred eeEeecCCccC-CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 41 AVTVEHHGEET-PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 41 ~~~~~~~gh~~-~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
.+...+.+|.+ .|.+++| +|+|++||+|+.||.|+|||+.++.. ........+|...|.+++|+|+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~---sp~g~~las~~~D~~i~iw~~~~~~~----------~~~~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAW---NPAGTLLASCGGDRRIRIWGTEGDSW----------ICKSVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp EEEEEECCSTTSCEEEEEE---CTTSSCEEEEETTSCEEEEEEETTEE----------EEEEEECSSCSSCEEEEEECTT
T ss_pred EEeeeecCCCCCcEEEEEE---CCCCCEEEEEcCCCeEEEEEcCCCcc----------eeeeeeccccCCcEEEEEECCC
Confidence 45677889988 8999999 99999999999999999999876521 0112234689999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 120 DTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
+++|++|+.|++|+|||+.++ +++..+.+|...|.+++|+|++ ++|++|+.|+.|++||++.....
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~----------- 140 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEY----------- 140 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCE-----------
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCe-----------
Confidence 999999999999999998776 4677889999999999999988 89999999999999999754321
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
.....+..|...|.+++|+|++..+++ ++.|+.|++||.++....... .+.+|...|
T Consensus 141 -------------~~~~~~~~h~~~v~~~~~~p~~~~l~s-~s~d~~i~~w~~~~~~~~~~~---------~~~~h~~~v 197 (345)
T 3fm0_A 141 -------------ECVSVLNSHTQDVKHVVWHPSQELLAS-ASYDDTVKLYREEEDDWVCCA---------TLEGHESTV 197 (345)
T ss_dssp -------------EEEEEECCCCSCEEEEEECSSSSCEEE-EETTSCEEEEEEETTEEEEEE---------EECCCSSCE
T ss_pred -------------EEEEEecCcCCCeEEEEECCCCCEEEE-EeCCCcEEEEEecCCCEEEEE---------EecCCCCce
Confidence 112245578889999999999998887 558999999999876533211 467788899
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc-------------eEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP-------------IQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 344 (512)
.+++|+|++++|++++.|++|++||........ +..+.+ .....+.+++|+|++..|++++.|+.|
T Consensus 198 ~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i 276 (345)
T 3fm0_A 198 WSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAI 276 (345)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence 999999999999999999999999974322111 111111 133568889999999999999999999
Q ss_pred EEEecCCCCCCC--------ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 345 YVWQVNKPQADP--------IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 345 ~iw~~~~~~~~~--------~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
++|+........ ....+|...|++++|+|+++.+|++|+.||.|++|++.+++...
T Consensus 277 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 277 RVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred EEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 999987653211 12357999999999999985699999999999999999887544
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.8e-45 Score=334.66 Aligned_cols=295 Identities=16% Similarity=0.233 Sum_probs=247.0
Q ss_pred eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
+...+.+|.+.|.+|+| +|++++||+|+.||.|+|||++++. .+..+..|...|.+++|+|+++
T Consensus 5 ~~~~~~~h~~~V~~~~f---sp~~~~l~s~~~dg~v~lWd~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDF---HPTEPWVLTTLYSGRVELWNYETQV-------------EVRSIQVTETPVRAGKFIARKN 68 (304)
T ss_dssp CEEEEEEECSCEEEEEE---CSSSSEEEEEETTSEEEEEETTTTE-------------EEEEEECCSSCEEEEEEEGGGT
T ss_pred eEEeecCCCCceEEEEE---CCCCCEEEEEcCCCcEEEEECCCCc-------------eeEEeeccCCcEEEEEEeCCCC
Confidence 35567899999999999 9999999999999999999997753 3677889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
+|++|+.|++|++||+.+++++..+.+|...|++++|+|++ .+|++|+.|++|++||++++..
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~---------------- 131 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA---------------- 131 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTE----------------
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcc----------------
Confidence 99999999999999999999999999999999999999988 8999999999999999875421
Q ss_pred cccccccccccceecccccccEEEEEEeec-CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKD-EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
....+.+|...|.+++|+|+ +..+++ |+.|+.|++||+++...... ....+...+..+
T Consensus 132 ----------~~~~~~~h~~~v~~v~~~p~~~~~l~s-gs~D~~v~iwd~~~~~~~~~----------~~~~~~~~v~~~ 190 (304)
T 2ynn_A 132 ----------LEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQSTPNFT----------LTTGQERGVNYV 190 (304)
T ss_dssp ----------EEEEECCCCSCEEEEEECTTCTTEEEE-EETTSEEEEEETTCSSCSEE----------EECCCTTCEEEE
T ss_pred ----------hhhhhcccCCcEEEEEECCCCCCEEEE-EeCCCeEEEEECCCCCccce----------eccCCcCcEEEE
Confidence 11245578889999999995 455555 66899999999987655433 233455678888
Q ss_pred EeCC--CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 281 SQDS--NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 281 ~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
.+++ ++.+|++++.|+.|++||++.. ..+..+.+|. ..+..++|+|++++|++|+.||.|++||+.+.+. ...
T Consensus 191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~-~~~ 265 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTK--SCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-EKT 265 (304)
T ss_dssp EECCSTTCCEEEEEETTSEEEEEETTTT--EEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEeCCCC--ccceeeCCCC--CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce-eee
Confidence 8876 7789999999999999999763 4455666654 4578899999999999999999999999998775 467
Q ss_pred eccccCCeEEEEeCCCCCC-eEEEEeCCCcEEEEeCCCC
Q 010390 359 LKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~ 396 (512)
+..|...+.+++|+|++.. ++++|+.|| +.+|++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 266 LNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp ECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred ccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 8889999999999998744 477776655 788887653
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.4e-45 Score=342.48 Aligned_cols=292 Identities=16% Similarity=0.205 Sum_probs=247.6
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.....+.||.++|++++| +|++++||+|+.||.|+|||..+... ...+..|...|.+++|+|++
T Consensus 55 ~~~~~l~gH~~~V~~~~~---s~d~~~l~s~s~Dg~v~vWd~~~~~~-------------~~~~~~~~~~v~~~~~sp~g 118 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDW---CKDKRRIVSSSQDGKVIVWDSFTTNK-------------EHAVTMPCTWVMACAYAPSG 118 (354)
T ss_dssp CEEEEEECCSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTCCE-------------EEEEECSSSCCCEEEECTTS
T ss_pred EEEEEecCCCCeEEEEEE---CCCCCEEEEEeCCCeEEEEECCCCCc-------------ceEEecCCCCEEEEEECCCC
Confidence 345678899999999999 99999999999999999999876532 55567788999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 121 TNILTASGDQTIKIWDAEKK------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
.+|++|+.|+.+++|++... .....+.+|...|.+++|+|++ ..|++++.|++|++||+++++..
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~-------- 189 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL-------- 189 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE--------
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE--------
Confidence 99999999999999998653 2345567899999999999987 89999999999999999865432
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET 272 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 272 (512)
..+.+|...|.++.++|+ +..+++ |+.||.|++||+++++... .+..
T Consensus 190 -------------------~~~~~h~~~v~~~~~~~~~~g~~l~s-gs~Dg~v~~wd~~~~~~~~-----------~~~~ 238 (354)
T 2pbi_B 190 -------------------QSFHGHGADVLCLDLAPSETGNTFVS-GGCDKKAMVWDMRSGQCVQ-----------AFET 238 (354)
T ss_dssp -------------------EEEECCSSCEEEEEECCCSSCCEEEE-EETTSCEEEEETTTCCEEE-----------EECC
T ss_pred -------------------EEEcCCCCCeEEEEEEeCCCCCEEEE-EeCCCeEEEEECCCCcEEE-----------EecC
Confidence 245578889999999885 456665 6689999999999887654 3567
Q ss_pred cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390 273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 273 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 352 (512)
|...|.+++|+|++.+|++++.|++|++||++... .+..+..+.....+.+++|+|++++|++|+.|+.|++||+.++
T Consensus 239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 88899999999999999999999999999997532 2333333333345778999999999999999999999999887
Q ss_pred CCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 353 QADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 353 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
.. ...+.+|.+.|++++|+|++ .+|++|+.||+|++|+
T Consensus 317 ~~-~~~l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 SR-VSILFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SE-EEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred ce-EEEEECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence 65 46788999999999999999 8999999999999996
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-44 Score=334.59 Aligned_cols=300 Identities=15% Similarity=0.289 Sum_probs=247.8
Q ss_pred eeeeeEeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390 38 EIGAVTVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW 116 (512)
Q Consensus 38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 116 (512)
+.-.+...+.||.++|.+|+| +|++ ++|++|+.|+.|++||+..... ....++..+.+|...|.+++|
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~---~~~~~~~l~s~s~D~~v~~W~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLAT---SAGQPNLLLSASRDKTLISWKLTGDDQ--------KFGVPVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEE---CSSCTTEEEEEETTSEEEEEEEEEETT--------EEEEEEEEEECCSSCEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEc---cCCCccEEEEecCCccEEEecCCCCCc--------cccccceEEeCCcccEEEEEE
Confidence 445667789999999999999 8865 8999999999999999865322 112346778999999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 117 IKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 117 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
+|++++|++|+.|++|+|||+.+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||++..
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~------------- 139 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ------------- 139 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-------------
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-------------
Confidence 9999999999999999999999999999999999999999999988 89999999999999998632
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCC------EEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV------SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
....+.+|...+.++.+.|... .+++ ++.|+.|++||+++.+... .+
T Consensus 140 ---------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~-----------~~ 192 (319)
T 3frx_A 140 ---------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIIS-AGNDKMVKAWNLNQFQIEA-----------DF 192 (319)
T ss_dssp ---------------EEEEECCCSSCEEEEEECCC------CCEEEE-EETTSCEEEEETTTTEEEE-----------EE
T ss_pred ---------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEE-EeCCCEEEEEECCcchhhe-----------ee
Confidence 1224457888999999998543 4554 6689999999999876554 46
Q ss_pred cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
.+|...|.+++|+|++++|++++.||.|++||+... ..+..+.. ...+.+++|+|++.+|++++.++ +++|++.
T Consensus 193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~--~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~ 266 (319)
T 3frx_A 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK--KAMYTLSA---QDEVFSLAFSPNRYWLAAATATG-IKVFSLD 266 (319)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEEEEEEC---CSCEEEEEECSSSSEEEEEETTE-EEEEEET
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEecC---CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeC
Confidence 678889999999999999999999999999998763 23344433 24588899999999999988655 9999987
Q ss_pred CCCCC-------CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 351 KPQAD-------PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 351 ~~~~~-------~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
..... ......|...+.+++|+|++ ++|++|+.||.|++||+.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG-QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TEEEEEEECCCCTTCCGGGCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEEC
T ss_pred cCeeeeccCccccccccCcCcceeEEEECCCC-CEEEEeecCceEEEEEEeec
Confidence 64321 11123467789999999999 89999999999999998764
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-45 Score=343.58 Aligned_cols=303 Identities=16% Similarity=0.163 Sum_probs=236.1
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL 124 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 124 (512)
....|...|.+++| +|||++|++++ |+.+++||........ ...............|...|++++|+|++ .|+
T Consensus 25 ~~~~~~~~v~~~~f---s~dG~~l~~~s-d~~~r~Wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~ 97 (344)
T 4gqb_B 25 APACMERQLEAARY---RSDGALLLGAS-SLSGRCWAGSLWLFKD--PCAAPNEGFCSAGVQTEAGVADLTWVGER-GIL 97 (344)
T ss_dssp SCSSCCSEEEEEEE---CTTSCEEEEEE-CCSSSCCCEEEEEESS--GGGTTCGGGCSEEEEESSCEEEEEEETTT-EEE
T ss_pred CcccccCCEEEEEE---CCCCCEEEEEe-CCceEEeeceeeeecc--ccccCCcceeeeeeccCCCEEEEEEeCCC-eEE
Confidence 34457777888888 99999999887 7788888742110000 00001111122234567889999999985 788
Q ss_pred EEeCCCcEEEEeCCCCeeeec----ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 125 TASGDQTIKIWDAEKKKCTGA----LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
+|+.||+|+|||+.+++.+.. +.+|.+.|++++|+|++ ++|++|+.|++|++||+++++.
T Consensus 98 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~--------------- 161 (344)
T 4gqb_B 98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVV--------------- 161 (344)
T ss_dssp EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE---------------
T ss_pred EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE---------------
Confidence 999999999999999876543 34899999999999988 8999999999999999986532
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
...+.+|...|.+++|++++..++++++.|+.|++||+++++..... ....+...+.++
T Consensus 162 ------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------~~~~~~~~~~~~ 220 (344)
T 4gqb_B 162 ------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI---------GCSAPGYLPTSL 220 (344)
T ss_dssp ------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC---------C----CCCEEEE
T ss_pred ------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee---------ecceeeccceee
Confidence 23566889999999999999876666779999999999988766543 233445668999
Q ss_pred EeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEecCCCCCCCce
Q 010390 281 SQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 281 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
+|+|+ +.+|++|+.||.|++||+++. ..+..+.+|. ..+.+++|+|++ ++|++|+.|++|+|||+.+++. ..
T Consensus 221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~--~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--~~ 294 (344)
T 4gqb_B 221 AWHPQQSEVFVFGDENGTVSLVDTKST--SCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--FR 294 (344)
T ss_dssp EECSSCTTEEEEEETTSEEEEEESCC----CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--EE
T ss_pred eecCCCCcceEEeccCCcEEEEECCCC--cEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--EE
Confidence 99984 578899999999999999764 4556666654 568899999997 5799999999999999988764 46
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+.+|.+.|++++|+|++..+|+++|.||+|++|++.+..
T Consensus 295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 789999999999999986678899999999999998754
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.7e-46 Score=354.35 Aligned_cols=306 Identities=14% Similarity=0.263 Sum_probs=249.8
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
......+.||.++|++++| +|++++||+|+.||.|+|||..++. ....+..|...|.+++|+|+
T Consensus 56 ~~~~~~l~gH~~~V~~~~~---sp~~~~l~s~s~D~~v~iWd~~~~~-------------~~~~~~~h~~~v~~~~~s~~ 119 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDW---TPEKNWIVSASQDGRLIVWNALTSQ-------------KTHAIKLHCPWVMECAFAPN 119 (380)
T ss_dssp CEEEEEECCCSSCEEEEEE---CTTSSCEEEEETTSEEEEEETTTTE-------------EEEEEECCCTTCCCCEECTT
T ss_pred eEEeecccccccEEEEEEE---cCCCCEEEEEeCCCeEEEEECCCCc-------------cceEEecCCCCEEEEEECCC
Confidence 4456778999999999999 9999999999999999999987653 36678899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe-------eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccc
Q 010390 120 DTNILTASGDQTIKIWDAEKKK-------CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAE 192 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 192 (512)
+++|++|+.|+.|+|||+.+.. ....+.+|.+.|.++.|+|+++..|++|+.|++|++||+++++......
T Consensus 120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-- 197 (380)
T 3iz6_a 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG-- 197 (380)
T ss_dssp SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEEC--
T ss_pred CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEee--
Confidence 9999999999999999987532 3456789999999999999876889999999999999998765332110
Q ss_pred ceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc
Q 010390 193 SFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET 272 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 272 (512)
.....+|...|.++.|++.+..++++|+.|+.|++||++....... .+.+
T Consensus 198 --------------------~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~----------~~~~ 247 (380)
T 3iz6_a 198 --------------------SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR----------TYHG 247 (380)
T ss_dssp --------------------CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE----------EECC
T ss_pred --------------------cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE----------EECC
Confidence 0012467889999999884444444577899999999985432221 4677
Q ss_pred cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-----eceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390 273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-----IESFYVKSEICPNASHILSGSSDGNAYVW 347 (512)
Q Consensus 273 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 347 (512)
|...|.+++|+|++.+|++++.||+|++||++... .+..+..+. ....+.+++|+|+|++|++|+.||.|++|
T Consensus 248 h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence 88999999999999999999999999999997643 222332221 11246789999999999999999999999
Q ss_pred ecCCCCCCCcee----ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 348 QVNKPQADPIKL----KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 348 ~~~~~~~~~~~~----~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
|+..++.. ..+ .+|.+.|++++|+|++ .+|++|+.||+|++|++...+
T Consensus 326 d~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 326 DTLLAEMV-LNLGTLQNSHEGRISCLGLSSDG-SALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ETTTCCEE-EEECCSCSSCCCCCCEEEECSSS-SEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCceE-EEEecccCCCCCceEEEEECCCC-CEEEEeeCCCCEEEEecCCCc
Confidence 99876642 233 6899999999999999 899999999999999998764
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-44 Score=363.01 Aligned_cols=333 Identities=15% Similarity=0.202 Sum_probs=252.6
Q ss_pred EeecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
...+.||.+.|.+|+| +|++. +|++|+.|+.|++||.... +....+.+|.+.|++++|+|+++
T Consensus 140 ~~~l~gh~~~v~~v~f---~p~~~~~l~s~s~D~~v~lwd~~~~-------------~~~~~l~~H~~~V~~v~fspdg~ 203 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDF---KPSRPFRIISGSDDNTVAIFEGPPF-------------KFKSTFGEHTKFVHSVRYNPDGS 203 (611)
T ss_dssp CBCCCCCSSCEEEEEE---CSSSSCEEEEEETTSCEEEEETTTB-------------EEEEEECCCSSCEEEEEECTTSS
T ss_pred cceecCCCCCceEEEE---CCCCCeEEEEEeCCCeEEEEECCCC-------------eEeeeeccccCceEEEEECCCCC
Confidence 3467899999999999 99987 6999999999999997653 33667889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeeccc-------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc-
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALM-------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES- 193 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~- 193 (512)
+|++|+.|++|++||+.+++++..+. +|.+.|.+++|+|++ .+|++++.|++|++||+++++.........
T Consensus 204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence 99999999999999999998887773 799999999999988 899999999999999998765433221100
Q ss_pred ---eeeeccc----------ccccc--cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 194 ---FVFSSAV----------VKGAH--LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 194 ---~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
......+ ..... ..........+.+|...|.+++|+|+++.+++++ .|+.|++||+.++.....
T Consensus 283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRV 361 (611)
T ss_dssp GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEC
T ss_pred ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeee
Confidence 0000000 00000 0011122335568999999999999999998754 899999999987654322
Q ss_pred ccCCCcccc-----------------------------------------------------------------------
Q 010390 259 QAWPHAESS----------------------------------------------------------------------- 267 (512)
Q Consensus 259 ~~~~~~~~~----------------------------------------------------------------------- 267 (512)
....+....
T Consensus 362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 110000000
Q ss_pred ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390 268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW 347 (512)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 347 (512)
.....+...+.+++|+|+|++|++|+.|+.|++||+.......... . .+...+.+++|+|++++|++++.|+.|++|
T Consensus 442 ~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~--~h~~~v~~v~fspdg~~las~s~d~~v~~w 518 (611)
T 1nr0_A 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-I--VHPAEITSVAFSNNGAFLVATDQSRKVIPY 518 (611)
T ss_dssp EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-E--ECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-c--CCCCceEEEEECCCCCEEEEEcCCCCEEEE
Confidence 0000123457899999999999999999999999986532111222 2 234568899999999999999999999999
Q ss_pred ecCC-CCCCCc-eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 348 QVNK-PQADPI-KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 348 ~~~~-~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
++.+ .+.... .+.+|...|++++|+|++ ++|++|+.|++|++||+.+++
T Consensus 519 ~~~~~~~~~~~~~~~~H~~~V~~v~fspdg-~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 519 SVANNFELAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EGGGTTEESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTT
T ss_pred EcCCCCceeeeeeeeecccceeEEEECCCC-CEEEEEECCCcEEEEECCCcc
Confidence 9987 433222 234599999999999999 899999999999999998765
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.2e-45 Score=341.47 Aligned_cols=299 Identities=19% Similarity=0.234 Sum_probs=230.6
Q ss_pred eEeecCCccCCcceEEEEEecCCCcEEEEeeC------CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDE------DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC 115 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 115 (512)
......+|+..|.+|+| ||||++||+|+. ||.|++|+..++.+. ........+|...|++++
T Consensus 34 p~~~p~~H~~~V~~v~f---SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~---------~~~~~~~~~~~~~V~~~~ 101 (357)
T 4g56_B 34 PVTAPACMEVQIGAVRY---RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN---------ESLCTAGVQTEAGVTDVA 101 (357)
T ss_dssp ------CCCSEEEEEEE---CSSSCEEEEEECSSSSSCCEEEEEESSCC---C---------GGGCSEEEECSSCEEEEE
T ss_pred CCCCcccccCCEEEEEE---CCCCCEEEEEcCCCCccccCeEEEEECCCCCcc---------eeEecccCCCCCCEEEEE
Confidence 33445679999999999 999999999987 788999998765431 122344567999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeeeec----ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 116 WIKEDTNILTASGDQTIKIWDAEKKKCTGA----LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 116 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
|+|++. +++++.||+|+|||+.+++.... ..+|...|++++|+|++ ++|++|+.|+.|++||+++++.
T Consensus 102 ~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~------ 173 (357)
T 4g56_B 102 WVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV------ 173 (357)
T ss_dssp EETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE------
T ss_pred EcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE------
Confidence 999875 55678899999999998875433 34799999999999988 8999999999999999986532
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
...+..|...|.+++|++++..++++++.|+.|++||+++++..... ...
T Consensus 174 ---------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---------~~~ 223 (357)
T 4g56_B 174 ---------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---------DFC 223 (357)
T ss_dssp ---------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---------CCT
T ss_pred ---------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---------eec
Confidence 22456788899999999998766656778999999999987765432 234
Q ss_pred ccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEec
Q 010390 272 TRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQV 349 (512)
Q Consensus 272 ~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~ 349 (512)
.+...+.+++|+|+ +.+|++|+.|+.|++||+++.. ....+.++ ...+.+++|+|++ ++|++|+.|++|+|||+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--~~~~~~~~--~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--SAQTSAVH--SQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--GCEEECCC--SSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCc--EeEEEecc--ceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 45667999999997 5688999999999999997643 44455544 3458889999987 57899999999999999
Q ss_pred CCCCCCCceeccccCCeEEEEeCC-CCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 350 NKPQADPIKLKSHDGEVTAVNWCP-NEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 350 ~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
++++. ....+|.+.|++|+|+| ++ .+|+|++.||+|++|++.+..
T Consensus 300 ~~~~~--~~~~~H~~~V~~vafsP~d~-~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 300 DFSEV--FRDLSHRDFVTGVAWSPLDH-SKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEE--EEECCCSSCEEEEEECSSST-TEEEEEETTSCEEEEECC---
T ss_pred CCCcE--eEECCCCCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCCC
Confidence 88765 34568999999999999 56 899999999999999997643
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.2e-44 Score=330.13 Aligned_cols=296 Identities=24% Similarity=0.433 Sum_probs=251.0
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
..+...+.||.++|.+++| +|++++||+|+.||.|+||+..++. ....+.+|...|.+++|+|+
T Consensus 13 ~~~~~~~~gh~~~v~~~~~---s~~~~~l~s~~~dg~i~iw~~~~~~-------------~~~~~~~h~~~v~~~~~~~~ 76 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKF---SPNGEWLASSSADKLIKIWGAYDGK-------------FEKTISGHKLGISDVAWSSD 76 (312)
T ss_dssp CEEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTCC-------------EEEEECCCSSCEEEEEECTT
T ss_pred ceeEEEEcccCCcEEEEEE---CCCCCEEEEeeCCCeEEEEeCCCcc-------------cchhhccCCCceEEEEEcCC
Confidence 4567788999999999999 9999999999999999999987653 25667899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
+++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++..
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~------------- 142 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCL------------- 142 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEE-------------
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEE-------------
Confidence 9999999999999999999999999999999999999999988 89999999999999999865422
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
..+..|...|.+++|+|++..+++ ++.||.|++||+++++..... ...+...+..
T Consensus 143 --------------~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~----------~~~~~~~~~~ 197 (312)
T 4ery_A 143 --------------KTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLKTL----------IDDDNPPVSF 197 (312)
T ss_dssp --------------EEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCCEEEEE----------CCSSCCCEEE
T ss_pred --------------EEecCCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeeEE----------eccCCCceEE
Confidence 244567789999999999998887 558999999999987765432 2334567899
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE-CCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI-CPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
++|+|++++|++++.||.|++||+... ..+..+.++..........+ .+++.+|++|+.||.|++||+.+++. ...
T Consensus 198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~ 274 (312)
T 4ery_A 198 VKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQK 274 (312)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTT--EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE-EEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh-hhh
Confidence 999999999999999999999998763 34445555443332222333 46789999999999999999988765 578
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEe--CCCcEEEEeCC
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSS--DDYTVRLWSLE 394 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~--~dg~i~vwd~~ 394 (512)
+.+|...|.+++|+|++ .+|++++ .|+.|++|+.+
T Consensus 275 ~~~h~~~v~~~~~~p~~-~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSS-SEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcC-CceEEEEccCCccEEEecCC
Confidence 88999999999999999 8999887 69999999975
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-44 Score=362.73 Aligned_cols=333 Identities=17% Similarity=0.205 Sum_probs=254.1
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccc----cccc---------c------------
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFA----CHRE---------N------------ 95 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~----~~~~---------~------------ 95 (512)
.....+.||.+.|.+++| +|||++||+|+.||.|+|||+.++..... .+.. +
T Consensus 50 ~~~~~~~~h~~~v~~~~~---spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKT---SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp SCCEEECCCSSCEEEEEE---CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred ccCeEecCCCCceEEEEE---CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence 445567899999999999 99999999999999999999865432110 0000 0
Q ss_pred --------ccccceeccccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeE
Q 010390 96 --------AEKARISDWVAHQNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDIL 166 (512)
Q Consensus 96 --------~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 166 (512)
........+.+|...|++++|+|++. .|++|+.|++|++||..++++...+.+|...|++++|+|++ .+|
T Consensus 127 ~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~l 205 (611)
T 1nr0_A 127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLF 205 (611)
T ss_dssp CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEE
T ss_pred ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEE
Confidence 00123345789999999999999987 59999999999999999999999999999999999999998 899
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEE
Q 010390 167 VSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVK 246 (512)
Q Consensus 167 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~ 246 (512)
++++.|++|++||+.+++....... ......+|...|.+++|+|++..+++++ .|+.|+
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~--------------------~~~~~~~h~~~V~~v~~spdg~~l~s~s-~D~~v~ 264 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFED--------------------DSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIK 264 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBC--------------------TTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEE
T ss_pred EEEECCCcEEEEECCCCcEeeeecc--------------------ccccccccCCCEEEEEECCCCCEEEEEe-CCCeEE
Confidence 9999999999999886653221100 0001226888999999999999988754 899999
Q ss_pred EEeccCccceecccCCCc--------------------------------cccccccccccCeeEEEeCCCCCEEEEEec
Q 010390 247 FWDTRNLKAQITQAWPHA--------------------------------ESSSAKETRLHGISSLSQDSNGVFLTASCM 294 (512)
Q Consensus 247 iwd~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 294 (512)
+||+++++.......... .......+|...|.+++|+|++++|++++.
T Consensus 265 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA 344 (611)
T ss_dssp EEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 999998765443321100 011134578889999999999999999999
Q ss_pred CCeEEEEEcccCCCCc---------eEee-------------------------------------e-------------
Q 010390 295 DHRIYLYNVLQLDKGP---------IQHF-------------------------------------S------------- 315 (512)
Q Consensus 295 dg~i~i~d~~~~~~~~---------~~~~-------------------------------------~------------- 315 (512)
|+.|++||+.+..... +..+ .
T Consensus 345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence 9999999986432100 0000 0
Q ss_pred -------------------eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCC
Q 010390 316 -------------------GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEA 376 (512)
Q Consensus 316 -------------------~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 376 (512)
.......+.+++|+|+|++|++|+.|+.|++||+.+.........+|...|++++|+|++
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg- 503 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG- 503 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS-
T ss_pred EEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCC-
Confidence 000112356899999999999999999999999987543212236799999999999999
Q ss_pred CeEEEEeCCCcEEEEeCCC-Cccc
Q 010390 377 GKIVTSSDDYTVRLWSLEN-SRCS 399 (512)
Q Consensus 377 ~~l~s~~~dg~i~vwd~~~-~~~~ 399 (512)
++|++++.|++|++||+.+ +++.
T Consensus 504 ~~las~s~d~~v~~w~~~~~~~~~ 527 (611)
T 1nr0_A 504 AFLVATDQSRKVIPYSVANNFELA 527 (611)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEES
T ss_pred CEEEEEcCCCCEEEEEcCCCCcee
Confidence 8999999999999999987 5443
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.6e-43 Score=330.06 Aligned_cols=307 Identities=16% Similarity=0.272 Sum_probs=242.8
Q ss_pred eeeEeecCCccCCcceEEEEE---ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390 40 GAVTVEHHGEETPPLAVSFCK---TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW 116 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~---~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 116 (512)
..+...+.||.++|++|+|.. .++++++||+|+.|+.|+|||+....... ........+.+|...|++++|
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~------~~~~~~~~l~~h~~~V~~~~~ 84 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG------YFGIPHKALTGHNHFVSDLAL 84 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS------BSEEEEEEECCCSSCEEEEEE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc------ccccccchhccCCCceEEEEE
Confidence 345667889999999998721 13489999999999999999987543210 012345678899999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 117 IKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 117 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
+|++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+......
T Consensus 85 ~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~---------- 153 (343)
T 2xzm_R 85 SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF---------- 153 (343)
T ss_dssp CSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE----------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee----------
Confidence 9999999999999999999999999999999999999999999988 89999999999999998632110
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecC----------CEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE----------VSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
.......|...|.+++|+|++ ..+++ ++.|+.|++||... ....
T Consensus 154 ---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~-~~~~--------- 207 (343)
T 2xzm_R 154 ---------------SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS-VGWDGRLKVWNTNF-QIRY--------- 207 (343)
T ss_dssp ---------------ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE-EETTSEEEEEETTT-EEEE---------
T ss_pred ---------------eeecccCCCceeeeeeeccccccccccCCCCCEEEE-EcCCCEEEEEcCCC-ceeE---------
Confidence 001123567789999999987 45555 66899999999543 2221
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV 346 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 346 (512)
.+..|...|.+++|+|++++|++++.||.|++||+..... ....+.. ...+.+++|+|++.++++|+ |+.|++
T Consensus 208 --~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~---~~~v~~v~~sp~~~~la~~~-d~~v~i 280 (343)
T 2xzm_R 208 --TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY-PQREFDA---GSTINQIAFNPKLQWVAVGT-DQGVKI 280 (343)
T ss_dssp --EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS-CSEEEEC---SSCEEEEEECSSSCEEEEEE-SSCEEE
T ss_pred --EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc-cceeecC---CCcEEEEEECCCCCEEEEEC-CCCEEE
Confidence 4567888999999999999999999999999999854322 2222211 23478899999999887665 777999
Q ss_pred EecCCCCCCC-cee-----------ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 347 WQVNKPQADP-IKL-----------KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 347 w~~~~~~~~~-~~~-----------~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
|++.+.+... ..+ .+|...|++++|+|++ .+|++|+.||.|++|+++++.
T Consensus 281 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 281 FNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG-KKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS-CCEEEEETTSEEEEEEEEEEE
T ss_pred EEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC-CeEEEecCCceEEEEEEEccC
Confidence 9998765422 122 2688899999999999 899999999999999987653
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-43 Score=325.74 Aligned_cols=302 Identities=19% Similarity=0.232 Sum_probs=230.8
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc-cc-CCCcEEEEEEec
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-VA-HQNAIFDLCWIK 118 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~l~~s~ 118 (512)
.+...+.||.++|.+++| +|+ +||+|+.||.|+|||+..+.. .....+ .+ |...|++++|+|
T Consensus 5 ~~~~~~~~h~~~v~~~~~---s~~--~las~~~D~~i~lw~~~~~~~-----------~~~~~~~~~~h~~~v~~v~~sp 68 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDF---SQG--ILATGSTDRKIKLVSVKYDDF-----------TLIDVLDETAHKKAIRSVAWRP 68 (330)
T ss_dssp EEEEEEECCSSCEEEEEE---ETT--EEEEEESSSCEEEEECSSSCC-----------EEEEEECTTCCCSCEEEEEECT
T ss_pred ccceeeccCCCceeeecc---CCC--EEEEEcCCCEEEEEEecCCCe-----------EEEEEEecCCccCCEEEEEECC
Confidence 345678899999999999 776 999999999999999976421 113333 34 999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-------CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 119 EDTNILTASGDQTIKIWDAEK-------KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
++++|++|+.|++|+|||+.. .+++..+.+|...|.+++|+|++ .+|++|+.|++|++||++.....
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~----- 142 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEE----- 142 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCC-----
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCC-----
Confidence 999999999999999999853 35667788999999999999988 89999999999999999533211
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
......+..|...|.+++|+|++..+++ ++.|+.|++||..+....... .+.
T Consensus 143 ------------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s-~s~D~~i~iW~~~~~~~~~~~---------~~~ 194 (330)
T 2hes_X 143 ------------------YECISVLQEHSQDVKHVIWHPSEALLAS-SSYDDTVRIWKDYDDDWECVA---------VLN 194 (330)
T ss_dssp ------------------CEEEEEECCCSSCEEEEEECSSSSEEEE-EETTSCEEEEEEETTEEEEEE---------EEC
T ss_pred ------------------eEEEEEeccCCCceEEEEECCCCCEEEE-EcCCCeEEEEECCCCCeeEEE---------Ecc
Confidence 1122345678889999999999998887 558999999998765311111 467
Q ss_pred ccccCeeEEEeCCC--CCEEEEEecCCeEEEEEcccCCCCc------eEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390 272 TRLHGISSLSQDSN--GVFLTASCMDHRIYLYNVLQLDKGP------IQHFSGCRIESFYVKSEICPNASHILSGSSDGN 343 (512)
Q Consensus 272 ~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 343 (512)
+|...|.+++|+|+ +.+|++++.|++|++||+....... ...+.. .+...+.+++|++++ +|++++.||.
T Consensus 195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~ 272 (330)
T 2hes_X 195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGV 272 (330)
T ss_dssp CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSC
T ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCE
Confidence 78889999999998 7799999999999999986542211 111111 134568899999665 8999999999
Q ss_pred EEEEecCCCCC--CCceeccccC-CeEEEEeCC--CCCCeEEEEeCCCcEEEEeCCC
Q 010390 344 AYVWQVNKPQA--DPIKLKSHDG-EVTAVNWCP--NEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 344 i~iw~~~~~~~--~~~~~~~h~~-~v~~v~~~~--~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
|++|+..++.. ......+|.. .|.+++|+| ++ .+|++|+.||.|++||++.
T Consensus 273 v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~-~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 273 LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK-TILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEETTEEEEEEEESCTTTTSCEEEEEEC------CCEEEEETTSEEEEEEC--
T ss_pred EEEEEcCCCceEEEeccccccccceEEEEEEecCCCc-eEEEEecCCCcEEEEEecc
Confidence 99999976532 1123357877 899999999 56 8999999999999999865
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.7e-43 Score=333.04 Aligned_cols=308 Identities=22% Similarity=0.316 Sum_probs=238.1
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccc-----ccccceeccccCCCcEEEEEEecCCC
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHREN-----AEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
.+|.+.|.+++| +|||++||+|+ ++.++||++.++.......... ...........+...|++++|+|+++
T Consensus 61 ~~h~~~V~~v~f---spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 61 LDHTSVVCCVKF---SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp EECSSCCCEEEE---CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred cCCCCEEEEEEE---CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 369999999999 99999999987 7899999998764321110000 00000001112334599999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
+|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++...
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~-------------- 201 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL-------------- 201 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE--------------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEE--------------
Confidence 99999999999999999999999999999999999999988 899999999999999998654221
Q ss_pred cccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
...+...+.+++|+| ++..+++ |+.|+.|++||++++........... ....|...|.++
T Consensus 202 --------------~~~~~~~v~~~~~~~~~~~~l~~-~s~d~~v~iwd~~~~~~~~~~~~~~~----~~~~h~~~v~~v 262 (393)
T 1erj_A 202 --------------TLSIEDGVTTVAVSPGDGKYIAA-GSLDRAVRVWDSETGFLVERLDSENE----SGTGHKDSVYSV 262 (393)
T ss_dssp --------------EEECSSCEEEEEECSTTCCEEEE-EETTSCEEEEETTTCCEEEEEC----------CCCSSCEEEE
T ss_pred --------------EEEcCCCcEEEEEECCCCCEEEE-EcCCCcEEEEECCCCcEEEeeccccc----CCCCCCCCEEEE
Confidence 112445799999999 6666665 66899999999998775543321111 235678899999
Q ss_pred EeCCCCCEEEEEecCCeEEEEEcccCCC----------CceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 281 SQDSNGVFLTASCMDHRIYLYNVLQLDK----------GPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
+|+|++++|++++.|+.|++||+..... .....+.+| ...+.+++|+|++++|++|+.|+.|++||+.
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 9999999999999999999999875322 112233333 3568889999999999999999999999999
Q ss_pred CCCCCCceeccccCCeEEEEeCC------CCCCeEEEEeCCCcEEEEeCCCC
Q 010390 351 KPQADPIKLKSHDGEVTAVNWCP------NEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 351 ~~~~~~~~~~~h~~~v~~v~~~~------~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
+++. ...+.+|.+.|.+++|++ ++ .+|++|+.||+|++|++...
T Consensus 341 ~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~-~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 341 SGNP-LLMLQGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TCCE-EEEEECCSSCEEEEEECSSCTTCTTC-EEEEEEETTSEEEEEEEEEC
T ss_pred CCeE-EEEECCCCCCEEEEEecCCcCcCCCC-CEEEEECCCCcEEECccccc
Confidence 8776 467889999999999986 56 79999999999999998643
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-41 Score=318.01 Aligned_cols=304 Identities=15% Similarity=0.261 Sum_probs=246.9
Q ss_pred eeeeeEeecCCccCCcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390 38 EIGAVTVEHHGEETPPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW 116 (512)
Q Consensus 38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 116 (512)
+...+...++||.+.|++|+| +|+ +++||+|+.||.|+|||+.+.... ...+...+.+|...|.+++|
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~---sp~~~~~l~S~s~D~~i~vWd~~~~~~~--------~~~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIAT---TPQFPDMILSASRDKTIIMWKLTRDETN--------YGIPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEE---CTTCTTEEEEEETTSCEEEEEECCSSSC--------SEEEEEEECCCSSCEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEE---eCCCCCEEEEEcCCCeEEEEECCCCCcc--------cceeeEEEeCCCCCEEEEEE
Confidence 344566679999999999999 987 689999999999999999865431 12346678899999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 117 IKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 117 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
+|++++|++++.|+.|++|+............+...+..+.+++.+ .+|++++.|+.+++||+.....
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~----------- 162 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCK----------- 162 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEE-----------
T ss_pred CCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCce-----------
Confidence 9999999999999999999999998888888888999999999987 8999999999999999864321
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
.......|...+..++|++++. .++++++.|+.|++||+++.+... .+..|..
T Consensus 163 ---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-----------~~~~h~~ 216 (340)
T 4aow_A 163 ---------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-----------NHIGHTG 216 (340)
T ss_dssp ---------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE-----------EECCCSS
T ss_pred ---------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee-----------EecCCCC
Confidence 1123446778899999988754 344556789999999999887655 4567788
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC-
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA- 354 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~- 354 (512)
.|++++|+|++++|++++.||.|++||++.. ..+..+.. ...+..++|+|++.+++ ++.|+.|++||+++...
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~---~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHLYTLDG---GDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEEEEEEC---SSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccC--ceeeeecC---CceEEeeecCCCCceee-ccCCCEEEEEECCCCeEE
Confidence 9999999999999999999999999998753 33334433 24578899999876655 55689999999986532
Q ss_pred -------CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 355 -------DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 355 -------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
......+|...|++++|+|++ .+|++|+.||.|+|||+.+|+
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 291 DELKQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEECCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEC--
T ss_pred EeccccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCCcC
Confidence 112345788999999999999 899999999999999999885
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-41 Score=341.74 Aligned_cols=364 Identities=18% Similarity=0.297 Sum_probs=275.4
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
..++||+++|++|+| ||||++||+|+.|+.|+|||.. + +.+..+.+|.+.|++++|+|++++|
T Consensus 10 ~~L~GH~~~V~~~a~---spdg~~las~~~d~~v~iWd~~-~-------------~~~~~l~gh~~~V~~l~fspdg~~l 72 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAF---SPDGQTIASASDDKTVKLWNRN-G-------------QLLQTLTGHSSSVWGVAFSPDGQTI 72 (577)
T ss_dssp EEECCCSSCEEEEEE---CTTSSCEEEEETTSEEEEECTT-S-------------CEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eEECCCCCcEEEEEE---CCCCCEEEEEeCCCEEEEEECC-C-------------CEEEEEeCCCCCEEEEEECCCCCEE
Confidence 458899999999999 9999999999999999999963 2 2367789999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
++++.|++|+|||+ +++++..+.+|...|.+++|+|++ .+|++++.|+.+++|+...............+........
T Consensus 73 as~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (577)
T 2ymu_A 73 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 150 (577)
T ss_dssp EEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTT
T ss_pred EEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCC-CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecC
Confidence 99999999999995 678888999999999999999988 8999999999999999764432211111111111111111
Q ss_pred cc-------------cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390 204 AH-------------LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 204 ~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
.. .............+...+.++.++|++..+++ ++.|+.|++||... +... ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~w~~~~-~~~~-----------~~ 217 (577)
T 2ymu_A 151 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS-ASDDKTVKLWNRNG-QLLQ-----------TL 217 (577)
T ss_dssp SSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE-EETTSEEEEECTTS-CEEE-----------EE
T ss_pred CccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEE-EcCCCEEEEEeCCC-cEEE-----------EE
Confidence 00 01112223345677889999999999999887 55899999999643 2222 45
Q ss_pred cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
..|...|.+++|+|++.+|++++.|+.|++||.. ...+..+.++ ...+.+++|+|++++|++++.|+.|++|+..
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~---~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~ 292 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT---SCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC---CCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC
Confidence 6777889999999999999999999999999963 3344555544 3568889999999999999999999999975
Q ss_pred CCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCC--
Q 010390 351 KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEP-- 428 (512)
Q Consensus 351 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 428 (512)
.. ....+.+|...|.+++|+|++ .+|++++.|+.|++||+........ ..+...+.++.+.+..+.++.+..
T Consensus 293 ~~--~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~dg 366 (577)
T 2ymu_A 293 GQ--LLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHLQTL---TGHSSSVWGVAFSPDGQTIASASDDK 366 (577)
T ss_dssp SC--EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred Cc--EEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeeEEE---eCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 43 245788999999999999999 8999999999999999876654332 222344445555544444332211
Q ss_pred -----------------cccccCCCCcCCCchhcccCCCC
Q 010390 429 -----------------GWLAKGSDRSYNSDDVLNQINSS 451 (512)
Q Consensus 429 -----------------~~~~~~~~~~~~p~~~~~~~~~~ 451 (512)
+...+. .++|+||+++++.++.
T Consensus 367 ~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~~~ 405 (577)
T 2ymu_A 367 TVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASD 405 (577)
T ss_dssp EEEEEETTCCEEEEEECCSSCEE-EEEECTTSSCEEEEET
T ss_pred EEEEEcCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEeC
Confidence 111122 5788999988877643
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.3e-41 Score=310.04 Aligned_cols=260 Identities=13% Similarity=0.205 Sum_probs=222.1
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
...++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++ ++|++|+.|+.|++||
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEE
Confidence 366788999999999999999999999999999999999999999999999999999999988 8999999999999999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~ 259 (512)
+.+++. ...+.+|...|.+++|+|++..+++ |+.|+.|++||+++......
T Consensus 84 ~~~~~~---------------------------~~~~~~h~~~v~~~~~~~~~~~l~s-gs~D~~v~lWd~~~~~~~~~- 134 (304)
T 2ynn_A 84 YNTGEK---------------------------VVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQ- 134 (304)
T ss_dssp TTTCCE---------------------------EEEEECCSSCEEEEEECSSSSEEEE-EETTSCEEEEEGGGTTEEEE-
T ss_pred CCCCcE---------------------------EEEEeCCCCcEEEEEEcCCCCEEEE-ECCCCeEEEEECCCCcchhh-
Confidence 986543 2245678899999999999998887 55899999999987644332
Q ss_pred cCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC--CCCEEE
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP--NASHIL 336 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~ 336 (512)
.+..|...|.+++|+| ++.+|++++.|+.|++||+..... ...+.... ...+..++|+| ++.+|+
T Consensus 135 ---------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 135 ---------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQ-ERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp ---------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--SEEEECCC-TTCEEEEEECCSTTCCEEE
T ss_pred ---------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--cceeccCC-cCcEEEEEEEEcCCCCEEE
Confidence 4667888999999999 678999999999999999966432 22222211 23355677766 788999
Q ss_pred EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
+|+.|+.|++||+++++. ...+.+|...|.+++|+|++ .+|++|+.||.|++||+.++++++.+.
T Consensus 203 s~s~D~~i~iWd~~~~~~-~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp EEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEcCCCeEEEEeCCCCcc-ceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeecc
Confidence 999999999999998765 57889999999999999999 899999999999999999998777643
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-40 Score=314.24 Aligned_cols=308 Identities=16% Similarity=0.230 Sum_probs=258.0
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.-...+.||.++|.+++| +|++++||+|+.||.|+|||+.++. .+..+.+|.+.|.+++|+|++
T Consensus 23 ~~~~~l~~h~~~v~~~~~---s~~~~~l~~~~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~ 86 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKY---NKEGDLLFSCSKDSSASVWYSLNGE-------------RLGTLDGHTGTIWSIDVDCFT 86 (369)
T ss_dssp EEEEEEECCSSCEEEEEE---CTTSCEEEEEESSSCEEEEETTTCC-------------EEEEECCCSSCEEEEEECTTS
T ss_pred cccEEEEEeeceEEEEEE---cCCCCEEEEEeCCCEEEEEeCCCch-------------hhhhhhhcCCcEEEEEEcCCC
Confidence 334568899999999999 9999999999999999999997763 367788999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC-----CcEEEEeCCCCCCCCCcccccee
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD-----GSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
++|++++.||.|++||+.+++.+..+. +...|.+++|+|++ .+|++++.+ +.|++||+............
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~--- 161 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKV--- 161 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE---
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeeccc---
Confidence 999999999999999999999988888 88899999999988 899999998 99999999876544322110
Q ss_pred eecccccccccccccccceecccccc--cEEEEEEeecCCEEEEEeecCCeEEEEeccCc-cceecccCCCccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASM--SITSVLYLKDEVSIATASAVNSIVKFWDTRNL-KAQITQAWPHAESSSAKET 272 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 272 (512)
..........+.. .+.+++|+|++..+++ ++.||.|++||+++. .... ....
T Consensus 162 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~-----------~~~~ 216 (369)
T 3zwl_B 162 -------------SEEPIHKIITHEGLDAATVAGWSTKGKYIIA-GHKDGKISKYDVSNNYEYVD-----------SIDL 216 (369)
T ss_dssp -------------CSSCSEEEECCTTCCCEEEEEECGGGCEEEE-EETTSEEEEEETTTTTEEEE-----------EEEC
T ss_pred -------------ccceeeeccCCcCccceeEEEEcCCCCEEEE-EcCCCEEEEEECCCCcEeEE-----------EEec
Confidence 1112223344455 8999999999998887 558999999999983 3332 3566
Q ss_pred cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC----------
Q 010390 273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG---------- 342 (512)
Q Consensus 273 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---------- 342 (512)
|...|.+++|+|++.+|++++.||.|++||+.... ....+. ....+..++|+|+++++++++.++
T Consensus 217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 291 (369)
T 3zwl_B 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSAN 291 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEE---CSSCEEEEEECSSSSEEEEEECCC----------
T ss_pred CCCceeEEEECCCCCEEEEecCCceEEEEECCCCc--eeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecC
Confidence 77889999999999999999999999999997633 333333 345577899999999999999888
Q ss_pred ----CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 343 ----NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 343 ----~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.+++||+.+.+. ...+.+|...|++++|+|++ .+|++++.||.|++|+++.+.....
T Consensus 292 ~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 292 EGKFEARFYHKIFEEE-IGRVQGHFGPLNTVAISPQG-TSYASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp ---CEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEEECHHHHTCC
T ss_pred CCcceeEEEecCCCcc-hhheecccCcEEEEEECCCC-CEEEEEcCCCeEEEEECccccchhH
Confidence 899999988776 46788999999999999999 8999999999999999998765443
No 21
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.2e-42 Score=330.32 Aligned_cols=301 Identities=14% Similarity=0.156 Sum_probs=229.2
Q ss_pred eecCCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCC
Q 010390 44 VEHHGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDT 121 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~ 121 (512)
....+|...|+||+| +| ++++||+|+.||.|+|||+.++.. .....+.+|.+.|++|+|+| ++.
T Consensus 113 ~~~~~~~~~V~~l~~---~P~~~~~lasGs~dg~i~lWd~~~~~~-----------~~~~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 113 QKAAPFDRRATSLAW---HPTHPSTVAVGSKGGDIMLWNFGIKDK-----------PTFIKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp CEEEECSSCEEEEEE---CSSCTTCEEEEETTSCEEEECSSCCSC-----------CEEECCCSSSCCCCEEEECSSCTT
T ss_pred ccCCCCCCCEEEEEE---eCCCCCEEEEEeCCCEEEEEECCCCCc-----------eeEEEccCCCCCEEEEEEeCCCCC
Confidence 345678899999999 88 567999999999999999976543 23556779999999999998 789
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
+|++|+.||+|+|||++++....... .+...+.+++|+|++ .+|++|+.||.|++||++...
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~--------------- 242 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE--------------- 242 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB---------------
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce---------------
Confidence 99999999999999998765433333 344567899999988 899999999999999986432
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
...+..|...|.+++|+|++..++++|+.|+.|++||+++.+...... ....|...|++
T Consensus 243 -------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~--------~~~~h~~~v~~ 301 (435)
T 4e54_B 243 -------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL--------YSLPHRHPVNA 301 (435)
T ss_dssp -------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS--------BCCBCSSCEEE
T ss_pred -------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE--------Eeeeccccccc
Confidence 113457888999999999998777778899999999998866543221 34567889999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeecee----ceeEEEEEECCCCCEEEEec------------CCCC
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI----ESFYVKSEICPNASHILSGS------------SDGN 343 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~g~------------~dg~ 343 (512)
++|+|++.+|++++.||.|++||+..... ...+..+.. ........|+|++.+++++. .++.
T Consensus 302 ~~~spdg~~l~s~~~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 302 ACFSPDGARLLTTDQKSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp CCBCTTSSEEEEEESSSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred eeECCCCCeeEEEcCCCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 99999999999999999999999976433 222222111 11122345555555555443 3467
Q ss_pred EEEEecCCCCCCCceeccccCCeEEE-EeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 344 AYVWQVNKPQADPIKLKSHDGEVTAV-NWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 344 i~iw~~~~~~~~~~~~~~h~~~v~~v-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
|++||..+++.......+|...|.++ +|+|++ .+|++|+ |+.|+|||+++++..
T Consensus 380 i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg-~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG-DTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEECSSSCCEEEEECCSSCCCCCCEEEECTTS-SCEEEEC-SSEEEECCCC-----
T ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC-CEEEEEc-CCcEEEEECCcCeee
Confidence 99999998876444456788889887 699999 7888876 789999999998754
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-41 Score=325.55 Aligned_cols=312 Identities=13% Similarity=0.269 Sum_probs=246.9
Q ss_pred ccCCcceEEEEEecCCCc-EEEEe----------eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe
Q 010390 49 EETPPLAVSFCKTSKNSH-IFAVS----------DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI 117 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~-~latg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 117 (512)
+..+|.+++| +|+++ +||+| +.||.|+|||+.+.... ..+.. ..|...|++++|+
T Consensus 11 ~~~~v~~~~~---sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------~~~~~-~~~~~~v~~~~~s 76 (416)
T 2pm9_A 11 EFSRTATFAW---SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------KPIAS-LQVDSKFNDLDWS 76 (416)
T ss_dssp EEEESCBCCB---CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------SCSCC-CCCSSCEEEEEEC
T ss_pred hhhhcceEee---CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----------cEEEE-EecCCceEEEEEC
Confidence 3456778888 99997 99999 89999999999865320 11222 3588999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC----CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 118 KEDTNILTASGDQTIKIWDAEK----KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 118 ~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
|++++|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+|+++.+|++++.||.|++||+.+.........
T Consensus 77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-- 154 (416)
T 2pm9_A 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT-- 154 (416)
T ss_dssp SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC--
T ss_pred CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc--
Confidence 9999999999999999999987 4578888999999999999998558999999999999999987652110000
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
.........|...|.+++|+|++..++++++.|+.|++||+++.+......... ....|
T Consensus 155 ----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~~ 213 (416)
T 2pm9_A 155 ----------------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS-----PNSGI 213 (416)
T ss_dssp ----------------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC-----CSSCC
T ss_pred ----------------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc-----ccccc
Confidence 000112346788999999999954444446689999999999887665432211 12233
Q ss_pred ccCeeEEEeCCCC-CEEEEEecCC---eEEEEEcccCCCCceEeee-eceeceeEEEEEECC-CCCEEEEecCCCCEEEE
Q 010390 274 LHGISSLSQDSNG-VFLTASCMDH---RIYLYNVLQLDKGPIQHFS-GCRIESFYVKSEICP-NASHILSGSSDGNAYVW 347 (512)
Q Consensus 274 ~~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iw 347 (512)
...|.+++|+|++ .++++++.|+ .|++||++... .....+. ++ ...+.+++|+| ++++|++++.||.|++|
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 6789999999997 6899999998 99999997642 2333333 33 35688999999 89999999999999999
Q ss_pred ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
|+.+++. ...+.+|...|++++|+|+++.+|++++.||.|++||+.+++....
T Consensus 291 d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 291 NPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp CSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred eCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 9998765 5678899999999999999867999999999999999998876554
No 23
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-40 Score=339.24 Aligned_cols=298 Identities=15% Similarity=0.250 Sum_probs=239.8
Q ss_pred eEeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
+...+++|.+.|++|+| +|++ ++|++|+.||.|+|||+.+.... .......+.+|...|.+++|+|++
T Consensus 374 ~~~~l~~H~~~V~~v~~---~~~~~~~l~s~s~D~~i~~W~~~~~~~~--------~~~~~~~~~~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIAT---PIDNADIIVSASRDKSIILWKLTKDDKA--------YGVAQRRLTGHSHFVEDVVLSSDG 442 (694)
T ss_dssp EEEEEECCSSCEEEEEC---CTTCCSEEEEEETTSEEEEEECCCSTTC--------SCEEEEEEECCSSCEEEEEECTTS
T ss_pred hhhhcccCCceeEEEEe---cCCCCCEEEEEeCCCcEEEEEccCCCcc--------cccccceecCCCCcEEEEEECCCC
Confidence 34567899999999998 8764 79999999999999998764321 112356688999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+.......
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~------------- 508 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYT------------- 508 (694)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEE-------------
T ss_pred CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCccee-------------
Confidence 999999999999999999999999999999999999999988 899999999999999975321100
Q ss_pred ccccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
.......|...|.+++|+|++. .++++++.|+.|++||+++.+... .+..|...|.+
T Consensus 509 -----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~-----------~~~~h~~~v~~ 566 (694)
T 3dm0_A 509 -----------ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-----------TLAGHTGYVST 566 (694)
T ss_dssp -----------ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE-----------EECCCSSCEEE
T ss_pred -----------eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE-----------EEcCCCCCEEE
Confidence 0012246778899999999873 344456789999999999876554 46678889999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
++|+|++++|++++.||.|++||+.+.. .+..+. ....+.+++|+|++.+|++++. +.|++||+.+.... ..+
T Consensus 567 v~~spdg~~l~sg~~Dg~i~iwd~~~~~--~~~~~~---~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~-~~~ 639 (694)
T 3dm0_A 567 VAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLE---ANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIV-EDL 639 (694)
T ss_dssp EEECTTSSEEEEEETTSBCEEEETTTTE--EEECCB---CSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEE-EEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEec---CCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCCh-hhh
Confidence 9999999999999999999999997642 233332 2345888999999998888764 55999999876532 222
Q ss_pred cc-------------------ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 360 KS-------------------HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 360 ~~-------------------h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
.. +...+++++|+|++ .+|++|+.||.|+||++.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg-~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG-STLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCCC----------------CCCCEEEEEECTTS-SEEEEEETTSEEEEEEC-
T ss_pred ccccccccccccccccccCCceeEEeeeEEEcCCC-CEEEEEcCCCeEEEEecc
Confidence 11 12247899999999 899999999999999985
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.8e-40 Score=330.87 Aligned_cols=284 Identities=22% Similarity=0.404 Sum_probs=244.5
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.+...+.+|.+.|.+++| +|++++|++++.||.|++||.... .+..+.+|...|.+++|+|++
T Consensus 294 ~~~~~~~~h~~~v~~~~~---~~~~~~l~t~~~d~~i~~w~~~~~--------------~~~~~~~~~~~v~~~~~s~~g 356 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAF---SPDGQTIASASDDKTVKLWNRNGQ--------------HLQTLTGHSSSVWGVAFSPDG 356 (577)
T ss_dssp CEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTSC--------------EEEEECCCSSCEEEEEECTTS
T ss_pred cEEEEEecCCCCeEEEEE---CCCCCEEEEEeCCCeEEEEeCCCC--------------eeEEEeCCCCCEEEEEECCCC
Confidence 445667899999999999 999999999999999999997643 255678899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||... +
T Consensus 357 ~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~---------------- 417 (577)
T 2ymu_A 357 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-Q---------------- 417 (577)
T ss_dssp SEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-C----------------
T ss_pred CEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-C----------------
Confidence 99999999999999995 677888899999999999999988 8999999999999999542 1
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
....+..|...|.+++|+|+++.+++++ .|+.|++||... +... ....|...|.++
T Consensus 418 -----------~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~-~~~~-----------~~~~~~~~v~~~ 473 (577)
T 2ymu_A 418 -----------LLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNG-QLLQ-----------TLTGHSSSVRGV 473 (577)
T ss_dssp -----------EEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTS-CEEE-----------EEECCSSCEEEE
T ss_pred -----------EEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCC-CEEE-----------EEcCCCCCEEEE
Confidence 1224557888999999999999988754 899999999754 2222 456778899999
Q ss_pred EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390 281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360 (512)
Q Consensus 281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~ 360 (512)
+|+|++++|++++.|+.|++||.. ...+..+.+|. ..+.+++|+|++++|++++.||.|++||.. ++. +..+.
T Consensus 474 ~~spd~~~las~~~d~~i~iw~~~---~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~-~~~~~ 546 (577)
T 2ymu_A 474 AFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL-LQTLT 546 (577)
T ss_dssp EECTTSCEEEEEETTSEEEEEETT---SCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSEEEEECTT-SCE-EEEEE
T ss_pred EEcCCCCEEEEEeCCCEEEEEcCC---CCEEEEEeCCC--CCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCE-EEEEc
Confidence 999999999999999999999953 34566666654 568899999999999999999999999964 333 56788
Q ss_pred cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 361 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
+|.+.|++++|+||+ ++|+|++.|++|++||
T Consensus 547 ~h~~~v~~~~fs~dg-~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 GHSSSVWGVAFSPDG-QTIASASSDKTVKLWN 577 (577)
T ss_dssp CCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEcCCC-CEEEEEeCCCEEEEeC
Confidence 999999999999999 8999999999999997
No 25
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-40 Score=318.46 Aligned_cols=255 Identities=20% Similarity=0.344 Sum_probs=223.9
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 180 (512)
...+.+|.+.|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|++++|+|++ .+|++|+.|++|++||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEET
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Confidence 45678999999999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~ 260 (512)
.+.+. ...+.+|...|.+++|+|++..+++ |+.|+.|++||++++....
T Consensus 180 ~~~~~---------------------------~~~~~~h~~~V~~v~~~p~~~~l~s-~s~D~~i~~wd~~~~~~~~--- 228 (410)
T 1vyh_C 180 QGFEC---------------------------IRTMHGHDHNVSSVSIMPNGDHIVS-ASRDKTIKMWEVQTGYCVK--- 228 (410)
T ss_dssp TSSCE---------------------------EECCCCCSSCEEEEEECSSSSEEEE-EETTSEEEEEETTTCCEEE---
T ss_pred CCCce---------------------------eEEEcCCCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCcEEE---
Confidence 76432 2245578889999999999998887 5589999999999887654
Q ss_pred CCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC---------
Q 010390 261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN--------- 331 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------- 331 (512)
.+..|...|.++.+++++.+|++++.|+.|++||+... .....+.++ ...+.+++|+|+
T Consensus 229 --------~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~--~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~ 296 (410)
T 1vyh_C 229 --------TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK--ECKAELREH--RHVVECISWAPESSYSSISEA 296 (410)
T ss_dssp --------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECCSCGGGGGGGC
T ss_pred --------EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC--ceeeEecCC--CceEEEEEEcCcccccchhhh
Confidence 45678888999999999999999999999999998763 334444444 356888999996
Q ss_pred -----------CCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 332 -----------ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 332 -----------~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
+.+|++|+.|+.|++||+.++.. ...+.+|...|++++|+|++ .+|++|+.||.|++||+.+++++.
T Consensus 297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMK 374 (410)
T ss_dssp CSCC-------CCEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCE
T ss_pred ccccccccCCCCCEEEEEeCCCeEEEEECCCCce-EEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEE
Confidence 67899999999999999998776 46788999999999999999 899999999999999999888766
Q ss_pred c
Q 010390 401 M 401 (512)
Q Consensus 401 ~ 401 (512)
.
T Consensus 375 ~ 375 (410)
T 1vyh_C 375 T 375 (410)
T ss_dssp E
T ss_pred E
Confidence 5
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.7e-40 Score=315.71 Aligned_cols=313 Identities=16% Similarity=0.137 Sum_probs=247.7
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE- 119 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~- 119 (512)
.+...+.+|.++|.+|+| +| ++||+|+.||.|+|||+.+.... .....+..+.+|...|++++|+|+
T Consensus 7 ~~~~~~~~h~~~i~~~~~---~~--~~l~s~~~dg~i~iw~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~ 74 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSA---CN--SFTVSCSGDGYLKVWDNKLLDNE-------NPKDKSYSHFVHKSGLHHVDVLQAI 74 (397)
T ss_dssp EEEEESSCSSSCEEEEEE---CS--SEEEEEETTSEEEEEESBCCTTC-------CGGGGEEEEECCTTCEEEEEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEe---cC--CeEEEEcCCCEEEEEECCCcccc-------cCCCcceEEecCCCcEEEEEEeccc
Confidence 455678899999999999 77 89999999999999999876421 112346777899999999999999
Q ss_pred ---C---CEEEEEeCCCcEEEEeCCCCee-----eecccCc-----CCCEEEEEee----CCCCCe-EEEEeCCCcEEEE
Q 010390 120 ---D---TNILTASGDQTIKIWDAEKKKC-----TGALMGH-----TGSIKSLCSH----PTNSDI-LVSGSRDGSFAIW 178 (512)
Q Consensus 120 ---~---~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~h-----~~~v~~l~~~----~~~~~~-l~s~~~dg~i~vw 178 (512)
+ ++|++++.||.|++||+.+++. ...+..| ...|.+++|+ |++ .+ |++++.||.|++|
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIW 153 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEE
Confidence 9 9999999999999999998887 7888888 5899999999 887 77 9999999999999
Q ss_pred eCCC------CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC
Q 010390 179 DLRC------KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN 252 (512)
Q Consensus 179 d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~ 252 (512)
|++. ...........+. ........|...+.+++|+|++ .+++ ++.|+.|++||+++
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~dg~i~i~d~~~ 216 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQ---------------GTVESPMTPSQFATSVDISERG-LIAT-GFNNGTVQISELST 216 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEE---------------EEECCSSSSCCCCCEEEECTTS-EEEE-ECTTSEEEEEETTT
T ss_pred eCCccccccccceeeccCcceee---------------eeeccccCCCCCceEEEECCCc-eEEE-EeCCCcEEEEECCC
Confidence 9987 3332200000000 0000113567889999999999 5555 66899999999998
Q ss_pred ccceecccCCCccccccccc---c---ccCeeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCCceEeeeece-----
Q 010390 253 LKAQITQAWPHAESSSAKET---R---LHGISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKGPIQHFSGCR----- 318 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~----- 318 (512)
.+.... ... | ...|.+++|+|++.+|++++.| |.|++||+... ..+..+....
T Consensus 217 ~~~~~~-----------~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 217 LRPLYN-----------FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQA 283 (397)
T ss_dssp TEEEEE-----------EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC------
T ss_pred CceeEE-----------EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC--cccceeccCcccccc
Confidence 766543 344 6 7889999999999999999999 99999999763 3444444410
Q ss_pred ------eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec------cc---------------cCCeEEEEe
Q 010390 319 ------IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK------SH---------------DGEVTAVNW 371 (512)
Q Consensus 319 ------~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~------~h---------------~~~v~~v~~ 371 (512)
....+.+++|+|++++|++++.||.|++||+.+.+. ...+. +| ...|++++|
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 362 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 362 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecccCcccchhhhhccccccccccCCceeEEEe
Confidence 346688999999999999999999999999988765 45666 67 899999999
Q ss_pred CCCCC---------CeEEEEeCCCcEEEEeCCCCc
Q 010390 372 CPNEA---------GKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 372 ~~~~~---------~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+|++. .+|++++.||.|++||+.+|+
T Consensus 363 ~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 363 LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99973 499999999999999998764
No 27
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-39 Score=310.06 Aligned_cols=297 Identities=12% Similarity=0.161 Sum_probs=234.4
Q ss_pred eeeEeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK 118 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 118 (512)
..+...+.+|.+.|.+++| +|++ ++||+|+.||.|+|||+.+... .......+|...|.+++|+|
T Consensus 63 ~~~~~~~~~h~~~v~~~~~---~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~h~~~v~~~~~~~ 128 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEW---HPTHPTTVAVGSKGGDIILWDYDVQNK-----------TSFIQGMGPGDAITGMKFNQ 128 (383)
T ss_dssp CEEEEEECCCSSCEEEEEE---CSSCTTEEEEEEBTSCEEEEETTSTTC-----------EEEECCCSTTCBEEEEEEET
T ss_pred cceEEeccCCCCCEEEEEE---CCCCCCEEEEEcCCCeEEEEeCCCccc-----------ceeeecCCcCCceeEEEeCC
Confidence 4556678899999999999 9999 8999999999999999987643 12333457999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCeeeeccc---CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 119 -EDTNILTASGDQTIKIWDAEKKKCTGALM---GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 119 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
++.+|++++.|+.|++||+.+ ..+..+. .|...|.+++|+|++ .+|++++.|+.|++||++. +
T Consensus 129 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~---------- 195 (383)
T 3ei3_B 129 FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDG-H---------- 195 (383)
T ss_dssp TEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTS-C----------
T ss_pred CCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCC-C----------
Confidence 789999999999999999986 4444443 344789999999988 8999999999999999842 1
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL 274 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
....+..|...|.+++|+|++..++++++.|+.|++||+++.+...... ....|.
T Consensus 196 -----------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~ 250 (383)
T 3ei3_B 196 -----------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI--------AEMPHE 250 (383)
T ss_dssp -----------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE--------EEEECS
T ss_pred -----------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE--------EEecCC
Confidence 1224557888999999999999444456689999999999743211100 223577
Q ss_pred cCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeecee---------------ceeEEEEEECCCCCEEEEe
Q 010390 275 HGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI---------------ESFYVKSEICPNASHILSG 338 (512)
Q Consensus 275 ~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~l~~g 338 (512)
..|.+++|+| ++.+|++++.|+.|++||+++..... .+..+.. ...+..++|+|++++ +|
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~ 326 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD--QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LL 326 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS--EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CT
T ss_pred CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc--ccccccccccccccceEEeccCCCCceEEEecCCccc--cc
Confidence 8999999999 99999999999999999998754432 2222110 123445777888877 88
Q ss_pred cCCCCEEEEecCCCCCCCceecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 339 SSDGNAYVWQVNKPQADPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
+.|+.|++||+.+++. ...+.+ |...+..++|+|++ .+|++++ ||.|++||+++
T Consensus 327 s~d~~i~iwd~~~~~~-~~~l~~~~~~~~~~~~~~s~~g-~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 327 NDKRTIDIYDANSGGL-VHQLRDPNAAGIISLNKFSPTG-DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCCCEEEEETTTCCE-EEEECBTTBCSCCCEEEECTTS-SEEEEEE-TTEEEEEECC-
T ss_pred CCCCeEEEEecCCCce-eeeecCCCCCceEEEEEEecCc-cEEEEec-CCcEEEEecCC
Confidence 8999999999998776 456665 56778888999999 8999997 99999999975
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.4e-39 Score=301.69 Aligned_cols=288 Identities=17% Similarity=0.225 Sum_probs=241.9
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc--ccCCCcEEEEEEecCCC
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW--VAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~s~~~~ 121 (512)
....+|.++|.+++| +|++++|++++ ||.|++||+.+.... ..+..+ .+|...|.+++|+|+++
T Consensus 45 ~~~~~h~~~v~~~~~---~~~~~~l~~~~-dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~ 110 (337)
T 1gxr_A 45 INTLNHGEVVCAVTI---SNPTRHVYTGG-KGCVKVWDISHPGNK----------SPVSQLDCLNRDNYIRSCKLLPDGC 110 (337)
T ss_dssp EEEECCSSCCCEEEE---CSSSSEEEEEC-BSEEEEEETTSTTCC----------SCSEEEECSCTTSBEEEEEECTTSS
T ss_pred ceeccCCCceEEEEE---ecCCcEEEEcC-CCeEEEEECCCCCce----------eeeecccccCCCCcEEEEEEcCCCC
Confidence 344479999999999 99999999999 999999999875421 112222 37999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 122 NILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
+|++++.||.|++||+.+++ ....+..|...|.+++|+|++ .+|++++.||.|++||+++++.
T Consensus 111 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~-------------- 175 (337)
T 1gxr_A 111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL-------------- 175 (337)
T ss_dssp EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--------------
T ss_pred EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce--------------
Confidence 99999999999999999887 566778899999999999987 8999999999999999986432
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
...+..|...+.+++|+|++..++++ +.|+.|++||+++++.... ..+...+.+
T Consensus 176 -------------~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~------------~~~~~~v~~ 229 (337)
T 1gxr_A 176 -------------VRQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGRQLQQ------------HDFTSQIFS 229 (337)
T ss_dssp -------------EEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEEEEE------------EECSSCEEE
T ss_pred -------------eeeeecccCceEEEEECCCCCEEEEE-ecCCcEEEEECCCCceEee------------ecCCCceEE
Confidence 22445678899999999999988875 4899999999998776542 234567999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
++|+|++.+|++++.++.|++||+.... ...+.. ....+.+++|+|++++|++++.||.|++|++.+++.. ..
T Consensus 230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~ 302 (337)
T 1gxr_A 230 LGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQ 302 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSC---EEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCC---eEEEcC--CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE--EE
Confidence 9999999999999999999999997643 223333 3456889999999999999999999999999987653 44
Q ss_pred ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
..|...|.+++|+|++ .+|++++.||.|++|++.
T Consensus 303 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 303 SKESSSVLSCDISVDD-KYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EECSSCEEEEEECTTS-CEEEEEETTSCEEEEEEE
T ss_pred ecCCCcEEEEEECCCC-CEEEEecCCCeEEEEEEe
Confidence 5688999999999999 899999999999999963
No 29
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=306.43 Aligned_cols=304 Identities=17% Similarity=0.243 Sum_probs=236.9
Q ss_pred eEeecCCccCCcceEEEEEecCCCc-EEEEeeC---CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSH-IFAVSDE---DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI 117 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~-~latg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 117 (512)
+...+.+|.++|.+|+| +|++. ++++|+. ||.|+|||+.++.. ......+|...|++++|+
T Consensus 10 ~~~~~~~h~~~v~~~~~---~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------------~~~~~~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKW---VPCSAKFVTMGNFARGTGVIQLYEIQHGDL------------KLLREIEKAKPIKCGTFG 74 (357)
T ss_dssp EEEEEEECSSCEEEEEE---CTTSSEEEEEEC--CCCEEEEEEEECSSSE------------EEEEEEEESSCEEEEECT
T ss_pred hhhhccCCCCceEEEEE---cCCCceEEEecCccCCCcEEEEEeCCCCcc------------cceeeecccCcEEEEEEc
Confidence 34455789999999999 99996 5566665 99999999987542 112233789999999999
Q ss_pred cC---CCEEEEEeCCCcEEEEeCCCCe-eeecccCcCCCEEEEEe------eCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390 118 KE---DTNILTASGDQTIKIWDAEKKK-CTGALMGHTGSIKSLCS------HPTNSDILVSGSRDGSFAIWDLRCKSSPK 187 (512)
Q Consensus 118 ~~---~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~------~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 187 (512)
|+ +.+|++|+.||.|++||+.+++ .+..+.+|...|.++.| +|++ .+|++++.||.|++||++++....
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCS
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcc
Confidence 98 6999999999999999999988 88889999999999965 5666 899999999999999998765211
Q ss_pred -CccccceeeecccccccccccccccceecccccccEEEEE----EeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390 188 -SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVL----YLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP 262 (512)
Q Consensus 188 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~ 262 (512)
.... ....+...+.++. |++++..+++ ++.||.|++||+++.+...
T Consensus 154 ~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~----- 204 (357)
T 3i2n_A 154 ANMEP-----------------------VQGENKRDCWTVAFGNAYNQEERVVCA-GYDNGDIKLFDLRNMALRW----- 204 (357)
T ss_dssp EEECC-----------------------CTTSCCCCEEEEEEECCCC-CCCEEEE-EETTSEEEEEETTTTEEEE-----
T ss_pred eeccc-----------------------cCCCCCCceEEEEEEeccCCCCCEEEE-EccCCeEEEEECccCceee-----
Confidence 1100 0011133788888 6788888887 5589999999999877542
Q ss_pred CccccccccccccCeeEEEeCC---CCCEEEEEecCCeEEEEEcccCCCCceEee-eeceeceeEEEEEECCCCC-EEEE
Q 010390 263 HAESSSAKETRLHGISSLSQDS---NGVFLTASCMDHRIYLYNVLQLDKGPIQHF-SGCRIESFYVKSEICPNAS-HILS 337 (512)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~-~l~~ 337 (512)
...+...|.+++|+| ++.+|++++.||.|++||++.......... ........+.+++|+|+++ +|++
T Consensus 205 -------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 277 (357)
T 3i2n_A 205 -------ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLT 277 (357)
T ss_dssp -------EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred -------ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEE
Confidence 455667899999999 999999999999999999977544332221 1112345688999999998 8999
Q ss_pred ecCCCCEEEEecCCCCCC------------------CceeccccCCeEEEEeCCCCCCeEE-EEeCCCcEEEEeCCCCcc
Q 010390 338 GSSDGNAYVWQVNKPQAD------------------PIKLKSHDGEVTAVNWCPNEAGKIV-TSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~------------------~~~~~~h~~~v~~v~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~ 398 (512)
|+.||.|++||+...... ...+.+|...|++++|+|++ .+|+ +++.||.|++||+.+.+.
T Consensus 278 ~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 278 AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK-RGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS-TTEEEEEETTSEEEEEEECC---
T ss_pred EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC-CeEEEEecCCCcEEEEECCCccc
Confidence 999999999999865432 34577899999999999999 6776 899999999999987653
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.1e-40 Score=310.11 Aligned_cols=308 Identities=11% Similarity=0.160 Sum_probs=242.0
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~ 126 (512)
..|.++|.+++| +|++++||+|+.||.|+|||+.++. ...+..+.+|...|++++|+|++++|+++
T Consensus 5 ~~~~~~i~~~~~---s~~~~~l~~~~~d~~v~i~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 70 (372)
T 1k8k_C 5 SFLVEPISCHAW---NKDRTQIAICPNNHEVHIYEKSGNK-----------WVQVHELKEHNGQVTGVDWAPDSNRIVTC 70 (372)
T ss_dssp ESCSSCCCEEEE---CTTSSEEEEECSSSEEEEEEEETTE-----------EEEEEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred cccCCCeEEEEE---CCCCCEEEEEeCCCEEEEEeCCCCc-----------EEeeeeecCCCCcccEEEEeCCCCEEEEE
Confidence 448999999999 9999999999999999999987652 12477788999999999999999999999
Q ss_pred eCCCcEEEEeCCCCeeeec--ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 127 SGDQTIKIWDAEKKKCTGA--LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
+.||.|++||+.+++.... +..|...|.+++|+|++ .+|++++.|+.|++||++.......
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~---------------- 133 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWV---------------- 133 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEE----------------
T ss_pred cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCccee----------------
Confidence 9999999999988865433 46789999999999988 8999999999999999986542110
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc-------CCCccccccccccccCe
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA-------WPHAESSSAKETRLHGI 277 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i 277 (512)
.......|...|.+++|+|++..+++ ++.||.|++||++......... .+.......+..|...|
T Consensus 134 -------~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (372)
T 1k8k_C 134 -------CKHIKKPIRSTVLSLDWHPNSVLLAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205 (372)
T ss_dssp -------EEEECTTCCSCEEEEEECTTSSEEEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred -------eeeeecccCCCeeEEEEcCCCCEEEE-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence 01122456789999999999998887 5589999999975322110000 00001111345677889
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC--CC--
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK--PQ-- 353 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~--~~-- 353 (512)
.+++|+|++.+|++++.||.|++||+... ..+..+..+ ...+.+++|+|++++|++| .|+.|++|++.. +.
T Consensus 206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~ 280 (372)
T 1k8k_C 206 HGVCFSANGSRVAWVSHDSTVCLADADKK--MAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLS 280 (372)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGT--TEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCC--ceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEE
Confidence 99999999999999999999999999764 345555544 3457889999999999888 899999999987 31
Q ss_pred ------------------------------CC------CceeccccCCeEEEEeCCCCC---CeEEEEeCCCcEEEEeCC
Q 010390 354 ------------------------------AD------PIKLKSHDGEVTAVNWCPNEA---GKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 354 ------------------------------~~------~~~~~~h~~~v~~v~~~~~~~---~~l~s~~~dg~i~vwd~~ 394 (512)
.. .....+|...|++++|.+.+. .+|+||+.||.|++||+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 281 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp ECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred EeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 00 112258999999999886553 699999999999999998
Q ss_pred CCcc
Q 010390 395 NSRC 398 (512)
Q Consensus 395 ~~~~ 398 (512)
+++.
T Consensus 361 ~~~~ 364 (372)
T 1k8k_C 361 SLES 364 (372)
T ss_dssp HHHH
T ss_pred ChhH
Confidence 7654
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8e-40 Score=302.73 Aligned_cols=256 Identities=21% Similarity=0.361 Sum_probs=216.4
Q ss_pred eeccccCCCcEEEEEEecC----CCEEEEEeCCCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390 101 ISDWVAHQNAIFDLCWIKE----DTNILTASGDQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 174 (512)
...+++|.+.|++++|+|+ +.+|++|+.|++|+|||+.+++. ...+.+|...|.+++|++++ .++++++.|++
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~ 103 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAH 103 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCc
Confidence 4556799999999999984 67899999999999999987754 45688999999999999988 89999999999
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
|++||+.+++.. ..+..+...+.+++|+|+++.+++ |+.|+.|++||+++++
T Consensus 104 i~lWd~~~~~~~---------------------------~~~~~~~~~~~~~~~spdg~~l~~-g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 104 IRLWDLENGKQI---------------------------KSIDAGPVDAWTLAFSPDSQYLAT-GTHVGKVNIFGVESGK 155 (321)
T ss_dssp EEEEETTTTEEE---------------------------EEEECCTTCCCCEEECTTSSEEEE-ECTTSEEEEEETTTCS
T ss_pred EEEEECCCCCEE---------------------------EEEeCCCccEEEEEECCCCCEEEE-EcCCCcEEEEEcCCCc
Confidence 999999865422 233456667889999999999887 5589999999999877
Q ss_pred ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE
Q 010390 255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH 334 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 334 (512)
... ....+...|.+++|+|++++|++++.||.|++||+.+. ..+..+.++. ..+.+++|+|++++
T Consensus 156 ~~~-----------~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~--~~~~~~~~h~--~~v~~l~~spd~~~ 220 (321)
T 3ow8_A 156 KEY-----------SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHA--MPIRSLTFSPDSQL 220 (321)
T ss_dssp EEE-----------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCS--SCCCEEEECTTSCE
T ss_pred eeE-----------EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcccC--CceeEEEEcCCCCE
Confidence 654 34556677999999999999999999999999998763 3445555543 45778999999999
Q ss_pred EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 335 l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
|++|+.|+.|++||+.+... ...+.+|...|.+++|+|++ .+|++++.|++|++||+.+++++..+
T Consensus 221 l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~ 286 (321)
T 3ow8_A 221 LVTASDDGYIKIYDVQHANL-AGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTCVHTF 286 (321)
T ss_dssp EEEECTTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEcCCCeEEEEECCCcce-eEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence 99999999999999988765 46788999999999999999 89999999999999999998877653
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=303.39 Aligned_cols=251 Identities=15% Similarity=0.219 Sum_probs=205.1
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
|...|.+|+| +|++ .|++|+.||.|+|||+++++... .....+.+|.+.|++++|+|++++|++|+.
T Consensus 81 ~~~~v~~~~~---s~d~-~l~~~s~dg~v~lWd~~~~~~~~---------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~ 147 (344)
T 4gqb_B 81 TEAGVADLTW---VGER-GILVASDSGAVELWELDENETLI---------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSK 147 (344)
T ss_dssp ESSCEEEEEE---ETTT-EEEEEETTSEEEEEEECTTSSCE---------EEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cCCCEEEEEE---eCCC-eEEEEECCCEEEEEeccCCCcee---------EeeccccCCCCCEEEEEECCCCCEEEEEeC
Confidence 5677888888 8885 67899999999999998765421 112345689999999999999999999999
Q ss_pred CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
|++|+|||+.+++++..+.+|...|++++|++++..+|++++.|++|++||+++++.....
T Consensus 148 d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~------------------- 208 (344)
T 4gqb_B 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI------------------- 208 (344)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-------------------
T ss_pred CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee-------------------
Confidence 9999999999999999999999999999999998778999999999999999876543321
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-C
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-V 287 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 287 (512)
....+...+.+++|+|++..++++|+.||.|++||+++++.+. .+..|...|++++|+|++ +
T Consensus 209 ------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~-----------~~~~h~~~v~~v~fsp~g~~ 271 (344)
T 4gqb_B 209 ------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL-----------SSAVHSQCVTGLVFSPHSVP 271 (344)
T ss_dssp ------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE-----------EEECCSSCEEEEEECSSSSC
T ss_pred ------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE-----------EEcCCCCCEEEEEEccCCCe
Confidence 1123455789999999877776678899999999999887665 467788999999999998 5
Q ss_pred EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCC
Q 010390 288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~ 353 (512)
+|++++.|++|++||+... .+..+.+| ...|.+++|+|+++ +|++|+.|++|++|++.+..
T Consensus 272 ~lasgs~D~~i~vwd~~~~---~~~~~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSLS---ELFRSQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CEEEEETTSCEEEECTTCC---EEEEECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEEEeCCCeEEEEECCCC---cEEEEcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 7999999999999998653 23444444 46789999999986 56789999999999997654
No 33
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.7e-39 Score=307.53 Aligned_cols=309 Identities=13% Similarity=0.255 Sum_probs=237.2
Q ss_pred eecCCccCCcceEEEEEecCC----CcEEEEeeCCCcEEEEECCCCCCccccccccccccceec--cccCCCcEEEEEEe
Q 010390 44 VEHHGEETPPLAVSFCKTSKN----SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISD--WVAHQNAIFDLCWI 117 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~----~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~l~~s 117 (512)
....||.++|.+|+| +|+ ...+++++.++.|+|||+.++... ..+.. ...|...|++++|+
T Consensus 12 ~~~~~h~~~v~~i~~---~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~ 78 (366)
T 3k26_A 12 SLKEDHNQPLFGVQF---NWHSKEGDPLVFATVGSNRVTLYECHSQGEI----------RLLQSYVDADADENFYTCAWT 78 (366)
T ss_dssp EEECTTCSCEEEEEE---CTTCCTTSCEEEEEEETTEEEEEEECGGGCE----------EEEEEEECSCTTCCEEEEEEE
T ss_pred EeecCCCCceEEEEE---ecccCCCCceEEEECCCCEEEEEEcCCCcEE----------EeeeeccccCCCCcEEEEEec
Confidence 345689999999999 763 445666666779999999765331 11111 12377899999999
Q ss_pred cC----CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 118 KE----DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 118 ~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++.+|++++.||.|++||+++++....
T Consensus 79 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----- 153 (366)
T 3k26_A 79 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----- 153 (366)
T ss_dssp ECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE-----
T ss_pred cCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE-----
Confidence 98 679999999999999999999999999999999999999994449999999999999999986542211
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC-----CC-----
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW-----PH----- 263 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~-----~~----- 263 (512)
......|...|.+++|+|++..+++++ .||.|++||+++.+....... +.
T Consensus 154 -------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (366)
T 3k26_A 154 -------------------FGGVEGHRDEVLSADYDLLGEKIMSCG-MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 213 (366)
T ss_dssp -------------------ECSTTSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSC
T ss_pred -------------------ecccccccCceeEEEECCCCCEEEEec-CCCCEEEEECCCCccccccceeEEecCCCCccc
Confidence 001246888999999999999888754 799999999998765432110 00
Q ss_pred -------ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCC------------CceEeeeeceeceeEE
Q 010390 264 -------AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDK------------GPIQHFSGCRIESFYV 324 (512)
Q Consensus 264 -------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~ 324 (512)
.........|...|.+++|+ +.+|++++.||.|++||+..... ..+..+..+ ...+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 289 (366)
T 3k26_A 214 FISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIW 289 (366)
T ss_dssp CCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSS
T ss_pred ccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEE
Confidence 00001223378889999998 77999999999999999876543 123333333 23466
Q ss_pred EEEECCC--CCEEEEecCCCCEEEEecCCCCCC---Cceeccc--cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 325 KSEICPN--ASHILSGSSDGNAYVWQVNKPQAD---PIKLKSH--DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 325 ~~~~s~~--~~~l~~g~~dg~i~iw~~~~~~~~---~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
+++|+|+ +++|++|+.||.|++||+.+++.. ...+.+| ...|++++|+|++ .+|++++.||.|++||+.+
T Consensus 290 ~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 290 YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS-SILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEEC--
T ss_pred EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC-CeEEEEeCCCEEEEEEecC
Confidence 7888898 999999999999999999887542 2256677 7899999999999 8999999999999999863
No 34
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-40 Score=313.26 Aligned_cols=303 Identities=13% Similarity=0.126 Sum_probs=225.1
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~ 126 (512)
+.|.++|.+++| +|++++||+|+.||.|+|||+.++.. ..+..+.+|.+.|++++|+|++++|+++
T Consensus 8 ~~~~~~v~~~~~---s~~g~~l~~~~~d~~i~iw~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 73 (377)
T 3dwl_C 8 HILPKPSYEHAF---NSQRTEFVTTTATNQVELYEQDGNGW-----------KHARTFSDHDKIVTCVDWAPKSNRIVTC 73 (377)
T ss_dssp EECSSCCSCCEE---CSSSSEEECCCSSSCBCEEEEETTEE-----------EECCCBCCCSSCEEEEEECTTTCCEEEE
T ss_pred ecCCCcEEEEEE---CCCCCEEEEecCCCEEEEEEccCCce-----------EEEEEEecCCceEEEEEEeCCCCEEEEE
Confidence 346789999999 99999999999999999999976521 3367788999999999999999999999
Q ss_pred eCCCcEEEEeCCCCe---eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 127 SGDQTIKIWDAEKKK---CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
+.|++|++||+.+++ ....+.+|...|.+++|+|++ .+|++++.|+.|++||++.++...
T Consensus 74 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~---------------- 136 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWW---------------- 136 (377)
T ss_dssp ETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CC----------------
T ss_pred eCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccce----------------
Confidence 999999999999887 667778899999999999987 899999999999999998764211
Q ss_pred cccccccccceeccc-ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC-------Ccccccccccccc
Q 010390 204 AHLLSQSKRVSRRKA-ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP-------HAESSSAKETRLH 275 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 275 (512)
....+.. |...|.+++|+|++..+++ ++.|+.|++||++........... .......+ .|..
T Consensus 137 --------~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 206 (377)
T 3dwl_C 137 --------VSKHLKRPLRSTILSLDWHPNNVLLAA-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG 206 (377)
T ss_dssp --------CCEEECSSCCSCEEEEEECTTSSEEEE-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS
T ss_pred --------eeeEeecccCCCeEEEEEcCCCCEEEE-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc
Confidence 0112334 7889999999999998887 458999999999743321110000 00011123 7788
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc--eEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP--IQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 353 (512)
.|.+++|+|++++|++++.||.|++||+....... +..+..+ ...+.+++|+|++++|++|+.++.+ +|+.....
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~ 283 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESG 283 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCCC--
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCc
Confidence 89999999999999999999999999998754422 3444444 3458889999999999999876655 77665211
Q ss_pred -CCC--------------------------------------------------ceeccccCCeEEEEeCCCCCC---eE
Q 010390 354 -ADP--------------------------------------------------IKLKSHDGEVTAVNWCPNEAG---KI 379 (512)
Q Consensus 354 -~~~--------------------------------------------------~~~~~h~~~v~~v~~~~~~~~---~l 379 (512)
... .....|...|+++++.+.... .|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~ 363 (377)
T 3dwl_C 284 WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAF 363 (377)
T ss_dssp -CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEE
T ss_pred eEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEE
Confidence 000 011239999999998765434 69
Q ss_pred EEEeCCCcEEEEeC
Q 010390 380 VTSSDDYTVRLWSL 393 (512)
Q Consensus 380 ~s~~~dg~i~vwd~ 393 (512)
+|||.||.|++||+
T Consensus 364 ~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 364 TSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEETTSEEEEECC
T ss_pred EeecCCCcEEEecC
Confidence 99999999999986
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-39 Score=304.89 Aligned_cols=288 Identities=13% Similarity=0.184 Sum_probs=204.2
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---- 128 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---- 128 (512)
-.++.. .+++.++.+ ..+.....|++... ....|+..|++++|+|||++|++|+.
T Consensus 8 ~sg~d~---g~~~~~~~~-~g~~~~~~w~~p~~-----------------~p~~H~~~V~~v~fSpDG~~las~s~d~~~ 66 (357)
T 4g56_B 8 SSGVDL---GTENLYFQS-NGSSKGSAWGRPVT-----------------APACMEVQIGAVRYRRDGALLLAASSLSSR 66 (357)
T ss_dssp -----------------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSS
T ss_pred ccCCCC---CccceEEec-CCCccccccCCCCC-----------------CcccccCCEEEEEECCCCCEEEEEcCCCCc
Confidence 344555 555555444 44677899987432 23579999999999999999999997
Q ss_pred --CCcEEEEeCCCCeeeecc----cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 129 --DQTIKIWDAEKKKCTGAL----MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 129 --dg~i~iwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
|+.|++|+..++.....+ .+|...|.+++|+|++ .+++++.||+|++||+.+++.....
T Consensus 67 ~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~~------------- 131 (357)
T 4g56_B 67 TWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK--GILVASDSGAVELWEILEKESLLVN------------- 131 (357)
T ss_dssp SCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT--EEEEEETTSCEEEC--------CCC-------------
T ss_pred cccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC--CEEEEECCCEEEEeeccccceeEEE-------------
Confidence 788999998877654333 4688899999999976 4667888999999999876543321
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
.....+|...|.+++|+|+++.+++ |+.|+.|++||+++++... .+..|...|.+++|
T Consensus 132 ----------~~~~~~h~~~V~~v~~spdg~~l~s-gs~dg~v~iwd~~~~~~~~-----------~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 132 ----------KFAKYEHDDIVKTLSVFSDGTQAVS-GGKDFSVKVWDLSQKAVLK-----------SYNAHSSEVNCVAA 189 (357)
T ss_dssp ----------CEEECCCSSCEEEEEECSSSSEEEE-EETTSCEEEEETTTTEEEE-----------EECCCSSCEEEEEE
T ss_pred ----------eeccCCCCCCEEEEEECCCCCEEEE-EeCCCeEEEEECCCCcEEE-----------EEcCCCCCEEEEEE
Confidence 1133468889999999999999887 5589999999999887665 46678889999999
Q ss_pred CCCCC-EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390 283 DSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLK 360 (512)
Q Consensus 283 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~ 360 (512)
++++. ++++++.||.|++||++..+.. ..+........+.+++|+|+ +.+|++|+.|+.|++||+.+++. ...+.
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~ 266 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKPA--TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS-AQTSA 266 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSCB--CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-CEEEC
T ss_pred ccCCCceeeeeccCCceEEEECCCCcee--eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-eEEEe
Confidence 99875 7889999999999999765432 33333333456788999998 56889999999999999998776 57889
Q ss_pred cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 361 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
+|...|++++|+|++..+|++|+.|++|+|||+++++++..
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence 99999999999999867899999999999999999876654
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-39 Score=310.34 Aligned_cols=325 Identities=11% Similarity=0.117 Sum_probs=246.2
Q ss_pred eecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEEC----CCCCCccccccccccccceecc------ccCCCcEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDS----RRKLPSFACHRENAEKARISDW------VAHQNAIF 112 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~------~~h~~~V~ 112 (512)
.....|.++|.+++| +|+++ +||+|+.||.|+|||+ .++....... ........+ .+|.+.|+
T Consensus 39 ~~~~~~~~~v~~~~~---s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~ 112 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTW---NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT---IIAELRHPFALSASSGKTTNQVT 112 (425)
T ss_dssp CEEEEECSCCSEEEE---CSSCTTEEEEEETBTEEEEEEEEEC------CEEEE---EEEEEECCCCCC------CBCEE
T ss_pred eeeeeccCceEEEEE---CCCCCcEEEEecCCceEEEEEEecccCCcccccccc---ccccccccccccccccCCCCceE
Confidence 344557799999999 99999 9999999999999999 6654200000 000011111 23788999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccc
Q 010390 113 DLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAE 192 (512)
Q Consensus 113 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 192 (512)
+++|+|++++|++|+.||.|++|| .+++.+..+..|...|.+++|+|++ .+|++++.||.|++||+.+++........
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELK 190 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence 999999999999999999999999 6788888899999999999999988 89999999999999999876543322111
Q ss_pred ce----------------eeecccccccc-------------cccccccceecccccccEEEEEEeecCCEEEEEeecCC
Q 010390 193 SF----------------VFSSAVVKGAH-------------LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS 243 (512)
Q Consensus 193 ~~----------------~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg 243 (512)
.. +....+..... ..........+..|...|.+++|+|++..+++ ++.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~ 269 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS-ASDDG 269 (425)
T ss_dssp ---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE-EETTS
T ss_pred ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE-EcCCC
Confidence 10 11111111110 01112333455678899999999999998887 45899
Q ss_pred eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeE
Q 010390 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFY 323 (512)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 323 (512)
.|++||+++.+... ....|...|.+++|+|++ ++++++.|+.|++||+... ..+..+..+ ...+
T Consensus 270 ~i~i~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~--~~~~~~~~~--~~~i 333 (425)
T 1r5m_A 270 TLRIWHGGNGNSQN-----------CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN--TLLALSIVD--GVPI 333 (425)
T ss_dssp CEEEECSSSBSCSE-----------EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT--EEEEEEECT--TCCE
T ss_pred EEEEEECCCCccce-----------EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC--cEeEecccC--CccE
Confidence 99999999876554 345677889999999999 9999999999999998653 234444433 3468
Q ss_pred EEEEECCCCCEEEEecCCCCEEEEecCCCC-------------------CCCceeccccC--CeEEEEeCCCCCCeEEEE
Q 010390 324 VKSEICPNASHILSGSSDGNAYVWQVNKPQ-------------------ADPIKLKSHDG--EVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 324 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~-------------------~~~~~~~~h~~--~v~~v~~~~~~~~~l~s~ 382 (512)
.+++|+|++++|++++.||.|++||+.+.. .....+.+|.. .|++++|+|++ .+|+++
T Consensus 334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~ 412 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVA 412 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEEEE
Confidence 889999999999999999999999998765 02466778866 99999999999 899999
Q ss_pred eCCCcEEEEeCC
Q 010390 383 SDDYTVRLWSLE 394 (512)
Q Consensus 383 ~~dg~i~vwd~~ 394 (512)
+.||.|++||++
T Consensus 413 ~~dg~i~iw~~~ 424 (425)
T 1r5m_A 413 YSLQEGSVVAIP 424 (425)
T ss_dssp ESSSCCEEEECC
T ss_pred ecCceEEEEeec
Confidence 999999999986
No 37
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-38 Score=297.45 Aligned_cols=260 Identities=17% Similarity=0.276 Sum_probs=218.9
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
.....+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++ .+|++|+.|+.|++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEE
Confidence 3466789999999999999999999999999999999999999999999999999999999988 899999999999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
|+.+..... .....+.+|...|.++.|++++. +++ ++.|+.|++||+++++...
T Consensus 125 ~~~~~~~~~-----------------------~~~~~~~~h~~~v~~~~~~~~~~-l~s-~s~d~~i~~wd~~~~~~~~- 178 (340)
T 1got_B 125 NLKTREGNV-----------------------RVSRELAGHTGYLSCCRFLDDNQ-IVT-SSGDTTCALWDIETGQQTT- 178 (340)
T ss_dssp ETTTCSBSC-----------------------EEEEEEECCSSCEEEEEEEETTE-EEE-EETTSCEEEEETTTTEEEE-
T ss_pred ECccCCCcc-----------------------eeEEEecCCCccEEEEEECCCCc-EEE-EECCCcEEEEECCCCcEEE-
Confidence 997643211 11224567888999999998876 444 5589999999999887654
Q ss_pred ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 338 (512)
.+..|...|.+++|+|++.++++++.|+.|++||++.. .....+.+| ...+.+++|+|++++|++|
T Consensus 179 ----------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~--~~~~~~~~h--~~~v~~v~~~p~~~~l~s~ 244 (340)
T 1got_B 179 ----------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGH--ESDINAICFFPNGNAFATG 244 (340)
T ss_dssp ----------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--SEEEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred ----------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCC--cCCEEEEEEcCCCCEEEEE
Confidence 45678889999999999999999999999999999763 344555554 3568889999999999999
Q ss_pred cCCCCEEEEecCCCCCCCceec--cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 339 SSDGNAYVWQVNKPQADPIKLK--SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
+.||.|++||++..+.. ..+. .+...|++++|+|++ .+|++|+.||.|++||+.+++.+..
T Consensus 245 s~d~~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~ 307 (340)
T 1got_B 245 SDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGV 307 (340)
T ss_dssp ETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cCCCcEEEEECCCCcEE-EEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEeeE
Confidence 99999999999876542 2332 233579999999999 8999999999999999988776543
No 38
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-38 Score=306.85 Aligned_cols=296 Identities=14% Similarity=0.184 Sum_probs=236.7
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
..+.+++| +|+|++|++|+.||.|++||+.+... ...+..| ..+....|++++++|++|+.||
T Consensus 57 ~~~~~~~~---s~~g~~l~~~~~d~~v~i~d~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg 119 (420)
T 3vl1_A 57 DAGKGNTF---EKVGSHLYKARLDGHDFLFNTIIRDG-------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEG 119 (420)
T ss_dssp BCCTTCEE---EEEETTEEEEEETTEEEEEECCSEET-------------TTTSCSC-CEEEEEEECSSSCEEEEEETTS
T ss_pred ccccceee---eecCCeEEEEEcCCcEEEEEecccce-------------eeEEecC-CceEEEEEecCCCEEEEEECCC
Confidence 33457777 99999999999999999999876532 3334455 4555567899999999999999
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS 210 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (512)
.|++||+.+++....+.+|...|++++|+|++ .+|++++.|+.|++||+++++...
T Consensus 120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~----------------------- 175 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPR----------------------- 175 (420)
T ss_dssp CEEEECTTSCEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCE-----------------------
T ss_pred CEEEEeCCCcceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCce-----------------------
Confidence 99999999999999889999999999999988 899999999999999998765432
Q ss_pred ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc--c-----------cccccccccCe
Q 010390 211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE--S-----------SSAKETRLHGI 277 (512)
Q Consensus 211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~i 277 (512)
.+..|...|.+++|+|++..+++ ++.|+.|++||+++++........... . ......+...+
T Consensus 176 ----~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 176 ----TLIGHRATVTDIAIIDRGRNVLS-ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp ----EEECCSSCEEEEEEETTTTEEEE-EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred ----EEcCCCCcEEEEEEcCCCCEEEE-EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 44578889999999999998887 558999999999988766544321100 0 00112234667
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCCCCC
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
.+++|+|++++|++++.||.|++||++... ....+.. .....+.+++|+|+++ +|++|+.||.|++||+.+++...
T Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 327 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKE--QTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV 327 (420)
T ss_dssp CTTCSSCTTEEEEEEETTSCEEEEETTTCC--EEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred cceEEcCCCCEEEEEcCCCeEEEEECCCCc--eeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence 788889999999999999999999997632 2223222 2245688999999999 99999999999999999887656
Q ss_pred ceecc-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 357 IKLKS-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 357 ~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
..+.+ |...|+++.|. ++ .+|++++.||.|++|++...+
T Consensus 328 ~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 328 GEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEEECCTT
T ss_pred hhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEeccCCC
Confidence 66666 67788888664 66 799999999999999998754
No 39
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=303.68 Aligned_cols=328 Identities=16% Similarity=0.171 Sum_probs=245.0
Q ss_pred eeeEeecCCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK 118 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 118 (512)
+.....+.+|.++|.+++| +| ++++||+|+.||.|+|||+.+.....................+|...|.+++|+|
T Consensus 33 ~~~~~~~~~h~~~v~~~~~---s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDI---EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp CTTEEECCCCSSCEEEEEE---CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred CcceeeeeccCCcEEEEEE---ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence 4445677889999999999 99 9999999999999999999876542211100000001112246999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCC--CeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 119 -EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS--DILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 119 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
++.+|++++.||.|++||+.+++....+. +...+.++.|++.+. .++++++.||.|++||+++++...
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-------- 180 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH-------- 180 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE--------
T ss_pred CCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee--------
Confidence 78899999999999999999999888776 778899999998642 499999999999999998665432
Q ss_pred eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC-----ccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH-----AESSSAK 270 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~ 270 (512)
.+..|...|.+++|+|++..++++++.||.|++||+++........... .......
T Consensus 181 -------------------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 181 -------------------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp -------------------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred -------------------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence 4456788999999999999766667799999999998776333222111 1111133
Q ss_pred cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee--ceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG--CRIESFYVKSEICPNASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~ 348 (512)
..|...|.+++|+|++++|++++.||.|++||+.+........... ........ ......+..+++++.++.|++||
T Consensus 242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF-TVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCC-EECCSSSSCEEEEEETTEEEEEE
T ss_pred ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccccccee-EEecCCCceEEEEecCCEEEEEE
Confidence 6778899999999999999999999999999997754322211110 00011111 22223455666777899999999
Q ss_pred cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
+.+++. ...+.+|.+.|++++|+|++ .+|++++.||.|++||+.+++.+..
T Consensus 321 ~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 321 VYSGEQ-ITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp TTTCCE-EEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC------
T ss_pred CcCCcc-eeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCCccCC
Confidence 998776 57788999999999999999 8999999999999999999887654
No 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-38 Score=347.39 Aligned_cols=369 Identities=16% Similarity=0.230 Sum_probs=281.4
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
...+.+|.+.|++++| +|+|++||+|+.||.|+|||+.++.. +..+.+|.+.|.+++|+|++++
T Consensus 608 ~~~~~~h~~~v~~~~~---s~~~~~l~s~~~d~~i~vw~~~~~~~-------------~~~~~~h~~~v~~~~~s~~~~~ 671 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACF---SQDGQRIASCGADKTLQVFKAETGEK-------------LLDIKAHEDEVLCCAFSSDDSY 671 (1249)
T ss_dssp SEEECCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTCCE-------------EEEECCCSSCEEEEEECTTSSE
T ss_pred eEEEecccccEEEEEE---CCCCCEEEEEeCCCeEEEEECCCCCE-------------EEEeccCCCCEEEEEEecCCCE
Confidence 3467899999999999 99999999999999999999987643 6778899999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++ ..++++|+.|+.|++||++++...
T Consensus 672 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~--------------- 736 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR--------------- 736 (1249)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE---------------
T ss_pred EEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh---------------
Confidence 9999999999999999999999999999999999999953 368999999999999999865422
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC--------------------
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW-------------------- 261 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~-------------------- 261 (512)
..+.+|...|.+++|+|++..+++ ++.||.|++||++++........
T Consensus 737 ------------~~~~~h~~~v~~~~~sp~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 803 (1249)
T 3sfz_A 737 ------------NTMFGHTNSVNHCRFSPDDELLAS-CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 803 (1249)
T ss_dssp ------------EEECCCSSCEEEEEECSSTTEEEE-EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred ------------heecCCCCCEEEEEEecCCCEEEE-EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence 245578889999999999998887 45799999999987643222110
Q ss_pred ----------------------------------CCc--------------------------------ccccccccccc
Q 010390 262 ----------------------------------PHA--------------------------------ESSSAKETRLH 275 (512)
Q Consensus 262 ----------------------------------~~~--------------------------------~~~~~~~~~~~ 275 (512)
.+. ........|..
T Consensus 804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 883 (1249)
T 3sfz_A 804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS 883 (1249)
T ss_dssp CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence 000 00012345677
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc---------------------------eEeeee------ceecee
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP---------------------------IQHFSG------CRIESF 322 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---------------------------~~~~~~------~~~~~~ 322 (512)
.|.+++|+|++.+|++++.||.|++||+....... ...... ......
T Consensus 884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1249)
T 3sfz_A 884 WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 963 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence 78999999999999999999999999975321100 000000 011235
Q ss_pred EEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 323 YVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 323 ~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
+.+++|+|+++++++|+.+|.|++|++.++.. ...+.+|...|++++|+|++ .+|++++.||.|++||+.+++.....
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~-~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~ 1041 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV-FSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYVFLQ 1041 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTTTSC-EEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEECCB
T ss_pred EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-eeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceEEEe
Confidence 77899999999999999999999999988765 46778999999999999999 89999999999999999999877543
Q ss_pred cCccccceeeeeccchhcccccCCCC-------------------cccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390 403 SPSSVRRRVMAIPSTECRKLFMNGEP-------------------GWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP 462 (512)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 462 (512)
. +...+..+.+.+...++..+.+ +...+. .++|+||++.++.++... .+..|...
T Consensus 1042 ~---~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~s~s~d~-~v~iwd~~ 1115 (1249)
T 3sfz_A 1042 A---HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL-SCAISSDATKFSSTSADK-TAKIWSFD 1115 (1249)
T ss_dssp C---CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCC-CEEECSSSSSCEEECCSS-CCCEECSS
T ss_pred c---CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEE-EEEECCCCCEEEEEcCCC-cEEEEECC
Confidence 2 2233333333333322221111 112233 678999999888775532 34555554
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-40 Score=316.19 Aligned_cols=302 Identities=16% Similarity=0.222 Sum_probs=241.4
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCEEEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTNILT 125 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s 125 (512)
.+|...|.+++| +|++++||+|+.||.|+|||+..... ....+..+.+|...|++++|+|+ +.+|++
T Consensus 64 ~~~~~~v~~~~~---s~~~~~l~~~~~dg~v~vw~~~~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 131 (416)
T 2pm9_A 64 LQVDSKFNDLDW---SHNNKIIAGALDNGSLELYSTNEANN---------AINSMARFSNHSSSVKTVKFNAKQDNVLAS 131 (416)
T ss_dssp CCCSSCEEEEEE---CSSSSCEEEEESSSCEEEECCSSTTS---------CCCEEEECCCSSSCCCEEEECSSSTTBEEE
T ss_pred EecCCceEEEEE---CCCCCeEEEEccCCeEEEeecccccc---------cccchhhccCCccceEEEEEcCCCCCEEEE
Confidence 358888999999 99999999999999999999976321 11247778899999999999998 899999
Q ss_pred EeCCCcEEEEeCCCCe------eee---cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 126 ASGDQTIKIWDAEKKK------CTG---ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 126 ~~~dg~i~iwd~~~~~------~~~---~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
++.|+.|++||+.+++ ... .+..|...|.+++|+|+++.+|++++.||.|++||+++++.......
T Consensus 132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----- 206 (416)
T 2pm9_A 132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY----- 206 (416)
T ss_dssp ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC-----
T ss_pred EcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec-----
Confidence 9999999999999886 332 34679999999999999668999999999999999986543221100
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC---eEEEEeccCccceecccCCCcccccccc-c
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS---IVKFWDTRNLKAQITQAWPHAESSSAKE-T 272 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~ 272 (512)
.....+|...+.+++|+|++..++++++.|+ .|++||+++...... ... .
T Consensus 207 ----------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~----------~~~~~ 260 (416)
T 2pm9_A 207 ----------------TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ----------TLNQG 260 (416)
T ss_dssp ----------------CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB----------CCCSC
T ss_pred ----------------cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE----------EeecC
Confidence 0011233678999999999865555566788 999999998643322 344 6
Q ss_pred cccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEecC
Q 010390 273 RLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 273 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~ 350 (512)
|...|.+++|+| ++.+|++++.||.|++||+.+. ..+..+..+. ..+.+++|+|++ .+|++++.|+.|++|++.
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--~~~~~~~~~~--~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--EQLSQFPARG--NWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--CEEEEEECSS--SCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--ccceeecCCC--CceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 778999999999 9999999999999999998763 4455555543 457789999999 899999999999999998
Q ss_pred CCCCCCce----------------------------------eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 351 KPQADPIK----------------------------------LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 351 ~~~~~~~~----------------------------------~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
+....... ...|...+++++|+|+| ++|++++.|+.|+||++.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 337 NLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG-KLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-EEECBCTTSSCBCCBCCCCC
T ss_pred CCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC-eEEEEeCCCCeEEEEEeccC
Confidence 76532211 11166788899999999 89999999999999999864
No 42
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-39 Score=307.31 Aligned_cols=298 Identities=10% Similarity=0.052 Sum_probs=220.9
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCC-------cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDG-------YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
-||++|+| +|||++||+|+.+. .|+||+++........ .........+.+|...|.+++++ +..+
T Consensus 15 ~PV~sv~f---s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~---~~~~~~~~~l~~~~~~v~s~~~~--~~~~ 86 (365)
T 4h5i_A 15 YPAYGAKF---LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE---QFHILSEFALEDNDDSPTAIDAS--KGII 86 (365)
T ss_dssp SCEEEEEE---EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH---HEEEEEEEECCTTSCCCCEEEEE--TTEE
T ss_pred CCEEEEEE---eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee---eeeeeeEEEccCCCCceEEEEeC--CCEE
Confidence 48999999 99999999997543 5999998765431110 00111223567888999888775 5566
Q ss_pred EEEe-----------CCCcEEEEeCCCCeee----e-----cccCcCCCEEEEEeeCCCCCeEE--EEeCCCcEEEEeCC
Q 010390 124 LTAS-----------GDQTIKIWDAEKKKCT----G-----ALMGHTGSIKSLCSHPTNSDILV--SGSRDGSFAIWDLR 181 (512)
Q Consensus 124 ~s~~-----------~dg~i~iwd~~~~~~~----~-----~~~~h~~~v~~l~~~~~~~~~l~--s~~~dg~i~vwd~~ 181 (512)
++|. .|+.+++|++...... . ....+...+.+++|+|++ ++++ +++.|++|++||+.
T Consensus 87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETT
T ss_pred EEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECC
Confidence 6653 4778999997654321 1 112345568999999998 6655 44578999999998
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~ 261 (512)
+++... . ..|...|.+++|+|+++.+++++ ++.+.+|+..++......
T Consensus 166 ~~~~~~---------------------------~-~~~~~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~~~~~~-- 213 (365)
T 4h5i_A 166 DLTEKF---------------------------E-IETRGEVKDLHFSTDGKVVAYIT--GSSLEVISTVTGSCIARK-- 213 (365)
T ss_dssp TTEEEE---------------------------E-EECSSCCCEEEECTTSSEEEEEC--SSCEEEEETTTCCEEEEE--
T ss_pred CCcEEE---------------------------E-eCCCCceEEEEEccCCceEEecc--ceeEEEEEeccCcceeee--
Confidence 654321 1 13667899999999999988754 566777777766654432
Q ss_pred CCccccccccccccCeeEEEeCCCCCEEEEEecCC----eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390 262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH----RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 337 (512)
....|...|.+++|+|++.++++++.|+ .+++|++...................+.+++|+|+|++||+
T Consensus 214 -------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 214 -------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp -------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred -------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence 3455667899999999999999999887 68889886543333222222333456889999999999999
Q ss_pred ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
|+.|++|+|||+.+++.....+.+|...|++|+|+||+ ++|+|||.|++|+|||+....
T Consensus 287 gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCTTT
T ss_pred EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCC
Confidence 99999999999998876434468999999999999999 899999999999999996543
No 43
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.4e-38 Score=288.22 Aligned_cols=261 Identities=13% Similarity=0.205 Sum_probs=208.8
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CCC
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--EDT 121 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~ 121 (512)
..+.||.+.|.+++| +|+|++||+|+.||.|+|||+.+.. ...+..+.+|.+.|++++|++ +++
T Consensus 3 ~~~~~h~~~V~~~~~---s~~g~~las~s~D~~v~iw~~~~~~-----------~~~~~~l~gH~~~V~~v~~s~~~~g~ 68 (297)
T 2pm7_B 3 VIANAHNEMIHDAVM---DYYGKRMATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGT 68 (297)
T ss_dssp EECCSCSSCEEEEEE---CTTSSEEEEEETTSCEEEEEBCSSC-----------BCCCEEECCCSSCEEEEEECCGGGCS
T ss_pred eeccCCcCceEEEEE---CCCCCEEEEEeCCCEEEEEecCCCC-----------cEEEEEEccccCCeEEEEecCCCcCC
Confidence 457899999999999 9999999999999999999986432 133677899999999999986 489
Q ss_pred EEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 122 NILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
+|++|+.|++|+|||+.+++ .+..+.+|...|.+++|+|+. +.+|++++.|+.|++||++......
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~----------- 137 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS----------- 137 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-----------
T ss_pred EEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-----------
Confidence 99999999999999998874 556678899999999999972 3899999999999999997643211
Q ss_pred ccccccccccccccceecccccccEEEEEEeecC-------------CEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE-------------VSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 265 (512)
...+..|...|.+++|+|++ ..+++ |+.|+.|++||+++........
T Consensus 138 --------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~----- 197 (297)
T 2pm7_B 138 --------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLE----- 197 (297)
T ss_dssp --------------CEEEECCSSCEEEEEECCCC------------CCEEEE-EETTSCEEEEEEETTTTEEEEE-----
T ss_pred --------------eeeeecccCccceEeecCCcccccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEE-----
Confidence 11345778899999999973 45555 6689999999998765321110
Q ss_pred ccccccccccCeeEEEeCCCC---CEEEEEecCCeEEEEEcccCCCCce-EeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390 266 SSSAKETRLHGISSLSQDSNG---VFLTASCMDHRIYLYNVLQLDKGPI-QHFSGCRIESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 341 (512)
..+.+|...|.+++|+|++ .+|++++.|++|++||+........ ..+........+.+++|+|++++|++++.|
T Consensus 198 --~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 198 --STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp --EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred --EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 0466788999999999985 8999999999999999876432222 122112334668899999999999999999
Q ss_pred CCEEEEecCC
Q 010390 342 GNAYVWQVNK 351 (512)
Q Consensus 342 g~i~iw~~~~ 351 (512)
+.|+||+...
T Consensus 276 ~~v~lw~~~~ 285 (297)
T 2pm7_B 276 NKVTLWKENL 285 (297)
T ss_dssp SCEEEEEECT
T ss_pred CcEEEEEECC
Confidence 9999999763
No 44
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=297.65 Aligned_cols=261 Identities=19% Similarity=0.318 Sum_probs=212.4
Q ss_pred cceeccccCCC-cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee---cccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390 99 ARISDWVAHQN-AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG---ALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174 (512)
Q Consensus 99 ~~~~~~~~h~~-~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 174 (512)
..+.++.+|.+ .|++++|+|++++|++|+.|++|+|||+.+++... ...+|...|.+++|+|++ .+|++|+.|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCc
Confidence 44677889988 99999999999999999999999999998876432 236899999999999988 89999999999
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
|++||+..... .....+.+|...|.+++|+|+++.+++ |+.|+.|++||+++..
T Consensus 85 v~iw~~~~~~~-------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s-~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 85 TCIWKKNQDDF-------------------------ECVTTLEGHENEVKSVAWAPSGNLLAT-CSRDKSVWVWEVDEED 138 (345)
T ss_dssp EEEEEECCC-E-------------------------EEEEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEEECTTS
T ss_pred EEEEEccCCCe-------------------------EEEEEccCCCCCceEEEEeCCCCEEEE-EECCCeEEEEECCCCC
Confidence 99999875421 122355688999999999999998887 4589999999998764
Q ss_pred ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE
Q 010390 255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH 334 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 334 (512)
..... .....|...|.+++|+|++.+|++++.|+.|++||+..........+.+| ...+.+++|+|++++
T Consensus 139 ~~~~~--------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~ 208 (345)
T 3fm0_A 139 EYECV--------SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQR 208 (345)
T ss_dssp CEEEE--------EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSE
T ss_pred CeEEE--------EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCE
Confidence 32211 03567788899999999999999999999999999876433334455554 456889999999999
Q ss_pred EEEecCCCCEEEEecCCCCCC--------------Cceecc-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 335 ILSGSSDGNAYVWQVNKPQAD--------------PIKLKS-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 335 l~~g~~dg~i~iw~~~~~~~~--------------~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
|++|+.|++|++|+....... ...+.+ |...|.+++|+|++ ..|++++.|+.|++|+...+.
T Consensus 209 l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 209 LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTS
T ss_pred EEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCC
Confidence 999999999999997543211 112233 88899999999999 899999999999999988764
No 45
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-37 Score=298.94 Aligned_cols=289 Identities=18% Similarity=0.293 Sum_probs=233.8
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI 132 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 132 (512)
.+.|+| |++ ++||+|. |++|+|||..++.. ..+..+.+|...|++|+|+|+|++|++|+.||+|
T Consensus 108 ~~~l~w---S~~-n~lAvgl-d~tV~lWd~~tg~~-----------~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v 171 (420)
T 4gga_A 108 LNLVDW---SSG-NVLAVAL-DNSVYLWSASSGDI-----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 171 (420)
T ss_dssp CBCEEE---CTT-SEEEEEE-TTEEEEEETTTCCE-----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred ceeEEE---CCC-CEEEEEe-CCEEEEEECCCCCE-----------EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeE
Confidence 455777 865 5888886 89999999988753 2244566888999999999999999999999999
Q ss_pred EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390 133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR 212 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (512)
+|||+.+++++..+.+|...+.++++++ .+|++|+.|+.+++||...... .
T Consensus 172 ~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~--------------------------~ 222 (420)
T 4gga_A 172 QLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH--------------------------H 222 (420)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC--------------------------E
T ss_pred EEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccce--------------------------e
Confidence 9999999999999999999999998864 7899999999999999875432 2
Q ss_pred ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEE
Q 010390 213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTA 291 (512)
Q Consensus 213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 291 (512)
...+..|...+..+.+++++..+++++ .|+.+++||..+++...... .....+...|.+++|+|++. ++++
T Consensus 223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~-~D~~v~i~~~~~~~~~~~~~-------~~~~~~~~~V~~~~~~p~~~~~la~ 294 (420)
T 4gga_A 223 VATLSGHSQEVCGLRWAPDGRHLASGG-NDNLVNVWPSAPGEGGWVPL-------QTFTQHQGAVKAVAWCPWQSNVLAT 294 (420)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESSCCSSCSCCS-------EEECCCSSCEEEEEECTTCTTEEEE
T ss_pred eEEecccccceeeeeecCCCCeeeeee-ccccceEEeeccccccceee-------eeecccCCceeeeeeCCCcccEEEE
Confidence 234567888999999999999988754 89999999998765432111 13566778899999999664 5554
Q ss_pred --EecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec--CCCCEEEEecCCCCCCCceeccccCCeE
Q 010390 292 --SCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS--SDGNAYVWQVNKPQADPIKLKSHDGEVT 367 (512)
Q Consensus 292 --~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 367 (512)
|+.|+.|++||+.+.. ....+.. ...+.++.|+++++.+++++ .|+.|+|||+.+++. +..+.+|.+.|+
T Consensus 295 ~~gs~D~~I~iwd~~t~~--~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~-v~~l~gH~~~V~ 368 (420)
T 4gga_A 295 GGGTSDRHIRIWNVCSGA--CLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-VAELKGHTSRVL 368 (420)
T ss_dssp EECTTTCEEEEEETTTTE--EEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-EEEECCCSSCEE
T ss_pred EeecCCCEEEEEeCCccc--cceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE-EEEEcCCCCCEE
Confidence 3579999999987642 3333332 24577889999999887654 789999999998876 578899999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 368 AVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
+++|+|++ .+|+||+.|++|+|||+......+.
T Consensus 369 ~l~~spdg-~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 369 SLTMSPDG-ATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp EEEECTTS-SCEEEEETTTEEEEECCSCSSCC--
T ss_pred EEEEcCCC-CEEEEEecCCeEEEEECCCCCccch
Confidence 99999999 8999999999999999987665443
No 46
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5e-39 Score=305.20 Aligned_cols=309 Identities=15% Similarity=0.165 Sum_probs=239.3
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
....+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++ .+|++|+.|+.+++||
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEE
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEE
Confidence 367789999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~ 259 (512)
+........ .......+.+|...+.++.|.|++...+++|+.|+.|++||+++++.....
T Consensus 137 ~~~~~~~~~--------------------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 137 LSSQADRDG--------------------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp CCCCSSCCC--------------------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred CCCCccccC--------------------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 975432110 011122456888999999999986654555778999999999988765433
Q ss_pred cCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 338 (512)
... ...+|...|.++.+++ ++.+|++|+.|+.|++||++.. ...+..+.+|. ..+.+++|+|++++|++|
T Consensus 197 ~~~------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 197 GSE------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-SRAVRTYHGHE--GDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp CCC------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-CCCCEEECCCS--SCCCEEEECTTSSEEEEE
T ss_pred ecc------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-CcceEEECCcC--CCeEEEEEecCCCeEEEE
Confidence 111 1256778899999987 8899999999999999998643 23455555553 457889999999999999
Q ss_pred cCCCCEEEEecCCCCCCCceeccc-------cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCcccccee
Q 010390 339 SSDGNAYVWQVNKPQADPIKLKSH-------DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRV 411 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 411 (512)
+.||+|++||+.++... ..+..+ ...|++++|+|++ .+|++|+.||.|++||+..++....+..
T Consensus 268 s~D~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~------- 338 (380)
T 3iz6_a 268 SDDGTCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGT------- 338 (380)
T ss_dssp CSSSCEEEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECC-------
T ss_pred cCCCeEEEEECCCCcEE-EEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEec-------
Confidence 99999999999987652 333332 2358999999999 8999999999999999988876543211
Q ss_pred eeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390 412 MAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP 462 (512)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 462 (512)
....+...+. .++|+||+.+++.++... .+.+|...
T Consensus 339 -------------~~~~h~~~v~-~l~~s~dg~~l~sgs~D~-~i~iW~~~ 374 (380)
T 3iz6_a 339 -------------LQNSHEGRIS-CLGLSSDGSALCTGSWDK-NLKIWAFS 374 (380)
T ss_dssp -------------SCSSCCCCCC-EEEECSSSSEEEEECTTS-CEEEEECC
T ss_pred -------------ccCCCCCceE-EEEECCCCCEEEEeeCCC-CEEEEecC
Confidence 0011122223 678888888887775543 34455543
No 47
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-37 Score=286.67 Aligned_cols=290 Identities=20% Similarity=0.262 Sum_probs=239.3
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.+...+.||.++|.+++| |++++||+|+.||.|++||+.+.. ....+..|...|.+++|+|++
T Consensus 9 ~~~~~l~~h~~~v~~~~~----~~~~~l~s~~~dg~v~vw~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~ 71 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA----VDDSKVASVSRDGTVRLWSKDDQW-------------LGTVVYTGQGFLNSVCYDSEK 71 (313)
T ss_dssp EEEEEECCCSSCEEEEEE----EETTEEEEEETTSEEEEEEESSSE-------------EEEEEEECSSCEEEEEEETTT
T ss_pred HHHHHhhCCCCCcEEEEe----cCCCEEEEEEcCCcEEEEECCCCE-------------EEEEeecCCccEEEEEECCCC
Confidence 566788999999999987 578899999999999999997653 356677899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 121 TNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
++|++++.||.|++|++... +.+..+.+|...|.+++|. + .++++++.||.|++||..
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~~---------------- 132 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKEG---------------- 132 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETT----------------
T ss_pred CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEcCC----------------
Confidence 99999999999999998754 5677788999999999994 4 799999999999999921
Q ss_pred cccccccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
........|...+.++.|.+ ++..+++ ++.||.|++||....... ....+...
T Consensus 133 -------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~------------~~~~~~~~ 186 (313)
T 3odt_A 133 -------------SLVYNLQAHNASVWDAKVVSFSENKFLT-ASADKTIKLWQNDKVIKT------------FSGIHNDV 186 (313)
T ss_dssp -------------EEEEEEECCSSCEEEEEEEETTTTEEEE-EETTSCEEEEETTEEEEE------------ECSSCSSC
T ss_pred -------------cEEEecccCCCceeEEEEccCCCCEEEE-EECCCCEEEEecCceEEE------------EeccCccc
Confidence 11224456788999999999 7777766 558999999994432221 12226678
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
+.+++|+|++. +++++.||.|++||++.. ..+..+..+ ...+.+++|+|++ .|++++.||.|++||+.+++. .
T Consensus 187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~--~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~-~ 259 (313)
T 3odt_A 187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTG--DVLRTYEGH--ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL-K 259 (313)
T ss_dssp EEEEEEEETTE-EEEEETTSEEEEEETTTC--CEEEEEECC--SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE-E
T ss_pred EEEEEEcCCCe-EEEccCCCeEEEEECCch--hhhhhhhcC--CceEEEEEEecCC-CEEEEecCCEEEEEECCCCce-e
Confidence 99999999998 999999999999999763 345555544 3568899999999 588999999999999998876 4
Q ss_pred ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
..+..|...|++++|+|++ . +++++.||.|++||+.+++....
T Consensus 260 ~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 260 QVITLPAISIWSVDCMSNG-D-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp EEEECSSSCEEEEEECTTS-C-EEEEETTSCEEEEESCGGGCCC-
T ss_pred EEEeccCceEEEEEEccCC-C-EEEEeCCCcEEEEeCCCCceeeh
Confidence 6778899999999999998 5 77899999999999999887664
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.7e-38 Score=295.66 Aligned_cols=289 Identities=16% Similarity=0.243 Sum_probs=238.0
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
|.++|.+++| +|||++++++..++.+.+|+.... .......+|.+.|++++|+|++++|++++
T Consensus 8 ~~~~v~~~~~---s~dg~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~- 70 (337)
T 1gxr_A 8 GSKPAYSFHV---TADGQMQPVPFPPDALIGPGIPRH-------------ARQINTLNHGEVVCAVTISNPTRHVYTGG- 70 (337)
T ss_dssp EEEECCEEEE---CSSSCEEECCCCTTSSSSTTCCSE-------------EEEEEEECCSSCCCEEEECSSSSEEEEEC-
T ss_pred cCCceeEEEE---CCCCCEEEeecCCCcEeccccCCc-------------cccceeccCCCceEEEEEecCCcEEEEcC-
Confidence 5678899999 999999999988887766654322 12333457999999999999999999998
Q ss_pred CCcEEEEeCCCCeeeeccc-----CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 129 DQTIKIWDAEKKKCTGALM-----GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
||.|++||+.+++....+. .|...|.+++|+|++ ++|++++.||.|++||+++++..
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~----------------- 132 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPR----------------- 132 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--E-----------------
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcc-----------------
Confidence 9999999998876443332 688999999999987 89999999999999999865421
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
.......|...+.+++|+|++..++++ +.||.|++||+++++... ....|...+.+++|+
T Consensus 133 --------~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~-----------~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 133 --------IKAELTSSAPACYALAISPDSKVCFSC-CSDGNIAVWDLHNQTLVR-----------QFQGHTDGASCIDIS 192 (337)
T ss_dssp --------EEEEEECSSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEE-----------EECCCSSCEEEEEEC
T ss_pred --------eeeecccCCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceee-----------eeecccCceEEEEEC
Confidence 122445677889999999999988874 489999999999876554 345677889999999
Q ss_pred CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc
Q 010390 284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD 363 (512)
Q Consensus 284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~ 363 (512)
|++.+|++++.||.|++||++... ....+ .....+.+++|+|++++|++++.++.|++||+.+.+. ..+..|.
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~ 265 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGR--QLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHE 265 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTE--EEEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--EEECCCS
T ss_pred CCCCEEEEEecCCcEEEEECCCCc--eEeee---cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--EEEcCCc
Confidence 999999999999999999987642 22222 2345678899999999999999999999999988754 4678899
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
..|.+++|+|++ .+|++++.||.|++||+.+++.+.
T Consensus 266 ~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 266 SCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE
T ss_pred cceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEEE
Confidence 999999999999 899999999999999999887653
No 49
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=309.28 Aligned_cols=298 Identities=11% Similarity=0.145 Sum_probs=230.5
Q ss_pred eeeeeeEeec-CCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCC---CCCccccccccccccceeccccCCCcE
Q 010390 37 TEIGAVTVEH-HGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRR---KLPSFACHRENAEKARISDWVAHQNAI 111 (512)
Q Consensus 37 ~~~~~~~~~~-~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V 111 (512)
...+.+...+ .+|.++|.+|+| +| ++++||+|+.||.|+|||+.+ +.. ......+ +|...|
T Consensus 49 ~~~g~~~~~~~~~h~~~V~~~~~---s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----------~~~~~~~-~h~~~v 114 (437)
T 3gre_A 49 NLRGKLIATLMENEPNSITSSAV---SPGETPYLITGSDQGVIKIWNLKEIIVGEV----------YSSSLTY-DCSSTV 114 (437)
T ss_dssp GCCCCEEEEECTTTTSCEEEEEE---ECSSSCEEEEEETTSEEEEEEHHHHHTTCC----------CSCSEEE-ECSSCE
T ss_pred cccceEEeeeccCCCCceEEEEE---CCCCCCEEEEecCCceEEEeECcccccCcc----------cceeeec-cCCCCE
Confidence 3446667777 899999999999 99 999999999999999999875 211 0112222 599999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCC---CCeeeecccC------------cCCCEEEEE--eeCCCCCeEEEEeCCCc
Q 010390 112 FDLCWIKEDTNILTASGDQTIKIWDAE---KKKCTGALMG------------HTGSIKSLC--SHPTNSDILVSGSRDGS 174 (512)
Q Consensus 112 ~~l~~s~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~------------h~~~v~~l~--~~~~~~~~l~s~~~dg~ 174 (512)
++++|+|++++|++|+.||.|++||+. +++....+.. +...+.++. +++++ .+|++++.||.
T Consensus 115 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~ 193 (437)
T 3gre_A 115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSR 193 (437)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSE
T ss_pred EEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCe
Confidence 999999999999999999999999995 5544433322 445666666 44666 89999999999
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceeccc--ccccEEEEEEeecCCEEEEEeecCCeEEEEeccC
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA--ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN 252 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~ 252 (512)
|++||+++++... .+.. |...|.+++|+|++..+++ |+.||.|++||+++
T Consensus 194 i~iwd~~~~~~~~---------------------------~~~~~~h~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 194 VIIFDIRTLERLQ---------------------------IIENSPRHGAVSSICIDEECCVLIL-GTTRGIIDIWDIRF 245 (437)
T ss_dssp EEEEETTTCCEEE---------------------------EEECCGGGCCEEEEEECTTSCEEEE-EETTSCEEEEETTT
T ss_pred EEEEeCCCCeeeE---------------------------EEccCCCCCceEEEEECCCCCEEEE-EcCCCeEEEEEcCC
Confidence 9999998754322 2333 7789999999999998887 55899999999998
Q ss_pred ccceecccCCCccccccccccccCeeEEEe----CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec-----------
Q 010390 253 LKAQITQAWPHAESSSAKETRLHGISSLSQ----DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC----------- 317 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------- 317 (512)
++..... ...+...|.+++| ++++.+|++++.||.|++||+.+.. ....+.++
T Consensus 246 ~~~~~~~----------~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 246 NVLIRSW----------SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH--CQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp TEEEEEE----------BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE--EEEEEESSSSCCCGGGGSC
T ss_pred ccEEEEE----------ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc--EEEEEEcCCCCCccceecc
Confidence 7765432 1245567999955 4578899999999999999997543 22333322
Q ss_pred -------------eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc-----------------------
Q 010390 318 -------------RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS----------------------- 361 (512)
Q Consensus 318 -------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~----------------------- 361 (512)
.....+.+++|+ ++++|++|+.|+.|++||+.+++.. ..+.+
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS-KAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC-EEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred cccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc-eEEecccccCceEEEEEeecceEEEEEe
Confidence 134457788999 7899999999999999999887653 33333
Q ss_pred --------------ccCCeEEEEeCCC--CCCeEEEEeCCCcEEEEe
Q 010390 362 --------------HDGEVTAVNWCPN--EAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 362 --------------h~~~v~~v~~~~~--~~~~l~s~~~dg~i~vwd 392 (512)
|.+.|++++|+++ + .+|++|+.||.|+||+
T Consensus 392 ~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~-~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 MKRTSTHSVDDSLYHHDIINSISTCEVDET-PLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC-------------CCCEEEEEEEESSSS-EEEEEEETTSCEEEEC
T ss_pred cccccccccCcccccccceeeEeeeccCCc-eEEEEEcCCceEEEeC
Confidence 8899999999998 5 7999999999999995
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.3e-37 Score=302.65 Aligned_cols=328 Identities=16% Similarity=0.247 Sum_probs=252.8
Q ss_pred eEeecCCccCCc-ceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 42 VTVEHHGEETPP-LAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 42 ~~~~~~gh~~~v-~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
....+.||.+.+ .++.+ ++++|++|+.||.|++||+.+++ .+..+.+|.+.|++++|+|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~-----~~~~l~sgs~dg~i~vwd~~~~~-------------~~~~~~~h~~~V~~l~~~~~~ 174 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKK-------------FLLQLSGHDGGVWALKYAHGG 174 (464)
T ss_dssp EEEEEECCSSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECSTT
T ss_pred ceEEEcCCCCCcEEEEEE-----CCCEEEEEcCCCcEEEEECCCCc-------------EEEEEeCCCcCEEEEEEcCCC
Confidence 345778998886 45544 67899999999999999997763 377788999999999999887
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeC--CCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHP--TNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
+|++|+.||+|++||+.+++++..+.+|...|.+++|++ ++ .++++++.||.|++||+++................
T Consensus 175 -~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 175 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred -EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 999999999999999999999999999999999999995 44 89999999999999999877654322111000000
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
.. .............+|...+.++ ++++..+++ |+.|+.|++||+++++... ....|...|.
T Consensus 253 ~~----~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~-~~~d~~i~vwd~~~~~~~~-----------~~~~~~~~v~ 314 (464)
T 3v7d_B 253 FH----TPEENPYFVGVLRGHMASVRTV--SGHGNIVVS-GSYDNTLIVWDVAQMKCLY-----------ILSGHTDRIY 314 (464)
T ss_dssp ES----CGGGCTTEEEEECCCSSCEEEE--EEETTEEEE-EETTSCEEEEETTTTEEEE-----------EECCCSSCEE
T ss_pred ee----ccCCCeEEEEEccCccceEEEE--cCCCCEEEE-EeCCCeEEEEECCCCcEEE-----------EecCCCCCEE
Confidence 00 0000111233556777888877 577888877 5589999999999877665 3566788899
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
+++|+|++.++++++.||.|++||+.+. ..+..+.++ ...+.+++|+ +++|++|+.||.|++||+.+.... .
T Consensus 315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~--~ 386 (464)
T 3v7d_B 315 STIYDHERKRCISASMDTTIRIWDLENG--ELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--F 386 (464)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTTT--EEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE--E
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee--e
Confidence 9999999999999999999999998763 345555554 3457778887 589999999999999999886542 2
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccch
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTE 418 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (512)
...|...+..++|++++ .+|++++ ||.|++||+.+++++...... ....++.+.+++
T Consensus 387 ~~~~~~~~~~~~~~~~~-~~l~~~~-dg~i~iwd~~~g~~~~~~~~~-~~~~v~~v~~~~ 443 (464)
T 3v7d_B 387 SYHHTNLSAITTFYVSD-NILVSGS-ENQFNIYNLRSGKLVHANILK-DADQIWSVNFKG 443 (464)
T ss_dssp EEECTTCCCEEEEEECS-SEEEEEE-TTEEEEEETTTCCEEESCTTT-TCSEEEEEEEET
T ss_pred eecCCCCccEEEEEeCC-CEEEEec-CCeEEEEECCCCcEEehhhcc-CCCcEEEEEecC
Confidence 23466778889999999 8999988 899999999999988753322 245666666653
No 51
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-37 Score=290.85 Aligned_cols=262 Identities=14% Similarity=0.234 Sum_probs=219.3
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
....+.+|.+.|++++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|++ .+|++++.|+.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYP 134 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEE
Confidence 366788999999999999999999999999999999999999888888899999999999998 9999999999999999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~ 259 (512)
+........ ......+..|...|.++.|+|++..++++ +.|+.|++||+++++...
T Consensus 135 ~~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~D~~v~lwd~~~~~~~~-- 190 (354)
T 2pbi_B 135 LTFDKNENM---------------------AAKKKSVAMHTNYLSACSFTNSDMQILTA-SGDGTCALWDVESGQLLQ-- 190 (354)
T ss_dssp CCCCTTCCS---------------------GGGCEEEEECSSCEEEEEECSSSSEEEEE-ETTSEEEEEETTTCCEEE--
T ss_pred Eeccccccc---------------------cccceeeeccCCcEEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCeEEE--
Confidence 875432110 11223455788999999999999998874 479999999999887654
Q ss_pred cCCCccccccccccccCeeEEEeCC--CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDS--NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 337 (512)
.+..|...|.+++++| ++.+|++++.||.|++||+++. ..+..+..| ...+.+++|+|++++|++
T Consensus 191 ---------~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~--~~~~~~~~h--~~~v~~v~~~p~~~~l~s 257 (354)
T 2pbi_B 191 ---------SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG--QCVQAFETH--ESDVNSVRYYPSGDAFAS 257 (354)
T ss_dssp ---------EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECTTSSEEEE
T ss_pred ---------EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--cEEEEecCC--CCCeEEEEEeCCCCEEEE
Confidence 4667888899999987 5789999999999999999764 344555544 356889999999999999
Q ss_pred ecCCCCEEEEecCCCCCCCceecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
|+.|++|++||++..... ..+.. +...+.+++|+|++ .+|++|+.|+.|++||+.+++.+..
T Consensus 258 ~s~D~~v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~ 321 (354)
T 2pbi_B 258 GSDDATCRLYDLRADREV-AIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRVSI 321 (354)
T ss_dssp EETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEE
T ss_pred EeCCCeEEEEECCCCcEE-EEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceEEE
Confidence 999999999999876542 33332 34578999999999 8999999999999999988875543
No 52
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-37 Score=297.16 Aligned_cols=297 Identities=15% Similarity=0.268 Sum_probs=235.1
Q ss_pred eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCC
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKED 120 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~ 120 (512)
......+|.+.+....+ ++++..+++++.||.|+|||+.++.. ...+. .|...|++++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~---~~s~~~l~~~~~d~~v~lw~~~~~~~-------------~~~~~~~~~~~v~~v~~s~~~ 146 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLL---DWSNLNVVAVALERNVYVWNADSGSV-------------SALAETDESTYVASVKWSHDG 146 (401)
T ss_dssp EEEECTTCCCCTTCBCE---EECTTSEEEEEETTEEEEEETTTCCE-------------EEEEECCTTCCEEEEEECTTS
T ss_pred eeeeCCCCcCCceEEEE---eecCCCEEEEECCCeEEEeeCCCCcE-------------eEeeecCCCCCEEEEEECCCC
Confidence 34555677776554333 22345577788899999999987643 22233 388999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
++|++|+.||.|++||+.+++.+..+.+|...|.+++|++ .+|++++.||.|++||++....
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~--------------- 208 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANH--------------- 208 (401)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC---------------
T ss_pred CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcc---------------
Confidence 9999999999999999999999999999999999999953 7999999999999999984321
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
....+..|...|.+++|+|++..+++ |+.|+.|++||+++..... ....|...|.++
T Consensus 209 -----------~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~~-----------~~~~~~~~v~~~ 265 (401)
T 4aez_A 209 -----------QIGTLQGHSSEVCGLAWRSDGLQLAS-GGNDNVVQIWDARSSIPKF-----------TKTNHNAAVKAV 265 (401)
T ss_dssp -----------EEEEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTCSSEEE-----------EECCCSSCCCEE
T ss_pred -----------eeeEEcCCCCCeeEEEEcCCCCEEEE-EeCCCeEEEccCCCCCccE-----------EecCCcceEEEE
Confidence 12245578889999999999998887 4589999999999876654 355677889999
Q ss_pred EeCCCCC-EEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE--ecCCCCEEEEecCCCCCC
Q 010390 281 SQDSNGV-FLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS--GSSDGNAYVWQVNKPQAD 355 (512)
Q Consensus 281 ~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg~i~iw~~~~~~~~ 355 (512)
+|+|++. ++++++ .|+.|++||+.+. ..+..+. ....+.+++|+|++++|++ |+.||.|++|++.++...
T Consensus 266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 266 AWCPWQSNLLATGGGTMDKQIHFWNAATG--ARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp EECTTSTTEEEEECCTTTCEEEEEETTTC--CEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred EECCCCCCEEEEecCCCCCEEEEEECCCC--CEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence 9999765 555654 7999999998763 3333333 2346889999999999998 668999999999886432
Q ss_pred -CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 356 -PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 356 -~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
...+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..
T Consensus 341 ~~~~~~~h~~~v~~~~~s~dg-~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 341 KQVDIPAHDTRVLYSALSPDG-RILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEEECCSSCCCEEEECTTS-SEEEEECTTSEEEEEECCC------
T ss_pred eEEEecCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCccccc
Confidence 23467899999999999999 8999999999999999999987664
No 53
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.2e-37 Score=282.45 Aligned_cols=256 Identities=19% Similarity=0.227 Sum_probs=206.8
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC--CeeeecccCcCCCEEEEEeeCC-CCCeEEEEeCCCcEEE
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK--KKCTGALMGHTGSIKSLCSHPT-NSDILVSGSRDGSFAI 177 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~v 177 (512)
+..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+ .+++.++.+|.+.|++++|++. .+.+|++|+.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 345679999999999999999999999999999999974 3678889999999999999864 2389999999999999
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCccc
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLKA 255 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~~ 255 (512)
||++++.... ...+..|...|.+++|+|+ +..+++ ++.|+.|++||+++...
T Consensus 82 Wd~~~~~~~~-------------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s-~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 82 WKEENGRWSQ-------------------------IAVHAVHSASVNSVQWAPHEYGPMLLV-ASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EEBSSSCBCC-------------------------CEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEEBCSSSC
T ss_pred EEcCCCceEE-------------------------EEEeecCCCceeEEEeCcCCCCcEEEE-EECCCcEEEEEecCCCc
Confidence 9998653211 1134467889999999997 666766 56899999999987532
Q ss_pred eecccCCCccccccccccccCeeEEEeCCC-------------CCEEEEEecCCeEEEEEcccCCCC--ceEeeeeceec
Q 010390 256 QITQAWPHAESSSAKETRLHGISSLSQDSN-------------GVFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRIE 320 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~ 320 (512)
.... ....|...|.+++|+|+ +++|++++.|+.|++||++..... ....+.+| .
T Consensus 136 ~~~~---------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H--~ 204 (297)
T 2pm7_B 136 TSPI---------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--S 204 (297)
T ss_dssp BCCE---------EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--S
T ss_pred eeee---------eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC--C
Confidence 2111 45678889999999997 579999999999999999764322 23344444 4
Q ss_pred eeEEEEEECCCC---CEEEEecCCCCEEEEecCCCCCCC--cee--ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 321 SFYVKSEICPNA---SHILSGSSDGNAYVWQVNKPQADP--IKL--KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 321 ~~~~~~~~s~~~---~~l~~g~~dg~i~iw~~~~~~~~~--~~~--~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
..+.+++|+|++ ++|++|+.|++|+|||+....... ..+ ..|...|.+++|+|++ .+|++++.||.|++|+.
T Consensus 205 ~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 205 DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKE 283 (297)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEE
T ss_pred CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEE
Confidence 568899999984 899999999999999998753211 122 4678899999999999 89999999999999997
Q ss_pred C
Q 010390 394 E 394 (512)
Q Consensus 394 ~ 394 (512)
.
T Consensus 284 ~ 284 (297)
T 2pm7_B 284 N 284 (297)
T ss_dssp C
T ss_pred C
Confidence 6
No 54
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6e-38 Score=343.07 Aligned_cols=363 Identities=20% Similarity=0.317 Sum_probs=269.7
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK- 118 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~- 118 (512)
+.....+.+|.+.|.+++| +|+|++||+|+.||.|+|||+.++. .+..+.+|...|.+++|+|
T Consensus 647 ~~~~~~~~~h~~~v~~~~~---s~~~~~l~s~~~d~~v~vwd~~~~~-------------~~~~~~~~~~~v~~~~~~~~ 710 (1249)
T 3sfz_A 647 GEKLLDIKAHEDEVLCCAF---SSDDSYIATCSADKKVKIWDSATGK-------------LVHTYDEHSEQVNCCHFTNK 710 (1249)
T ss_dssp CCEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEECSS
T ss_pred CCEEEEeccCCCCEEEEEE---ecCCCEEEEEeCCCeEEEEECCCCc-------------eEEEEcCCCCcEEEEEEecC
Confidence 3456677899999999999 9999999999999999999998764 3777889999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc----
Q 010390 119 -EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES---- 193 (512)
Q Consensus 119 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---- 193 (512)
++.++++|+.|+.|++||+.+++++..+.+|.+.|++++|+|++ .+|++++.||.|++||+.++..........
T Consensus 711 ~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 789 (1249)
T 3sfz_A 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789 (1249)
T ss_dssp SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--
T ss_pred CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccc
Confidence 55689999999999999999999999999999999999999988 899999999999999997653221110000
Q ss_pred ----------ee------------------------------------------eecccccccc--------------cc
Q 010390 194 ----------FV------------------------------------------FSSAVVKGAH--------------LL 207 (512)
Q Consensus 194 ----------~~------------------------------------------~~~~~~~~~~--------------~~ 207 (512)
.+ ....+.+.+. ..
T Consensus 790 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~ 869 (1249)
T 3sfz_A 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869 (1249)
T ss_dssp ------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEET
T ss_pred cCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Confidence 00 0000000000 00
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec-----------------------------
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT----------------------------- 258 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~----------------------------- 258 (512)
..........+|...|.+++|+|++..+++++ .||.|++||+.+......
T Consensus 870 ~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1249)
T 3sfz_A 870 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948 (1249)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEE
T ss_pred CCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEE
Confidence 11222345567889999999999999988754 799999999764211000
Q ss_pred ---------------------------------------ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390 259 ---------------------------------------QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299 (512)
Q Consensus 259 ---------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 299 (512)
..............|...|.+++|+|++++|++++.||.|+
T Consensus 949 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp EEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred EecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 00000011123456778899999999999999999999999
Q ss_pred EEEcccCCCC--------------------------------------ceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390 300 LYNVLQLDKG--------------------------------------PIQHFSGCRIESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 300 i~d~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 341 (512)
+||+.+.... ....+.+ ....+.+++|+|++++|++++.|
T Consensus 1029 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A 1029 VWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC--HQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp EEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC--CSSCCCCEEECSSSSSCEEECCS
T ss_pred EEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc--cCCcEEEEEECCCCCEEEEEcCC
Confidence 9997543210 0111111 22346678999999999999999
Q ss_pred CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCc-------cccceeeee
Q 010390 342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPS-------SVRRRVMAI 414 (512)
Q Consensus 342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~ 414 (512)
|.|++||+.++.. ...+.+|.+.|++++|+|++ .+|++++.||.|++||+.+++++....+. .+...+..+
T Consensus 1107 ~~v~iwd~~~~~~-~~~l~~h~~~v~~~~~s~dg-~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A 1107 KTAKIWSFDLLSP-LHELKGHNGCVRCSAFSLDG-ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp SCCCEECSSSSSC-SBCCCCCSSCEEEEEECSSS-SEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred CcEEEEECCCcce-eeeeccCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence 9999999988775 56788999999999999999 89999999999999999999987765321 223344445
Q ss_pred ccchhccccc
Q 010390 415 PSTECRKLFM 424 (512)
Q Consensus 415 ~~~~~~~~~~ 424 (512)
.+++...+++
T Consensus 1185 ~fs~dg~~l~ 1194 (1249)
T 3sfz_A 1185 CFSPDSKTLV 1194 (1249)
T ss_dssp EECTTSSCEE
T ss_pred EECCCCCEEE
Confidence 5555444443
No 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-37 Score=325.80 Aligned_cols=298 Identities=15% Similarity=0.228 Sum_probs=250.2
Q ss_pred eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
+...+.+|.+.|.+++| +|+|++||+|+.||.|+|||+.++. .+..+.+|.+.|++++|+|+++
T Consensus 5 ~~~~~~~h~~~v~~i~~---sp~~~~la~~~~~g~v~iwd~~~~~-------------~~~~~~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDF---HPTEPWVLTTLYSGRVEIWNYETQV-------------EVRSIQVTETPVRAGKFIARKN 68 (814)
T ss_dssp CEEEEEEECSCEEEEEE---CSSSSEEEEEETTSEEEEEETTTTE-------------EEEEEECCSSCEEEEEEEGGGT
T ss_pred cceeeecCCCceEEEEE---CCCCCEEEEEeCCCEEEEEECCCCc-------------eEEEEecCCCcEEEEEEeCCCC
Confidence 34567899999999999 9999999999999999999997753 3677889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
+|++|+.||.|+|||+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++||+.++.
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~----------------- 130 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNW----------------- 130 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTS-----------------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCc-----------------
Confidence 99999999999999999999999999999999999999998 899999999999999987542
Q ss_pred cccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
.....+..|...|.+++|+| ++..+++ ++.||.|++||+.+....... ...+...+.++
T Consensus 131 ---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~v~vwd~~~~~~~~~~----------~~~~~~~v~~~ 190 (814)
T 3mkq_A 131 ---------ALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQSTPNFTL----------TTGQERGVNYV 190 (814)
T ss_dssp ---------EEEEEEECCSSCEEEEEEETTEEEEEEE-EETTSEEEEEETTCSSCSEEE----------ECCCTTCCCEE
T ss_pred ---------eEEEEEcCCCCcEEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCcceeEE----------ecCCCCCEEEE
Confidence 11224557788999999999 6666665 668999999999876654432 23334779999
Q ss_pred EeCC--CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 281 SQDS--NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 281 ~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
+|+| ++.+|++++.||.|++||+... .....+.++ ...+.+++|+|++++|++++.||.|++||+.+++. ...
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~~ 265 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTK--SCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-EKT 265 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTT--EEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE-EEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCC--cEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEE
Confidence 9999 9999999999999999998653 334445444 35588899999999999999999999999988765 467
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
+..|...|.+++|+|++...+++++.|+.+.+|++..+..
T Consensus 266 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 266 LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp ECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred eecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 7888899999999999844445556677799999876554
No 56
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.5e-37 Score=291.90 Aligned_cols=315 Identities=18% Similarity=0.191 Sum_probs=226.3
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CCC
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--EDT 121 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~ 121 (512)
..+.||.+.|.+++| +|++++||+|+.||.|+|||+.+.... ......+.+|...|++++|+| +++
T Consensus 5 ~~~~gH~~~v~~~~~---~~~~~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVY---DFYGRHVATCSSDQHIKVFKLDKDTSN---------WELSDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CEECCCSSCEEEEEE---CSSSSEEEEEETTSEEEEEEECSSSCC---------EEEEEEEECCSSCEEEEEECCGGGCS
T ss_pred ccCcccccceeEEEE---cCCCCEEEEeeCCCeEEEEECCCCCCc---------ceecceeccCCCcEEEEEEcCCCCCC
Confidence 456799999999999 999999999999999999999865321 134667789999999999999 699
Q ss_pred EEEEEeCCCcEEEEeCCCC---------eeeecccCcCCCEEEEEeeCC--CCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390 122 NILTASGDQTIKIWDAEKK---------KCTGALMGHTGSIKSLCSHPT--NSDILVSGSRDGSFAIWDLRCKSSPKSNC 190 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 190 (512)
+|++|+.||.|++||+.++ +.+..+..|...|.+++|+|+ + .+|++++.||.|++||+++++......
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccc
Confidence 9999999999999999887 557788899999999999998 6 899999999999999999887655432
Q ss_pred ccceeeecccccccccccccccceecccccccEEEEEEeec---CCEEEEEeecCCeEEEEeccCccceecccCCCcccc
Q 010390 191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD---EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS 267 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 267 (512)
........ ......+...+.+++|+|+ +..+++ ++.++.+.+|+..........
T Consensus 152 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~-------- 208 (351)
T 3f3f_A 152 LTSEMKVL--------------SIPPANHLQSDFCLSWCPSRFSPEKLAV-SALEQAIIYQRGKDGKLHVAA-------- 208 (351)
T ss_dssp EEEEEESC--------------SCCCSSCSCCCEEEEECCCSSSCCEEEE-EETTEEEEEEECTTSCEEEEE--------
T ss_pred cccccccc--------------ccccCCcccceeEEEeccCCCCCcEEEE-ecCCCcEEEEccCCCceeeee--------
Confidence 21111100 0112356778999999997 666666 557999988887766542221
Q ss_pred ccccccccCeeEEEeCCCC----CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec----
Q 010390 268 SAKETRLHGISSLSQDSNG----VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS---- 339 (512)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---- 339 (512)
....|...|.+++|+|++ .+|++++.||.|++||++........ ... .........++....++.+.
T Consensus 209 -~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 283 (351)
T 3f3f_A 209 -KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS--EES--LTNSNMFDNSADVDMDAQGRSDSN 283 (351)
T ss_dssp -ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred -ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc--CCc--ccceeccCCCcccccccccccccc
Confidence 456678899999999998 89999999999999999764322111 111 11111223333333443333
Q ss_pred CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
....+.+|+....+. ...+.+|...|++++|+|++ .+|++++.||.|++||+.+++....
T Consensus 284 ~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 284 TEEKAELQSNLQVEL-LSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp -------CCSEEEEE-EEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cceeeeecccccccE-EEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCcchhh
Confidence 334455555444333 45678899999999999999 8999999999999999998865543
No 57
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=280.57 Aligned_cols=285 Identities=18% Similarity=0.285 Sum_probs=228.7
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI 132 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 132 (512)
.++|+| |+++ +||+|. |++|+|||+++++. .....+.+|...|++++|+|++++|++|+.||+|
T Consensus 28 ~~~l~W---S~~~-~lAvg~-D~tV~iWd~~tg~~-----------~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 28 LNLVDW---SSGN-VLAVAL-DNSVYLWSASSGDI-----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 91 (318)
T ss_dssp CBCEEE---CTTS-EEEEEE-TTEEEEEETTTCCE-----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceEEEE---CCCC-EEEEEe-CCEEEEEECCCCCE-----------EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 467888 8876 888875 99999999988743 2234456788999999999999999999999999
Q ss_pred EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390 133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR 212 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (512)
++||+++++++..+.+|...+.++.+.+ ..+++++.++.+++|+...... .
T Consensus 92 ~iw~~~~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~--------------------------~ 142 (318)
T 4ggc_A 92 QLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH--------------------------H 142 (318)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC--------------------------E
T ss_pred EEeecCCceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCce--------------------------e
Confidence 9999999999999999999998877653 7899999999999999875432 2
Q ss_pred ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEE---
Q 010390 213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL--- 289 (512)
Q Consensus 213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l--- 289 (512)
......|...+..+.+.+++..+++ ++.|+.|++||+++++....... ....+...|.++.+++++..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 143 VATLSGHSQEVCGLRWAPDGRHLAS-GGNDNLVNVWPSAPGEGGWVPLQ-------TFTQHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEESSCBTTBSCCSE-------EECCCCSCEEEEEECTTSTTEEEE
T ss_pred EEEEcCccCceEEEEEcCCCCEEEE-EecCcceeEEECCCCccccccee-------eecccCCceEEEEecCCCCcEEEE
Confidence 2345678889999999999998887 55899999999998764432211 345566789999999876533
Q ss_pred EEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe--cCCCCEEEEecCCCCCCCceeccccCCeE
Q 010390 290 TASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG--SSDGNAYVWQVNKPQADPIKLKSHDGEVT 367 (512)
Q Consensus 290 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 367 (512)
++++.++.|++||...... ... ......+..+.|+++++.++++ +.|+.|++||+.+++. +..+.+|.+.|+
T Consensus 215 ~~~~~~~~i~lwd~~~~~~--~~~---~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~-~~~l~gH~~~V~ 288 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSGAC--LSA---VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-VAELKGHTSRVL 288 (318)
T ss_dssp EECTTTCEEEEEETTTCCE--EEE---EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-EEEECCCSSCEE
T ss_pred EecCCCCEEEEEecccccc--ccc---ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE-EEEEcCCCCCEE
Confidence 4566889999999865322 111 1223446778999999888654 4799999999998876 578899999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 368 AVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+++|+|++ .+|+|||.||+|+|||+.+.+
T Consensus 289 ~l~~spdg-~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 289 SLTMSPDG-ATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEECTTS-SCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcCCC-CEEEEEecCCeEEEEECCCCC
Confidence 99999999 899999999999999997643
No 58
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.1e-37 Score=287.14 Aligned_cols=289 Identities=13% Similarity=0.131 Sum_probs=236.5
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC-EE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT-NI 123 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l 123 (512)
...+|.+.|.+++| +|++++|++|+.||.|+|||+.+... ......+.+|...|++++|+|+++ +|
T Consensus 6 ~~~~h~~~v~~~~~---s~~~~~l~~~~~d~~v~iw~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 6 IEQAPKDYISDIKI---IPSKSLLLITSWDGSLTVYKFDIQAK----------NVDLLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCCSSCEEEEEE---EGGGTEEEEEETTSEEEEEEEETTTT----------EEEEEEEEECSSCEEEEEEEESSSEEE
T ss_pred cccCCCCcEEEEEE---cCCCCEEEEEcCCCeEEEEEeCCCCc----------cccceeeeecCCceEEEEECCCCCcEE
Confidence 34589999999999 99999999999999999999976531 112344568999999999999999 99
Q ss_pred EEEeCCCcEEEEeC-CCCeeeecccC--cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC---------CCCCCCccc
Q 010390 124 LTASGDQTIKIWDA-EKKKCTGALMG--HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC---------KSSPKSNCA 191 (512)
Q Consensus 124 ~s~~~dg~i~iwd~-~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~ 191 (512)
++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| + .+|++++.|+.|++||+++ .+...
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---- 145 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN---- 145 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSS----
T ss_pred EEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeee----
Confidence 99999999999999 77755 66778 999999999999 6 8999999999999999875 32221
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAK 270 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 270 (512)
.+ .+...+.+++|++++ +++ ++.|+.|++||+++ ....... ..
T Consensus 146 -----------------------~~-~~~~~v~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~---------~~ 189 (342)
T 1yfq_A 146 -----------------------NT-KVKNKIFTMDTNSSR--LIV-GMNNSQVQWFRLPLCEDDNGTI---------EE 189 (342)
T ss_dssp -----------------------SS-SSCCCEEEEEECSSE--EEE-EESTTEEEEEESSCCTTCCCEE---------EE
T ss_pred -----------------------EE-eeCCceEEEEecCCc--EEE-EeCCCeEEEEECCcccccccee---------ee
Confidence 12 267789999999887 554 56899999999998 5432211 23
Q ss_pred cccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccC--C--CCceEeeeecee-------ceeEEEEEECCCCCEEEEe
Q 010390 271 ETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQL--D--KGPIQHFSGCRI-------ESFYVKSEICPNASHILSG 338 (512)
Q Consensus 271 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~--~--~~~~~~~~~~~~-------~~~~~~~~~s~~~~~l~~g 338 (512)
..+...+.+++|+| ++.++++++.||.|++|++... . ......+..+.. ...+.+++|+|++++|++|
T Consensus 190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 269 (342)
T 1yfq_A 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA 269 (342)
T ss_dssp CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence 45567899999999 9999999999999999998764 1 245555665533 3368899999999999999
Q ss_pred cCCCCEEEEecCCCCCCCceeccc-cCCeEEEEeCCCCCCeEEEEeCCCc-EEEEeC
Q 010390 339 SSDGNAYVWQVNKPQADPIKLKSH-DGEVTAVNWCPNEAGKIVTSSDDYT-VRLWSL 393 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~~dg~-i~vwd~ 393 (512)
+.||.|++||+.+++. ...+.+| ...|++++ |++ .+|++++.||. .+.|..
T Consensus 270 ~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~~~--~~~-~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 270 GSDGIISCWNLQTRKK-IKNFAKFNEDSVVKIA--CSD-NILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ETTSCEEEEETTTTEE-EEECCCCSSSEEEEEE--ECS-SEEEEEEECTHHHHCSSS
T ss_pred cCCceEEEEcCccHhH-hhhhhcccCCCceEec--CCC-CeEEEEecCCcccccccc
Confidence 9999999999998776 4667788 99999999 888 89999999998 555553
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.8e-37 Score=295.85 Aligned_cols=300 Identities=15% Similarity=0.235 Sum_probs=234.1
Q ss_pred EecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 010390 60 KTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK 139 (512)
Q Consensus 60 ~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 139 (512)
.+++++++||+|+.||.|+|||+.++. ....+.+|.+.|++++|+|++++|++|+.|+.|++||+.+
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 170 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNL-------------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCE-------------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcc-------------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 359999999999999999999987653 3566789999999999999999999999999999999999
Q ss_pred CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc----eeeeccccccccccccccccee
Q 010390 140 KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES----FVFSSAVVKGAHLLSQSKRVSR 215 (512)
Q Consensus 140 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 215 (512)
++.+..+.+|...|.+++|+|++ .+|++++.||.|++||+++++......... .+....+... .....
T Consensus 171 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~ 242 (420)
T 3vl1_A 171 GSNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVG-------TDRQL 242 (420)
T ss_dssp CCCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEEC-------CCSSC
T ss_pred CcCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecC-------Cccee
Confidence 99999999999999999999988 899999999999999998765433221100 0000000000 00001
Q ss_pred cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEEEec
Q 010390 216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCM 294 (512)
Q Consensus 216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 294 (512)
...+...+.+++|+|++..+++ |+.||.|++||+++++..... ...|...|.+++|+|++. +|++++.
T Consensus 243 ~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 243 HEISTSKKNNLEFGTYGKYVIA-GHVSGVITVHNVFSKEQTIQL----------PSKFTCSCNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp GGGCCCCCCTTCSSCTTEEEEE-EETTSCEEEEETTTCCEEEEE----------CCTTSSCEEEEEECSSCTTEEEEEET
T ss_pred eecccCcccceEEcCCCCEEEE-EcCCCeEEEEECCCCceeEEc----------ccccCCCceeEEEeCCCCCEEEEEeC
Confidence 2234566777888899988877 558999999999988765542 345667899999999999 9999999
Q ss_pred CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC--------CceeccccCCe
Q 010390 295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD--------PIKLKSHDGEV 366 (512)
Q Consensus 295 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~--------~~~~~~h~~~v 366 (512)
||.|++||+++... ++..+..+. ...+..+. .+++++|++++.|+.|++|++...... ...+..|.+.|
T Consensus 312 dg~i~vwd~~~~~~-~~~~~~~~~-~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v 388 (420)
T 3vl1_A 312 NGMLAQWDLRSPEC-PVGEFLINE-GTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAV 388 (420)
T ss_dssp TSEEEEEETTCTTS-CSEEEEEST-TSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCC
T ss_pred CCeEEEEEcCCCcC-chhhhhccC-CCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcce
Confidence 99999999977533 344444432 23455564 467889999999999999999874221 23566788999
Q ss_pred EEEEeCCCCCC---eEEEEeCCCcEEEEeCCC
Q 010390 367 TAVNWCPNEAG---KIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 367 ~~v~~~~~~~~---~l~s~~~dg~i~vwd~~~ 395 (512)
.+++|+|++ . .+++++.+|.+.+|++++
T Consensus 389 ~~~~~s~~~-~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 389 SQFCYVSDD-ESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CEEEEECCS-SSSCEEEEEETTTEEEEEESCC
T ss_pred EEEEEccCC-CCcceEEEEcCCceEEEEeccC
Confidence 999999999 6 688888899999999875
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-38 Score=307.85 Aligned_cols=300 Identities=12% Similarity=0.076 Sum_probs=216.8
Q ss_pred ecCCccCCcceEEEEEecCC------CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390 45 EHHGEETPPLAVSFCKTSKN------SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK 118 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~------~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 118 (512)
.+.+|.+.|.+|+| +|+ +.+||+|+.||+|+|||+..+....... .....+...+.+|...|++++|++
T Consensus 202 ~l~~~~~~V~~v~w---sp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--~~~~~p~~~l~~h~~~v~sv~~s~ 276 (524)
T 2j04_B 202 TIVHSFGEVWDLKW---HEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--KMCEKPSLTLSLADSLITTFDFLS 276 (524)
T ss_dssp EEEECCCSEEEEEE---CSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--ECCCSCSEEECCTTTCEEEEEESS
T ss_pred EEEecCCcEEEEEE---CCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--eeecCceEEEEcCCCCEEEEEecC
Confidence 34567889999999 665 6799999999999999997653210000 000122456789999999999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe-eeecccCcCCCEEEE--EeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 119 EDTNILTASGDQTIKIWDAEKKK-CTGALMGHTGSIKSL--CSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l--~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
+ ..|++|+.||+|++||+++++ +...+.+|...|+++ .|+|++.++|++++.|++|++||+++++...
T Consensus 277 ~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~-------- 347 (524)
T 2j04_B 277 P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK-------- 347 (524)
T ss_dssp S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC--------
T ss_pred C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc--------
Confidence 6 489999999999999999774 445688999999999 4666544799999999999999998543221
Q ss_pred eecccccccccccccccceeccccc--ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAAS--MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
.+.+|. ..|.+++|+|++..+++ ++.|+.|++||++++.... .+.+|
T Consensus 348 -------------------~~~~~~~~~~v~~v~fsp~~~~l~s-~~~d~tv~lwd~~~~~~~~-----------~l~gH 396 (524)
T 2j04_B 348 -------------------TTVSRFRGSNLVPVVYCPQIYSYIY-SDGASSLRAVPSRAAFAVH-----------PLVSR 396 (524)
T ss_dssp -------------------EEEEECSCCSCCCEEEETTTTEEEE-ECSSSEEEEEETTCTTCCE-----------EEEEC
T ss_pred -------------------ccccccccCcccceEeCCCcCeEEE-eCCCCcEEEEECcccccce-----------eeecC
Confidence 112222 24789999999998776 4479999999999876544 35678
Q ss_pred ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec---eeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 274 LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC---RIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
...|++++|+|++++|++|+.||+|++||+... .+...... .....+..++|+|+++.+.. ..+ +.+|+..
T Consensus 397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~---~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~ 470 (524)
T 2j04_B 397 ETTITAIGVSRLHPMVLAGSADGSLIITNAARR---LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLT 470 (524)
T ss_dssp SSCEEEEECCSSCCBCEEEETTTEEECCBSCSS---TTTCC------CCCCEEEECBCCSSSCEEEE-CCC--CCCCC--
T ss_pred CCceEEEEeCCCCCeEEEEECCCEEEEEechHh---hccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ceecccc
Confidence 899999999999999999999999999997542 11111110 11124567899999985532 222 3344333
Q ss_pred -CCCCCCceeccccCCeEEEEeCCCCC--CeEEEEeCCCcEEEEeCCCC
Q 010390 351 -KPQADPIKLKSHDGEVTAVNWCPNEA--GKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 351 -~~~~~~~~~~~h~~~v~~v~~~~~~~--~~l~s~~~dg~i~vwd~~~~ 396 (512)
++. ....+.+|...|.+|+|+|+++ ..+++|+.||.|+||++...
T Consensus 471 ~~g~-~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 471 VNDV-SKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred cCCc-ceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 223 3467889999999999999962 48999999999999998754
No 61
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.2e-37 Score=282.68 Aligned_cols=258 Identities=19% Similarity=0.297 Sum_probs=215.4
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
.....+.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++ ++|++++.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEE
Confidence 4466788999999999999999999999999999999999999999999999999999999988 899999999999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
|+++++. ...+..|...|.++.|+|++..+++ |+.|+.|++||+++++...
T Consensus 93 d~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~- 143 (312)
T 4ery_A 93 DVSSGKC---------------------------LKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKCLK- 143 (312)
T ss_dssp ETTTCCE---------------------------EEEEECCSSCEEEEEECSSSSEEEE-EETTSCEEEEETTTCCEEE-
T ss_pred ECCCCcE---------------------------EEEEcCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCEEEE-
Confidence 9986542 2245577889999999999998887 5589999999999877654
Q ss_pred ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 338 (512)
....|...|.+++|+|++.+|++++.||.|++||++... .+..+.. .....+..++|+|++++|+++
T Consensus 144 ----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 144 ----------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID-DDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp ----------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECC-SSCCCEEEEEECTTSSEEEEE
T ss_pred ----------EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeeEEec-cCCCceEEEEECCCCCEEEEE
Confidence 355677889999999999999999999999999987632 2332222 123457779999999999999
Q ss_pred cCCCCEEEEecCCCCCCCceeccccCCeE--EEEeC-CCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 339 SSDGNAYVWQVNKPQADPIKLKSHDGEVT--AVNWC-PNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v~--~v~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
+.|+.|++||+.+++. ...+.+|...+. ...++ +++ .+|++|+.||.|++||+.+++++..
T Consensus 211 ~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 211 TLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp ETTTEEEEEETTTTEE-EEEECSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETTTCCEEEE
T ss_pred cCCCeEEEEECCCCcE-EEEEEecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECCCchhhhh
Confidence 9999999999988765 456777765432 23344 555 8999999999999999999886654
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-36 Score=294.94 Aligned_cols=284 Identities=23% Similarity=0.413 Sum_probs=234.5
Q ss_pred EeecCCccCCc-ceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390 43 TVEHHGEETPP-LAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 43 ~~~~~gh~~~v-~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
...+.||.+.| .++ +++|++|++|+.||.|++||+.++. .+..+.+|.+.|.+++|+ +.
T Consensus 111 ~~~l~~h~~~v~~~~-----~~~g~~l~sg~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~~~~~--~~ 170 (445)
T 2ovr_B 111 PKVLKGHDDHVITCL-----QFCGNRIVSGSDDNTLKVWSAVTGK-------------CLRTLVGHTGGVWSSQMR--DN 170 (445)
T ss_dssp CEEEECSTTSCEEEE-----EEETTEEEEEETTSCEEEEETTTCC-------------EEEECCCCSSCEEEEEEE--TT
T ss_pred eEEecccCCCcEEEE-----EEcCCEEEEEECCCcEEEEECCCCc-------------EEEEEcCCCCCEEEEEec--CC
Confidence 35678999876 444 3478999999999999999998764 367788999999999997 67
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
+|++|+.||+|++||+.+++.+..+.+|...|.++.|++ ..+++|+.||.|++||+++++..
T Consensus 171 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~--------------- 232 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL--------------- 232 (445)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE---------------
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE---------------
Confidence 999999999999999999999999999999999999963 68999999999999999865422
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
..+..|...+.++.+ ++..+++ |+.||.|++||+++++... ....|...|.++.
T Consensus 233 ------------~~~~~~~~~v~~~~~--~~~~l~~-~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~v~~~~ 286 (445)
T 2ovr_B 233 ------------HVLMGHVAAVRCVQY--DGRRVVS-GAYDFMVKVWDPETETCLH-----------TLQGHTNRVYSLQ 286 (445)
T ss_dssp ------------EEEECCSSCEEEEEE--CSSCEEE-EETTSCEEEEEGGGTEEEE-----------EECCCSSCEEEEE
T ss_pred ------------EEEcCCcccEEEEEE--CCCEEEE-EcCCCEEEEEECCCCcEeE-----------EecCCCCceEEEE
Confidence 244567889999998 6677776 5589999999999877655 3556778899999
Q ss_pred eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc
Q 010390 282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS 361 (512)
Q Consensus 282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~ 361 (512)
+ ++.++++++.||.|++||+.+. ..+..+.++. ..+.++.+ ++++|++|+.||.|++||+.+++. ...+.+
T Consensus 287 ~--~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~ 357 (445)
T 2ovr_B 287 F--DGIHVVSGSLDTSIRVWDVETG--NCIHTLTGHQ--SLTSGMEL--KDNILVSGNADSTVKIWDIKTGQC-LQTLQG 357 (445)
T ss_dssp E--CSSEEEEEETTSCEEEEETTTC--CEEEEECCCC--SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE-EEEECS
T ss_pred E--CCCEEEEEeCCCeEEEEECCCC--CEEEEEcCCc--ccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcE-EEEEcc
Confidence 9 7889999999999999999763 3445555443 33444554 578999999999999999988765 355554
Q ss_pred ---ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 362 ---HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 362 ---h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
|...|++++|++ .+|++|+.||.|++||+.+++.+..+
T Consensus 358 ~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 358 PNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp TTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeee
Confidence 888999999963 79999999999999999999877654
No 63
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6e-37 Score=283.59 Aligned_cols=253 Identities=19% Similarity=0.284 Sum_probs=208.2
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
+.....+.||...|.+++| +|+|++|++|+.||.|+|||+.+++ .+..+.+|...|.+++|+|+
T Consensus 55 ~~~~~~~~~h~~~v~~~~~---s~dg~~l~s~s~D~~v~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~ 118 (319)
T 3frx_A 55 GVPVRSFKGHSHIVQDCTL---TADGAYALSASWDKTLRLWDVATGE-------------TYQRFVGHKSDVMSVDIDKK 118 (319)
T ss_dssp EEEEEEEECCSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTTE-------------EEEEEECCSSCEEEEEECTT
T ss_pred cccceEEeCCcccEEEEEE---CCCCCEEEEEeCCCEEEEEECCCCC-------------eeEEEccCCCcEEEEEEcCC
Confidence 4456678899999999999 9999999999999999999998763 36778899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCC-----CCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN-----SDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
+.+|++|+.|++|++||+. ++++..+.+|...|.++.|.|.. ...|++++.|+.|++||+++.+.
T Consensus 119 ~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------- 188 (319)
T 3frx_A 119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--------- 188 (319)
T ss_dssp SCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---------
T ss_pred CCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---------
Confidence 9999999999999999986 56777888999999999999853 24899999999999999975431
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL 274 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
...+.+|...|.+++|+|++..++++ +.||.|++||+.+.+..... .+.
T Consensus 189 ------------------~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~i~iwd~~~~~~~~~~------------~~~ 237 (319)
T 3frx_A 189 ------------------EADFIGHNSNINTLTASPDGTLIASA-GKDGEIMLWNLAAKKAMYTL------------SAQ 237 (319)
T ss_dssp ------------------EEEECCCCSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTTEEEEEE------------ECC
T ss_pred ------------------heeecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEe------------cCC
Confidence 22455788999999999999998874 48999999999988765432 223
Q ss_pred cCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee------ceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390 275 HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG------CRIESFYVKSEICPNASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~ 348 (512)
..|.+++|+|++.+|++++. +.+++|++.... ....+.. ......+.+++|+|+|++|++|+.||.|++||
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQY--LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEEETTEE--EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCe--eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 57999999999999988865 569999985421 1222211 11234577899999999999999999999999
Q ss_pred cCCC
Q 010390 349 VNKP 352 (512)
Q Consensus 349 ~~~~ 352 (512)
+.+.
T Consensus 315 ~~t~ 318 (319)
T 3frx_A 315 VMTA 318 (319)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 8653
No 64
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-36 Score=283.63 Aligned_cols=296 Identities=17% Similarity=0.217 Sum_probs=223.1
Q ss_pred cceeccccCCCcEEEEEE-----ec-CCCEEEEEeCCCcEEEEeCCCC-------eeeecccCcCCCEEEEEeeCCCCCe
Q 010390 99 ARISDWVAHQNAIFDLCW-----IK-EDTNILTASGDQTIKIWDAEKK-------KCTGALMGHTGSIKSLCSHPTNSDI 165 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~-----s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~ 165 (512)
.....+.+|.+.|++++| ++ ++++|++|+.|++|+|||+.+. .+...+.+|...|.+++|+|++ .+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~ 90 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CF 90 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CE
Confidence 346678999999999999 76 8999999999999999998753 4566788999999999999988 89
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeE
Q 010390 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV 245 (512)
Q Consensus 166 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i 245 (512)
+++++.|++|++||+++++. ...+.+|...|.+++|+|++..+++++ .|+.|
T Consensus 91 l~s~s~D~~v~lwd~~~~~~---------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~~-~d~~i 142 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTT---------------------------YKRFVGHQSEVYSVAFSPDNRQILSAG-AEREI 142 (343)
T ss_dssp EEEEETTSEEEEEETTSSCE---------------------------EEEEECCCSCEEEEEECSSTTEEEEEE-TTSCE
T ss_pred EEEEcCCCcEEEEECCCCcE---------------------------EEEEcCCCCcEEEEEECCCCCEEEEEc-CCCEE
Confidence 99999999999999986542 224567889999999999999988754 89999
Q ss_pred EEEeccCccceecccCCCccccccccccccCeeEEEeCCCC----------CEEEEEecCCeEEEEEcccCCCCceEeee
Q 010390 246 KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG----------VFLTASCMDHRIYLYNVLQLDKGPIQHFS 315 (512)
Q Consensus 246 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 315 (512)
++||+......... ....|...|.+++|+|++ .+|++++.||.|++||.. ......+.
T Consensus 143 ~~wd~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~ 210 (343)
T 2xzm_R 143 KLWNILGECKFSSA---------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN---FQIRYTFK 210 (343)
T ss_dssp EEEESSSCEEEECC---------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT---TEEEEEEE
T ss_pred EEEeccCCceeeee---------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC---CceeEEEc
Confidence 99999743322111 234677789999999987 799999999999999942 23344444
Q ss_pred eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 316 GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 316 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
+| ...+.+++|+|++++|++|+.||.|++||+.........+ .+...|.+++|+|++ .+++ ++.|+.|++||+.+
T Consensus 211 ~h--~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~~la-~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 211 AH--ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKL-QWVA-VGTDQGVKIFNLMT 285 (343)
T ss_dssp CC--SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSS-CEEE-EEESSCEEEEESSS
T ss_pred Cc--cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCC-CEEE-EECCCCEEEEEeCC
Confidence 44 3568899999999999999999999999996554433333 355679999999998 6665 55688899999988
Q ss_pred CcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390 396 SRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD 452 (512)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 452 (512)
++......... .+.... .....+...+. .++|+|++++++.++..
T Consensus 286 ~~~~~~~~~~~----------~~~~~~-~~~~~~~~~v~-~~~~sp~g~~l~sg~~D 330 (343)
T 2xzm_R 286 QSKAPVCTIEA----------EPITKA-EGQKGKNPQCT-SLAWNALGKKLFAGFTD 330 (343)
T ss_dssp CCSCSEEECCC----------CSGGGB-TTBCCSCCCEE-EEEECSSSCCEEEEETT
T ss_pred CCCCceEEeec----------Ccchhh-hhhcCCCCceE-EEEECCCCCeEEEecCC
Confidence 77554211100 000000 00011111223 67899999988877443
No 65
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=288.07 Aligned_cols=298 Identities=13% Similarity=0.171 Sum_probs=232.7
Q ss_pred eeEeecCCccCCcceEEEEEecCC---CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKN---SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI 117 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~---~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 117 (512)
..+..+.+|.+.|.+|+| +|+ |++||+|+.||.|+|||+.+... .....+.+|.+.|++++|+
T Consensus 30 ~~~~~~~~h~~~v~~~~~---~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~h~~~v~~~~~~ 95 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSF---SPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TIPKAQQMHTGPVLDVCWS 95 (368)
T ss_dssp CCEECSSCCSSCEEEEEE---CCTTSSSEEEEEEETTSEEEEEEECTTSC-----------EEEEEEEECSSCEEEEEEC
T ss_pred ceeEeccCCCCceEEEEE---cCCCCCceEEEEECCCCcEEEEEcCCCCc-----------eeEEEeccccCCEEEEEEC
Confidence 445678899999999999 898 69999999999999999976321 2236678899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEe--eCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 118 KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCS--HPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 118 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
|++++|++++.||.|++||+.+++.+. +..|...|.+++| ++++ .+|++++.||.|++||+++++.....
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~------ 167 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVL------ 167 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEE------
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEE------
Confidence 999999999999999999999998776 5569999999999 7776 89999999999999999876543321
Q ss_pred eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
. ....+.++.+.+ ..+++ ++.++.+.+|+++......... ......
T Consensus 168 ---------------------~-~~~~~~~~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~ 213 (368)
T 3mmy_A 168 ---------------------Q-LPERCYCADVIY--PMAVV-ATAERGLIVYQLENQPSEFRRI---------ESPLKH 213 (368)
T ss_dssp ---------------------E-CSSCEEEEEEET--TEEEE-EEGGGCEEEEECSSSCEEEEEC---------CCSCSS
T ss_pred ---------------------e-cCCCceEEEecC--CeeEE-EeCCCcEEEEEeccccchhhhc---------cccccC
Confidence 1 122455555553 45555 4479999999998765543321 122233
Q ss_pred CeeEEEeCCCCCE----EEEEecCCeEEEEEcccCCC-CceEeeeeceec----------eeEEEEEECCCCCEEEEecC
Q 010390 276 GISSLSQDSNGVF----LTASCMDHRIYLYNVLQLDK-GPIQHFSGCRIE----------SFYVKSEICPNASHILSGSS 340 (512)
Q Consensus 276 ~i~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~----------~~~~~~~~s~~~~~l~~g~~ 340 (512)
.+.++.+.++... +++++.||.|++||+..... .....+..+... ..+.+++|+|++++|++|+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 293 (368)
T 3mmy_A 214 QHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS 293 (368)
T ss_dssp CEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET
T ss_pred CCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc
Confidence 4555555544433 99999999999999976533 344455554321 15889999999999999999
Q ss_pred CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 341 dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
||.|++||+.+++. ...+.+|...|++++|+|++ .+|++++.|+..+.|++.+.
T Consensus 294 dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g-~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 294 DGRFSFWDKDARTK-LKTSEQLDQPISACCFNHNG-NIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp TSCEEEEETTTTEE-EEECCCCSSCEEEEEECTTS-SCEEEEECCCSTTCGGGCCT
T ss_pred CCeEEEEECCCCcE-EEEecCCCCCceEEEECCCC-CeEEEEecccccccccccCC
Confidence 99999999998766 46778999999999999999 89999999986666665443
No 66
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.2e-37 Score=286.13 Aligned_cols=259 Identities=15% Similarity=0.258 Sum_probs=199.6
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CC
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--ED 120 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~ 120 (512)
...+.||.++|.+|+| +|+|++||+|+.|+.|+|||+.++.. ..+..+.+|.+.|++++|++ ++
T Consensus 6 ~~~~~~H~~~V~~v~~---s~~g~~lasgs~D~~v~lwd~~~~~~-----------~~~~~l~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQM---DYYGTRLATCSSDRSVKIFDVRNGGQ-----------ILIADLRGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp --------CCEEEEEE---CGGGCEEEEEETTTEEEEEEEETTEE-----------EEEEEEECCSSCEEEEEECCGGGS
T ss_pred eeecccccCeEEEeeE---cCCCCEEEEEeCCCeEEEEEecCCCc-----------EEEEEEcCCCccEEEEEeCCCCCC
Confidence 3456799999999999 99999999999999999999875421 23567889999999999986 48
Q ss_pred CEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 121 TNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
++|++|+.|++|+|||+++++ ....+.+|...|++++|+|++ +.+|++|+.|+.|++||++.....
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~----------- 140 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW----------- 140 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-----------
T ss_pred CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-----------
Confidence 999999999999999998873 566788899999999999973 379999999999999998754210
Q ss_pred cccccccccccccccceecccccccEEEEEEeecC-----------------CEEEEEeecCCeEEEEeccCccceeccc
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE-----------------VSIATASAVNSIVKFWDTRNLKAQITQA 260 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l~~~g~~dg~i~iwd~~~~~~~~~~~ 260 (512)
........|...+.+++|+|+. ..++ +|+.|+.|++||++........
T Consensus 141 -------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~- 205 (316)
T 3bg1_A 141 -------------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEE- 205 (316)
T ss_dssp -------------EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEE-
T ss_pred -------------ceeeeeccccCCcceEEEccccCCccccccccccCccccceEE-EecCCCeEEEEEeCCCCcccee-
Confidence 0011334677788899998873 4455 4678999999999754211100
Q ss_pred CCCccccccccccccCeeEEEeCCCC----CEEEEEecCCeEEEEEcccCCCC--ceEeeeeceeceeEEEEEECCCCCE
Q 010390 261 WPHAESSSAKETRLHGISSLSQDSNG----VFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRIESFYVKSEICPNASH 334 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~ 334 (512)
..+..|...|.+++|+|++ .+|++++.|++|++||+...... ....+..+ ...+.+++|+|++++
T Consensus 206 -------~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 206 -------QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANI 276 (316)
T ss_dssp -------ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCC
T ss_pred -------eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCE
Confidence 0466788899999999986 89999999999999998753211 11223333 456889999999999
Q ss_pred EEEecCCCCEEEEecC
Q 010390 335 ILSGSSDGNAYVWQVN 350 (512)
Q Consensus 335 l~~g~~dg~i~iw~~~ 350 (512)
|++++.|+.|++|+..
T Consensus 277 las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 277 LAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEESSSCEEEEEEC
T ss_pred EEEEcCCCeEEEEEEC
Confidence 9999999999999975
No 67
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=282.41 Aligned_cols=264 Identities=17% Similarity=0.241 Sum_probs=202.0
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC--eeeecc-cC-cCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGAL-MG-HTGSIKSLCSHPTNSDILVSGSRDGS 174 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~-h~~~v~~l~~~~~~~~~l~s~~~dg~ 174 (512)
..+..+.+|.+.|++++|+|+ +|++|+.|++|++||+.++ +....+ .+ |...|.+++|+|++ .+|++++.|++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~ 81 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDST 81 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSC
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCc
Confidence 346778899999999999987 9999999999999999875 445555 34 99999999999988 89999999999
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
|++||+........ .......+.+|...|.+++|+|++..+++ |+.|+.|++||++...
T Consensus 82 v~iw~~~~~~~~~~--------------------~~~~~~~~~~h~~~V~~v~~sp~g~~las-~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 82 VSIWAKEESADRTF--------------------EMDLLAIIEGHENEVKGVAWSNDGYYLAT-CSRDKSVWIWETDESG 140 (330)
T ss_dssp EEEEEC-------C--------------------CCEEEEEEC----CEEEEEECTTSCEEEE-EETTSCEEEEECCTTC
T ss_pred EEEEEcccCcCccc--------------------cceeEEEEcCCCCcEEEEEECCCCCEEEE-EeCCCEEEEEeccCCC
Confidence 99999864321000 01123356688999999999999998887 4589999999995432
Q ss_pred ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC--C
Q 010390 255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN--A 332 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~ 332 (512)
..... ...+..|...|.+++|+|++.+|++++.|+.|++||........+..+.+|. ..+.+++|+|+ +
T Consensus 141 ~~~~~-------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~ 211 (330)
T 2hes_X 141 EEYEC-------ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE--GTVWSSDFDKTEGV 211 (330)
T ss_dssp CCCEE-------EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCSSSS
T ss_pred CCeEE-------EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC--CcEEEEEecCCCCe
Confidence 11000 0035678889999999999999999999999999998654334455555553 56888999998 7
Q ss_pred CEEEEecCCCCEEEEecCCCCC-------CCceecc-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 333 SHILSGSSDGNAYVWQVNKPQA-------DPIKLKS-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 333 ~~l~~g~~dg~i~iw~~~~~~~-------~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
.+|++|+.|++|++||+..... ....+.+ |...|++++|++++ +|++++.||.|++||..+++
T Consensus 212 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE
T ss_pred eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc
Confidence 7899999999999999875421 1122333 89999999999754 89999999999999987664
No 68
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.9e-36 Score=293.17 Aligned_cols=284 Identities=19% Similarity=0.333 Sum_probs=229.1
Q ss_pred cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390 46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT 125 (512)
Q Consensus 46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s 125 (512)
..+|...|.++++ ++++|++|+.||.|++||+.+++. +..+.+|.+.|.+++| ++++|++
T Consensus 129 ~~~~~~~v~~~~~-----d~~~l~~g~~dg~i~iwd~~~~~~-------------~~~~~~h~~~v~~l~~--~~~~l~s 188 (435)
T 1p22_A 129 RSETSKGVYCLQY-----DDQKIVSGLRDNTIKIWDKNTLEC-------------KRILTGHTGSVLCLQY--DERVIIT 188 (435)
T ss_dssp CCSSCCCEEEEEC-----CSSEEEEEESSSCEEEEESSSCCE-------------EEEECCCSSCEEEEEC--CSSEEEE
T ss_pred ccCCCCcEEEEEE-----CCCEEEEEeCCCeEEEEeCCCCeE-------------EEEEcCCCCcEEEEEE--CCCEEEE
Confidence 3456677777765 899999999999999999977643 6778899999999999 7889999
Q ss_pred EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 126 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
|+.||+|++||+.+++.+..+.+|...|.+++|++ ..+++|+.||.|++||++++....
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~------------------ 247 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDIT------------------ 247 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCE------------------
T ss_pred EcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCce------------------
Confidence 99999999999999999999999999999999974 689999999999999998765321
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (512)
......+|...|.++.| ++..+++ |+.||.|++||+++++... ....|...|.++.+ +
T Consensus 248 ------~~~~~~~~~~~v~~~~~--~~~~l~s-~~~dg~i~vwd~~~~~~~~-----------~~~~~~~~v~~~~~--~ 305 (435)
T 1p22_A 248 ------LRRVLVGHRAAVNVVDF--DDKYIVS-ASGDRTIKVWNTSTCEFVR-----------TLNGHKRGIACLQY--R 305 (435)
T ss_dssp ------EEEEECCCSSCEEEEEE--ETTEEEE-EETTSEEEEEETTTCCEEE-----------EEECCSSCEEEEEE--E
T ss_pred ------eeeEecCCCCcEEEEEe--CCCEEEE-EeCCCeEEEEECCcCcEEE-----------EEcCCCCcEEEEEe--C
Confidence 11244577889999999 6677776 5589999999999887665 35667788999999 4
Q ss_pred CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC--------CCc
Q 010390 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA--------DPI 357 (512)
Q Consensus 286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~--------~~~ 357 (512)
+.++++|+.||.|++||+++. ..+..+.++. ..+.+++| ++++|++|+.||.|++||+.+... ...
T Consensus 306 ~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~--~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 379 (435)
T 1p22_A 306 DRLVVSGSSDNTIRLWDIECG--ACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 379 (435)
T ss_dssp TTEEEEEETTSCEEEEETTTC--CEEEEECCCS--SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred CCEEEEEeCCCeEEEEECCCC--CEEEEEeCCc--CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchhee
Confidence 679999999999999999763 3455555543 45777777 789999999999999999976541 245
Q ss_pred eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.+.+|.+.|++++| ++ .+|++++.||.|++||+.+......
T Consensus 380 ~~~~h~~~v~~l~~--~~-~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 380 TLVEHSGRVFRLQF--DE-FQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp EECCCSSCCCCEEE--CS-SCEEECCSSSEEEEEC---------
T ss_pred eccCCCCCeEEEEe--CC-CEEEEEeCCCEEEEEECCCCCCccc
Confidence 67899999999999 55 7899999999999999998775554
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.8e-36 Score=305.89 Aligned_cols=330 Identities=15% Similarity=0.158 Sum_probs=238.7
Q ss_pred eeEeecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC---cEEEEEE
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN---AIFDLCW 116 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~ 116 (512)
.....+.+|.+.|.+++| +|+++ +|++|+.||.|++||..+. ..+..+.+|.. .|++++|
T Consensus 151 ~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~d~~v~vwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~ 214 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHL---KQSRPMRSMTVGDDGSVVFYQGPPF-------------KFSASDRTHHKQGSFVRDVEF 214 (615)
T ss_dssp CEEEECCSCSSCEEEEEE---CSSSSCEEEEEETTTEEEEEETTTB-------------EEEEEECSSSCTTCCEEEEEE
T ss_pred CcceeeecCCccEEEEEE---CCCCCcEEEEEeCCCcEEEEeCCCc-------------ceeeeecccCCCCceEEEEEE
Confidence 345667889999999999 99998 8999999999999998665 33677888999 9999999
Q ss_pred ecC-CCEEEEEeCCCcEEEEeCCCCeeeecc-c---CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 117 IKE-DTNILTASGDQTIKIWDAEKKKCTGAL-M---GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 117 s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
+|+ +++|++++.||.|++||+.+++.+..+ . .|...|.+++|+ ++ .+|++++.|+.|++||+++++.......
T Consensus 215 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999 999999999999999999999999888 6 899999999999 66 8999999999999999987654433221
Q ss_pred c-----ceeeeccccccccc-------------ccccccceec---------------------------------cccc
Q 010390 192 E-----SFVFSSAVVKGAHL-------------LSQSKRVSRR---------------------------------KAAS 220 (512)
Q Consensus 192 ~-----~~~~~~~~~~~~~~-------------~~~~~~~~~~---------------------------------~~~~ 220 (512)
. .......+..+..+ .........+ ..|.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 293 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCC
T ss_pred CCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCccc
Confidence 1 00000000000000 0000111111 2344
Q ss_pred ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc----------------------------------eeccc------
Q 010390 221 MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA----------------------------------QITQA------ 260 (512)
Q Consensus 221 ~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~----------------------------------~~~~~------ 260 (512)
..|.+++| +++..+++ ++.|+.|++||+.+.+. .....
T Consensus 373 ~~v~~~~~-~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 373 NLIVSLDN-SKAQEYSS-ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp SCEEEEEC-CSTTCCEE-EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred CceEEEEE-CCCcEEEE-EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 44455555 33444443 23455555555543210 00000
Q ss_pred -------------C-CC---------cccc-ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee
Q 010390 261 -------------W-PH---------AESS-SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG 316 (512)
Q Consensus 261 -------------~-~~---------~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 316 (512)
. .. .... .....|...|.+++|+|++++|++++.||.|++||+.+. ..+..+.+
T Consensus 451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~ 528 (615)
T 1pgu_A 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR--EVKTSRWA 528 (615)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEECCSC
T ss_pred EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC--cceeEeec
Confidence 0 00 0000 135567788999999999999999999999999999653 23333333
Q ss_pred ceeceeEEEEEECC----------CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390 317 CRIESFYVKSEICP----------NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY 386 (512)
Q Consensus 317 ~~~~~~~~~~~~s~----------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 386 (512)
. +...+.+++|+| ++++|++|+.||.|++||+.+.......+.+|...|++++|+|++ . |++++.||
T Consensus 529 ~-h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~-l~s~~~d~ 605 (615)
T 1pgu_A 529 F-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-T-LVSSGADA 605 (615)
T ss_dssp C-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-E-EEEEETTS
T ss_pred C-CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC-C-eEEecCCc
Confidence 0 345688999999 999999999999999999998755567788999999999999999 6 99999999
Q ss_pred cEEEEeCCC
Q 010390 387 TVRLWSLEN 395 (512)
Q Consensus 387 ~i~vwd~~~ 395 (512)
.|++|+++.
T Consensus 606 ~v~iw~~~~ 614 (615)
T 1pgu_A 606 CIKRWNVVL 614 (615)
T ss_dssp CEEEEEEC-
T ss_pred eEEEEeeec
Confidence 999999875
No 70
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-37 Score=318.57 Aligned_cols=227 Identities=13% Similarity=0.222 Sum_probs=175.1
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
.....||.+.|.+|+| +|++++||+|+.||.|+|||..+.+. ... ..|...|.+++|+| +++
T Consensus 10 ~~~~~gh~~~V~~laf---spdg~~lAsgs~Dg~I~lw~~~~~~~-------------~~~-~~~~~~V~~l~fsp-g~~ 71 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAF---DFTQNLLAIATVTGEVHIYGQQQVEV-------------VIK-LEDRSAIKEMRFVK-GIY 71 (902)
T ss_dssp EEEEEECSSCEEEEEE---ETTTTEEEEEETTSEEEEECSTTCEE-------------EEE-CSSCCCEEEEEEET-TTE
T ss_pred cccccCCCCCcEEEEE---CCCCCEEEEEeCCCEEEEEeCCCcEE-------------EEE-cCCCCCEEEEEEcC-CCE
Confidence 3445689999999999 99999999999999999999865421 222 34788999999999 889
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
|++++.|++|+|||+.+++++..+. |...|++++|+|++ ++|++|+.||.|++||++++.... +.. .
T Consensus 72 L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~------~~i-----~ 138 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSS------FKL-----D 138 (902)
T ss_dssp EEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEE------EEE-----C
T ss_pred EEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcccc------cee-----c
Confidence 9999999999999999999888886 67899999999988 999999999999999998654210 000 0
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc--c-----ccccccccc
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE--S-----SSAKETRLH 275 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~-----~~~~~~~~~ 275 (512)
..........+|...|.+++|+|++..++++|+.||.| +||+++.+........... . ......|..
T Consensus 139 -----~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 139 -----NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp -----CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred -----cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 00000012357888999999999765555567789999 9999988765443211000 0 001234557
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQL 306 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 306 (512)
.|.+++|+|+|.+|++++.||.|++||+++.
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 7999999999999999999999999998653
No 71
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.5e-37 Score=284.76 Aligned_cols=255 Identities=19% Similarity=0.257 Sum_probs=200.8
Q ss_pred ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCC-CCCeEEEEeCCCcEEEEe
Q 010390 103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPT-NSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd 179 (512)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++ .+..+.+|.+.|++++|++. ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998774 46778999999999999863 238999999999999999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCcccee
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
++++... ....+.+|...|.+++|+|+ +..+++ |+.|+.|++||++......
T Consensus 88 ~~~~~~~-------------------------~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 88 EENGTWE-------------------------KSHEHAGHDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp CSSSCCC-------------------------EEEEECCCSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEE
T ss_pred CCCCcce-------------------------EEEEccCCCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCcc
Confidence 9864321 11234578889999999998 556665 6689999999998753211
Q ss_pred cccCCCccccccccccccCeeEEEeCCC-----------------CCEEEEEecCCeEEEEEcccCCC-CceEeeeecee
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSN-----------------GVFLTASCMDHRIYLYNVLQLDK-GPIQHFSGCRI 319 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~ 319 (512)
.. .....|...+.+++|+|+ +.+|++++.|+.|++||+..... .....+.+|
T Consensus 142 ~~--------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h-- 211 (316)
T 3bg1_A 142 VK--------KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH-- 211 (316)
T ss_dssp EC--------CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--
T ss_pred ee--------eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--
Confidence 00 035567788999999987 47899999999999999854221 234444444
Q ss_pred ceeEEEEEECCCC----CEEEEecCCCCEEEEecCCCC---CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 320 ESFYVKSEICPNA----SHILSGSSDGNAYVWQVNKPQ---ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 320 ~~~~~~~~~s~~~----~~l~~g~~dg~i~iw~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
...+.+++|+|++ ++|++|+.|++|++|++.+.. .....+..|...|.+++|+|++ .+|++++.||.|++|+
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWK 290 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEE
Confidence 3568899999986 889999999999999997632 2234567789999999999999 8999999999999999
Q ss_pred CC
Q 010390 393 LE 394 (512)
Q Consensus 393 ~~ 394 (512)
..
T Consensus 291 ~~ 292 (316)
T 3bg1_A 291 ES 292 (316)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=296.42 Aligned_cols=314 Identities=15% Similarity=0.251 Sum_probs=226.8
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC------------CcEEEEE
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ------------NAIFDLC 115 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V~~l~ 115 (512)
.|.+.|.+|+| +|+|++||+|+.||.|+|||+.+...... ....+......+.+|. +.|++++
T Consensus 26 ~~~~~V~~v~~---s~~g~~la~g~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEF---NHSGELLATGDKGGRVVIFQQEQENKIQS--HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEE---CSSSSEEEEEETTSEEEEEEECC-----C--CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEE---CCCCCEEEEEcCCCeEEEEEecCCCCCCc--ccccceeEecccccccccccccccccccCceEEEE
Confidence 36788999999 99999999999999999999986542100 0011223466788998 8899999
Q ss_pred EecCC--CEEEEEeCCCcEEEEeCCCCeee---------------------------------------ec-ccCcCCCE
Q 010390 116 WIKED--TNILTASGDQTIKIWDAEKKKCT---------------------------------------GA-LMGHTGSI 153 (512)
Q Consensus 116 ~s~~~--~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v 153 (512)
|+|++ .+|++++.|++|++||+.+++.. .. ..+|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99998 79999999999999998765432 12 36799999
Q ss_pred EEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecC-
Q 010390 154 KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE- 232 (512)
Q Consensus 154 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 232 (512)
++++|+|++ .+|++| .|+.|++||++........ .......+..|...|.+++|+|++
T Consensus 181 ~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~~~~~p~~~ 239 (447)
T 3dw8_B 181 NSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNI-------------------VDIKPANMEELTEVITAAEFHPNSC 239 (447)
T ss_dssp CEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEE-------------------EECCCSSGGGCCCCEEEEEECSSCT
T ss_pred EEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeee-------------------eecccccccccCcceEEEEECCCCC
Confidence 999999987 899998 7999999999732210000 000011355788899999999998
Q ss_pred CEEEEEeecCCeEEEEeccCccc----eecccCCC-ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC
Q 010390 233 VSIATASAVNSIVKFWDTRNLKA----QITQAWPH-AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD 307 (512)
Q Consensus 233 ~~l~~~g~~dg~i~iwd~~~~~~----~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 307 (512)
..+++ |+.||.|++||+++++. ........ .........|...|.+++|+|++++|++++. +.|++||++..
T Consensus 240 ~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~- 316 (447)
T 3dw8_B 240 NTFVY-SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME- 316 (447)
T ss_dssp TEEEE-EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC-
T ss_pred cEEEE-EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC-
Confidence 66665 66899999999998775 22111000 0000112233348999999999999999998 99999999752
Q ss_pred CCceEeeeeceece-------------eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec--------------
Q 010390 308 KGPIQHFSGCRIES-------------FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK-------------- 360 (512)
Q Consensus 308 ~~~~~~~~~~~~~~-------------~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-------------- 360 (512)
...+..+..+.... .+..++|+|++++|++|+.||.|++||+.+++.. .+.
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~ 394 (447)
T 3dw8_B 317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI--TLEASRENNKPRTVLKP 394 (447)
T ss_dssp SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE--EEECCSTTCCTTCBCCC
T ss_pred ccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce--eeeecccccccccccCC
Confidence 23444454443111 0234899999999999999999999999876542 221
Q ss_pred -------------------cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 361 -------------------SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 361 -------------------~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
.+...|..++|+|++ .+|++++.++ +++|.-.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 395 RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKE-NIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSS-SEEEEECSSC-EEEEECC
T ss_pred ccccccCCcccccccccccccCCceeEEEECCCC-CEEEEEecce-eeeeccc
Confidence 234578999999999 8999988876 7787643
No 73
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-36 Score=287.53 Aligned_cols=252 Identities=17% Similarity=0.326 Sum_probs=204.9
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCC------------------CEEEEEeeCCCCCeE
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTG------------------SIKSLCSHPTNSDIL 166 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~------------------~v~~l~~~~~~~~~l 166 (512)
.+|.+.|++++|+|+|++|++|+ ++.++||++.+++.+..+..|.. .|.+++|+|++ .+|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFL 138 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC-CEE
Confidence 36999999999999999999976 68899999999988877765432 49999999988 899
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEE
Q 010390 167 VSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVK 246 (512)
Q Consensus 167 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~ 246 (512)
++|+.|+.|++||+.+++. ...+.+|...|.+++|+|++..+++ ++.|+.|+
T Consensus 139 ~s~~~d~~i~iwd~~~~~~---------------------------~~~~~~h~~~v~~~~~~p~~~~l~s-~s~d~~v~ 190 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKI---------------------------VMILQGHEQDIYSLDYFPSGDKLVS-GSGDRTVR 190 (393)
T ss_dssp EEEETTSCEEEEETTTTEE---------------------------EEEECCCSSCEEEEEECTTSSEEEE-EETTSEEE
T ss_pred EEEcCCCeEEEEECCCCcE---------------------------EEEEccCCCCEEEEEEcCCCCEEEE-ecCCCcEE
Confidence 9999999999999975432 2245678899999999999999887 55899999
Q ss_pred EEeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeee-----ceec
Q 010390 247 FWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-----CRIE 320 (512)
Q Consensus 247 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~ 320 (512)
+||+++++.... ..+...+.+++++| ++.+|++++.|+.|++||+.... .+..+.. ..+.
T Consensus 191 iwd~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~ 256 (393)
T 1erj_A 191 IWDLRTGQCSLT------------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHK 256 (393)
T ss_dssp EEETTTTEEEEE------------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCS
T ss_pred EEECCCCeeEEE------------EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCC
Confidence 999998776542 22345699999999 89999999999999999987633 2222211 1234
Q ss_pred eeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC-----------CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390 321 SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA-----------DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVR 389 (512)
Q Consensus 321 ~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~-----------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 389 (512)
..+.+++|+|++++|++|+.|+.|++||+.+... ....+.+|...|.+++|+|++ .+|++|+.|+.|+
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~ 335 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVL 335 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEE
Confidence 5688999999999999999999999999976432 123567899999999999999 8999999999999
Q ss_pred EEeCCCCccccc
Q 010390 390 LWSLENSRCSSM 401 (512)
Q Consensus 390 vwd~~~~~~~~~ 401 (512)
+||+.+++.+..
T Consensus 336 iwd~~~~~~~~~ 347 (393)
T 1erj_A 336 FWDKKSGNPLLM 347 (393)
T ss_dssp EEETTTCCEEEE
T ss_pred EEECCCCeEEEE
Confidence 999999887654
No 74
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=315.03 Aligned_cols=358 Identities=11% Similarity=0.043 Sum_probs=245.4
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccce-eccccCCCcEEEEEEecC-CCEEEEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARI-SDWVAHQNAIFDLCWIKE-DTNILTA 126 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~s~~-~~~l~s~ 126 (512)
|.+.|.+++| +|++++||+|+.||.|++||+++..... .. ....... ..+.+|.+.|++++|+|+ +..|++|
T Consensus 97 ~~~~V~~v~~---sp~g~~l~sgs~dg~V~lwd~~~~~~~~--~~-i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 97 VPGKITSIDT---DASLDWMLIGLQNGSMIVYDIDRDQLSS--FK-LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp CSSCEEEEEC---CTTCSEEEEEETTSCEEEEETTTTEEEE--EE-ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEE---CCCCCEEEEEcCCCcEEEEECCCCcccc--ce-eccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 6678888888 9999999999999999999998764210 00 0000000 345789999999999995 5789999
Q ss_pred eCCCcEEEEeCCCCeeeecccCc------------------CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390 127 SGDQTIKIWDAEKKKCTGALMGH------------------TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS 188 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 188 (512)
+.||.| +||+.+++++..+..| ...|++++|+|++ .+|++++.||.|++||+++++....
T Consensus 171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEE
T ss_pred eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEE
Confidence 999999 9999999888777655 5789999999998 8999999999999999988764321
Q ss_pred --c-----c------------ccceeeeccccc----c-ccccccc--------ccce----------------------
Q 010390 189 --N-----C------------AESFVFSSAVVK----G-AHLLSQS--------KRVS---------------------- 214 (512)
Q Consensus 189 --~-----~------------~~~~~~~~~~~~----~-~~~~~~~--------~~~~---------------------- 214 (512)
. . ....+....+.. . ....... ..+.
T Consensus 249 r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~ 328 (902)
T 2oaj_A 249 RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYY 328 (902)
T ss_dssp ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHH
T ss_pred EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhh
Confidence 0 0 011222222211 0 0100000 0000
Q ss_pred -------ecc-cccccEEEEEEee----------cCCEEEEEeecCCeEEEEeccCccceeccc------CCC-------
Q 010390 215 -------RRK-AASMSITSVLYLK----------DEVSIATASAVNSIVKFWDTRNLKAQITQA------WPH------- 263 (512)
Q Consensus 215 -------~~~-~~~~~v~~~~~~~----------~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~------~~~------- 263 (512)
.+. .+...+.++.+.+ +...+++ ++.|+.|++||+.++....... ..+
T Consensus 329 ~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~-~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~ 407 (902)
T 2oaj_A 329 ANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL-ILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS 407 (902)
T ss_dssp HSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE-EETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred cCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE-EcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence 010 2356677777755 2224555 4579999999987653221100 000
Q ss_pred -----------------ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-------cee
Q 010390 264 -----------------AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-------CRI 319 (512)
Q Consensus 264 -----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~ 319 (512)
......+.+|...+.+++|+|++++|++|+.|++|++||+..........+.. ..+
T Consensus 408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 00011234556667788899999999999999999999997653221111110 023
Q ss_pred ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC--------------------------------------------C
Q 010390 320 ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA--------------------------------------------D 355 (512)
Q Consensus 320 ~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~--------------------------------------------~ 355 (512)
...+.+++|+|++++||+|+.||+|+||++.+++. +
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 567 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP 567 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence 45688999999999999999999999999986521 1
Q ss_pred CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc---ccC-ccccceeeeeccc
Q 010390 356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM---RSP-SSVRRRVMAIPST 417 (512)
Q Consensus 356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~-~~~~~~~~~~~~~ 417 (512)
...+.+|.+.|++|+|+|+| +||+|+.|++|++||++++..+.. ... ..+..+|+++.++
T Consensus 568 ~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 568 STAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV 631 (902)
T ss_dssp EEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred eEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence 34677899999999999998 999999999999999988765431 111 1344556666666
No 75
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.6e-36 Score=286.99 Aligned_cols=289 Identities=17% Similarity=0.257 Sum_probs=227.9
Q ss_pred EEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEe
Q 010390 59 CKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWD 136 (512)
Q Consensus 59 ~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd 136 (512)
++++|+.. ++++|+.||.|+||++..... ....+..+.+|.+.|++++|+| ++.+|++|+.||.|+|||
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~---------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGR---------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEE---------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCC---------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 33388775 444578999999999865321 0123556789999999999999 999999999999999999
Q ss_pred CCCC-------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390 137 AEKK-------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ 209 (512)
Q Consensus 137 ~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
+.++ +++..+.+|...|.+++|+|++.++|++++.||.|++||+++++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~----------------------- 167 (402)
T 2aq5_A 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV----------------------- 167 (402)
T ss_dssp CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE-----------------------
T ss_pred ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc-----------------------
Confidence 9988 5677888999999999999997679999999999999999865322
Q ss_pred cccceec--ccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC-eeEEEeCCCC
Q 010390 210 SKRVSRR--KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG-ISSLSQDSNG 286 (512)
Q Consensus 210 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~ 286 (512)
..+ ..|...|.+++|+|++..++++ +.|+.|++||+++++..... ...|... +.++.|+|++
T Consensus 168 ----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 232 (402)
T 2aq5_A 168 ----LTLGPDVHPDTIYSVDWSRDGALICTS-CRDKRVRVIEPRKGTVVAEK----------DRPHEGTRPVHAVFVSEG 232 (402)
T ss_dssp ----EEECTTTCCSCEEEEEECTTSSCEEEE-ETTSEEEEEETTTTEEEEEE----------ECSSCSSSCCEEEECSTT
T ss_pred ----EEEecCCCCCceEEEEECCCCCEEEEE-ecCCcEEEEeCCCCceeeee----------ccCCCCCcceEEEEcCCC
Confidence 133 4678899999999999988875 48999999999987765532 1344444 8999999999
Q ss_pred CEEEEE---ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE-EecCCCCEEEEecCCCCCCCceecc-
Q 010390 287 VFLTAS---CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL-SGSSDGNAYVWQVNKPQADPIKLKS- 361 (512)
Q Consensus 287 ~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~~~~~- 361 (512)
.+|+++ +.|+.|++||++...... .... ......+..++|+|++++|+ +|+.||.|++||+.+++.....+..
T Consensus 233 ~~l~~g~~~~~d~~i~iwd~~~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 233 KILTTGFSRMSERQVALWDTKHLEEPL-SLQE-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp EEEEEEECTTCCEEEEEEETTBCSSCS-EEEE-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred cEEEEeccCCCCceEEEEcCccccCCc-eEEe-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence 999999 799999999997754322 2211 12234577899999999986 5667999999999987743344444
Q ss_pred -ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 362 -HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 362 -h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
|...|.+++|+|++ .++++ .|+.+++|++.++++.
T Consensus 311 ~~~~~v~~~~~sp~~-~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 311 SSKESQRGMGYMPKR-GLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp CCSSCCSEEEECCGG-GSCGG--GTEEEEEEEEETTEEE
T ss_pred ccCCcccceEEeccc-cccee--cceeEEEEEcCCCcEE
Confidence 45899999999998 66654 5679999999987643
No 76
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.1e-35 Score=297.24 Aligned_cols=311 Identities=11% Similarity=0.139 Sum_probs=250.7
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCc-EEEEEEec--CC
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA-IFDLCWIK--ED 120 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~s~--~~ 120 (512)
.....|.+.|.+++| +|+|++||+++ ++.|+|||+.++.. .......+.+|.+. |++++|+| ++
T Consensus 12 ~~~~~~~~~v~~~~~---spdg~~l~~~~-~~~v~v~~~~~~~~---------~~~~~~~~~~h~~~~v~~~~~sp~~~~ 78 (615)
T 1pgu_A 12 PQPSTQRNFTTHLSY---DPTTNAIAYPC-GKSAFVRCLDDGDS---------KVPPVVQFTGHGSSVVTTVKFSPIKGS 78 (615)
T ss_dssp CCCCCCTTCCCCCEE---ETTTTEEEEEE-TTEEEEEECCSSCC---------SSCSEEEECTTTTSCEEEEEECSSTTC
T ss_pred CCCCCccCceeEEEE---CCCCCEEEEec-CCeEEEEECCCCCC---------ccccceEEecCCCceEEEEEECcCCCC
Confidence 345579999999999 99999999998 88999999986510 01237778899999 99999999 99
Q ss_pred CEEEEEeCCCcEEEEeCCCC--------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCC
Q 010390 121 TNILTASGDQTIKIWDAEKK--------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKS 188 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~ 188 (512)
++|++|+.||.|+|||+.++ +....+..|...|.+++|+|++ .+|++++.+ +.|++||.. +
T Consensus 79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~d~~--~---- 151 (615)
T 1pgu_A 79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSG--N---- 151 (615)
T ss_dssp CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTC--C----
T ss_pred CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEEECC--C----
Confidence 99999999999999999754 6777888899999999999998 889999887 689999832 1
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccc
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS 268 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 268 (512)
....+..|...|.+++|+|++..++++++.|+.|++||+.+.+...
T Consensus 152 -----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~----------- 197 (615)
T 1pgu_A 152 -----------------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA----------- 197 (615)
T ss_dssp -----------------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE-----------
T ss_pred -----------------------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee-----------
Confidence 1224557888999999999998555557789999999998877655
Q ss_pred ccccccc---CeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeec--eeceeEEEEEECCCCCEEEEecCCC
Q 010390 269 AKETRLH---GISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC--RIESFYVKSEICPNASHILSGSSDG 342 (512)
Q Consensus 269 ~~~~~~~---~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg 342 (512)
.+..|.. .|.+++|+|+ +++|++++.||.|++||+.+. ..+..+... .....+.+++|+ ++++|++++.|+
T Consensus 198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 274 (615)
T 1pgu_A 198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG--EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA 274 (615)
T ss_dssp EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC--CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC--CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence 3455666 8999999999 999999999999999998653 333444110 234568899999 999999999999
Q ss_pred CEEEEecCCCCCCCceeccc----cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeecc
Q 010390 343 NAYVWQVNKPQADPIKLKSH----DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPS 416 (512)
Q Consensus 343 ~i~iw~~~~~~~~~~~~~~h----~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 416 (512)
.|++||+.+++. ...+..+ ...+.++.|. ++ .++++++.||.|++||+.+++.+..+. .+...+.++.+
T Consensus 275 ~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~--~~~~~v~~~~~ 347 (615)
T 1pgu_A 275 TIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTIS--GHNKGITALTV 347 (615)
T ss_dssp EEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEEC--CCSSCEEEEET
T ss_pred cEEEEECCCCcE-EEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEe--CCCCCEEEEEe
Confidence 999999988765 3455544 4678899986 66 799999999999999999887766543 23445555555
No 77
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=281.70 Aligned_cols=266 Identities=13% Similarity=0.229 Sum_probs=216.7
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
|.+...+.||.++|.+++| +|++++||+|+.||.|+|||+.... ...+..+.+|...|++++|+++
T Consensus 1 G~~~~~~~~h~~~v~~~~~---s~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~ 66 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVL---DYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHP 66 (379)
T ss_dssp ----CCEEECCCCEEEEEE---CSSSSEEEEEETTSCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCG
T ss_pred CCccEEecCCcccEEEEEE---cCCCCEEEEEECCCcEEEEecCCCc-----------ceeeeEecCCCCcEEEEEeCCC
Confidence 3456778899999999999 9999999999999999999987432 2446778899999999999976
Q ss_pred --CCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCC--CCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 120 --DTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPT--NSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 120 --~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
+++|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ + .+|++++.|+.|++||++.......
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~----- 140 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP----- 140 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCE-----
T ss_pred CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceee-----
Confidence 9999999999999999999987 77788889999999999998 6 8999999999999999987643221
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEee-------------cCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-------------DEVSIATASAVNSIVKFWDTRNLKAQITQA 260 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~ 260 (512)
.....|...|.+++|+| ++..+++ ++.|+.|++||+++........
T Consensus 141 --------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~ 199 (379)
T 3jrp_A 141 --------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLE 199 (379)
T ss_dssp --------------------EEEECCTTCEEEEEECCCC----------CTTCEEEE-EETTSCEEEEEEETTTTEEEEE
T ss_pred --------------------EEecCCCCceEEEEEcCccccccccccCCCCCCEEEE-EeCCCeEEEEEecCCCcceeeE
Confidence 13456788999999999 5777776 5589999999998765432111
Q ss_pred CCCccccccccccccCeeEEEeCCC---CCEEEEEecCCeEEEEEcccCCCCceEe-eeeceeceeEEEEEECCCCCEEE
Q 010390 261 WPHAESSSAKETRLHGISSLSQDSN---GVFLTASCMDHRIYLYNVLQLDKGPIQH-FSGCRIESFYVKSEICPNASHIL 336 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~ 336 (512)
.....|...|.+++|+|+ +.+|++++.||.|++||+.......... .........+.+++|+|++++|+
T Consensus 200 -------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 272 (379)
T 3jrp_A 200 -------STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 272 (379)
T ss_dssp -------EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred -------EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence 035667889999999999 8999999999999999997754332222 22223456688999999999999
Q ss_pred EecCCCCEEEEecCCCC
Q 010390 337 SGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 337 ~g~~dg~i~iw~~~~~~ 353 (512)
+++.||.|++|++....
T Consensus 273 ~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 273 LSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEESSSSEEEEEEEETT
T ss_pred EecCCCcEEEEeCCCCC
Confidence 99999999999998543
No 78
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=294.28 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=199.6
Q ss_pred ccCCcceEEEEEecCCC------cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 49 EETPPLAVSFCKTSKNS------HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~------~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
+.++|.+|+|++..++. ++||+|+.++. . -..+|+++.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~----------------------------~~~~~~~~~ 175 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D----------------------------EPLNEHLEM 175 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------------------------------------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C----------------------------Cccchhhhh
Confidence 46789999995432111 79999986531 0 012688999
Q ss_pred EEEEeCCCcEEEEeCCCCeee----ecccCcCCCEEEEEeeCCC-----CCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 123 ILTASGDQTIKIWDAEKKKCT----GALMGHTGSIKSLCSHPTN-----SDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~----~~~~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
|++++.|++|+|||+.+++.. ..+..|.+.|.+++|+|++ ..+|++++.||+|++||+..+.......
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--- 252 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--- 252 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE---
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc---
Confidence 999999999999999877642 3456678899999999961 3699999999999999998654321000
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
.........+.+|...|++++|++++ .++ +|+.||+|++||++++..... .+..|
T Consensus 253 -------------~~~~~p~~~l~~h~~~v~sv~~s~~~-~la-sgs~DgtV~lWD~~~~~~~~~----------~~~~H 307 (524)
T 2j04_B 253 -------------KMCEKPSLTLSLADSLITTFDFLSPT-TVV-CGFKNGFVAEFDLTDPEVPSF----------YDQVH 307 (524)
T ss_dssp -------------ECCCSCSEEECCTTTCEEEEEESSSS-EEE-EEETTSEEEEEETTBCSSCSE----------EEECS
T ss_pred -------------eeecCceEEEEcCCCCEEEEEecCCC-eEE-EEeCCCEEEEEECCCCCCceE----------Eeecc
Confidence 00011222456788899999999864 454 577899999999987643221 35678
Q ss_pred ccCeeEE--EeCCCC-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 274 LHGISSL--SQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 274 ~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
...|.++ .|++++ .+|++++.|++|++||+++... ...+.++.....+.+++|+|+++.+++++.|++|++||++
T Consensus 308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~--~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~ 385 (524)
T 2j04_B 308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT--TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR 385 (524)
T ss_dssp SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH--HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT
T ss_pred cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc--ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc
Confidence 8899999 578888 8999999999999999976432 2233333322235678999999999999999999999999
Q ss_pred CCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 351 KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 351 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
++.. ...+.+|.+.|++|+|+|++ .+|++|+.||+|++||+..+
T Consensus 386 ~~~~-~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 386 AAFA-VHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CTTC-CEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSS
T ss_pred cccc-ceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHh
Confidence 8766 45778899999999999999 89999999999999998764
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-35 Score=280.52 Aligned_cols=258 Identities=19% Similarity=0.228 Sum_probs=212.5
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC--CCeeeecccCcCCCEEEEEeeCC--CCCeEEEEeCCCcEE
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAE--KKKCTGALMGHTGSIKSLCSHPT--NSDILVSGSRDGSFA 176 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~ 176 (512)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ + .+|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEE
Confidence 56778999999999999999999999999999999998 66778889999999999999876 5 8999999999999
Q ss_pred EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCcc
Q 010390 177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
+||+.+++. ........|...|.+++|+|+ +..+++ ++.|+.|++||+++..
T Consensus 83 iwd~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 83 IWKEENGRW-------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENG 136 (379)
T ss_dssp EEEEETTEE-------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECCTTS
T ss_pred EEEcCCCce-------------------------eEeeeecCCCcceEEEEeCCCCCCCEEEE-ecCCCcEEEEecCCCC
Confidence 999986431 122244567889999999999 777777 5589999999999874
Q ss_pred ceecccCCCccccccccccccCeeEEEeCC-------------CCCEEEEEecCCeEEEEEcccCCCC--ceEeeeecee
Q 010390 255 AQITQAWPHAESSSAKETRLHGISSLSQDS-------------NGVFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRI 319 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~ 319 (512)
..... ....|...|.+++|+| ++.+|++++.||.|++||++..... ....+.+|
T Consensus 137 ~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h-- 205 (379)
T 3jrp_A 137 TTSPI---------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-- 205 (379)
T ss_dssp CCCEE---------EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--
T ss_pred ceeeE---------EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc--
Confidence 43222 3556778899999999 6999999999999999999765432 22233333
Q ss_pred ceeEEEEEECCC---CCEEEEecCCCCEEEEecCCCCCCC----ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 320 ESFYVKSEICPN---ASHILSGSSDGNAYVWQVNKPQADP----IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 320 ~~~~~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~~~----~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
...+.+++|+|+ +++|++++.||.|++||+....... .....|...|++++|+|++ .+|++++.||.|++|+
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK 284 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEE
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEe
Confidence 456889999999 8999999999999999998864321 1223488899999999999 8999999999999999
Q ss_pred CCCCc
Q 010390 393 LENSR 397 (512)
Q Consensus 393 ~~~~~ 397 (512)
+..+.
T Consensus 285 ~~~~~ 289 (379)
T 3jrp_A 285 ENLEG 289 (379)
T ss_dssp EEETT
T ss_pred CCCCC
Confidence 98543
No 80
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.5e-35 Score=272.63 Aligned_cols=301 Identities=18% Similarity=0.296 Sum_probs=228.8
Q ss_pred cceeccccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCe-----eeecccCcCCCEEEEEeeCCCCCeEEEEeCC
Q 010390 99 ARISDWVAHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEKKK-----CTGALMGHTGSIKSLCSHPTNSDILVSGSRD 172 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 172 (512)
....+|++|.+.|++|+|+|+ +++|+||+.|++|+|||+.+.+ +...+.+|...|.+++|+|++ .+|++++.|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d 107 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWD 107 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEccc
Confidence 345678999999999999997 6899999999999999987653 466788999999999999988 899999999
Q ss_pred CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC
Q 010390 173 GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN 252 (512)
Q Consensus 173 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~ 252 (512)
+.|++|+....... .....+...+..+.+++++..+++ ++.|+.+++||+..
T Consensus 108 ~~i~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~l~s-~s~d~~~~~~d~~~ 159 (340)
T 4aow_A 108 GTLRLWDLTTGTTT---------------------------RRFVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLG 159 (340)
T ss_dssp SEEEEEETTTTEEE---------------------------EEEECCSSCEEEEEECTTSSCEEE-EETTSCEEEECTTS
T ss_pred ccceEEeeccccee---------------------------eeecCCCCceeEEEEeecCcccee-ecCCCeEEEEEeCC
Confidence 99999998754321 133455667888899999998887 55899999999987
Q ss_pred ccceecccCCCccccccccccccCeeEEEeCCCC--CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390 253 LKAQITQAWPHAESSSAKETRLHGISSLSQDSNG--VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP 330 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 330 (512)
...... ....|...+..++|++++ .++++++.|+.|++||+... .....+.++ ...+.+++|+|
T Consensus 160 ~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~--~~~~~~~~h--~~~v~~~~~s~ 225 (340)
T 4aow_A 160 VCKYTV----------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC--KLKTNHIGH--TGYLNTVTVSP 225 (340)
T ss_dssp CEEEEE----------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT--EEEEEECCC--SSCEEEEEECT
T ss_pred CceEEE----------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC--ceeeEecCC--CCcEEEEEECC
Confidence 654433 355667789999998764 57889999999999998763 334444444 35688999999
Q ss_pred CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccce
Q 010390 331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRR 410 (512)
Q Consensus 331 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 410 (512)
++++|++|+.||.|++||+.+.+. ...+. +...|.+++|+|++ .+++++.|+.|++||++++.++..+.....
T Consensus 226 ~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--- 298 (340)
T 4aow_A 226 DGSLCASGGKDGQAMLWDLNEGKH-LYTLD-GGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVI--- 298 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-----
T ss_pred CCCEEEEEeCCCeEEEEEeccCce-eeeec-CCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccce---
Confidence 999999999999999999988765 34444 45689999999986 567777899999999998876654332110
Q ss_pred eeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCch
Q 010390 411 VMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPE 463 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 463 (512)
......+...+. .++|+||+++++.++... .+.+|....
T Consensus 299 ------------~~~~~~h~~~v~-~l~~s~dg~~l~sgs~Dg-~v~iW~~~t 337 (340)
T 4aow_A 299 ------------STSSKAEPPQCT-SLAWSADGQTLFAGYTDN-LVRVWQVTI 337 (340)
T ss_dssp -----------------CCCCCEE-EEEECTTSSEEEEEETTS-CEEEEEEEC
T ss_pred ------------eeeccCCCCCEE-EEEECCCCCEEEEEeCCC-EEEEEeCCC
Confidence 001111222233 678999999888775432 445555443
No 81
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-34 Score=280.05 Aligned_cols=285 Identities=15% Similarity=0.272 Sum_probs=236.7
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
+.....+.+|.+.|.+++| + +++|++|+.||.|++||+.++. .+..+.+|...|.+++|+
T Consensus 149 ~~~~~~~~~h~~~v~~~~~---~--~~~l~s~~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~~~~~-- 208 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQM---R--DNIIISGSTDRTLKVWNAETGE-------------CIHTLYGHTSTVRCMHLH-- 208 (445)
T ss_dssp CCEEEECCCCSSCEEEEEE---E--TTEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEE--
T ss_pred CcEEEEEcCCCCCEEEEEe---c--CCEEEEEeCCCeEEEEECCcCc-------------EEEEECCCCCcEEEEEec--
Confidence 4566778899999999999 4 6799999999999999997763 367788999999999995
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
++.|++|+.||.|++||+.+++.+..+.+|...|.+++| ++ .++++++.||.|++||+++++.
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~-------------- 271 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETC-------------- 271 (445)
T ss_dssp TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEE--------------
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcE--------------
Confidence 578999999999999999999999999999999999999 34 7899999999999999875432
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
...+..|...+.++.| ++..+++ ++.|+.|++||+++++... ....|...+.+
T Consensus 272 -------------~~~~~~~~~~v~~~~~--~~~~l~~-~~~d~~i~i~d~~~~~~~~-----------~~~~~~~~v~~ 324 (445)
T 2ovr_B 272 -------------LHTLQGHTNRVYSLQF--DGIHVVS-GSLDTSIRVWDVETGNCIH-----------TLTGHQSLTSG 324 (445)
T ss_dssp -------------EEEECCCSSCEEEEEE--CSSEEEE-EETTSCEEEEETTTCCEEE-----------EECCCCSCEEE
T ss_pred -------------eEEecCCCCceEEEEE--CCCEEEE-EeCCCeEEEEECCCCCEEE-----------EEcCCcccEEE
Confidence 2244567889999999 6777776 5589999999999887665 34566677888
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec-eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC-RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
+.++ +.++++++.||.|++||+.+. ..+..+..+ .....+.+++|+ +++|++|+.||.|++||+.+++.. ..
T Consensus 325 ~~~~--~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~-~~ 397 (445)
T 2ovr_B 325 MELK--DNILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI-RN 397 (445)
T ss_dssp EEEE--TTEEEEEETTSCEEEEETTTC--CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE-EE
T ss_pred EEEe--CCEEEEEeCCCeEEEEECCCC--cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee-ee
Confidence 7774 669999999999999999763 344455442 134567888885 689999999999999999988753 34
Q ss_pred e-----ccccCCeEEEEeCCCCCCeEEEEeCCCc----EEEEeCCCC
Q 010390 359 L-----KSHDGEVTAVNWCPNEAGKIVTSSDDYT----VRLWSLENS 396 (512)
Q Consensus 359 ~-----~~h~~~v~~v~~~~~~~~~l~s~~~dg~----i~vwd~~~~ 396 (512)
+ .+|.+.|++++|+|++ .++++|+.||+ |.+||+...
T Consensus 398 ~~~~~~~~~~~~v~~~~~s~~~-~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 398 LVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeccccCCCCceEEEEEecCCE-EEEEEcccCCCCccEEEEEECCCC
Confidence 4 4788899999999999 89999999998 999999753
No 82
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-34 Score=274.96 Aligned_cols=258 Identities=12% Similarity=0.139 Sum_probs=206.8
Q ss_pred cceeccccCCCcEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcE
Q 010390 99 ARISDWVAHQNAIFDLCWIKED-TNILTASGDQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSF 175 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i 175 (512)
.....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+|+++.+|++++.|+.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 4466778999999999999998 999999999999999999887766654 6999999999999544899999999999
Q ss_pred EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390 176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA 255 (512)
Q Consensus 176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~ 255 (512)
++||++.... ........+...|.+++|+|++..+++ ++.|+.|++||++ ++.
T Consensus 144 ~iwd~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~-~~~ 196 (383)
T 3ei3_B 144 TLRDFSGSVI-------------------------QVFAKTDSWDYWYCCVDVSVSRQMLAT-GDSTGRLLLLGLD-GHE 196 (383)
T ss_dssp EEEETTSCEE-------------------------EEEECCCCSSCCEEEEEEETTTTEEEE-EETTSEEEEEETT-SCE
T ss_pred EEEECCCCce-------------------------EEEeccCCCCCCeEEEEECCCCCEEEE-ECCCCCEEEEECC-CCE
Confidence 9999984211 001112234578999999999998887 5589999999995 333
Q ss_pred eecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCC--CceEeeeeceeceeEEEEEECC-C
Q 010390 256 QITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDK--GPIQHFSGCRIESFYVKSEICP-N 331 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~-~ 331 (512)
.. .+..|...|.+++|+|++. +|++++.|+.|++||++.... ..+..+ + ....+.+++|+| +
T Consensus 197 ~~-----------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~~~v~~~~~s~~~ 262 (383)
T 3ei3_B 197 IF-----------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P--HEKPVNAAYFNPTD 262 (383)
T ss_dssp EE-----------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E--CSSCEEEEEECTTT
T ss_pred EE-----------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c--CCCceEEEEEcCCC
Confidence 22 4567888999999999999 999999999999999987442 223333 2 356788999999 9
Q ss_pred CCEEEEecCCCCEEEEecCCCCCCCceecccc-----------------CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 332 ASHILSGSSDGNAYVWQVNKPQADPIKLKSHD-----------------GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 332 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~-----------------~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
+++|++++.|+.|++||+.+.... ..+.+|. +.+..++|+|++ .+ +++.||.|++||+.
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDWSKP-DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBTTSC-SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCCccc-cccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecC
Confidence 999999999999999999887663 3444332 345567788887 55 88899999999999
Q ss_pred CCccccc
Q 010390 395 NSRCSSM 401 (512)
Q Consensus 395 ~~~~~~~ 401 (512)
+++++..
T Consensus 339 ~~~~~~~ 345 (383)
T 3ei3_B 339 SGGLVHQ 345 (383)
T ss_dssp TCCEEEE
T ss_pred CCceeee
Confidence 9887665
No 83
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-34 Score=281.45 Aligned_cols=284 Identities=16% Similarity=0.271 Sum_probs=230.8
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK- 118 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~- 118 (512)
+.....+.+|.++|.+++| +|++ +|++|+.||.|++||++++. .+..+.+|.+.|.+++|++
T Consensus 152 ~~~~~~~~~h~~~V~~l~~---~~~~-~l~s~s~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKY---AHGG-ILVSGSTDRTVRVWDIKKGC-------------CTHVFEGHNSTVRCLDIVEY 214 (464)
T ss_dssp TEEEEEECCCSSCEEEEEE---CSTT-EEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEEES
T ss_pred CcEEEEEeCCCcCEEEEEE---cCCC-EEEEEeCCCCEEEEECCCCc-------------EEEEECCCCCccEEEEEecC
Confidence 4566678899999999999 8887 99999999999999998763 3677889999999999994
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCee-----------------------eecccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390 119 -EDTNILTASGDQTIKIWDAEKKKC-----------------------TGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174 (512)
Q Consensus 119 -~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 174 (512)
++.+|++|+.||.|++||+.++.. +..+.+|...|.++. +++ .++++++.||.
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~ 291 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNT 291 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSC
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCe
Confidence 778999999999999999987653 445678889998875 445 89999999999
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
|++||+++++. ...+..|...|.+++|+|++..+++ |+.||.|++||+++++
T Consensus 292 i~vwd~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 292 LIVWDVAQMKC---------------------------LYILSGHTDRIYSTIYDHERKRCIS-ASMDTTIRIWDLENGE 343 (464)
T ss_dssp EEEEETTTTEE---------------------------EEEECCCSSCEEEEEEETTTTEEEE-EETTSCEEEEETTTTE
T ss_pred EEEEECCCCcE---------------------------EEEecCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCc
Confidence 99999985432 2245578889999999999999887 5589999999999887
Q ss_pred ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE
Q 010390 255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH 334 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 334 (512)
... .+..|...|.++.++ +.+|++++.||.|++||+.+.. ...... ....+..++|++++++
T Consensus 344 ~~~-----------~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~--~~~~~~---~~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 344 LMY-----------TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--RKFSYH---HTNLSAITTFYVSDNI 405 (464)
T ss_dssp EEE-----------EECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--EEEEEE---CTTCCCEEEEEECSSE
T ss_pred EEE-----------EEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc--eeeeec---CCCCccEEEEEeCCCE
Confidence 665 456788889999997 5799999999999999997633 222221 2233455789999999
Q ss_pred EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 335 l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
|++|+ ||.|++||+.+++.....+..|...|.+++|+. + .++++++.||.+.+|-
T Consensus 406 l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~-~-~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 406 LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-K-TLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEET-T-EEEEEEEETTEEEEEE
T ss_pred EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecC-C-EEEEEEEeCCeEEEEE
Confidence 99998 899999999998764444678899999999973 2 5677777888666554
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-34 Score=274.93 Aligned_cols=263 Identities=16% Similarity=0.263 Sum_probs=206.6
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
+|.+.|.+++| +|++++||+|+.||.|+|||+.++. .+..+.+|...|.+++| ++++|++|+
T Consensus 132 ~~~~~v~~v~~---s~~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~v~~~~~--~~~~l~~~~ 193 (401)
T 4aez_A 132 DESTYVASVKW---SHDGSFLSVGLGNGLVDIYDVESQT-------------KLRTMAGHQARVGCLSW--NRHVLSSGS 193 (401)
T ss_dssp CTTCCEEEEEE---CTTSSEEEEEETTSCEEEEETTTCC-------------EEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred CCCCCEEEEEE---CCCCCEEEEECCCCeEEEEECcCCe-------------EEEEecCCCCceEEEEE--CCCEEEEEc
Confidence 38889999999 9999999999999999999997763 36777899999999999 467999999
Q ss_pred CCCcEEEEeCC-CCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 128 GDQTIKIWDAE-KKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 128 ~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
.||.|++||+. .+..+..+.+|.+.|.+++|+|++ .+|++++.||.|++||+++...
T Consensus 194 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~--------------------- 251 (401)
T 4aez_A 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIP--------------------- 251 (401)
T ss_dssp TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSE---------------------
T ss_pred CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCc---------------------
Confidence 99999999998 566788889999999999999987 8999999999999999986432
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEee--cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASA--VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (512)
...+..|...|.+++|+|++..++++++ .|+.|++||+++++.... ..+...|.+++|+|
T Consensus 252 ------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~------------~~~~~~v~~~~~s~ 313 (401)
T 4aez_A 252 ------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT------------VDAGSQVTSLIWSP 313 (401)
T ss_dssp ------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE------------EECSSCEEEEEECS
T ss_pred ------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE------------EeCCCcEEEEEECC
Confidence 1234567889999999998887777764 799999999998876543 23456799999999
Q ss_pred CCCEEEEE--ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390 285 NGVFLTAS--CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362 (512)
Q Consensus 285 ~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h 362 (512)
++.+++++ +.||.|++||+..........+.++ ...+.+++|+|++++|++++.||.|++|++.+++........+
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 391 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH--DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPIT 391 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC--SSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----------
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCC--CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccccccc
Confidence 99999995 4899999999976443333344444 3567889999999999999999999999999877644333333
Q ss_pred cCCeEEEE
Q 010390 363 DGEVTAVN 370 (512)
Q Consensus 363 ~~~v~~v~ 370 (512)
.....++.
T Consensus 392 ~~~~~~i~ 399 (401)
T 4aez_A 392 KTPSSSIT 399 (401)
T ss_dssp --------
T ss_pred CCCcccee
Confidence 44444443
No 85
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.3e-35 Score=282.89 Aligned_cols=297 Identities=13% Similarity=0.143 Sum_probs=212.6
Q ss_pred eeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390 101 ISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI 177 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 177 (512)
......|...|++|+|+| ++.+||+|+.||+|+|||+.+++. ...+.+|.+.|++|+|+|.++++|++++.||+|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 344567889999999999 567899999999999999987654 44567899999999999966689999999999999
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
||++...... ......+...+.+++|+|++..+++ |+.||.|++||++.... .
T Consensus 192 wd~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~l~~-g~~dg~i~~wd~~~~~~-~ 244 (435)
T 4e54_B 192 QDFKGNILRV-------------------------FASSDTINIWFCSLDVSASSRMVVT-GDNVGNVILLNMDGKEL-W 244 (435)
T ss_dssp EETTSCEEEE-------------------------EECCSSCSCCCCCEEEETTTTEEEE-ECSSSBEEEEESSSCBC-C
T ss_pred eeccCCceeE-------------------------EeccCCCCccEEEEEECCCCCEEEE-EeCCCcEeeeccCccee-E
Confidence 9997532110 0011233446789999999998887 55899999999875332 1
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCce-EeeeeceeceeEEEEEECCCCCEE
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPI-QHFSGCRIESFYVKSEICPNASHI 335 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l 335 (512)
.+..|...|.+++|+|++. +|++++.|+.|++||++....... ....+ +...+.+++|+|++++|
T Consensus 245 -----------~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~spdg~~l 311 (435)
T 4e54_B 245 -----------NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP--HRHPVNAACFSPDGARL 311 (435)
T ss_dssp -----------CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCB--CSSCEEECCBCTTSSEE
T ss_pred -----------EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeee--ccccccceeECCCCCee
Confidence 4667888999999999876 788999999999999977543322 12222 34568889999999999
Q ss_pred EEecCCCCEEEEecCCCCCCCceeccccC------CeEEEEeCCCCCCeEEEE------------eCCCcEEEEeCCCCc
Q 010390 336 LSGSSDGNAYVWQVNKPQADPIKLKSHDG------EVTAVNWCPNEAGKIVTS------------SDDYTVRLWSLENSR 397 (512)
Q Consensus 336 ~~g~~dg~i~iw~~~~~~~~~~~~~~h~~------~v~~v~~~~~~~~~l~s~------------~~dg~i~vwd~~~~~ 397 (512)
++|+.||.|+|||+.++... ..+..|.. .+..+.|+|++ .+++++ ..++.|++||..+++
T Consensus 312 ~s~~~D~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 312 LTTDQKSEIRVYSASQWDCP-LGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp EEEESSSCEEEEESSSSSSE-EEECCCCCCCCSSSCCCBCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred EEEcCCCEEEEEECCCCccc-eEEecccccccccceeEEEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 99999999999999887653 33333321 22334556655 344443 244689999999887
Q ss_pred ccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCchh
Q 010390 398 CSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEA 464 (512)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 464 (512)
++..+.. .+...+....+|+|++.+++.++.. .+.+|...++
T Consensus 390 ~~~~l~~-----------------------~~~~~v~s~~~fspdg~~lasg~d~--~i~iW~~~~g 431 (435)
T 4e54_B 390 MMCQLYD-----------------------PESSGISSLNEFNPMGDTLASAMGY--HILIWSQQEA 431 (435)
T ss_dssp EEEEECC-----------------------SSCCCCCCEEEECTTSSCEEEECSS--EEEECCCC--
T ss_pred EEEEEeC-----------------------CCCCcEEEEEEECCCCCEEEEEcCC--cEEEEECCcC
Confidence 6553211 0111122123688999888877543 4566666544
No 86
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-35 Score=278.90 Aligned_cols=275 Identities=8% Similarity=0.051 Sum_probs=211.6
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.+....+.....|.+|+| ||||+++|+++.|++|+ |.... ..+.+|...|++++|+|+|
T Consensus 6 ~~~~~~~~~~~~v~sv~~---SpDG~~iASas~D~TV~--d~~~~----------------~~l~gh~~~v~~V~FsPdg 64 (588)
T 2j04_A 6 DLLVDRKEFEDWKNNLTW---ARDGTLYLTTFPDISIG--QPKYA----------------KDINCNSKNLFHVKEFPLE 64 (588)
T ss_dssp CEEECSCCCSSSSCCEEE---CTTSCEEEECSSSEEEE--EECCC----------------SCCSSBGGGTEEEEEECCC
T ss_pred hhcccHhHhhccEEEEEE---CCCCCEEEEEcCCceee--ccccc----------------ceecCCCccEEEEEECCCC
Confidence 345666778899999999 99999999999999999 64322 3347899999999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
.++.+.+|+.+.. ....+ .|...|.+++|+|+| .+||+++.||.|++||... .
T Consensus 65 -------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~--------------- 117 (588)
T 2j04_A 65 -------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--M--------------- 117 (588)
T ss_dssp -------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--E---------------
T ss_pred -------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--e---------------
Confidence 4665555554322 23333 458899999999998 9999999999999999542 0
Q ss_pred ccccccccccccceecccccc-----cEEEEEEeecCCEEEEEeecCCeEEEEeccCccc-------eecccCCCccccc
Q 010390 201 VKGAHLLSQSKRVSRRKAASM-----SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA-------QITQAWPHAESSS 268 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~ 268 (512)
...+. |.. .+.+++|+|+|+.+++++ .||+|++||+.++.. ..... .
T Consensus 118 ------------l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs-~DGtVkIWd~~~~~l~~~~~i~l~ti~-------~ 176 (588)
T 2j04_A 118 ------------LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN-EDGELQFFSIRKNSENTPEFYFESSIR-------L 176 (588)
T ss_dssp ------------EEECC-CSSCSTTTCEEEEEECSSSSCEEEEE-TTSEEEEEECCCCTTTCCCCEEEEEEE-------C
T ss_pred ------------eeecc-CCCccccccEEEEEEcCCCCEEEEEc-CCCEEEEEECCCCccccccceeeeeee-------c
Confidence 00112 222 599999999999999855 899999999998643 11100 0
Q ss_pred cccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC-ceEeee-eceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390 269 AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG-PIQHFS-GCRIESFYVKSEICPNASHILSGSSDGNAYV 346 (512)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 346 (512)
...+|...|.+++|+|+| +++++.|+.|++||+...... ....+. ++ ...+.+++|+ ++.||+++ ++.|++
T Consensus 177 ~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V~svaFs--g~~LASa~-~~tIkL 249 (588)
T 2j04_A 177 SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKITDLKIV--DYKVVLTC-PGYVHK 249 (588)
T ss_dssp SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCCCCEEEE--TTEEEEEC-SSEEEE
T ss_pred ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcEEEEEEE--CCEEEEEe-CCeEEE
Confidence 125577899999999999 888899999999999764432 223342 33 2457779998 68899887 699999
Q ss_pred EecCCCCCCCceeccccCCeEEEEe--CCCCCCeEEEEeCCCcEEEEeCC
Q 010390 347 WQVNKPQADPIKLKSHDGEVTAVNW--CPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 347 w~~~~~~~~~~~~~~h~~~v~~v~~--~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
||+.+.+.. ....+|.+.|.+++| +|++ ..|++++.||+ ++|..+
T Consensus 250 Wd~~~~~~~-~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 250 IDLKNYSIS-SLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EETTTTEEE-EEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESS
T ss_pred EECCCCeEE-EEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeec
Confidence 999886652 233389999999999 9999 89999999999 999987
No 87
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=279.82 Aligned_cols=288 Identities=13% Similarity=0.130 Sum_probs=209.2
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-----------eeecccCcC------------CCEEEEEeeCCC
Q 010390 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-----------CTGALMGHT------------GSIKSLCSHPTN 162 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~l~~~~~~ 162 (512)
.|.+.|++++|+|++++|++|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999998876 577888998 889999999986
Q ss_pred C-CeEEEEeCCCcEEEEeCCCCCCCCCccc----cce------eeeccc---ccccccccccccceecccccccEEEEEE
Q 010390 163 S-DILVSGSRDGSFAIWDLRCKSSPKSNCA----ESF------VFSSAV---VKGAHLLSQSKRVSRRKAASMSITSVLY 228 (512)
Q Consensus 163 ~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (512)
. .+|++++.|+.|++||+..+........ ... +....+ ..................|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 4 5899999999999999875332100000 000 000000 0000000000001123578999999999
Q ss_pred eecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEcccCC
Q 010390 229 LKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNVLQLD 307 (512)
Q Consensus 229 ~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 307 (512)
+|++..+++ | .|+.|++||+++............ .....|...|.+++|+|++ .+|++++.||.|++||++...
T Consensus 186 ~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 186 NSDYETYLS-A-DDLRINLWHLEITDRSFNIVDIKP---ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp CTTSSEEEE-E-CSSEEEEEETTEEEEEEEEEECCC---SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred cCCCCEEEE-e-CCCeEEEEECCCCCceeeeeeccc---ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 999998887 5 699999999995433222110000 0356788899999999998 999999999999999997754
Q ss_pred CC--ceEeeeecee----------ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCC----------
Q 010390 308 KG--PIQHFSGCRI----------ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGE---------- 365 (512)
Q Consensus 308 ~~--~~~~~~~~~~----------~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~---------- 365 (512)
.. ....+..+.. ...+.+++|+|++++|++++. +.|++||+.........+.+|...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 31 1344444431 126889999999999999998 999999998744446777778642
Q ss_pred -----eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 366 -----VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 366 -----v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
+..++|+|++ .+|++|+.||.|++||+.+++.+.
T Consensus 340 ~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 340 DCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp SGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEE
T ss_pred cccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCccee
Confidence 3349999999 899999999999999999998764
No 88
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.5e-34 Score=293.81 Aligned_cols=301 Identities=17% Similarity=0.273 Sum_probs=224.9
Q ss_pred eeccccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCCC-----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390 101 ISDWVAHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEKK-----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 174 (512)
...+++|.+.|++++|+|+ +++|++|+.|++|+|||+.+. .....+.+|...|.+++|+|++ .+|++|+.||.
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~ 453 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGE 453 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCc
Confidence 3457899999999999986 478999999999999998763 3456788999999999999988 99999999999
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
|++||+.++.. ...+.+|...|.+++|+|++..+++ |+.|+.|++||+....
T Consensus 454 v~vwd~~~~~~---------------------------~~~~~~h~~~v~~~~~s~~~~~l~s-~s~D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 454 LRLWDLAAGVS---------------------------TRRFVGHTKDVLSVAFSLDNRQIVS-ASRDRTIKLWNTLGEC 505 (694)
T ss_dssp EEEEETTTTEE---------------------------EEEEECCSSCEEEEEECTTSSCEEE-EETTSCEEEECTTSCE
T ss_pred EEEEECCCCcc---------------------------eeEEeCCCCCEEEEEEeCCCCEEEE-EeCCCEEEEEECCCCc
Confidence 99999975432 2255688999999999999999887 4589999999986543
Q ss_pred ceecccCCCccccccccccccCeeEEEeCCCC--CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390 255 AQITQAWPHAESSSAKETRLHGISSLSQDSNG--VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 332 (512)
...... ....|...|.+++|+|++ ..|++++.|+.|++||++.. .....+.+| ...+.+++|+|++
T Consensus 506 ~~~~~~--------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~--~~~~~~~~h--~~~v~~v~~spdg 573 (694)
T 3dm0_A 506 KYTISE--------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC--KLRSTLAGH--TGYVSTVAVSPDG 573 (694)
T ss_dssp EEEECS--------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECTTS
T ss_pred ceeecc--------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC--cEEEEEcCC--CCCEEEEEEeCCC
Confidence 322110 235677889999999987 58999999999999999753 344455554 3568899999999
Q ss_pred CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceee
Q 010390 333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVM 412 (512)
Q Consensus 333 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 412 (512)
++|++|+.||.|++||+.+++.. ..+ .+...|.+++|+|++ .+|++++ |+.|++||+.+++++..+..........
T Consensus 574 ~~l~sg~~Dg~i~iwd~~~~~~~-~~~-~~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 649 (694)
T 3dm0_A 574 SLCASGGKDGVVLLWDLAEGKKL-YSL-EANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEK 649 (694)
T ss_dssp SEEEEEETTSBCEEEETTTTEEE-ECC-BCSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----
T ss_pred CEEEEEeCCCeEEEEECCCCceE-EEe-cCCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCChhhhcccccccccc
Confidence 99999999999999999887652 333 345689999999998 6666655 5669999999998776543221100000
Q ss_pred eeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390 413 AIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD 452 (512)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 452 (512)
. .... ..........+. .++|+||++++++++..
T Consensus 650 ~-~~~~----~~~~~~~~~~~~-~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 650 A-DNSG----PAATKRKVIYCT-SLNWSADGSTLFSGYTD 683 (694)
T ss_dssp ----------------CCCCEE-EEEECTTSSEEEEEETT
T ss_pred c-cccc----cccCCceeEEee-eEEEcCCCCEEEEEcCC
Confidence 0 0000 000111111223 67899999999877543
No 89
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1e-33 Score=296.51 Aligned_cols=297 Identities=17% Similarity=0.204 Sum_probs=238.7
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
+.....+.+|.++|.+++| +|++++||+|+.||.|+|||+.++.. +..+.+|.+.|++++|+|+
T Consensus 45 ~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~dg~i~vw~~~~~~~-------------~~~~~~~~~~v~~~~~s~~ 108 (814)
T 3mkq_A 45 QVEVRSIQVTETPVRAGKF---IARKNWIIVGSDDFRIRVFNYNTGEK-------------VVDFEAHPDYIRSIAVHPT 108 (814)
T ss_dssp TEEEEEEECCSSCEEEEEE---EGGGTEEEEEETTSEEEEEETTTCCE-------------EEEEECCSSCEEEEEECSS
T ss_pred CceEEEEecCCCcEEEEEE---eCCCCEEEEEeCCCeEEEEECCCCcE-------------EEEEecCCCCEEEEEEeCC
Confidence 4556677789999999999 99999999999999999999987643 6777899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 120 DTNILTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
+++|++++.||.|++||+.++ .....+.+|...|.+++|+|.++..|++++.||.|++||+..+.....
T Consensus 109 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~---------- 178 (814)
T 3mkq_A 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT---------- 178 (814)
T ss_dssp SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE----------
T ss_pred CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE----------
Confidence 999999999999999999887 777888899999999999994438999999999999999976543221
Q ss_pred ccccccccccccccceecccccccEEEEEEee--cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLK--DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
....+...+.+++|+| ++..+++ ++.||.|++||+++++... ....|...
T Consensus 179 ----------------~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~-----------~~~~~~~~ 230 (814)
T 3mkq_A 179 ----------------LTTGQERGVNYVDYYPLPDKPYMIT-ASDDLTIKIWDYQTKSCVA-----------TLEGHMSN 230 (814)
T ss_dssp ----------------EECCCTTCCCEEEECCSTTCCEEEE-ECTTSEEEEEETTTTEEEE-----------EEECCSSC
T ss_pred ----------------EecCCCCCEEEEEEEECCCCCEEEE-EeCCCEEEEEECCCCcEEE-----------EEcCCCCC
Confidence 1113347899999999 8888777 5589999999999877654 35667788
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC--EEEEecCCCCEEEEecCCCCC
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS--HILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~g~~dg~i~iw~~~~~~~ 354 (512)
|.+++|+|++.+|++++.||.|++||+.+. .....+..+ ...+.+++|+|++. ++++++ ++.+.+|++.....
T Consensus 231 v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVG--LERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEP 305 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTC--SEEEEECCS--SSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEeecC--CCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCc
Confidence 999999999999999999999999998653 334444333 34578899999987 455555 56688888754321
Q ss_pred CC------------------------------------------ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 355 DP------------------------------------------IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 355 ~~------------------------------------------~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
.. .....+...+.+++|+|++ .++++++ |+.+.+|+
T Consensus 306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 306 TLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG-RFVTVVG-DGEYVIYT 383 (814)
T ss_dssp CEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS-SEEEEEE-TTEEEEEE
T ss_pred eeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC-CEEEEec-CCEEEEEE
Confidence 10 1123345578999999999 7888888 89999999
Q ss_pred CCCCc
Q 010390 393 LENSR 397 (512)
Q Consensus 393 ~~~~~ 397 (512)
+....
T Consensus 384 ~~~~~ 388 (814)
T 3mkq_A 384 ALAWR 388 (814)
T ss_dssp TTTTE
T ss_pred Ccccc
Confidence 86543
No 90
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=266.37 Aligned_cols=303 Identities=15% Similarity=0.160 Sum_probs=235.6
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
.....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.||.|++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEE
Confidence 4456788999999999999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-----CeEEEEeccCc
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-----SIVKFWDTRNL 253 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-----g~i~iwd~~~~ 253 (512)
|+.+++... .. .+...+.+++|+|++..+++++ .+ +.|.+||+...
T Consensus 102 d~~~~~~~~---------------------------~~-~~~~~v~~~~~~~~~~~l~~~~-~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 102 DVSNGQCVA---------------------------TW-KSPVPVKRVEFSPCGNYFLAIL-DNVMKNPGSINIYEIERD 152 (369)
T ss_dssp ETTTCCEEE---------------------------EE-ECSSCEEEEEECTTSSEEEEEE-CCBTTBCCEEEEEEEEEC
T ss_pred ECCCCcEEE---------------------------Ee-ecCCCeEEEEEccCCCEEEEec-CCccCCCCEEEEEEecCC
Confidence 998664322 11 2567899999999999998855 57 99999999877
Q ss_pred cceecccCCCcccccccccccc--CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC
Q 010390 254 KAQITQAWPHAESSSAKETRLH--GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN 331 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 331 (512)
...................+.. .+.+++|+|++++|++++.||.|++||+... ......+..+ ...+.+++|+|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~--~~~v~~~~~~~~ 229 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-YEYVDSIDLH--EKSISDMQFSPD 229 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-TEEEEEEECC--SSCEEEEEECTT
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-cEeEEEEecC--CCceeEEEECCC
Confidence 5443322222112223344444 8999999999999999999999999998652 2334444443 356888999999
Q ss_pred CCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC--------------cEEEEeCCCCc
Q 010390 332 ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY--------------TVRLWSLENSR 397 (512)
Q Consensus 332 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg--------------~i~vwd~~~~~ 397 (512)
+++|++++.|+.|++||+.+.+.. ..+. +...+.+++|+|++ .++++++.++ .+++||+.+++
T Consensus 230 ~~~l~~~~~d~~i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 230 LTYFITSSRDTNSFLVDVSTLQVL-KKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEE-EEEE-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCC
T ss_pred CCEEEEecCCceEEEEECCCCcee-eeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999999999999999887653 3343 78899999999999 8999999888 89999998887
Q ss_pred ccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCch
Q 010390 398 CSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPE 463 (512)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 463 (512)
.+..+.. + ...+. .++|+|++++++.++... .+.+|....
T Consensus 307 ~~~~~~~--------------------~----~~~v~-~~~~s~~~~~l~s~~~dg-~v~iw~~~~ 346 (369)
T 3zwl_B 307 EIGRVQG--------------------H----FGPLN-TVAISPQGTSYASGGEDG-FIRLHHFEK 346 (369)
T ss_dssp EEEEEEC--------------------C----SSCEE-EEEECTTSSEEEEEETTS-EEEEEEECH
T ss_pred chhheec--------------------c----cCcEE-EEEECCCCCEEEEEcCCC-eEEEEECcc
Confidence 6554211 1 11122 567888887777664432 344555543
No 91
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=295.96 Aligned_cols=263 Identities=13% Similarity=0.220 Sum_probs=211.9
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC--C
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE--D 120 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~ 120 (512)
...+.||.++|.+++| +|+|++||+|+.||.|+|||+.+.. ...+..+.+|.+.|++++|+|+ +
T Consensus 2 ~~~l~gH~~~V~~l~~---s~dg~~latg~~dg~I~vwd~~~~~-----------~~~~~~l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 2 VVIANAHNELIHDAVL---DYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp ------CCCCEEEECC---CSSSCCEEEEETTTEEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCTTSC
T ss_pred eeecccCcceeEEEEE---CCCCCeEEEEECCCcEEEEecCCCC-----------CccceeccCCcCceEEEEecCCCCC
Confidence 3467899999999999 9999999999999999999987432 2446778899999999999987 9
Q ss_pred CEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCC--CCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 121 TNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPT--NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
++|++|+.||.|++||+.+++ .+..+.+|...|++++|+|+ + .++++|+.||.|++||++.......
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~-------- 138 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP-------- 138 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCC--------
T ss_pred CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcce--------
Confidence 999999999999999999886 67788889999999999998 6 8999999999999999987643221
Q ss_pred ecccccccccccccccceecccccccEEEEEEee-------------cCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-------------DEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
.....|...|.+++|+| ++..+++ |+.||.|++||+++........
T Consensus 139 -----------------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s-gs~dg~I~iwd~~~~~~~~~~~--- 197 (753)
T 3jro_A 139 -----------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLE--- 197 (753)
T ss_dssp -----------------EEEECCSSCEEEEEECCCC---------CGGGCCEEE-EETTSCEEEEEEETTTTEEEEE---
T ss_pred -----------------eEeecCCCceEEEEecCcccccccccccCCCCCEEEE-EECCCeEEEEeccCCcccceee---
Confidence 13456788999999999 4677776 5589999999998765322110
Q ss_pred ccccccccccccCeeEEEeCCC---CCEEEEEecCCeEEEEEcccCCCCceEe-eeeceeceeEEEEEECCCCCEEEEec
Q 010390 264 AESSSAKETRLHGISSLSQDSN---GVFLTASCMDHRIYLYNVLQLDKGPIQH-FSGCRIESFYVKSEICPNASHILSGS 339 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~ 339 (512)
.....|...|.+++|+|+ +.+|++++.||.|++||+.......... .........+.+++|+|++++|++|+
T Consensus 198 ----~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 198 ----STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp ----EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred ----eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence 145678889999999999 8999999999999999997754322211 12222345677899999999999999
Q ss_pred CCCCEEEEecCCCC
Q 010390 340 SDGNAYVWQVNKPQ 353 (512)
Q Consensus 340 ~dg~i~iw~~~~~~ 353 (512)
.||.|++|++....
T Consensus 274 ~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 274 GDNKVTLWKENLEG 287 (753)
T ss_dssp SSSCEECCBCCSSS
T ss_pred CCCEEEEEecCCCC
Confidence 99999999998644
No 92
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.9e-33 Score=261.20 Aligned_cols=296 Identities=9% Similarity=0.096 Sum_probs=210.5
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
....+|.+.|.+|+| +|||++||+|+.+| ++|||++.... ... .+...+..+++.++++.+
T Consensus 13 ~~~~~h~~~V~~v~f---s~dg~~la~g~~~~-~~iw~~~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 13 VPENHVSNPVTDYEF---NQDQSCLILSTLKS-FEIYNVHPVAH-------------IMS--QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp ------CCCCCEEEE---CTTSSEEEEECSSE-EEEEEETTEEE-------------EEE--EECSCCCEEEECTTSSEE
T ss_pred cccccCCCceEEEEE---CCCCCEEEEEcCCE-EEEEecCCcce-------------eee--eecCCeEEEEEcCCCCEE
Confidence 355789999999999 99999999998775 78999865421 111 222357788899988887
Q ss_pred E-EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC-CCCCCccccceeeecccc
Q 010390 124 L-TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK-SSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 124 ~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~ 201 (512)
+ +++.|++|+|||+.+++++..+. +...|.+++|+++ .++++ .|+.|++||+.+. +.....
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~------------ 136 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDD------------ 136 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCC------------
T ss_pred EEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEe------------
Confidence 4 67888999999999999998887 6679999999874 34444 3789999999876 332211
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEE-eecCCeEEEEeccCccceecccCCC----ccc-ccccccccc
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA-SAVNSIVKFWDTRNLKAQITQAWPH----AES-SSAKETRLH 275 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-g~~dg~i~iwd~~~~~~~~~~~~~~----~~~-~~~~~~~~~ 275 (512)
.. ....+++++ ..++++ |+.+|.|++||++++.......... ..+ ...+..|..
T Consensus 137 ---------------~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~ 196 (355)
T 3vu4_A 137 ---------------IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN 196 (355)
T ss_dssp ---------------EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS
T ss_pred ---------------cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC
Confidence 11 233344555 566665 7789999999999765211100000 000 125678899
Q ss_pred CeeEEEeCCCCCEEEEEecCCe-EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 276 GISSLSQDSNGVFLTASCMDHR-IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
.|.+++|+|++++|++++.|++ |++||+++. ..+..+....+...+.+++|+|++++|++++.|+.|++||+.....
T Consensus 197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp CEEEEEECTTSSEEEEEETTCSEEEEEETTTC--CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 9999999999999999999998 999999763 3455555211345688999999999999999999999999976532
Q ss_pred CCc-eec---------------------cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 355 DPI-KLK---------------------SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 355 ~~~-~~~---------------------~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
... .+. .+......++|++++ .+|++++.||.+++|++..++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~-~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 275 NKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES-SLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS-EEEEEETTTTEEEEEEEEEETT
T ss_pred cccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC-CEEEEEeCCCeEEEEEEEcCCC
Confidence 111 110 112234678999999 8999999999999999977653
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.1e-33 Score=271.17 Aligned_cols=267 Identities=18% Similarity=0.285 Sum_probs=212.2
Q ss_pred eeccccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCC----------CeeeecccCcCCCEEEEEeeCCCCCeEEEE
Q 010390 101 ISDWVAHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEK----------KKCTGALMGHTGSIKSLCSHPTNSDILVSG 169 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 169 (512)
......|.+.|++++|+|+ +.+|++++.||.|++||+.+ .+.+..+.+|...|.+++|+|++..+|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3456789999999999997 67899999999999999986 567778889999999999999985599999
Q ss_pred eCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEe
Q 010390 170 SRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWD 249 (512)
Q Consensus 170 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd 249 (512)
+.||.|++||+........ .......+..|...|.+++|+|++..++++++.||.|++||
T Consensus 201 ~~dg~i~vwd~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHR--------------------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 260 (430)
T ss_dssp CTTSCEEEEETTSCCBGGG--------------------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred eCCCeEEEEeCCCCCCCCc--------------------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence 9999999999986432110 00112345578889999999996555555577899999999
Q ss_pred ccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE
Q 010390 250 TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI 328 (512)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (512)
+++...... ......|...|++++|+|++. +|++++.||.|++||++... .++..+..+ ...+.+++|
T Consensus 261 ~~~~~~~~~--------~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h--~~~v~~i~~ 329 (430)
T 2xyi_A 261 TRNNNTSKP--------SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESH--KDEIFQVQW 329 (430)
T ss_dssp TTCSCSSSC--------SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECC--SSCEEEEEE
T ss_pred CCCCCCCcc--------eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecC--CCCEEEEEE
Confidence 997631110 003457778899999999987 78899999999999997643 345555554 356889999
Q ss_pred CCCCC-EEEEecCCCCEEEEecCCCC-------------CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 329 CPNAS-HILSGSSDGNAYVWQVNKPQ-------------ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 329 s~~~~-~l~~g~~dg~i~iw~~~~~~-------------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
+|+++ +|++++.|+.|+|||+.... .......+|...|++++|+|+++.+|++++.||.|+||++.
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 99985 68999999999999998732 22345668899999999999994499999999999999998
Q ss_pred CCcc
Q 010390 395 NSRC 398 (512)
Q Consensus 395 ~~~~ 398 (512)
....
T Consensus 410 ~~~~ 413 (430)
T 2xyi_A 410 ENVY 413 (430)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6543
No 94
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-33 Score=270.23 Aligned_cols=267 Identities=12% Similarity=0.181 Sum_probs=213.0
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe------eeecccCcCCCEEEEEeeCC---CC---CeEEE
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK------CTGALMGHTGSIKSLCSHPT---NS---DILVS 168 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~---~~---~~l~s 168 (512)
...+.+|.+.|++++|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|.+++|+|+ ++ .+|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 566789999999999998 799999999999999999887 77888899999999999997 34 68999
Q ss_pred EeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc-----cccEEEEEEe----ecCCE-EEEE
Q 010390 169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA-----SMSITSVLYL----KDEVS-IATA 238 (512)
Q Consensus 169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~ 238 (512)
++.||.|++||+.++...... ....+..| ...|.+++|+ |++.. +++
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~- 143 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKV----------------------IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA- 143 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCE----------------------EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-
T ss_pred EcCCCCEEEEEccCCcccccc----------------------cceeecccccccCCCcEEEEEEeeccCCCCceEEEE-
Confidence 999999999999876531100 01233445 5899999999 99998 666
Q ss_pred eecCCeEEEEeccC------ccceecccCCCccccccc-------cccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 239 SAVNSIVKFWDTRN------LKAQITQAWPHAESSSAK-------ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 239 g~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
++.||.|++||+++ .+..... +. ..+ ..+...|.+++|+|++ +|++++.||.|++||++.
T Consensus 144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 216 (397)
T 1sq9_A 144 TDVKGTTYIWKFHPFADESNSLTLNWS--PT----LELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST 216 (397)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCC--CE----EEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred EeCCCcEEEEeCCccccccccceeecc--Cc----ceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC
Confidence 55899999999998 4433200 00 011 4467789999999999 999999999999999976
Q ss_pred CCCCceEeeee---c-eeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCCCCceecc-------------ccCC
Q 010390 306 LDKGPIQHFSG---C-RIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQADPIKLKS-------------HDGE 365 (512)
Q Consensus 306 ~~~~~~~~~~~---~-~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~-------------h~~~ 365 (512)
. ..+..+.. + .....+.+++|+|++++|++++.| +.|++||+.+.+. ...+.+ |...
T Consensus 217 ~--~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 217 L--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp T--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSC
T ss_pred C--ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-cceeccCcccccccccccccCCc
Confidence 3 34444444 2 004568899999999999999999 9999999988765 456777 9999
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 366 VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 366 v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
|.+++|+|++ .+|++++.||.|++||+.+++++..+.
T Consensus 294 v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 294 VMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 9999999999 899999999999999999988766544
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=281.17 Aligned_cols=286 Identities=17% Similarity=0.196 Sum_probs=215.4
Q ss_pred ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc-ccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCC
Q 010390 61 TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-VAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAE 138 (512)
Q Consensus 61 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~ 138 (512)
|+|++..+++++ .|+... +.+..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.
T Consensus 35 f~~~~~~~~~~~------~w~~~g--------------~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~ 94 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGNLRG--------------KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLK 94 (437)
T ss_dssp GCCCCCCCCCCC------GGGCCC--------------CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHH
T ss_pred cCCccccccccc------cccccc--------------eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECc
Confidence 488888888775 376432 336667 88999999999999 99999999999999999987
Q ss_pred C---Cee---eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC---CCCCCCCccccceeeecccccccccccc
Q 010390 139 K---KKC---TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR---CKSSPKSNCAESFVFSSAVVKGAHLLSQ 209 (512)
Q Consensus 139 ~---~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
+ +.. ...+ .|...|.+++|+|++ .+|++++.||.|++||+. .++........ .+..
T Consensus 95 ~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~------------ 159 (437)
T 3gre_A 95 EIIVGEVYSSSLTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRK------------ 159 (437)
T ss_dssp HHHTTCCCSCSEEE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEE------------
T ss_pred ccccCcccceeeec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEE------------
Confidence 6 432 2222 589999999999987 899999999999999995 33221111000 0000
Q ss_pred cccceeccc--ccccEEEEE--EeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc--cccCeeEEEeC
Q 010390 210 SKRVSRRKA--ASMSITSVL--YLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET--RLHGISSLSQD 283 (512)
Q Consensus 210 ~~~~~~~~~--~~~~v~~~~--~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~ 283 (512)
..+.. +...+.++. +++++..+++ |+.|+.|++||+++++.... +.. |...|.+++|+
T Consensus 160 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~-----------~~~~~h~~~v~~~~~s 223 (437)
T 3gre_A 160 ----INLKNFGKNEYAVRMRAFVNEEKSLLVA-LTNLSRVIIFDIRTLERLQI-----------IENSPRHGAVSSICID 223 (437)
T ss_dssp ----EEGGGGSSCCCEEEEEEEECSSCEEEEE-EETTSEEEEEETTTCCEEEE-----------EECCGGGCCEEEEEEC
T ss_pred ----EEccCcccccCceEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCeeeEE-----------EccCCCCCceEEEEEC
Confidence 01111 556788887 4567777776 55899999999998877653 333 67899999999
Q ss_pred CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC----CCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC----PNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
|++.+|++++.||.|++||++. ...+..+.. .....+.+++|+ +++.+|++|+.||.|++||+.+++.. ..+
T Consensus 224 ~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~ 299 (437)
T 3gre_A 224 EECCVLILGTTRGIIDIWDIRF--NVLIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ-YAF 299 (437)
T ss_dssp TTSCEEEEEETTSCEEEEETTT--TEEEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE-EEE
T ss_pred CCCCEEEEEcCCCeEEEEEcCC--ccEEEEEec-CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE-EEE
Confidence 9999999999999999999976 233333321 123457788554 56889999999999999999876532 222
Q ss_pred ------------------------cc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 360 ------------------------KS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 360 ------------------------~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
.+ |...|++++|+ ++ .+|++|+.||.|++||+.++++...+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 300 INSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp ESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred EcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcccceEEe
Confidence 22 67789999999 66 799999999999999999999887654
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.5e-33 Score=260.78 Aligned_cols=252 Identities=14% Similarity=0.147 Sum_probs=207.9
Q ss_pred ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---eeecccCcCCCEEEEEeeCCCCC-eEEEEeCCCcEEEE
Q 010390 103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK---CTGALMGHTGSIKSLCSHPTNSD-ILVSGSRDGSFAIW 178 (512)
Q Consensus 103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~dg~i~vw 178 (512)
...+|.+.|++++|+|++++|++++.||.|+|||+.+++ ....+..|...|.+++|+|++ . +|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEE
Confidence 345899999999999999999999999999999998876 344556899999999999987 8 99999999999999
Q ss_pred eC-CCCCCCCCccccceeeecccccccccccccccceeccc--ccccEEEEEEeecCCEEEEEeecCCeEEEEeccC---
Q 010390 179 DL-RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA--ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN--- 252 (512)
Q Consensus 179 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~--- 252 (512)
|+ .++.. ..+.. |...|.+++|+| +..+++ ++.|+.|++||+++
T Consensus 85 d~~~~~~~----------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s-~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 85 DLIGSPSF----------------------------QALTNNEANLGICRICKYG-DDKLIA-ASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp CSSSSSSE----------------------------EECBSCCCCSCEEEEEEET-TTEEEE-EETTSEEEEECHHHHTT
T ss_pred EeccCCce----------------------------EeccccCCCCceEEEEeCC-CCEEEE-EcCCCeEEEEccccccc
Confidence 99 75432 13445 888999999999 777776 55899999999986
Q ss_pred ------ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc-CCCCceEeeeeceeceeEEE
Q 010390 253 ------LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ-LDKGPIQHFSGCRIESFYVK 325 (512)
Q Consensus 253 ------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 325 (512)
.+.... . .+...|.+++|++++ +++++.|+.|++||++. .......... .....+.+
T Consensus 135 ~~~~~~~~~~~~-----------~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~i~~ 198 (342)
T 1yfq_A 135 GVIAVKNLNSNN-----------T-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEES--GLKYQIRD 198 (342)
T ss_dssp BCEEEEESCSSS-----------S-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEEC--SCSSCEEE
T ss_pred ccccccCCeeeE-----------E-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeec--CCCCceeE
Confidence 443321 2 266789999999887 99999999999999976 4332222222 22346788
Q ss_pred EEECC-CCCEEEEecCCCCEEEEecCCC-----CCCCceeccccC---------CeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390 326 SEICP-NASHILSGSSDGNAYVWQVNKP-----QADPIKLKSHDG---------EVTAVNWCPNEAGKIVTSSDDYTVRL 390 (512)
Q Consensus 326 ~~~s~-~~~~l~~g~~dg~i~iw~~~~~-----~~~~~~~~~h~~---------~v~~v~~~~~~~~~l~s~~~dg~i~v 390 (512)
++|+| +++++++++.||.|++|+++.. ......+..|.. .|++++|+|++ .+|++++.||.|++
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v 277 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISC 277 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEE
Confidence 99999 9999999999999999999876 344567777755 99999999999 89999999999999
Q ss_pred EeCCCCcccccc
Q 010390 391 WSLENSRCSSMR 402 (512)
Q Consensus 391 wd~~~~~~~~~~ 402 (512)
||+.+++++..+
T Consensus 278 wd~~~~~~~~~~ 289 (342)
T 1yfq_A 278 WNLQTRKKIKNF 289 (342)
T ss_dssp EETTTTEEEEEC
T ss_pred EcCccHhHhhhh
Confidence 999999877653
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-33 Score=256.26 Aligned_cols=252 Identities=17% Similarity=0.263 Sum_probs=210.2
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
+....+.+|.+.|++++| +++.+|++|+.||.|++||+.+++....+..|...|.+++|+|++ .+|++++.||.|++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEE
Confidence 457788999999999999 999999999999999999999999999999999999999999988 899999999999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
++...... .....+..|...|.++.| ++..+++ ++.|+.|++|| ......
T Consensus 87 ~~~~~~~~------------------------~~~~~~~~~~~~i~~~~~--~~~~l~~-~~~d~~i~~~d--~~~~~~- 136 (313)
T 3odt_A 87 PLFATSGE------------------------DPLYTLIGHQGNVCSLSF--QDGVVIS-GSWDKTAKVWK--EGSLVY- 136 (313)
T ss_dssp ETTCCTTS------------------------CC-CEECCCSSCEEEEEE--ETTEEEE-EETTSEEEEEE--TTEEEE-
T ss_pred EeeecCCC------------------------CcccchhhcccCEEEEEe--cCCEEEE-EeCCCCEEEEc--CCcEEE-
Confidence 99764321 112245578889999999 4666666 55899999999 222222
Q ss_pred ccCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 337 (512)
....|...+.++.+.+ ++.++++++.||.|++||.. .....+.. .....+.+++|+|++. +++
T Consensus 137 ----------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~-~~~~~i~~~~~~~~~~-~~~ 200 (313)
T 3odt_A 137 ----------NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND----KVIKTFSG-IHNDVVRHLAVVDDGH-FIS 200 (313)
T ss_dssp ----------EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----EEEEEECS-SCSSCEEEEEEEETTE-EEE
T ss_pred ----------ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC----ceEEEEec-cCcccEEEEEEcCCCe-EEE
Confidence 3566778899999988 89999999999999999942 23333333 1345688899999998 899
Q ss_pred ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
++.||.|++||+.+++. ...+.+|...|++++|+|++ .|++++.||.|++||+.+++++..
T Consensus 201 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~ 261 (313)
T 3odt_A 201 CSNDGLIKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQV 261 (313)
T ss_dssp EETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEE
T ss_pred ccCCCeEEEEECCchhh-hhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEE
Confidence 99999999999998765 46788899999999999998 589999999999999999876654
No 98
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-33 Score=266.83 Aligned_cols=277 Identities=13% Similarity=0.220 Sum_probs=212.3
Q ss_pred ccCCcceEEEEEecCC----CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEE
Q 010390 49 EETPPLAVSFCKTSKN----SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNI 123 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~----~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l 123 (512)
|...|.+++| +|+ +.+|++|+.||.|++||+.+++ .+..+.+|...|.+++|+| ++.+|
T Consensus 68 ~~~~v~~~~~---~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~l 131 (366)
T 3k26_A 68 ADENFYTCAW---TYDSNTSHPLLAVAGSRGIIRIINPITMQ-------------CIKHYVGHGNAINELKFHPRDPNLL 131 (366)
T ss_dssp TTCCEEEEEE---EECTTTCCEEEEEEETTCEEEEECTTTCC-------------EEEEEESCCSCEEEEEECSSCTTEE
T ss_pred CCCcEEEEEe---ccCCCCCCCEEEEecCCCEEEEEEchhce-------------EeeeecCCCCcEEEEEECCCCCCEE
Confidence 6677899988 777 7799999999999999998763 3667789999999999999 99999
Q ss_pred EEEeCCCcEEEEeCCCCeeeecc---cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 124 LTASGDQTIKIWDAEKKKCTGAL---MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++ .+|++++.||.|++||+++++........ ..+
T Consensus 132 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~ 205 (366)
T 3k26_A 132 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKES-----YDY 205 (366)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHH-----HTC
T ss_pred EEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCcccccccee-----EEe
Confidence 99999999999999999988887 7899999999999987 89999999999999999865432211100 000
Q ss_pred cccccc------ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc---cccccc
Q 010390 201 VKGAHL------LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE---SSSAKE 271 (512)
Q Consensus 201 ~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~ 271 (512)
...... ............|...|.+++|+ +..+++ ++.|+.|++||+++............. ......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD 282 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEE-EecCCEEEEEeCCCccccccccccCCcchheecccc
Confidence 000000 00011122344588999999998 566665 558999999999887653332222111 112456
Q ss_pred ccccCeeEEEeCCC--CCEEEEEecCCeEEEEEcccCCCC--ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390 272 TRLHGISSLSQDSN--GVFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW 347 (512)
Q Consensus 272 ~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 347 (512)
.|...|.+++|+|+ +++|++++.||.|++||+...... ....+..+.....+.+++|+|++++|++++.||.|++|
T Consensus 283 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 283 YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence 67788999999999 999999999999999999775432 33355555446779999999999999999999999999
Q ss_pred ecC
Q 010390 348 QVN 350 (512)
Q Consensus 348 ~~~ 350 (512)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 985
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=267.13 Aligned_cols=302 Identities=12% Similarity=0.026 Sum_probs=224.6
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCC---Cccccccccc---------------------c-------
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKL---PSFACHRENA---------------------E------- 97 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~---~~~~~~~~~~---------------------~------- 97 (512)
+..|+.+|+| ++||++|+++. ++.|++||+.+++ .......... +
T Consensus 3 ~~~p~~~v~~---s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 3 VIHPLQNLLT---SRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp EECCCCEEEE---CSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC------------------------------
T ss_pred ccccEEEEEe---cCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence 3467889998 99999777765 7899999998776 2111000000 0
Q ss_pred -------------ccceeccccCCCcEEEEEEecCCCEE-EEEeCCCcEEEEeCC--CCeeeeccc--CcCCCEEEEEee
Q 010390 98 -------------KARISDWVAHQNAIFDLCWIKEDTNI-LTASGDQTIKIWDAE--KKKCTGALM--GHTGSIKSLCSH 159 (512)
Q Consensus 98 -------------~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~h~~~v~~l~~~ 159 (512)
........+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|.+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 158 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA 158 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence 00011123567789999999999996 899999999999999 888888776 567899999999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec---CCEEE
Q 010390 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD---EVSIA 236 (512)
Q Consensus 160 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~ 236 (512)
|++ .+|++++.||.|++|++.+...... ....+.+|...|.+++|+|+ +..++
T Consensus 159 p~~-~~l~~~~~~g~v~~~~~~~~~~~~~-----------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 214 (450)
T 2vdu_B 159 EDD-TTVIIADKFGDVYSIDINSIPEEKF-----------------------TQEPILGHVSMLTDVHLIKDSDGHQFII 214 (450)
T ss_dssp TTS-SEEEEEETTSEEEEEETTSCCCSSC-----------------------CCCCSEECSSCEEEEEEEECTTSCEEEE
T ss_pred CCC-CEEEEEeCCCcEEEEecCCcccccc-----------------------cceeeecccCceEEEEEcCCCCCCcEEE
Confidence 988 8999999999999999987654320 11134567889999999999 77777
Q ss_pred EEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee
Q 010390 237 TASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG 316 (512)
Q Consensus 237 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 316 (512)
+ |+.|+.|++||++++..... ...+|...|.+++|+ ++.+|++++.|+.|++||+.+.. .+..+..
T Consensus 215 s-~~~d~~i~vwd~~~~~~~~~----------~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~ 280 (450)
T 2vdu_B 215 T-SDRDEHIKISHYPQCFIVDK----------WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK--NLSTFDY 280 (450)
T ss_dssp E-EETTSCEEEEEESCTTCEEE----------ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC--EEEEEEC
T ss_pred E-EcCCCcEEEEECCCCceeee----------eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc--Eeeeecc
Confidence 6 55899999999998776543 144677889999999 99999999999999999997643 3333332
Q ss_pred c-----------------------eeceeEEEEEECCCCCEEEEec-CCCCEEEEec--CCCC--CCCceeccccCCeEE
Q 010390 317 C-----------------------RIESFYVKSEICPNASHILSGS-SDGNAYVWQV--NKPQ--ADPIKLKSHDGEVTA 368 (512)
Q Consensus 317 ~-----------------------~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~--~~~~--~~~~~~~~h~~~v~~ 368 (512)
+ .....+..++|+|++++|++++ .|+.|++|++ .... .....+..| +.|.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~ 359 (450)
T 2vdu_B 281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVIS 359 (450)
T ss_dssp HHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEE
T ss_pred hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEE
Confidence 1 1224577899999999999988 8999999999 4331 223456666 88999
Q ss_pred EEeCCCCCCeEEEEeC-------CCcEEEEeCCC
Q 010390 369 VNWCPNEAGKIVTSSD-------DYTVRLWSLEN 395 (512)
Q Consensus 369 v~~~~~~~~~l~s~~~-------dg~i~vwd~~~ 395 (512)
++|+|++ ++++.+. +..|.+|.+..
T Consensus 360 ~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 360 LSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEETTE--EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEecCCc--EEEEEecccCCCCCCcceEEEEEEc
Confidence 9999954 5555443 55688887654
No 100
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-34 Score=273.92 Aligned_cols=253 Identities=13% Similarity=0.181 Sum_probs=198.3
Q ss_pred cccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390 104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 104 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 181 (512)
++.|.+.|++++|+|++++|++|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcC
Confidence 3456789999999999999999999999999999988 7888999999999999999988 899999999999999998
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~ 261 (512)
++... ........|...|.+++|+|++..++++ +.|+.|++||+++.+......
T Consensus 86 ~~~~~------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~- 139 (377)
T 3dwl_C 86 PDGTW------------------------KQTLVLLRLNRAATFVRWSPNEDKFAVG-SGARVISVCYFEQENDWWVSK- 139 (377)
T ss_dssp ---CC------------------------CCEEECCCCSSCEEEEECCTTSSCCEEE-ESSSCEEECCC-----CCCCE-
T ss_pred CCCce------------------------eeeeEecccCCceEEEEECCCCCEEEEE-ecCCeEEEEEECCcccceeee-
Confidence 76511 1122445688899999999999988874 479999999999876311000
Q ss_pred CCccccccccc-cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC----------------CCceEeeeeceeceeEE
Q 010390 262 PHAESSSAKET-RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD----------------KGPIQHFSGCRIESFYV 324 (512)
Q Consensus 262 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~~~~ 324 (512)
.... |...|.+++|+|++++|++++.|+.|++||+.... ...+..+ .+...+.
T Consensus 140 -------~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~ 209 (377)
T 3dwl_C 140 -------HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVH 209 (377)
T ss_dssp -------EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEE
T ss_pred -------EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEE
Confidence 2344 77899999999999999999999999999985322 1112222 3345688
Q ss_pred EEEECCCCCEEEEecCCCCEEEEecCCCCCC---CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 325 KSEICPNASHILSGSSDGNAYVWQVNKPQAD---PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 325 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
+++|+|++++|++++.||.|++||+.+++.. ...+.+|...|.+++|+|++ .+|++++.|+.+ +|+...
T Consensus 210 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 210 AVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCC
Confidence 9999999999999999999999999987752 46788999999999999999 788888877766 666653
No 101
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=270.03 Aligned_cols=257 Identities=14% Similarity=0.186 Sum_probs=205.4
Q ss_pred cccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEeC----CCCe------eeecccC----------cCCCEEEEEeeCCC
Q 010390 104 WVAHQNAIFDLCWIKEDT-NILTASGDQTIKIWDA----EKKK------CTGALMG----------HTGSIKSLCSHPTN 162 (512)
Q Consensus 104 ~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~----~~~~------~~~~~~~----------h~~~v~~l~~~~~~ 162 (512)
...|.+.|++++|+|+++ +|++|+.||.|++||+ .+++ ....+.. |.+.|++++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345679999999999999 9999999999999999 8887 3444433 67799999999987
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC
Q 010390 163 SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN 242 (512)
Q Consensus 163 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d 242 (512)
.+|++++.||.|++||.. +. ....+..|...|.+++|+|++..+++++ .|
T Consensus 121 -~~l~~~~~dg~i~i~~~~-~~---------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 170 (425)
T 1r5m_A 121 -NSIVTGVENGELRLWNKT-GA---------------------------LLNVLNFHRAPIVSVKWNKDGTHIISMD-VE 170 (425)
T ss_dssp -SEEEEEETTSCEEEEETT-SC---------------------------EEEEECCCCSCEEEEEECTTSSEEEEEE-TT
T ss_pred -CEEEEEeCCCeEEEEeCC-CC---------------------------eeeeccCCCccEEEEEECCCCCEEEEEe-cC
Confidence 899999999999999932 21 1224556888999999999999888754 79
Q ss_pred CeEEEEeccCccceecccCCCc---------------------------------------------cccccccccccCe
Q 010390 243 SIVKFWDTRNLKAQITQAWPHA---------------------------------------------ESSSAKETRLHGI 277 (512)
Q Consensus 243 g~i~iwd~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~i 277 (512)
+.|++||+.+++.......... ........|...|
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i 250 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI 250 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce
Confidence 9999999987765543322111 1111344677889
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCc
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI 357 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~ 357 (512)
.+++|+|++++|++++.||.|++||+.... ....+..+ ...+.+++|+|++ ++++++.|+.|++||+.+.+. ..
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~ 324 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGN--SQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL-LA 324 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSBS--CSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE-EE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCc--cceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE-eE
Confidence 999999999999999999999999987643 34444433 3568889999999 999999999999999988765 46
Q ss_pred eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
.+..|...|.+++|+|++ .+|++++.||.|++||+.+++
T Consensus 325 ~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 325 LSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHH
T ss_pred ecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCc
Confidence 777899999999999999 899999999999999998776
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=265.55 Aligned_cols=261 Identities=16% Similarity=0.220 Sum_probs=201.3
Q ss_pred eeccccCCCcEEEEEEecCCCEEE-EEeC---CCcEEEEeCCCCeeeecc-cCcCCCEEEEEeeCCC--CCeEEEEeCCC
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNIL-TASG---DQTIKIWDAEKKKCTGAL-MGHTGSIKSLCSHPTN--SDILVSGSRDG 173 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~-s~~~---dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~--~~~l~s~~~dg 173 (512)
...+.+|.+.|++++|+|++..++ +|+. ||.|+|||+.+++..... .+|...|.+++|+|++ +.+|++++.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 344578999999999999997665 5655 999999999988765443 3689999999999983 48999999999
Q ss_pred cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEE------eecCCEEEEEeecCCeEEE
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY------LKDEVSIATASAVNSIVKF 247 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~g~~dg~i~i 247 (512)
.|++||+.+++. ....+..|...|.++.| +|++..+++ ++.||.|++
T Consensus 91 ~i~iwd~~~~~~--------------------------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~-~~~d~~i~v 143 (357)
T 3i2n_A 91 NLHIWNLEAPEM--------------------------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT-GSRDGTVKV 143 (357)
T ss_dssp CEEEECTTSCSS--------------------------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEE-EETTSCEEE
T ss_pred eEEEEeCCCCCc--------------------------cEEEEEecccceEEEeeccccccCCCccEEEE-EeCCCeEEE
Confidence 999999987641 11245578889999965 578888877 558999999
Q ss_pred EeccCccceecccCCCccccccccccccCeeEEE----eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeE
Q 010390 248 WDTRNLKAQITQAWPHAESSSAKETRLHGISSLS----QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFY 323 (512)
Q Consensus 248 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 323 (512)
||+++..........+ .......+.+++ |++++.+|++++.||.|++||++.... .... .....+
T Consensus 144 wd~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~--~~~~~v 212 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPV------QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL---RWET--NIKNGV 212 (357)
T ss_dssp ECTTSCSSCSEEECCC------TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE---EEEE--ECSSCE
T ss_pred EeCCCCCCcceecccc------CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce---eeec--CCCCce
Confidence 9999876322211110 111133688888 789999999999999999999976432 2222 224568
Q ss_pred EEEEECC---CCCEEEEecCCCCEEEEecCCCCCCCceec-----cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 324 VKSEICP---NASHILSGSSDGNAYVWQVNKPQADPIKLK-----SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 324 ~~~~~s~---~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
.+++|+| ++++|++|+.||.|++||+.+.+.. ..+. +|...|++++|+|++..+|++++.||.|++||+..
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 8999999 9999999999999999999876653 3333 89999999999999833899999999999999998
Q ss_pred Ccccc
Q 010390 396 SRCSS 400 (512)
Q Consensus 396 ~~~~~ 400 (512)
+....
T Consensus 292 ~~~~~ 296 (357)
T 3i2n_A 292 PIQRS 296 (357)
T ss_dssp CSCC-
T ss_pred Ccccc
Confidence 76554
No 103
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.3e-33 Score=266.02 Aligned_cols=252 Identities=16% Similarity=0.170 Sum_probs=209.0
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 182 (512)
..|.++|++++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++ .+|++++.||.|++||+++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEET
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCC
Confidence 4589999999999999999999999999999999987 888899999999999999987 8999999999999999975
Q ss_pred CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP 262 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~ 262 (512)
++... ......|...|.+++|+|++..+++++ .|+.|++||++.........
T Consensus 84 ~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~-- 135 (372)
T 1k8k_C 84 RTWKP-------------------------TLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCK-- 135 (372)
T ss_dssp TEEEE-------------------------EEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEE--
T ss_pred Ceeee-------------------------eEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeee--
Confidence 43111 112345778999999999999888754 79999999999876321110
Q ss_pred CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC----------------CCCceEeeeeceeceeEEEE
Q 010390 263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL----------------DKGPIQHFSGCRIESFYVKS 326 (512)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~~~~~~~~~~ 326 (512)
.....|...|.+++|+|++.+|++++.||.|++||++.. ....+..+..+ ...+.++
T Consensus 136 -----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~ 208 (372)
T 1k8k_C 136 -----HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGV 208 (372)
T ss_dssp -----EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEE
T ss_pred -----eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEE
Confidence 023456788999999999999999999999999997521 12333444433 4568899
Q ss_pred EECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 327 EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
+|+|++++|++++.|+.|++||+.+++. ...+..|...|.+++|+|++ .+|+++ .|+.|++|++.+
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEET
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCce-eEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccC
Confidence 9999999999999999999999998775 46788899999999999998 677766 999999999988
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=9e-33 Score=266.71 Aligned_cols=266 Identities=20% Similarity=0.289 Sum_probs=211.5
Q ss_pred eecCCccCCcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC-
Q 010390 44 VEHHGEETPPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT- 121 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~- 121 (512)
....+|.+.|++++| +|+ +.+||+|+.||.|+|||+........ .......+..+.+|...|++++|+|++.
T Consensus 122 ~~~~~h~~~v~~l~~---~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 122 EIKINHEGEVNRARY---MPQNACVIATKTPSSDVLVFDYTKHPSKPE---PSGECQPDLRLRGHQKEGYGLSWNPNLNG 195 (430)
T ss_dssp EEEEEESSCCSEEEE---ETTEEEEEEEECSSSCEEEEEGGGSCSSCC---TTCCCCCSEEEECCSSCCCCEEECTTSTT
T ss_pred EEEEcCCCcEEEEEE---CCCCCcEEEEECCCCcEEEEECCCcccccC---ccccCCCcEEecCCCCCeEEEEeCCCCCC
Confidence 556789999999999 886 78999999999999999976311000 0011244677889999999999999988
Q ss_pred EEEEEeCCCcEEEEeCCCCee-------eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 122 NILTASGDQTIKIWDAEKKKC-------TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
+|++|+.||.|++||+.++.. ...+.+|...|.+++|+|++..+|++++.||.|++||+++....
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-------- 267 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-------- 267 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--------
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--------
Confidence 999999999999999987432 45567899999999999976699999999999999999865311
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL 274 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
........|...|++++|+|++..++++|+.||.|++||+++...... .+..|.
T Consensus 268 ----------------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~----------~~~~h~ 321 (430)
T 2xyi_A 268 ----------------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----------SFESHK 321 (430)
T ss_dssp ----------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE----------EEECCS
T ss_pred ----------------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE----------EeecCC
Confidence 112234477889999999999987776688999999999997543222 456678
Q ss_pred cCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCC------------CceEeeeeceeceeEEEEEECCCCC-EEEEecC
Q 010390 275 HGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDK------------GPIQHFSGCRIESFYVKSEICPNAS-HILSGSS 340 (512)
Q Consensus 275 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~ 340 (512)
..|.+++|+|++. +|++++.||.|++||+..... ..+..+.++ ...+.+++|+|+++ +|++++.
T Consensus 322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEET
T ss_pred CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEEC
Confidence 8999999999985 799999999999999976332 223333333 45688999999999 8999999
Q ss_pred CCCEEEEecCC
Q 010390 341 DGNAYVWQVNK 351 (512)
Q Consensus 341 dg~i~iw~~~~ 351 (512)
||.|+||++..
T Consensus 400 dg~i~iw~~~~ 410 (430)
T 2xyi_A 400 DNIMQVWQMAE 410 (430)
T ss_dssp TSEEEEEEECH
T ss_pred CCCEEEeEccc
Confidence 99999999864
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.9e-32 Score=261.62 Aligned_cols=265 Identities=13% Similarity=0.212 Sum_probs=211.2
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
..+.+|.+.|++|+| +|+|++||+|+.||.|+|||++++. .+..+.+|...|.+++|+ +..|
T Consensus 141 ~~~~~~~~~V~sv~f---spdg~~lasgs~Dg~v~iWd~~~~~-------------~~~~~~~h~~~v~~~s~~--~~~l 202 (420)
T 4gga_A 141 LQMEQPGEYISSVAW---IKEGNYLAVGTSSAEVQLWDVQQQK-------------RLRNMTSHSARVGSLSWN--SYIL 202 (420)
T ss_dssp EECCSTTCCEEEEEE---CTTSSEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEE--TTEE
T ss_pred EEecCCCCcEEEEEE---CCCCCEEEEEECCCeEEEEEcCCCc-------------EEEEEeCCCCceEEEeeC--CCEE
Confidence 456688999999999 9999999999999999999998763 377889999999998874 6799
Q ss_pred EEEeCCCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 124 LTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
++|+.|+.+++||.... ..+..+.+|...+..+.|+|++ .++++++.|+.+++|+...++....
T Consensus 203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~-------------- 267 (420)
T 4gga_A 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWV-------------- 267 (420)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSC--------------
T ss_pred EEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccce--------------
Confidence 99999999999998764 4567788999999999999988 8999999999999999987653321
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEE--eecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA--SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
.......|...|.+++|+|.+..++++ |+.|+.|++||+.++..... ......+.++
T Consensus 268 ---------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~------------~~~~~~v~~~ 326 (420)
T 4gga_A 268 ---------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA------------VDAHSQVCSI 326 (420)
T ss_dssp ---------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE------------EECSSCEEEE
T ss_pred ---------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee------------eccccceeee
Confidence 122445678899999999987766543 45799999999999876653 2234568999
Q ss_pred EeCCCCCEEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 281 SQDSNGVFLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 281 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
.|++++..+++++ .|+.|++||+.+ ...+..+.+|. ..|.+++|+|+|++|++|+.|++|+|||+..... ...
T Consensus 327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~--~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~-~~~ 401 (420)
T 4gga_A 327 LWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWRCFELDP-ARR 401 (420)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC-C--
T ss_pred eecCCCCeEEEEEecCCCEEEEEECCC--CcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc-cch
Confidence 9999999888765 789999999876 34566777764 5689999999999999999999999999976544 233
Q ss_pred eccccCCeE
Q 010390 359 LKSHDGEVT 367 (512)
Q Consensus 359 ~~~h~~~v~ 367 (512)
...+...+.
T Consensus 402 ~~~~~~~~~ 410 (420)
T 4gga_A 402 REREKASAA 410 (420)
T ss_dssp ---------
T ss_pred hhhccCCcc
Confidence 344444333
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-33 Score=287.47 Aligned_cols=258 Identities=19% Similarity=0.232 Sum_probs=210.0
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC--CCeeeecccCcCCCEEEEEeeCC--CCCeEEEEeCCCcEE
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAE--KKKCTGALMGHTGSIKSLCSHPT--NSDILVSGSRDGSFA 176 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~ 176 (512)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+|+ + ++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEE
Confidence 34568999999999999999999999999999999998 55778889999999999999987 5 8999999999999
Q ss_pred EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCcc
Q 010390 177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
+||+.++.. ........|...|.+++|+|+ +..+++ |+.||.|++||+++..
T Consensus 81 vwd~~~~~~-------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~s-gs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 81 IWKEENGRW-------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENG 134 (753)
T ss_dssp EEEEETTEE-------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECCSSS
T ss_pred EEECCCCcc-------------------------cccccccCCCCCeEEEEECCCCCCCEEEE-EeCCCcEEEEEeecCC
Confidence 999876421 122345578889999999999 777777 5589999999999874
Q ss_pred ceecccCCCccccccccccccCeeEEEeCC-------------CCCEEEEEecCCeEEEEEcccCCCC--ceEeeeecee
Q 010390 255 AQITQAWPHAESSSAKETRLHGISSLSQDS-------------NGVFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRI 319 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~ 319 (512)
..... ....|...|.+++|+| ++.++++++.||.|++||++..... ....+.+|
T Consensus 135 ~~~~~---------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-- 203 (753)
T 3jro_A 135 TTSPI---------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-- 203 (753)
T ss_dssp CCCCE---------EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC--
T ss_pred Cccee---------EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC--
Confidence 43222 3567778899999999 5899999999999999999765432 22333333
Q ss_pred ceeEEEEEECCC---CCEEEEecCCCCEEEEecCCCCC----CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 320 ESFYVKSEICPN---ASHILSGSSDGNAYVWQVNKPQA----DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 320 ~~~~~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
...+.+++|+|+ +++|++|+.||.|++||+.++.. .......|.+.|++++|+|++ .+|++++.||.|++|+
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCB
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEe
Confidence 456889999999 89999999999999999988642 223345688999999999999 8999999999999999
Q ss_pred CCCCc
Q 010390 393 LENSR 397 (512)
Q Consensus 393 ~~~~~ 397 (512)
+..+.
T Consensus 283 ~~~~~ 287 (753)
T 3jro_A 283 ENLEG 287 (753)
T ss_dssp CCSSS
T ss_pred cCCCC
Confidence 98654
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.3e-33 Score=267.32 Aligned_cols=280 Identities=14% Similarity=0.102 Sum_probs=187.8
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--------CCCEEEEEeCCCcEE
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--------EDTNILTASGDQTIK 133 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--------~~~~l~s~~~dg~i~ 133 (512)
++++.+||+|+.|++|+|||.+.+.. .....+..+.+|.+.|++++|+| |+++|++|+.|++|+
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~--------~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETI--------ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEE--------EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcc--------ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 77788999999999999999887643 12234667899999999999998 789999999999999
Q ss_pred EEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccc
Q 010390 134 IWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRV 213 (512)
Q Consensus 134 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (512)
|||+.++.++..+..|...|.+++|+|++.++|++++.|++|++||+++++.................. .........
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~ 247 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT--LNTLPLVNT 247 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE--EESGGGC--
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe--cccccceee
Confidence 999999888888888999999999999886789999999999999999876544322111000000000 000001111
Q ss_pred eecccccccEEEEEEe-ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390 214 SRRKAASMSITSVLYL-KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS 292 (512)
Q Consensus 214 ~~~~~~~~~v~~~~~~-~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (512)
....+|...+.++.|. +++..+++ ++.|+.+++||+....... .+..+...+..+.+.++.+.+...
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s-~s~d~~i~vwd~~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILA-MCKSGAWLRWNLFANNDYN-----------EISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEE-ECTTSEEEEEEC------------------------------CCSCSEEEECSS
T ss_pred eecccccccceeeeeecCCCCEEEE-EeCCCCEEEEECccCCCCc-----------eEeeecCccccEEEcccccccccc
Confidence 2334677889999997 68888776 5589999999998765443 233444555566666553322111
Q ss_pred ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC--CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEE
Q 010390 293 CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP--NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVN 370 (512)
Q Consensus 293 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~ 370 (512)
. ......+++ ++.++++|+.||.|++||+.+++. ...+.+|..+|++++
T Consensus 316 ~----------------------------~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~sva 366 (393)
T 4gq1_A 316 P----------------------------SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFC 366 (393)
T ss_dssp C----------------------------CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEE
T ss_pred C----------------------------cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEE
Confidence 0 011123333 455778899999999999998876 456778889999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 371 WCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 371 ~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
|+||| ++||+++.|| +.+|.+.
T Consensus 367 fspdG-~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 367 WHQDG-SHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ECTTS-SEEEEEESSE-EEEEEEG
T ss_pred EcCCC-CEEEEEeCCC-eEEEEEe
Confidence 99999 8999999877 6566553
No 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-33 Score=258.84 Aligned_cols=272 Identities=10% Similarity=0.098 Sum_probs=203.1
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC---
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAE--- 138 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~--- 138 (512)
.+++++||+|+.||.|++||++++.. +..+. ...|.++.|+|+ +++++.|++|++|+..
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~-------------~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~ 106 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKT-------------ITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQI 106 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSC-------------EEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcE-------------EEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCce
Confidence 46889999999999999999987654 22232 456778888887 9999999999999765
Q ss_pred ------CCeeeeccc-CcCCCEEEEEeeC--CCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390 139 ------KKKCTGALM-GHTGSIKSLCSHP--TNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ 209 (512)
Q Consensus 139 ------~~~~~~~~~-~h~~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
+++.+..+. +|.+.|.+++|+| ++ .+|++++.||.|++||+++++....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~--------------------- 164 (343)
T 3lrv_A 107 TILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIV--------------------- 164 (343)
T ss_dssp EEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEE---------------------
T ss_pred EEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEE---------------------
Confidence 444344443 6778999999999 87 8999999999999999987653110
Q ss_pred cccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc-cccCeeEEEeCCCCCE
Q 010390 210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET-RLHGISSLSQDSNGVF 288 (512)
Q Consensus 210 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 288 (512)
....+...+.+++|+|++..+++ |+.||.|++||+++++.... .+.. |...|.+++|+|++.+
T Consensus 165 -----~~~~~~~~i~~~~~~pdg~~las-g~~dg~i~iwd~~~~~~~~~----------~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 165 -----HSAKSDVEYSSGVLHKDSLLLAL-YSPDGILDVYNLSSPDQASS----------RFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp -----ECCCSSCCCCEEEECTTSCEEEE-ECTTSCEEEEESSCTTSCCE----------ECCCCTTSCEEEEEECTTSSE
T ss_pred -----EecCCCCceEEEEECCCCCEEEE-EcCCCEEEEEECCCCCCCcc----------EEeccCCCCEEEEEEeCCCCE
Confidence 11234457999999999998887 55899999999998876521 2344 7789999999999999
Q ss_pred EEEEecCCeEEEEEcccCCCCc-eEeeeeceeceeEEEEEECCCCCEEEEecC-CCCEEEEecCCCCCCCceeccccCCe
Q 010390 289 LTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEICPNASHILSGSS-DGNAYVWQVNKPQADPIKLKSHDGEV 366 (512)
Q Consensus 289 l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~h~~~v 366 (512)
|++++ ++.|++||++...... +..+..+.......+++|+|++++|++++. |+.|++|++.+..... .. .++
T Consensus 229 l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~-~~----~~~ 302 (343)
T 3lrv_A 229 MVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNW-TK----DEE 302 (343)
T ss_dssp EEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSE-EE----EEE
T ss_pred EEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccce-Ee----cCc
Confidence 99999 5599999998754321 111111111111146999999999999888 9999999997665421 22 578
Q ss_pred EEEEeCC---CCCCeEEEEeCCCcEEEEeCCCC
Q 010390 367 TAVNWCP---NEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 367 ~~v~~~~---~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
..++|.+ +. ..+++++.||.+.++-....
T Consensus 303 ~~~~~~~~~~~~-~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 303 SALCLQSDTADF-TDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EECCC----CCC-CEEEEEEETTEEEEEEECSS
T ss_pred eeEecCcccccc-ceeEEEecCCceEEEEecCC
Confidence 8899998 77 78999999999998865443
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.3e-32 Score=258.36 Aligned_cols=255 Identities=14% Similarity=0.208 Sum_probs=198.5
Q ss_pred EEEEEEecCCCEEE-EEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390 111 IFDLCWIKEDTNIL-TASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS 185 (512)
Q Consensus 111 V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 185 (512)
...++++|+...++ +++.||.|+||++... +.+..+.+|.+.|++++|+|.++.+|++|+.||.|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34578888765544 5788999999999654 234567889999999999994349999999999999999987643
Q ss_pred CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390 186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 265 (512)
.... ......+.+|...|.+++|+|++..++++++.|+.|++||+++++.....
T Consensus 117 ~~~~--------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------ 170 (402)
T 2aq5_A 117 VLPL--------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL------ 170 (402)
T ss_dssp SSCB--------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE------
T ss_pred cccc--------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE------
Confidence 3211 12233566889999999999998544444668999999999988765532
Q ss_pred ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee-eeceeceeEEEEEECCCCCEEEEe---cCC
Q 010390 266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF-SGCRIESFYVKSEICPNASHILSG---SSD 341 (512)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g---~~d 341 (512)
....|...|.+++|+|++.+|++++.||.|++||++.. ..+..+ ..+. ...+.+++|+|++++|++| +.|
T Consensus 171 ---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 171 ---GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHE-GTRPVHAVFVSEGKILTTGFSRMSE 244 (402)
T ss_dssp ---CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECSSC-SSSCCEEEECSTTEEEEEEECTTCC
T ss_pred ---ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC--ceeeeeccCCC-CCcceEEEEcCCCcEEEEeccCCCC
Confidence 01567788999999999999999999999999999763 234444 2332 2236679999999999999 889
Q ss_pred CCEEEEecCCCCCCCcee-ccccCCeEEEEeCCCCCCeEE-EEeCCCcEEEEeCCCCcc
Q 010390 342 GNAYVWQVNKPQADPIKL-KSHDGEVTAVNWCPNEAGKIV-TSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 342 g~i~iw~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~ 398 (512)
+.|++||+.+........ ..|...|.+++|+|++ .+|+ +++.||.|++||+.+++.
T Consensus 245 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTT
T ss_pred ceEEEEcCccccCCceEEeccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCc
Confidence 999999999876644333 3577889999999999 6665 566899999999998873
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-31 Score=251.71 Aligned_cols=260 Identities=13% Similarity=0.145 Sum_probs=193.8
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEe-----------eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVS-----------DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIF 112 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg-----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 112 (512)
..+.+|.+.|.++++ +++.+++| +.|+.+++|++......... ...........+...+.
T Consensus 67 ~~l~~~~~~v~s~~~-----~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 137 (365)
T 4h5i_A 67 FALEDNDDSPTAIDA-----SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEF----LTSVDFDASTNADDYTK 137 (365)
T ss_dssp EECCTTSCCCCEEEE-----ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE----EEEECSSCCCCTTCCEE
T ss_pred EEccCCCCceEEEEe-----CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEE----eeeeceeecCCcccCEE
Confidence 457789999998877 45666655 45778999998765331111 00111222344566799
Q ss_pred EEEEecCCCEEEEE--eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390 113 DLCWIKEDTNILTA--SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC 190 (512)
Q Consensus 113 ~l~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 190 (512)
+++|+|||++|+++ +.|++|+|||+.+++++..+. |...|.+++|+|++ .++++++.| .+++|+..++....
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~--- 211 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIA--- 211 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEE---
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCccee---
Confidence 99999999998754 478999999999999988886 77889999999998 889998855 56667665543211
Q ss_pred ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC----eEEEEeccCccceecccCCCccc
Q 010390 191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS----IVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
......|...+.+++|+|++..+++++. |+ .+++|++..........
T Consensus 212 ----------------------~~~~~~~~~~v~~v~fspdg~~l~~~s~-d~~~~~~i~~~~~~~~~~~~~~~------ 262 (365)
T 4h5i_A 212 ----------------------RKTDFDKNWSLSKINFIADDTVLIAASL-KKGKGIVLTKISIKSGNTSVLRS------ 262 (365)
T ss_dssp ----------------------EECCCCTTEEEEEEEEEETTEEEEEEEE-SSSCCEEEEEEEEETTEEEEEEE------
T ss_pred ----------------------eeecCCCCCCEEEEEEcCCCCEEEEEec-CCcceeEEeecccccceecceee------
Confidence 1123456778999999999999998664 54 68889887655432110
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee-eeceeceeEEEEEECCCCCEEEEecCCCCEE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF-SGCRIESFYVKSEICPNASHILSGSSDGNAY 345 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 345 (512)
.....|...|++++|+|+|++|++|+.|+.|++||+.+. ..+..+ .+| ...|++++|+|||++||+|+.|++|+
T Consensus 263 -~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~--~~~~~~~~gH--~~~V~~v~fSpdg~~laS~S~D~tvr 337 (365)
T 4h5i_A 263 -KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL--SMSKIFKQAH--SFAITEVTISPDSTYVASVSAANTIH 337 (365)
T ss_dssp -EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT--EEEEEETTSS--SSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred -eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC--cEEEEecCcc--cCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 035667788999999999999999999999999998753 334433 344 45689999999999999999999999
Q ss_pred EEecCCC
Q 010390 346 VWQVNKP 352 (512)
Q Consensus 346 iw~~~~~ 352 (512)
||++...
T Consensus 338 vw~ip~~ 344 (365)
T 4h5i_A 338 IIKLPLN 344 (365)
T ss_dssp EEECCTT
T ss_pred EEEcCCC
Confidence 9999654
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=253.08 Aligned_cols=256 Identities=15% Similarity=0.246 Sum_probs=198.0
Q ss_pred cceeccccCCCcEEEEEEecC---CCEEEEEeCCCcEEEEeCCC-Ceee-ecccCcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390 99 ARISDWVAHQNAIFDLCWIKE---DTNILTASGDQTIKIWDAEK-KKCT-GALMGHTGSIKSLCSHPTNSDILVSGSRDG 173 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 173 (512)
..+..+.+|.+.|++++|+|+ +++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++ .+|++++.||
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg 108 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDK 108 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCC
Confidence 346778999999999999998 69999999999999999987 5444 7788899999999999987 8999999999
Q ss_pred cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEE--eecCCEEEEEeecCCeEEEEecc
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY--LKDEVSIATASAVNSIVKFWDTR 251 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~g~~dg~i~iwd~~ 251 (512)
.|++||+++++.. ....|...|.+++| ++++..+++ ++.||.|++||++
T Consensus 109 ~v~iwd~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 109 TAKMWDLSSNQAI----------------------------QIAQHDAPVKTIHWIKAPNYSCVMT-GSWDKTLKFWDTR 159 (368)
T ss_dssp EEEEEETTTTEEE----------------------------EEEECSSCEEEEEEEECSSCEEEEE-EETTSEEEEECSS
T ss_pred cEEEEEcCCCCce----------------------------eeccccCceEEEEEEeCCCCCEEEE-ccCCCcEEEEECC
Confidence 9999999865321 23467889999999 778877777 5589999999999
Q ss_pred CccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC
Q 010390 252 NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN 331 (512)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 331 (512)
+++..... .. ...+.++.+. ...+++++.++.+.+|++.............. .....++++.++
T Consensus 160 ~~~~~~~~-----------~~-~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 223 (368)
T 3mmy_A 160 SSNPMMVL-----------QL-PERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPL--KHQHRCVAIFKD 223 (368)
T ss_dssp CSSCSEEE-----------EC-SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSC--SSCEEEEEEEEC
T ss_pred CCcEEEEE-----------ec-CCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccc--cCCCceEEEccc
Confidence 87765432 11 2245555555 45888999999999999965432111111111 122333444444
Q ss_pred CCE----EEEecCCCCEEEEecCCCC--CCCceeccccC------------CeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 332 ASH----ILSGSSDGNAYVWQVNKPQ--ADPIKLKSHDG------------EVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 332 ~~~----l~~g~~dg~i~iw~~~~~~--~~~~~~~~h~~------------~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
... +++++.||.|++|++.... .....+.+|.. .|++++|+|++ .+|++++.||.|++||+
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDK 302 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEET
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEEC
Confidence 433 9999999999999998763 22456677765 79999999999 89999999999999999
Q ss_pred CCCccccc
Q 010390 394 ENSRCSSM 401 (512)
Q Consensus 394 ~~~~~~~~ 401 (512)
.+++++..
T Consensus 303 ~~~~~~~~ 310 (368)
T 3mmy_A 303 DARTKLKT 310 (368)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEE
Confidence 99887664
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=260.96 Aligned_cols=249 Identities=12% Similarity=0.123 Sum_probs=202.0
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC-----cEEEEEEecCCCE
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN-----AIFDLCWIKEDTN 122 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~s~~~~~ 122 (512)
+|.+.|.+|+| ||||++||+++.||.|+|||.++ .+..+. |.. .|.+++|||||++
T Consensus 83 ~~~~~V~~vaw---SPdG~~LAs~s~dg~V~iwd~~~---------------~l~~l~-~~~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 83 QPVCYPRVCKP---SPIDDWMAVLSNNGNVSVFKDNK---------------MLTNLD-SKGNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp SCSCCEEEEEE---CSSSSCEEEEETTSCEEEEETTE---------------EEEECC-CSSCSTTTCEEEEEECSSSSC
T ss_pred CCCCcEEEEEE---CCCCCEEEEEeCCCcEEEEeCCc---------------eeeecc-CCCccccccEEEEEEcCCCCE
Confidence 45888999999 99999999999999999999643 244555 554 5999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCee-------eecc----cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 123 ILTASGDQTIKIWDAEKKKC-------TGAL----MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~-------~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
|++|+.||+|+|||+.+++. +.++ .+|...|.+++|+|++ +++++.|++|++||+..+....
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~---- 216 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQP---- 216 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCC----
T ss_pred EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcccc----
Confidence 99999999999999998753 4555 6788899999999976 8889999999999997654211
Q ss_pred cceeeecccccccccccccccceec-ccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRR-KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
....+ ..|...|.+++|+ +..+++++ ++.|++||+.+.+... ..
T Consensus 217 --------------------~~~tL~~~h~~~V~svaFs--g~~LASa~--~~tIkLWd~~~~~~~~-----------~~ 261 (588)
T 2j04_A 217 --------------------VSRMIQNASRRKITDLKIV--DYKVVLTC--PGYVHKIDLKNYSISS-----------LK 261 (588)
T ss_dssp --------------------CEEEEECCCSSCCCCEEEE--TTEEEEEC--SSEEEEEETTTTEEEE-----------EE
T ss_pred --------------------ceeeecccccCcEEEEEEE--CCEEEEEe--CCeEEEEECCCCeEEE-----------EE
Confidence 00122 2567789999999 57777654 6999999999877643 23
Q ss_pred cccccCeeEEEe--CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390 271 ETRLHGISSLSQ--DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 271 ~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~ 348 (512)
.+|...+..++| +|++..|++++.+|+ ++|.... ++++|++..+++. |+++++|+
T Consensus 262 ~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~--------------------~~~spd~~l~a~~--d~~v~lW~ 318 (588)
T 2j04_A 262 TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--------------------LHVTADNIIAPYL--EKKFKKWS 318 (588)
T ss_dssp CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS--------------------EEEECCCSSHHHH--HHHHHHTT
T ss_pred cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--------------------EEECCCceEEEEc--CCEEEEEE
Confidence 368889999999 999999999999999 9999741 5688999888776 89999999
Q ss_pred cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC
Q 010390 349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD 384 (512)
Q Consensus 349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 384 (512)
...... ..+.+ ...|.+++|+||| +.+|+++.
T Consensus 319 ~~g~~l--~~~~~-~~~I~~va~SPdG-~~lA~~~~ 350 (588)
T 2j04_A 319 TIWNEF--NNYET-TLVIHGISLSPDG-YSIAIVYD 350 (588)
T ss_dssp TTTTSS--SSSCC-EEEEEEEEECTTS-SEEEEEEE
T ss_pred CCCCce--eeecc-ceEEEEEEECCCC-CEEEEEEe
Confidence 865542 34444 6789999999999 89988863
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=6e-31 Score=251.15 Aligned_cols=274 Identities=10% Similarity=0.101 Sum_probs=213.9
Q ss_pred cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCeeee
Q 010390 66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI-LTASGDQTIKIWDAEKKKCTG 144 (512)
Q Consensus 66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~ 144 (512)
.++++++.|+.|++||+.+++. +..+..| ..+.+++|+|++++| ++++.|+.|++||+.+++.+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-------------~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-------------TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-------------EEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeE-------------EEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE
Confidence 4788899999999999987632 4555555 458999999999987 577789999999999999988
Q ss_pred cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390 145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT 224 (512)
Q Consensus 145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (512)
.+..+. .+.+++|+|++..++++++.|+.|++||+.+++... . ..+...+.
T Consensus 69 ~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~---------------------------~-~~~~~~~~ 119 (391)
T 1l0q_A 69 TVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---------------------------T-VKTGKSPL 119 (391)
T ss_dssp EEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---------------------------E-EECSSSEE
T ss_pred EEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE---------------------------E-EeCCCCcc
Confidence 887655 899999999984444666678999999998654221 1 12334689
Q ss_pred EEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEE-EEEecCCeEEEEEc
Q 010390 225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL-TASCMDHRIYLYNV 303 (512)
Q Consensus 225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~ 303 (512)
+++|+|+++.++++++.++.|++||+.+++..... . ....+.+++|+|+++.| ++++.++.|++||+
T Consensus 120 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-----------~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 120 GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-----------S-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----------E-CCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE-----------e-cCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 99999999999777878999999999987765432 1 22457899999999987 56678899999998
Q ss_pred ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec---CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeE-
Q 010390 304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS---SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI- 379 (512)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l- 379 (512)
.... ....+.. ...+..++|+|++++|++++ .++.|++||+.+++. ...+..|. .+.+++|+|++ .+|
T Consensus 188 ~~~~--~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~~~~s~dg-~~l~ 259 (391)
T 1l0q_A 188 VTNS--VIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-TARIPVGP-DPAGIAVTPDG-KKVY 259 (391)
T ss_dssp TTTE--EEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-EEEEECCS-SEEEEEECTTS-SEEE
T ss_pred CCCe--EEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE-EEEEecCC-CccEEEEccCC-CEEE
Confidence 7642 2222222 34567899999999998887 689999999988765 34555554 58999999999 555
Q ss_pred EEEeCCCcEEEEeCCCCcccccc
Q 010390 380 VTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 380 ~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
++++.|+.|++||+.+++++..+
T Consensus 260 ~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 260 VALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEECCCCcEEEEE
Confidence 78889999999999999877654
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.1e-31 Score=255.25 Aligned_cols=286 Identities=11% Similarity=0.082 Sum_probs=222.0
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
..+.+++| +|++.++++++.++.|++||+.+++... ......+.+|.+.|.+++|++++.++++++.|+
T Consensus 123 ~~~~~~~~---s~~~~~~~~~~~~~~i~~~d~~~g~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 123 FQPKSVRF---IDNTRLAIPLLEDEGMDVLDINSGQTVR--------LSPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp SCBCCCEE---SSSSEEEEEBTTSSSEEEEETTTCCEEE--------ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred CCceEEEE---eCCCeEEEEeCCCCeEEEEECCCCeEee--------ecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 44568888 8988899999999999999998764311 011224568999999999999999999999999
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS 210 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (512)
.|++||+.+++.+..+..|...+.+++|+|++..++++++.|+.|++||+++++...
T Consensus 192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~----------------------- 248 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR----------------------- 248 (433)
T ss_dssp EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-----------------------
T ss_pred EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-----------------------
Confidence 999999999999999988999999999999984444666689999999998654221
Q ss_pred ccceecccccccEEEEEEeecCCEEEEEee-------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390 211 KRVSRRKAASMSITSVLYLKDEVSIATASA-------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
.. .....+.+++|+|+++.+++++. .|+.|++||+++++... ...+...+.+++|+
T Consensus 249 ----~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~------------~~~~~~~~~~~~~~ 311 (433)
T 3bws_A 249 ----KT-DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID------------TIGPPGNKRHIVSG 311 (433)
T ss_dssp ----EC-CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE------------EEEEEECEEEEEEC
T ss_pred ----Ee-cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe------------eccCCCCcceEEEC
Confidence 11 12345899999999999888663 47899999999876543 22344578899999
Q ss_pred CCCCEE-EEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC---------------CCCEEEE
Q 010390 284 SNGVFL-TASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS---------------DGNAYVW 347 (512)
Q Consensus 284 ~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---------------dg~i~iw 347 (512)
|+++.+ ++++.++.|++||+.+.. ....+. ....+..++|+|++++|++++. ||.|++|
T Consensus 312 ~~g~~l~~~~~~~~~v~v~d~~~~~--~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~ 386 (433)
T 3bws_A 312 NTENKIYVSDMCCSKIEVYDLKEKK--VQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386 (433)
T ss_dssp SSTTEEEEEETTTTEEEEEETTTTE--EEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEECCCCc--EEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence 999755 566899999999987532 223332 2344678999999998888776 5799999
Q ss_pred ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCC
Q 010390 348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLEN 395 (512)
Q Consensus 348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~ 395 (512)
|+.+++. ...+.. ...+.+++|+|++ .+|++++ .|+.|++|+++.
T Consensus 387 d~~~~~~-~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 387 DTTTDTV-KEFWEA-GNQPTGLDVSPDN-RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ETTTTEE-EEEEEC-SSSEEEEEECTTS-CEEEEEETTTTEEEEEEETT
T ss_pred ECCCCcE-EEEecC-CCCCceEEEcCCC-CEEEEEECCCCeEEEEEecC
Confidence 9988765 334443 4679999999999 7777766 599999999864
No 115
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=250.52 Aligned_cols=306 Identities=15% Similarity=0.190 Sum_probs=201.3
Q ss_pred CCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC---CCE
Q 010390 47 HGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE---DTN 122 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~---~~~ 122 (512)
.+|.++|.+++| +| ++++|++++.||.|++||+.++.. ...+ .+...+.++.|++. +.+
T Consensus 96 ~~~~~~v~~~~~---~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (408)
T 4a11_B 96 DVHRYSVETVQW---YPHDTGMFTSSSFDKTLKVWDTNTLQT-------------ADVF-NFEETVYSHHMSPVSTKHCL 158 (408)
T ss_dssp TCCSSCEEEEEE---CTTCTTCEEEEETTSEEEEEETTTTEE-------------EEEE-ECSSCEEEEEECSSCSSCCE
T ss_pred ccCCCcEEEEEE---ccCCCcEEEEEeCCCeEEEeeCCCCcc-------------ceec-cCCCceeeeEeecCCCCCcE
Confidence 469999999999 88 778999999999999999987532 3333 37789999999994 459
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
|++++.|+.|++||+.+++.+..+..|...|.+++|+|++..+|++++.||.|++||++...........
T Consensus 159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~---------- 228 (408)
T 4a11_B 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ---------- 228 (408)
T ss_dssp EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCT----------
T ss_pred EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccc----------
Confidence 9999999999999999999999999999999999999998557999999999999999876532211000
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
...............|...|.+++|+|++..+++++ .||.|++||+++++......... .......+.....
T Consensus 229 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 300 (408)
T 4a11_B 229 -HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSNGENTLVNYGKV------CNNSKKGLKFTVS 300 (408)
T ss_dssp -TTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCBCCCCCCCC------CCCCSSCCCCEEC
T ss_pred -cccccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCCCccceeccccc------cccccccceeEEe
Confidence 000001112223457888999999999999998754 79999999999877644322111 1111122223333
Q ss_pred CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390 283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362 (512)
Q Consensus 283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h 362 (512)
...+..+++++.++.|++||+.+. ..+..+.++ ...+.+++|+|++++|++|+.||.|++|++.+.+... ....+
T Consensus 301 ~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~ 375 (408)
T 4a11_B 301 CGCSSEFVFVPYGSTIAVYTVYSG--EQITMLKGH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP-DDDET 375 (408)
T ss_dssp CSSSSCEEEEEETTEEEEEETTTC--CEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------
T ss_pred cCCCceEEEEecCCEEEEEECcCC--cceeeeccC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC-CCCce
Confidence 344556777788999999998763 445555554 3568899999999999999999999999999876532 22222
Q ss_pred cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
-....+.+.....+.+.+.|+.+++|+...
T Consensus 376 ---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 376 ---TTKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ---------------------------------
T ss_pred ---EeccccccccceeecccCccCceeecCCcc
Confidence 122334443335677788899999998753
No 116
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.3e-30 Score=237.26 Aligned_cols=251 Identities=14% Similarity=0.221 Sum_probs=206.8
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
+.+.+|...|.+|+| +|++++||+|+.||.|+|||+++++ .+..+.+|...+.++.+ ++..|
T Consensus 61 ~~~~~~~~~V~~v~~---~~~~~~l~sgs~Dg~v~iw~~~~~~-------------~~~~~~~h~~~~~~~~~--~~~~l 122 (318)
T 4ggc_A 61 LQMEQPGEYISSVAW---IKEGNYLAVGTSSAEVQLWDVQQQK-------------RLRNMTSHSARVGSLSW--NSYIL 122 (318)
T ss_dssp EECCSTTCCEEEEEE---CTTSSEEEEEETTSEEEEEETTTTE-------------EEEEEECCSSCEEEEEE--ETTEE
T ss_pred EEecCCCCeEEEEEE---CCCCCEEEEEECCCcEEEeecCCce-------------eEEEecCccceEEEeec--CCCEE
Confidence 456789999999999 9999999999999999999998763 37778899999887665 56799
Q ss_pred EEEeCCCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 124 LTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
++++.++.+++|+.... ..+..+.+|...+..+.+.+++ .+|++++.||.|++||+++++.....
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~------------- 188 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVP------------- 188 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCC-------------
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccc-------------
Confidence 99999999999998776 4567788999999999999988 89999999999999999876543211
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEE--EEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIA--TASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
......+...|.++.+++++..++ .+++.++.|++||.+...... ...+...+..+
T Consensus 189 ----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~------------~~~~~~~v~~~ 246 (318)
T 4ggc_A 189 ----------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS------------AVDAHSQVCSI 246 (318)
T ss_dssp ----------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE------------EEECSSCEEEE
T ss_pred ----------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc------------cccceeeeeee
Confidence 123345677899999999877654 345678999999998876553 34455679999
Q ss_pred EeCCCCCEEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390 281 SQDSNGVFLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 281 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 352 (512)
.+++++..+++++ .|+.|++||+.+ ...+..+.+|. ..|.+++|+|++++|++|+.||+|+|||+...
T Consensus 247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~--~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 247 LWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eecccccceEEEEEcCCCEEEEEECCC--CcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999887765 789999999876 34566777664 56899999999999999999999999998654
No 117
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.8e-30 Score=247.70 Aligned_cols=239 Identities=18% Similarity=0.365 Sum_probs=197.9
Q ss_pred cccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 104 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
..+|...|++++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++ .+|++|+.||.|++||+.++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCC
Confidence 3467788999887 7999999999999999999999999999999999999999 44 89999999999999999866
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
+.. ..+..|...|.+++|++ ..+++ |+.||.|++||+++........
T Consensus 204 ~~~---------------------------~~~~~h~~~v~~l~~~~--~~l~s-~s~dg~i~vwd~~~~~~~~~~~--- 250 (435)
T 1p22_A 204 EML---------------------------NTLIHHCEAVLHLRFNN--GMMVT-CSKDRSIAVWDMASPTDITLRR--- 250 (435)
T ss_dssp CEE---------------------------EEECCCCSCEEEEECCT--TEEEE-EETTSCEEEEECSSSSCCEEEE---
T ss_pred cEE---------------------------EEEcCCCCcEEEEEEcC--CEEEE-eeCCCcEEEEeCCCCCCceeee---
Confidence 432 24456788999999974 45555 6689999999998876542110
Q ss_pred ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390 264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN 343 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 343 (512)
....|...|.++++ +++++++++.||.|++||+.+. ..+..+.++. ..+.++++ +++++++|+.||.
T Consensus 251 -----~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~--~~v~~~~~--~~~~l~~g~~dg~ 317 (435)
T 1p22_A 251 -----VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC--EFVRTLNGHK--RGIACLQY--RDRLVVSGSSDNT 317 (435)
T ss_dssp -----EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC--CEEEEEECCS--SCEEEEEE--ETTEEEEEETTSC
T ss_pred -----EecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC--cEEEEEcCCC--CcEEEEEe--CCCEEEEEeCCCe
Confidence 45677788999999 7889999999999999999763 3455555543 44667777 5789999999999
Q ss_pred EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 344 i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
|++||+.+++. ...+.+|...|.+++| ++ .+|++|+.||.|++||+.+++
T Consensus 318 i~iwd~~~~~~-~~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 318 IRLWDIECGAC-LRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EEEEETTTCCE-EEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHT
T ss_pred EEEEECCCCCE-EEEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCC
Confidence 99999998766 4678899999999999 55 799999999999999997765
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.4e-30 Score=241.86 Aligned_cols=243 Identities=10% Similarity=0.102 Sum_probs=179.1
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 180 (512)
+..+..|.+.|++++|+||+++|++|+.++ ++|||+.+++....... ..+..+++.+++..++++++.|+.|++||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 556688999999999999999999998776 78999988876655432 247778888877444477888899999999
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc-cceecc
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL-KAQITQ 259 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~-~~~~~~ 259 (512)
.+++... .+ .+...|.++.++++. ++++ .++.|++||+.+. +....
T Consensus 89 ~~~~~~~---------------------------~~-~~~~~v~~v~~~~~~--~~~~--~~~~i~i~d~~~~~~~~~~- 135 (355)
T 3vu4_A 89 VKKQDVS---------------------------RI-KVDAPVKDLFLSREF--IVVS--YGDVISVFKFGNPWKRITD- 135 (355)
T ss_dssp TTTEEEE---------------------------EE-ECSSCEEEEEECSSE--EEEE--ETTEEEEEESSTTCCBSSC-
T ss_pred CCCcEEE---------------------------EE-ECCCceEEEEEcCCE--EEEE--EcCEEEEEECCCCceeeEE-
Confidence 8654322 11 245589999998764 4433 3889999999987 43322
Q ss_pred cCCCccccccccccccCeeEEEeCCCCCEEEE--EecCCeEEEEEcccCCC-------------Cc-eEeeeeceeceeE
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTA--SCMDHRIYLYNVLQLDK-------------GP-IQHFSGCRIESFY 323 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~-------------~~-~~~~~~~~~~~~~ 323 (512)
... ....+++++ .++++ |+.+|.|++||+..... .+ ...+.+| ...+
T Consensus 136 ----------~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v 198 (355)
T 3vu4_A 136 ----------DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPI 198 (355)
T ss_dssp ----------CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCE
T ss_pred ----------ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCce
Confidence 111 233455555 55665 57999999999976430 01 4455555 4568
Q ss_pred EEEEECCCCCEEEEecCCCC-EEEEecCCCCCCCceec-c-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 324 VKSEICPNASHILSGSSDGN-AYVWQVNKPQADPIKLK-S-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 324 ~~~~~s~~~~~l~~g~~dg~-i~iw~~~~~~~~~~~~~-~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
.+++|+|++++|++|+.|++ |++||+.+++.. ..+. + |...|++++|+|++ .+|++++.|++|++||+..+..
T Consensus 199 ~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 199 KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp EEEEECTTSSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSC
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCC
Confidence 89999999999999999998 999999988764 5565 5 99999999999999 8999999999999999987653
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.4e-28 Score=234.77 Aligned_cols=293 Identities=12% Similarity=0.086 Sum_probs=213.0
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEE-EEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIF-AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
.+...+.+|. .+.+++| +|+|++| ++++.|+.|++||+.+++. +..+..+. .+.+++|+|+
T Consensus 23 ~~~~~~~~~~-~~~~~~~---s~dg~~l~~~~~~d~~i~v~d~~~~~~-------------~~~~~~~~-~v~~~~~spd 84 (391)
T 1l0q_A 23 KVTATIPVGS-NPMGAVI---SPDGTKVYVANAHSNDVSIIDTATNNV-------------IATVPAGS-SPQGVAVSPD 84 (391)
T ss_dssp EEEEEEECSS-SEEEEEE---CTTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEECSS-SEEEEEECTT
T ss_pred eEEEEeecCC-CcceEEE---CCCCCEEEEECCCCCeEEEEECCCCeE-------------EEEEECCC-CccceEECCC
Confidence 3344445554 3678877 9999976 6777899999999977632 44444444 9999999999
Q ss_pred CCEEEE-EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 120 DTNILT-ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 120 ~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
+++|+. ++.++.|++||+.+++.+..+..+ ..+.+++|+|++..++++++.|+.|++||+.+++...
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~----------- 152 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN----------- 152 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-----------
T ss_pred CCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-----------
Confidence 998864 446799999999999988887754 5789999999984444788889999999998654221
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
.+ .....+.+++|+|+++.+++++..++.|++||+++++.... ..+...+.
T Consensus 153 ----------------~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------------~~~~~~~~ 203 (391)
T 1l0q_A 153 ----------------TV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------------VKVEAAPS 203 (391)
T ss_dssp ----------------EE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------------EECSSEEE
T ss_pred ----------------EE-ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE------------EecCCCcc
Confidence 11 12345789999999999977777899999999998765532 22345688
Q ss_pred EEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEecCCCCC
Q 010390 279 SLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~ 354 (512)
+++|+|++++|++++ .++.|++||+.+. ..+..+..+ ..+.+++|+|++++| ++++.|+.|++||+.+++.
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTT--EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCC--eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 999999999999888 6899999998753 233334333 235779999999987 6778899999999988654
Q ss_pred CCceeccccCCeE---EEEeCCCC---------------------CCeEEEEeCCCcEEEEeCCCCcc
Q 010390 355 DPIKLKSHDGEVT---AVNWCPNE---------------------AGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 355 ~~~~~~~h~~~v~---~v~~~~~~---------------------~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
...+..|..+.. .+.+.|++ +..+...+.|..+++||+.++..
T Consensus 279 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 279 -TATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp -EEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred -EEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 234444433211 12222211 02356666788999999988764
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=5e-29 Score=241.28 Aligned_cols=252 Identities=11% Similarity=0.081 Sum_probs=196.8
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee-----cccCcCCCEEEEEeeCCCCCeEEEEeCCCcE
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG-----ALMGHTGSIKSLCSHPTNSDILVSGSRDGSF 175 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 175 (512)
+..+..+ ..+.+++|+|++.++++++.|+.|++||+.+++... .+.+|...|.+++|++++ .++++++.|+.|
T Consensus 116 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v 193 (433)
T 3bws_A 116 ISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAV 193 (433)
T ss_dssp EEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEE
T ss_pred EEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEE
Confidence 3444444 456699999977778888889999999999998876 556788999999999877 899999999999
Q ss_pred EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390 176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA 255 (512)
Q Consensus 176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~ 255 (512)
++||+++++... .+..|...+.+++|+|++..+++++..++.|++||+++++.
T Consensus 194 ~~~d~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 194 HVFDLKTLAYKA---------------------------TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp EEEETTTCCEEE---------------------------EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEECCCceEEE---------------------------EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence 999997654221 33356678999999999999988787899999999998766
Q ss_pred eecccCCCccccccccccccCeeEEEeCCCCCEEEEEe--------cCCeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390 256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC--------MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE 327 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (512)
.... .....+.+++|+|+++++++++ .||.|++||+.+.. ..... .+ ...+..++
T Consensus 247 ~~~~------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~-~~--~~~~~~~~ 309 (433)
T 3bws_A 247 IRKT------------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTI-GP--PGNKRHIV 309 (433)
T ss_dssp EEEC------------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEE-EE--EECEEEEE
T ss_pred EEEe------------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--EEeec-cC--CCCcceEE
Confidence 5432 1123489999999999999888 48899999987542 22222 11 23567799
Q ss_pred ECCCCCEE-EEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC---------------CCcEEEE
Q 010390 328 ICPNASHI-LSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD---------------DYTVRLW 391 (512)
Q Consensus 328 ~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~---------------dg~i~vw 391 (512)
|+|+++.+ ++++.|+.|++||+.+++.. ..+ .+...+.+++|+|++ .+|++++. ||.|++|
T Consensus 310 ~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-~~~-~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~ 386 (433)
T 3bws_A 310 SGNTENKIYVSDMCCSKIEVYDLKEKKVQ-KSI-PVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386 (433)
T ss_dssp ECSSTTEEEEEETTTTEEEEEETTTTEEE-EEE-ECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEECCCCcEE-EEe-cCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEE
Confidence 99999755 66788999999999876542 333 467889999999999 77777765 5799999
Q ss_pred eCCCCccccc
Q 010390 392 SLENSRCSSM 401 (512)
Q Consensus 392 d~~~~~~~~~ 401 (512)
|+.+++.+..
T Consensus 387 d~~~~~~~~~ 396 (433)
T 3bws_A 387 DTTTDTVKEF 396 (433)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCcEEEE
Confidence 9998876554
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-28 Score=237.88 Aligned_cols=258 Identities=11% Similarity=0.057 Sum_probs=195.3
Q ss_pred CCccCCcceEEEEEecCCCcEE-EEeeCCCcEEEEECC--CCCCccccccccccccceeccc--cCCCcEEEEEEecCCC
Q 010390 47 HGEETPPLAVSFCKTSKNSHIF-AVSDEDGYVSLFDSR--RKLPSFACHRENAEKARISDWV--AHQNAIFDLCWIKEDT 121 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~l-atg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~s~~~~ 121 (512)
.+|.+.|.+++| +|++++| |+|+.||.|+|||+. ++.. +..+. .|...|++++|+|+++
T Consensus 99 ~~~~~~v~~~~~---s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-------------~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 99 PPIYSYIRNLRL---TSDESRLIACADSDKSLLVFDVDKTSKNV-------------LKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -CCCCCEEEEEE---CTTSSEEEEEEGGGTEEEEEEECSSSSSC-------------EEEEEEEECSSCEEEEEECTTSS
T ss_pred CccCCceEEEEE---cCCCCEEEEEECCCCeEEEEECcCCCCce-------------eeeeecccCCCCceEEEEcCCCC
Confidence 467778999998 9999996 899999999999997 5432 33443 6779999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeee----cccCcCCCEEEEEeeCC---CCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 122 NILTASGDQTIKIWDAEKKKCTG----ALMGHTGSIKSLCSHPT---NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
+|++|+.||.|++|++.+++... .+.+|...|++++|+|+ + .+|++++.|+.|++||++++.....
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~------ 235 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDK------ 235 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEE------
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeee------
Confidence 99999999999999998887554 78889999999999998 6 8999999999999999986543221
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc--------
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES-------- 266 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-------- 266 (512)
...+|...|.+++|+ ++..++++ +.|+.|++||+++++............
T Consensus 236 --------------------~~~~h~~~v~~~~~s-d~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (450)
T 2vdu_B 236 --------------------WLFGHKHFVSSICCG-KDYLLLSA-GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHL 293 (450)
T ss_dssp --------------------ECCCCSSCEEEEEEC-STTEEEEE-ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSB
T ss_pred --------------------eecCCCCceEEEEEC-CCCEEEEE-eCCCeEEEEECCCCcEeeeecchhhhhhhhhhccc
Confidence 134678899999999 99888875 489999999999887655432111000
Q ss_pred ------cccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCC---CceEeeeeceeceeEEEEEECCCCCEEE
Q 010390 267 ------SSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDK---GPIQHFSGCRIESFYVKSEICPNASHIL 336 (512)
Q Consensus 267 ------~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 336 (512)
..........|.+++|+|++++|++++ .++.|++|++..... ..+..+..+ ..+.+++|+|++.+++
T Consensus 294 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~ 370 (450)
T 2vdu_B 294 APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVT 370 (450)
T ss_dssp C----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEE
T ss_pred ccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEE
Confidence 000012345689999999999999999 899999999922222 233334433 5688999999654444
Q ss_pred EecC------CCCEEEEecCCC
Q 010390 337 SGSS------DGNAYVWQVNKP 352 (512)
Q Consensus 337 ~g~~------dg~i~iw~~~~~ 352 (512)
+++. +..|.+|.+...
T Consensus 371 ~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 371 LDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp ECCTTCCSSCCCSEEEEEEETT
T ss_pred EecccCCCCCCcceEEEEEEcC
Confidence 4443 455888877543
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.1e-30 Score=246.88 Aligned_cols=321 Identities=11% Similarity=0.063 Sum_probs=177.0
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccc----------------cccceeccccCCCcEEEE
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENA----------------EKARISDWVAHQNAIFDL 114 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~~~~~~~~h~~~V~~l 114 (512)
..++++.|+..+|++..|++++.++.|.+|+............... ..........|...+...
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence 4567888876677665444444588899998653322110000000 000011112233334444
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCee-----eecccCcCCCEEEEEeeC--------CCCCeEEEEeCCCcEEEEeCC
Q 010390 115 CWIKEDTNILTASGDQTIKIWDAEKKKC-----TGALMGHTGSIKSLCSHP--------TNSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 115 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~--------~~~~~l~s~~~dg~i~vwd~~ 181 (512)
.+.+++.+|++|+.|++|+|||+.+++. +..+.+|.+.|++++|+| ++ ++|++++.|++|++||++
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECC
Confidence 4455677899999999999999988754 456789999999999997 45 899999999999999997
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~ 261 (512)
++.. ......|...+.+++|+|++..++++|+.|+.|++||+++++.......
T Consensus 175 ~~~~---------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 175 DEGP---------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp TTEE---------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred CCce---------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence 5432 2244567889999999999887666688999999999998765433211
Q ss_pred CCc--------------cccccccccccCeeEEEeC-CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEE
Q 010390 262 PHA--------------ESSSAKETRLHGISSLSQD-SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS 326 (512)
Q Consensus 262 ~~~--------------~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 326 (512)
... ........|...+.++.|. ++++.|++++.|+.+++||+..... .
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~--~--------------- 290 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND--Y--------------- 290 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC--C---------------
Confidence 100 0000122334445555553 4555555555555555555432110 0
Q ss_pred EECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCcc
Q 010390 327 EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSS 406 (512)
Q Consensus 327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 406 (512)
..+.. ....++....... ......+...+..+.+.+.+..++++|+.||.|++||+.++++.....
T Consensus 291 ------~~l~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~--- 356 (393)
T 4gq1_A 291 ------NEISD----STMKLGPKNLLPN-VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI--- 356 (393)
T ss_dssp -----------------------CCSCS-EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE---
T ss_pred ------ceEee----ecCccccEEEccc-cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec---
Confidence 00000 0011111110000 111222222233333333332467788899999999999887654311
Q ss_pred ccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390 407 VRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD 452 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 452 (512)
..+.. +. .++|+|||+++++++..
T Consensus 357 -----------------~~~~~----V~-svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 357 -----------------QLGMP----IV-DFCWHQDGSHLAIATEG 380 (393)
T ss_dssp -----------------ECSSC----EE-EEEECTTSSEEEEEESS
T ss_pred -----------------CCCCc----EE-EEEEcCCCCEEEEEeCC
Confidence 11111 22 67888898888877543
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.8e-30 Score=237.95 Aligned_cols=244 Identities=9% Similarity=0.066 Sum_probs=180.9
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 115 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|. +++++.|++|++|+..........
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~----- 111 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDS----- 111 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEET-----
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeec-----
Confidence 444578899999999999999999998887776 457888888885 999999999999998642100000
Q ss_pred eeecccccccccccccc-cceecccccccEEEEEEee--cCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390 195 VFSSAVVKGAHLLSQSK-RVSRRKAASMSITSVLYLK--DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~--~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
.... .......|...|.+++|+| ++..+++ ++.||.|++||+++++..... ..
T Consensus 112 -------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~s~dg~i~~wd~~~~~~~~~~----------~~ 167 (343)
T 3lrv_A 112 -------------KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIW-ADNRGTIGFQSYEDDSQYIVH----------SA 167 (343)
T ss_dssp -------------TTCCEEEEEECCCSSCEEEEECCC---CCEEEE-EETTCCEEEEESSSSCEEEEE----------CC
T ss_pred -------------CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEE-EeCCCcEEEEECCCCcEEEEE----------ec
Confidence 0001 0112225567899999999 9988887 448999999999988764321 22
Q ss_pred ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390 272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351 (512)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 351 (512)
.+...+.+++|+|++.+|++|+.||.|++||+++.... ...+.. .+...+.+++|+|++.+|++++ |+.|++||+++
T Consensus 168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-SSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-CEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-ccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence 34456999999999999999999999999999875432 133443 1246789999999999999999 55999999998
Q ss_pred CCCC--CceeccccCCeE--EEEeCCCCCCeEEEEeC-CCcEEEEeCCCCc
Q 010390 352 PQAD--PIKLKSHDGEVT--AVNWCPNEAGKIVTSSD-DYTVRLWSLENSR 397 (512)
Q Consensus 352 ~~~~--~~~~~~h~~~v~--~v~~~~~~~~~l~s~~~-dg~i~vwd~~~~~ 397 (512)
.+.. ...+..|...+. +++|+|++ .+|++++. |+.|++|++..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTT
T ss_pred CCcceeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccc
Confidence 7653 112223444444 69999999 89999988 9999999997654
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.6e-28 Score=218.10 Aligned_cols=284 Identities=10% Similarity=0.144 Sum_probs=172.8
Q ss_pred ceEEEEEecCCCc---EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE-EeCC
Q 010390 54 LAVSFCKTSKNSH---IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT-ASGD 129 (512)
Q Consensus 54 ~~v~~~~~s~~~~---~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~d 129 (512)
..++.++|-..|. -+++++ +..|++|+..+.. .-+++.+++.|+.+|..+.+.||..-|+. +-..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 108 (356)
T 2w18_A 40 VDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAW----------QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN 108 (356)
T ss_dssp EEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSS----------BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS
T ss_pred EEEeeeeeccCCCCccEEEEec-cceEEEcccCCCc----------cceeeEEEeccCceeEEEEEcCcccceeeeeecc
Confidence 3445555554443 567777 5589999988752 12447788888888887777775443332 1111
Q ss_pred -CcEEEEeC--CCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEe--CCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 130 -QTIKIWDA--EKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGS--RDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 130 -g~i~iwd~--~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
..-.|+-+ ... .....-.+|...|..+ +++ +++.+++ .|+.|++|++....
T Consensus 109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g-~lv~ss~~g~d~~V~~~~~s~dG---------------- 168 (356)
T 2w18_A 109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKR-RLVSSSGTLSDQQVEVMTFAEDG---------------- 168 (356)
T ss_dssp SSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTT-EEEEEESSSTTCEEEEEEECTTS----------------
T ss_pred ccccceEEEEECCCccccccEEEeCCCeEEEEec---CCC-cEEEecccCCCCcEEEEEECCCC----------------
Confidence 11111111 111 1111112343344443 333 4555533 47888888874311
Q ss_pred ccccccccccccceecccccccEEEEEEee---cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLK---DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
+.......|...+..++|++ ++..+++ |+.|++|++||+.+++...+... ...+...+
T Consensus 169 ----------~~~~s~~~~~~~v~~l~fs~~~g~~~~LaS-gS~D~TIkIWDl~TGk~l~tL~g--------~~~~v~~v 229 (356)
T 2w18_A 169 ----------GGKENQFLMPPEETILTFAEVQGMQEALLG-TTIMNNIVIWNLKTGQLLKKMHI--------DDSYQASV 229 (356)
T ss_dssp ----------CEEEEEEECCCSSCEEEEEEEETSTTEEEE-EETTSEEEEEETTTCCEEEEEEC--------CC---CCC
T ss_pred ----------ceeeeeccCCCceeeEEeeccCCCCceEEE-ecCCCcEEEEECCCCcEEEEEcC--------CCcceeee
Confidence 11223446777888888888 5566666 66899999999999987765321 11122467
Q ss_pred eEEEeCCCCCEE------------EEEecCCeEEEEEcccCCCCceEee---eeceeceeEEEEEECCCCCEEEEecCCC
Q 010390 278 SSLSQDSNGVFL------------TASCMDHRIYLYNVLQLDKGPIQHF---SGCRIESFYVKSEICPNASHILSGSSDG 342 (512)
Q Consensus 278 ~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg 342 (512)
.+++|+|+|.++ ++|+.|++|++||..+.....+..+ .++.. .+.+..+ ++.++++|+.|+
T Consensus 230 ~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~--~~lsg~~--sg~~lASgS~Dg 305 (356)
T 2w18_A 230 CHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG--RFLEGDV--KDHCAAAILTSG 305 (356)
T ss_dssp EEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC--CEEEEEE--ETTEEEEEETTS
T ss_pred EEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc--eeEcccc--CCCEEEEEcCCC
Confidence 788999999876 5677899999999865422111111 12211 1222233 377899999999
Q ss_pred CEEEEecCCCCCCCceeccccCCeE-EEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 343 NAYVWQVNKPQADPIKLKSHDGEVT-AVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 343 ~i~iw~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
+|+|||+.+++. ..++.+|...+. +++|+||+ .+|++|+.|++|+|||+
T Consensus 306 TIkIWDl~tGk~-l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 306 TIAIWDLLLGQC-TALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEETTTCSE-EEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCcE-EEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence 999999999886 467888877655 68999999 89999999999999996
No 125
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.1e-28 Score=231.22 Aligned_cols=312 Identities=14% Similarity=0.123 Sum_probs=201.2
Q ss_pred eccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCC-CCCeEEEEeCCCcEE
Q 010390 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPT-NSDILVSGSRDGSFA 176 (512)
Q Consensus 102 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~ 176 (512)
..+.+|.+.|++++|+|++++|++|+.||.|+|||+.++ +....+.+|...|++++|+|. ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 345799999999999999999999999999999999876 466777899999999999994 238999999999999
Q ss_pred EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCcc
Q 010390 177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
+||++.+....... .......+..|...|.+++|+|+ +..+++ ++.||.|++||+++.+
T Consensus 85 vwd~~~~~~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 85 LWEEDPDQEECSGR------------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-LGNDGILRLYDALEPS 145 (351)
T ss_dssp EEEECTTSCTTSSC------------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTCEEEEEECSSTT
T ss_pred EEecCCCccccccc------------------CcceeeeecccCCceeEEEEcCCCCCcEEEE-ecCCCcEEEecCCChH
Confidence 99998765322110 01223355678899999999999 888887 4589999999999876
Q ss_pred ceecccCCCc--cccccccccccCeeEEEeCCC---CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC
Q 010390 255 AQITQAWPHA--ESSSAKETRLHGISSLSQDSN---GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC 329 (512)
Q Consensus 255 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 329 (512)
.......... ........+...+.+++|+|+ +.++++++.++.+.+|+...........+.++ ...+.+++|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~~ 223 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH--KSLIRSISWA 223 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC--CSCEEEEEEC
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC--CcceeEEEEC
Confidence 5433211110 000122356778999999997 89999999999998888755433334444444 4568899999
Q ss_pred CCC----CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe----CCCcEEEEeCCCCccccc
Q 010390 330 PNA----SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS----DDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 330 ~~~----~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~~~~ 401 (512)
|++ ++|++|+.||.|++||+....... ....+...+....+.+.. ..+..+. .+..+.+|+....+.+..
T Consensus 224 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (351)
T 3f3f_A 224 PSIGRWYQLIATGCKDGRIRIFKITEKLSPL-ASEESLTNSNMFDNSADV-DMDAQGRSDSNTEEKAELQSNLQVELLSE 301 (351)
T ss_dssp CCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEE
T ss_pred CCCCCcceEEEEEcCCCeEEEEeCCCCcCcc-ccCCcccceeccCCCccc-ccccccccccccceeeeecccccccEEEE
Confidence 998 899999999999999998765432 233333344444444443 3333333 233444444433333222
Q ss_pred ccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390 402 RSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP 462 (512)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 462 (512)
+. .+...+. .++|+|++++++.++.. ..+.+|...
T Consensus 302 ~~------------------------~h~~~v~-~~~~s~~~~~l~s~~~d-g~v~iw~~~ 336 (351)
T 3f3f_A 302 HD------------------------DHNGEVW-SVSWNLTGTILSSAGDD-GKVRLWKAT 336 (351)
T ss_dssp EC------------------------TTSSCEE-EEEECSSSCCEEEEETT-SCEEEEEEC
T ss_pred Ee------------------------cccccEE-EEEEcCCCCEEEEecCC-CcEEEEecC
Confidence 11 1111222 66788888877766533 234445444
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=6.8e-27 Score=230.50 Aligned_cols=297 Identities=11% Similarity=0.079 Sum_probs=221.2
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEEC--CCCCCccccccccccccceeccccCCCcEEEEEEec----CCCEEEEE
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDS--RRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK----EDTNILTA 126 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~----~~~~l~s~ 126 (512)
+.+++| +|||++|++++.|+.|.+||+ .+.. .+.++. +...+..++|+| +|++|+++
T Consensus 181 ~~~v~~---spdg~~l~v~~~d~~V~v~D~~~~t~~-------------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~ 243 (543)
T 1nir_A 181 VHISRM---SASGRYLLVIGRDARIDMIDLWAKEPT-------------KVAEIK-IGIEARSVESSKFKGYEDRYTIAG 243 (543)
T ss_dssp EEEEEE---CTTSCEEEEEETTSEEEEEETTSSSCE-------------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEE
T ss_pred cceEEE---CCCCCEEEEECCCCeEEEEECcCCCCc-------------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEE
Confidence 666777 999999999999999999999 5442 244444 456789999999 99999988
Q ss_pred eC-CCcEEEEeCCCCeeeecccC----------cCC-CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 127 SG-DQTIKIWDAEKKKCTGALMG----------HTG-SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 127 ~~-dg~i~iwd~~~~~~~~~~~~----------h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
+. +++|.|||..+++++..+.. |.. .+.++.++|++..++++...++.|.+||+.+.+....
T Consensus 244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~------ 317 (543)
T 1nir_A 244 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV------ 317 (543)
T ss_dssp EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE------
T ss_pred EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee------
Confidence 85 89999999999998887754 223 7899999998877888888999999999986543210
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL 274 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
....+...+.++.|+|+++++++++..++.|.+||+.+++........ ...|.
T Consensus 318 --------------------~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g-------~~ph~ 370 (543)
T 1nir_A 318 --------------------TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG-------KTPHP 370 (543)
T ss_dssp --------------------EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-------SSBCC
T ss_pred --------------------EEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC-------CCCCC
Confidence 011234467789999999999887777899999999998766543210 11122
Q ss_pred cCeeEEEeCCC-CCEEEEEe-cCCeEEEEEcccCC-----CCceEeeeeceeceeEEEEEECCCCCEEEEec-------C
Q 010390 275 HGISSLSQDSN-GVFLTASC-MDHRIYLYNVLQLD-----KGPIQHFSGCRIESFYVKSEICPNASHILSGS-------S 340 (512)
Q Consensus 275 ~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-------~ 340 (512)
.....+ ++|+ +..++++. .|++|.+||+.... .+.+..+..+.. ....++++|++++|++++ .
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEEEcCCCCCcEEEecCCCCCccc
Confidence 222222 4676 55666665 57999999987622 345566665532 234588999999999987 2
Q ss_pred CCCEEEEecCCCCCCCcee--------ccccCCeEEEEeCCCCCCeEEEE-----eCCCcEEEEeCCCCccccccc
Q 010390 341 DGNAYVWQVNKPQADPIKL--------KSHDGEVTAVNWCPNEAGKIVTS-----SDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 341 dg~i~iw~~~~~~~~~~~~--------~~h~~~v~~v~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~ 403 (512)
+++|.+||+.+.+.....+ ..+...+..+.|+|+| ..|+.+ +.|+.|.|||..+++++.++.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g-~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG-DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS-SEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC-CEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 6799999999887653443 3557789999999999 555544 247999999999999887755
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=6.5e-27 Score=230.67 Aligned_cols=291 Identities=10% Similarity=0.074 Sum_probs=213.7
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeC--CC
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDA--EK 139 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~--~~ 139 (512)
+|++.++++++.|+.|.+||..+++. +.++..+.. +..++|+|++++|++++.|++|.+||+ .+
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~-------------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t 211 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKI-------------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE 211 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCE-------------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceE-------------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC
Confidence 89999999999999999999987643 455553333 899999999999999999999999999 88
Q ss_pred CeeeecccCcCCCEEEEEeeC----CCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccce
Q 010390 140 KKCTGALMGHTGSIKSLCSHP----TNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVS 214 (512)
Q Consensus 140 ~~~~~~~~~h~~~v~~l~~~~----~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (512)
++++.++. +...+..++|+| ++ +++++++ .+++|.+||..+.+.......... ...
T Consensus 212 ~~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~-----------------~~~ 272 (543)
T 1nir_A 212 PTKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM-----------------TVD 272 (543)
T ss_dssp CEEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEE-----------------CSS
T ss_pred CcEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCc-----------------ccC
Confidence 88888887 455789999999 88 7777776 589999999887654332211000 000
Q ss_pred ecccc-cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe
Q 010390 215 RRKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC 293 (512)
Q Consensus 215 ~~~~~-~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (512)
....| ...+.++.+++++..++++...++.|.+||..+.+.... ....+...+..+.|+|+|++|++++
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~----------~~i~~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV----------TSIGAAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE----------EEEECCSSCCCEEECTTSCEEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee----------EEeccCcCccCceECCCCCEEEEEe
Confidence 00012 237889999999999888888899999999987654321 1112345578899999999877665
Q ss_pred -cCCeEEEEEcccCCCCceEeeeec--eeceeEEEEEECCC-CCEEEEec-CCCCEEEEecCCC------CCCCceeccc
Q 010390 294 -MDHRIYLYNVLQLDKGPIQHFSGC--RIESFYVKSEICPN-ASHILSGS-SDGNAYVWQVNKP------QADPIKLKSH 362 (512)
Q Consensus 294 -~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~-~~~l~~g~-~dg~i~iw~~~~~------~~~~~~~~~h 362 (512)
.+++|.+||..+.+ .+..+... .+......+ ++|+ +..++++. .|++|.+||+.+. ...+..+..|
T Consensus 343 ~~~~~v~v~D~~tg~--l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 343 NNSNKVAVIDSKDRR--LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp GGGTEEEEEETTTTE--EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred cCCCeEEEEECCCCe--EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence 58999999987643 33333321 111111122 4677 66667765 5799999999872 2235677888
Q ss_pred cCCeEEEEeCCCCCCeEEEEe-------CCCcEEEEeCCCCccc
Q 010390 363 DGEVTAVNWCPNEAGKIVTSS-------DDYTVRLWSLENSRCS 399 (512)
Q Consensus 363 ~~~v~~v~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~ 399 (512)
.+.+..++++|++ ++|++++ .+++|.|||+.++++.
T Consensus 420 g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 420 GGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 8889999999999 7888887 2779999999999865
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2.4e-27 Score=226.97 Aligned_cols=281 Identities=12% Similarity=0.005 Sum_probs=207.5
Q ss_pred EEEEEecCCCc-EEEEee----CCC----cEEEEEC--CCCCCccccccccccccceeccccCCCcEEEEEEec------
Q 010390 56 VSFCKTSKNSH-IFAVSD----EDG----YVSLFDS--RRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK------ 118 (512)
Q Consensus 56 v~~~~~s~~~~-~latg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~------ 118 (512)
+.|..|++.|. ++++|+ .+| .|+|||+ .+++.. ....+.+|...+..+++++
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~d~~~~ 133 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-----------AQNSYKVNKQWLRYAGHTASDEVFE 133 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-----------EEEEEEECGGGHHHHHHHHHHHHHH
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-----------eeeEEEcChhHHHHHHHHHHHHHHH
Confidence 33444477774 776875 567 8999999 766421 1244677777777777664
Q ss_pred --------CCCEEEEEeCC------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC---cEEEEeCC
Q 010390 119 --------EDTNILTASGD------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG---SFAIWDLR 181 (512)
Q Consensus 119 --------~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~ 181 (512)
.+..|+.++.+ +.|++||+. +.....+..|...|.+++|+|++ +.|++++.|+ .|++||+.
T Consensus 134 ~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~ 211 (415)
T 2hqs_A 134 KLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLA 211 (415)
T ss_dssp HHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETT
T ss_pred HHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECC
Confidence 25677766554 799999997 45567777899999999999998 8899888875 99999998
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecc
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQ 259 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~ 259 (512)
+++.. .+..+...+.+++|+|+++.++++++.++ .|++||+.+++..
T Consensus 212 tg~~~----------------------------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--- 260 (415)
T 2hqs_A 212 NGAVR----------------------------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--- 260 (415)
T ss_dssp TCCEE----------------------------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred CCcEE----------------------------EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE---
Confidence 65421 22345568999999999999987665655 4999999886643
Q ss_pred cCCCccccccccccccCeeEEEeCCCCCEEEEEec-CC--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-DH--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL 336 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 336 (512)
.+..+...+.+++|+|||++|++++. ++ .|++||+.... ...+..+ ...+..++|+|+|++|+
T Consensus 261 ---------~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---~~~l~~~--~~~~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 261 ---------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---PQRITWE--GSQNQDADVSSDGKFMV 326 (415)
T ss_dssp ---------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---CEECCCS--SSEEEEEEECTTSSEEE
T ss_pred ---------eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---EEEEecC--CCcccCeEECCCCCEEE
Confidence 24445567999999999999988876 44 67778876543 2222222 23566799999999998
Q ss_pred EecCC---CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC---cEEEEeCCCCcc
Q 010390 337 SGSSD---GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY---TVRLWSLENSRC 398 (512)
Q Consensus 337 ~g~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~ 398 (512)
+++.+ ..|++||+.+++. ..+..|. .+.+++|+|++ ++|++++.|+ .|++||+..+..
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRFK 390 (415)
T ss_dssp EEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCCE
T ss_pred EEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCC-CEEEEEEcCCCccEEEEEECCCCcE
Confidence 87764 5799999988765 3455554 89999999999 7888888776 899999985543
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2e-26 Score=220.55 Aligned_cols=265 Identities=13% Similarity=0.075 Sum_probs=201.3
Q ss_pred eecCCccCCcceEEEEEecC--------------CCcEEEEeeCC------CcEEEEECCCCCCccccccccccccceec
Q 010390 44 VEHHGEETPPLAVSFCKTSK--------------NSHIFAVSDED------GYVSLFDSRRKLPSFACHRENAEKARISD 103 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~--------------~~~~latg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 103 (512)
..+.+|...+..+++ ++ .+..++.++.+ +.|++||++... ...
T Consensus 111 ~~~~~~~~~~~~~~~---~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------------~~~ 173 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGH---TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN--------------QFV 173 (415)
T ss_dssp EEEEECGGGHHHHHH---HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS--------------CEE
T ss_pred eEEEcChhHHHHHHH---HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC--------------CEE
Confidence 446677777777666 43 25566665543 799999987532 455
Q ss_pred cccCCCcEEEEEEecCCCEEEEEeCCC---cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEE-EEeCCCc--EEE
Q 010390 104 WVAHQNAIFDLCWIKEDTNILTASGDQ---TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV-SGSRDGS--FAI 177 (512)
Q Consensus 104 ~~~h~~~V~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~~~dg~--i~v 177 (512)
+.+|...|.+++|+|+|++|++++.++ .|++||+.+++.. .+..|...+.+++|+|++ +.|+ +++.|+. |++
T Consensus 174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYV 251 (415)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEE
T ss_pred EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC-CEEEEEEecCCCceEEE
Confidence 678899999999999999999999875 9999999998775 466688899999999998 5555 7776665 999
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccc
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKA 255 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~ 255 (512)
||+.+++. ..+..+...+.+++|+|+++.+++++..++ .|.+||+.+++.
T Consensus 252 ~d~~~~~~----------------------------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 252 MDLASGQI----------------------------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp EETTTCCE----------------------------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred EECCCCCE----------------------------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 99876542 123355668999999999999988764455 677888887653
Q ss_pred eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390 256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 332 (512)
.. ...+...+.+++|+|+|++|++++.+ ..|++||+.+... ..+..+. .+..++|+|+|
T Consensus 304 ~~------------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~~~~---~~~~~~~spdg 365 (415)
T 2hqs_A 304 QR------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSSTF---LDETPSLAPNG 365 (415)
T ss_dssp EE------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCCSS---SCEEEEECTTS
T ss_pred EE------------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---EEecCCC---CcCCeEEcCCC
Confidence 32 22334568899999999999988864 5899999875432 2333332 56779999999
Q ss_pred CEEEEecCCC---CEEEEecCCCCCCCceeccccCCeEEEEeCCCC
Q 010390 333 SHILSGSSDG---NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE 375 (512)
Q Consensus 333 ~~l~~g~~dg---~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 375 (512)
++|++++.++ .|++||+.... ...+..|.+.|.+++|+|..
T Consensus 366 ~~l~~~s~~~~~~~l~~~d~~g~~--~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 366 TMVIYSSSQGMGSVLNLVSTDGRF--KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp SEEEEEEEETTEEEEEEEETTSCC--EEECCCSSSEEEEEEECCCC
T ss_pred CEEEEEEcCCCccEEEEEECCCCc--EEEeeCCCCCCcCCcccccc
Confidence 9999888776 79999987543 35778899999999999965
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=8.1e-27 Score=208.48 Aligned_cols=200 Identities=11% Similarity=0.024 Sum_probs=138.0
Q ss_pred CcceEEEEEecCC----CcEEEEeeC--------------------CCcEEEEECCCCCCccccccccccccceeccccC
Q 010390 52 PPLAVSFCKTSKN----SHIFAVSDE--------------------DGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107 (512)
Q Consensus 52 ~v~~v~~~~~s~~----~~~latg~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h 107 (512)
.|.+|+| +|| ++++++++. |+.|++|++... .+.+..+.+|
T Consensus 113 ~v~sla~---spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d------------G~~~~s~~~~ 177 (356)
T 2w18_A 113 EIRALFC---SSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED------------GGGKENQFLM 177 (356)
T ss_dssp EEEEECC---------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT------------SCEEEEEEEC
T ss_pred ceEEEEE---CCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC------------CceeeeeccC
Confidence 3444444 888 888887663 555666665321 2335566788
Q ss_pred CCcEEEEEEec---CCCEEEEEeCCCcEEEEeCCCCeeeecccCcC---CCEEEEEeeCCCCCeE------------EEE
Q 010390 108 QNAIFDLCWIK---EDTNILTASGDQTIKIWDAEKKKCTGALMGHT---GSIKSLCSHPTNSDIL------------VSG 169 (512)
Q Consensus 108 ~~~V~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l------------~s~ 169 (512)
...++.++|++ ++.+|++|+.|++|+|||+.+++++.++.+|. ..+.+++|+|++ .++ ++|
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSG 256 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLR 256 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC-----------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeecc
Confidence 88888889988 77999999999999999999999999998654 367788999987 554 678
Q ss_pred eCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEe
Q 010390 170 SRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWD 249 (512)
Q Consensus 170 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd 249 (512)
+.|++|++||..++....... .. ...+|...+.+..+ ++..++ +|+.|++|+|||
T Consensus 257 s~D~tIklWd~~tgk~l~v~~-------~~---------------~p~Gh~~~~lsg~~--sg~~lA-SgS~DgTIkIWD 311 (356)
T 2w18_A 257 SPVFQLIVINPKTTLSVGVML-------YC---------------LPPGQAGRFLEGDV--KDHCAA-AILTSGTIAIWD 311 (356)
T ss_dssp -CCEEEEEEETTTTEEEEEEE-------EC---------------CCTTCCCCEEEEEE--ETTEEE-EEETTSCEEEEE
T ss_pred CCCcEEEEEECCCCEEEEEEE-------ee---------------ccCCCcceeEcccc--CCCEEE-EEcCCCcEEEEE
Confidence 899999999998764321100 00 00123333333333 355555 577899999999
Q ss_pred ccCccceecccCCCccccccccccccCee-EEEeCCCCCEEEEEecCCeEEEEEc
Q 010390 250 TRNLKAQITQAWPHAESSSAKETRLHGIS-SLSQDSNGVFLTASCMDHRIYLYNV 303 (512)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~ 303 (512)
+.+++...+ +.+|...+. +++|+|||++|++|+.|++|++||+
T Consensus 312 l~tGk~l~t-----------L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCTAL-----------LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEEEE-----------ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCcEEEE-----------ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999987763 455655554 6899999999999999999999995
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=7.5e-26 Score=234.27 Aligned_cols=303 Identities=10% Similarity=0.060 Sum_probs=206.2
Q ss_pred cCCcceEEEEEecCCCcEEEEeeC-CC-----cEEEEECCCCCCccccccccccccceeccccCC---------------
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDE-DG-----YVSLFDSRRKLPSFACHRENAEKARISDWVAHQ--------------- 108 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~--------------- 108 (512)
...+.+++| ||||++||+++. || .|++||+.++.... +.....+.
T Consensus 36 ~~~~~~~~~---SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 101 (741)
T 2ecf_A 36 GPTLMKPKV---APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL-----------LVDSKVVLPGTETLSDEEKARRE 101 (741)
T ss_dssp CCCCEEEEE---CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE-----------EECGGGTC---------------
T ss_pred CCCCCCceE---ecCCCEEEEEeccCCCCcccEEEEEECCCCceeE-----------ccchhhcccccccccchhhhhhh
Confidence 455778888 999999999988 88 89999998764311 11111111
Q ss_pred -------CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 109 -------NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 109 -------~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
..|.+++|+|||++|++++. +.|++||+.++. ....+..|...+.+++|+|++ +.|+.++ ++.|++||
T Consensus 102 ~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 102 RQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVID 178 (741)
T ss_dssp -----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEE
T ss_pred hhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEe
Confidence 34789999999999999886 899999998883 455677788899999999998 7888877 46999999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC----------------
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS---------------- 243 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg---------------- 243 (512)
+.+++........... .. ..............+.++.|+|||+.|+++...++
T Consensus 179 ~~~g~~~~~~~~~~~~----~~-------~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~ 247 (741)
T 2ecf_A 179 LASGRQMQLTADGSTT----IG-------NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD 247 (741)
T ss_dssp TTTTEEEECCCCCCSS----EE-------ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred cCCCCEEEeccCCccc----ee-------ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence 9865432111000000 00 00000000001123578999999999998664321
Q ss_pred ----------------eEEEEeccC-ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec-----CCeEEEE
Q 010390 244 ----------------IVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-----DHRIYLY 301 (512)
Q Consensus 244 ----------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~ 301 (512)
.|.+||+.+ ++...... ...+...+..++| |||++|++++. +..|++|
T Consensus 248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~ 317 (741)
T 2ecf_A 248 VIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDL---------GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEV 317 (741)
T ss_dssp EEEEECCBTTSCCCEEEEEEECSSTTCCCEEECC---------CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEE
T ss_pred ceEeecCCCCCCCCeeEEEEEECCCCCceEEecC---------CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEE
Confidence 788889887 65432210 1135567899999 99999997764 5689999
Q ss_pred EcccCCCCceEeeeeceece---eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEE-EeCCCCCC
Q 010390 302 NVLQLDKGPIQHFSGCRIES---FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAV-NWCPNEAG 377 (512)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v-~~~~~~~~ 377 (512)
|+.+.... ..+..+. .. .+..++|+|||+++++++.||.++||.++.... ...+..|...|..+ .|+|++ +
T Consensus 318 d~~~g~~~--~~~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg-~ 392 (741)
T 2ecf_A 318 TLASNQQR--VLAHETS-PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKA-G 392 (741)
T ss_dssp ETTTCCEE--EEEEEEC-SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTT-T
T ss_pred ECCCCceE--EEEEcCC-CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCC-C
Confidence 98764322 2222221 11 223579999999999999999888887763322 45677788888887 599999 5
Q ss_pred eE-EEEeCCC--cEEEEeCCC
Q 010390 378 KI-VTSSDDY--TVRLWSLEN 395 (512)
Q Consensus 378 ~l-~s~~~dg--~i~vwd~~~ 395 (512)
.| ++++.|+ .++||++..
T Consensus 393 ~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 393 LAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEEECSSCTTCBEEEEEET
T ss_pred EEEEEEeCCCCceEEEEEEEc
Confidence 55 5566665 899999864
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.9e-24 Score=201.13 Aligned_cols=284 Identities=7% Similarity=0.044 Sum_probs=195.6
Q ss_pred cCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-CCcEEEEeCCC
Q 010390 62 SKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-DQTIKIWDAEK 139 (512)
Q Consensus 62 s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~iwd~~~ 139 (512)
.++++ .++++..++.|.+||..+++. ...+..+...+ .++|+|++++|++++. ++.|.+||+.+
T Consensus 6 ~~~~~~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~ 71 (331)
T 3u4y_A 6 QTTSNFGIVVEQHLRRISFFSTDTLEI-------------LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL 71 (331)
T ss_dssp -CCCCEEEEEEGGGTEEEEEETTTCCE-------------EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS
T ss_pred cCCCCEEEEEecCCCeEEEEeCcccce-------------eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 55554 577788899999999987643 33344455666 9999999997776665 89999999999
Q ss_pred Cee-eecccCcCCCEEEEEeeCCCCCeEEEEeCCC---cEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390 140 KKC-TGALMGHTGSIKSLCSHPTNSDILVSGSRDG---SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR 215 (512)
Q Consensus 140 ~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (512)
++. ...+..+..+..+++|+|++ ++++++..++ .|.+||+.+++....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~--------------------------- 123 (331)
T 3u4y_A 72 EPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFIST--------------------------- 123 (331)
T ss_dssp SSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEE---------------------------
T ss_pred CceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEE---------------------------
Confidence 987 77777666666669999998 7777555553 899999986543211
Q ss_pred cccccccEEEEEEeecCCEEEEEeecCCe-EEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-
Q 010390 216 RKAASMSITSVLYLKDEVSIATASAVNSI-VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC- 293 (512)
Q Consensus 216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 293 (512)
........+++|+|+++.+++++..++. |.+|++.......... . ........+..++|+|+|+++++++
T Consensus 124 -~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~------~~~~~~~~~~~~~~spdg~~l~v~~~ 195 (331)
T 3u4y_A 124 -IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q------EFISGGTRPFNITFTPDGNFAFVANL 195 (331)
T ss_dssp -EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E------EEECSSSSEEEEEECTTSSEEEEEET
T ss_pred -EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C------ccccCCCCccceEECCCCCEEEEEeC
Confidence 1123356899999999988887766688 9999988643322110 0 1112234578999999999766555
Q ss_pred cCCeEEEEEcccCCC-CceEeeeeceeceeEEEEEECCCCCEEEEec-CCCCEEEEecCCCCCCC-ceecc-------cc
Q 010390 294 MDHRIYLYNVLQLDK-GPIQHFSGCRIESFYVKSEICPNASHILSGS-SDGNAYVWQVNKPQADP-IKLKS-------HD 363 (512)
Q Consensus 294 ~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~-~~~~~-------h~ 363 (512)
.++.|.+||+.+... ..+..+.. ...+..++|+|+|++|+++. .++.|.+||+.+++... ..+.. ..
T Consensus 196 ~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
T 3u4y_A 196 IGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL 272 (331)
T ss_dssp TTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred CCCeEEEEECCCCcccceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc
Confidence 689999999876443 11333332 23455689999999776554 57789999998765410 11111 11
Q ss_pred CCeEEEEeCCCCCCeE-EEEeCCCcEEEEeCCCCccc
Q 010390 364 GEVTAVNWCPNEAGKI-VTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~ 399 (512)
.....++|+|++ ++| +++..++.|.+||+......
T Consensus 273 ~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 273 FGANQMALNKTE-TKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp TTCCCEEECTTS-SEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccccceEECCCC-CEEEEecCCCCcEEEEEecCCccc
Confidence 223568999999 555 55566789999999876543
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.3e-24 Score=203.19 Aligned_cols=287 Identities=7% Similarity=0.065 Sum_probs=189.7
Q ss_pred cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC-CcEEEEeCC--CCe-
Q 010390 66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD-QTIKIWDAE--KKK- 141 (512)
Q Consensus 66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~i~iwd~~--~~~- 141 (512)
.++++++.|+.|++||++.... ...+. ...|...+.+++|+|++++|++++.+ +.|.+|++. +++
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~ 74 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGA----------LTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL 74 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSC----------EEEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEeCCCCCeEEEEEECCCCc----------EEEee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce
Confidence 3455557899999999863211 01122 23467789999999999999988886 999999987 554
Q ss_pred -eeecccCcCCCEEEEEeeCCCCCeEEEE-eCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc
Q 010390 142 -CTGALMGHTGSIKSLCSHPTNSDILVSG-SRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219 (512)
Q Consensus 142 -~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (512)
.+..+..+. .+..++|+|++ .+|+++ ..++.|.+||+..+... ... .....
T Consensus 75 ~~~~~~~~~~-~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~------------------------~~~-~~~~~ 127 (343)
T 1ri6_A 75 TFAAESALPG-SLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPV------------------------GVV-DVVEG 127 (343)
T ss_dssp EEEEEEECSS-CCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEE------------------------EEE-EEECC
T ss_pred eeccccccCC-CCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCccc------------------------ccc-ccccC
Confidence 334454443 78899999998 655554 45889999998521100 000 11112
Q ss_pred cccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCe
Q 010390 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHR 297 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 297 (512)
...+.+++|+|+++.+++++..++.|.+||+.+ ++...... .. ........+..++|+|+++++++++ .++.
T Consensus 128 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~ 201 (343)
T 1ri6_A 128 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP-AE-----VTTVEGAGPRHMVFHPNEQYAYCVNELNSS 201 (343)
T ss_dssp CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EE-----EECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc-cc-----cccCCCCCcceEEECCCCCEEEEEeCCCCE
Confidence 335888999999999988775789999999987 43321100 00 0111224578899999999776655 7899
Q ss_pred EEEEEcccCCCCc--eEeeeec----eeceeEEEEEECCCCCEEE-EecCCCCEEEEecCC--CCC-CCceeccccCCeE
Q 010390 298 IYLYNVLQLDKGP--IQHFSGC----RIESFYVKSEICPNASHIL-SGSSDGNAYVWQVNK--PQA-DPIKLKSHDGEVT 367 (512)
Q Consensus 298 i~i~d~~~~~~~~--~~~~~~~----~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iw~~~~--~~~-~~~~~~~h~~~v~ 367 (512)
|.+||+....... ....... .....+..++|+|++++|+ ++..++.|.+|++.. +.. ....+..+. .+.
T Consensus 202 i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~ 280 (343)
T 1ri6_A 202 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPR 280 (343)
T ss_dssp EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCC
T ss_pred EEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccc
Confidence 9999985422221 2222211 1123455799999998886 555789999999983 221 122233333 388
Q ss_pred EEEeCCCCCCeEEEEe-CCCcEEEEeC--CCCcc
Q 010390 368 AVNWCPNEAGKIVTSS-DDYTVRLWSL--ENSRC 398 (512)
Q Consensus 368 ~v~~~~~~~~~l~s~~-~dg~i~vwd~--~~~~~ 398 (512)
+++|+|++ .+|++++ .|+.|.+|++ .+++.
T Consensus 281 ~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 281 GFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp CEEECTTS-SEEEEECTTTCEEEEEEEETTTTEE
T ss_pred eEEECCCC-CEEEEecCCCCeEEEEEEcCCCcee
Confidence 99999999 6676666 6899999955 45543
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=2.5e-24 Score=196.64 Aligned_cols=260 Identities=10% Similarity=0.058 Sum_probs=188.2
Q ss_pred EeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CeeeecccC
Q 010390 70 VSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK-KKCTGALMG 148 (512)
Q Consensus 70 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~ 148 (512)
.++.|+.|++||+.++. ...+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......
T Consensus 17 ~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~ 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK--------------MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG 81 (297)
T ss_dssp -CCCCEEEEEEETTTTE--------------EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT
T ss_pred CCCcceeEEEEeCCCCc--------------eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc
Confidence 35678999999997653 334556889999999999999999886 78999999999 877766665
Q ss_pred c-CCCEEEEEeeCCCCCeEEEEe--CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 149 H-TGSIKSLCSHPTNSDILVSGS--RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 149 h-~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
+ ...+.+++|+|++ .+|++++ .++...+|.+....... ..+ .....+..
T Consensus 82 ~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~--------------------------~~~-~~~~~~~~ 133 (297)
T 2ojh_A 82 FATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTP--------------------------RLM-TKNLPSYW 133 (297)
T ss_dssp TCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCC--------------------------EEC-CSSSSEEE
T ss_pred cccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCce--------------------------EEe-ecCCCccc
Confidence 5 3678999999998 7888888 34556666553221110 011 11224888
Q ss_pred EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcc
Q 010390 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVL 304 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 304 (512)
++|+|+++.+++++..++.+.+|+++....... ....+...+.++.|+|++++|+.++ .++.+++|++.
T Consensus 134 ~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 134 HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET----------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp EEECTTSSEEEEEEEETTEEEEEEEETTTCCEE----------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eEECCCCCEEEEEECCCCceEEEEEECCCCcce----------EcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence 999999999987777899999998653222111 2344556789999999999888766 58999999985
Q ss_pred cCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-----------CCEEEEecCCCCCC-CceeccccCCeEEEEeC
Q 010390 305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-----------GNAYVWQVNKPQAD-PIKLKSHDGEVTAVNWC 372 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----------g~i~iw~~~~~~~~-~~~~~~h~~~v~~v~~~ 372 (512)
.. ......+..+. ..+..++|+|++++|++++.+ +.|++||+.+++.. +..+.+|...+.+++|+
T Consensus 204 ~~-~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 280 (297)
T 2ojh_A 204 VD-GSSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS 280 (297)
T ss_dssp TT-SSCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred CC-CCCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence 32 22334443332 456779999999999888765 56999999876542 22344788899999999
Q ss_pred CCCCCeEEEEeCCC
Q 010390 373 PNEAGKIVTSSDDY 386 (512)
Q Consensus 373 ~~~~~~l~s~~~dg 386 (512)
|++ .+|++++.|.
T Consensus 281 pdg-~~l~~~~~~~ 293 (297)
T 2ojh_A 281 PDG-DEFAYVRYFP 293 (297)
T ss_dssp TTS-SEEEEEEECC
T ss_pred CCC-CEEEEEEecc
Confidence 999 7777776543
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=2.6e-24 Score=230.13 Aligned_cols=314 Identities=8% Similarity=0.022 Sum_probs=218.3
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCC------CcEEEEECCCCCCccccccccccccceeccccCCCcE------
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDED------GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAI------ 111 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V------ 111 (512)
..+.+|.+.+.+++| ||||++||+++.+ ..|++||+.++. ...+..|...+
T Consensus 46 ~~lt~~~~~v~~~~~---SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--------------~~~lt~~~~~~~~~~~~ 108 (1045)
T 1k32_A 46 RKIVSNLGVINNARF---FPDGRKIAIRVMRGSSLNTADLYFYNGENGE--------------IKRITYFSGKSTGRRMF 108 (1045)
T ss_dssp EEEECSSSEEEEEEE---CTTSSEEEEEEEESTTCCEEEEEEEETTTTE--------------EEECCCCCEEEETTEEC
T ss_pred EEeeeCCCcccCeEE---CCCCCEEEEEEeeccCCCCCeEEEEECCCCC--------------eEEcccCCCcccccccc
Confidence 345678888888888 9999999988543 479999987652 45677888888
Q ss_pred -EEEEEecCCCEEEEEeCC------CcEEEEeCCCCeeee----------------------------------------
Q 010390 112 -FDLCWIKEDTNILTASGD------QTIKIWDAEKKKCTG---------------------------------------- 144 (512)
Q Consensus 112 -~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~---------------------------------------- 144 (512)
..++|+|||+.+++++.+ ..|.+|++.+++...
T Consensus 109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 999999999977777654 357888876654321
Q ss_pred ---------cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC-CCCCccccceeeecccccccccc-------
Q 010390 145 ---------ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS-SPKSNCAESFVFSSAVVKGAHLL------- 207 (512)
Q Consensus 145 ---------~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------- 207 (512)
.+.+|...+.++.|+++ .++++++.|+.+.+|.+.... ...............+.+.+...
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~ 266 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGS 266 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTE
T ss_pred EECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCE
Confidence 12346667788888875 577788888999999865321 11111110000011111111100
Q ss_pred -----cccccceecc-----------cccccEEEEEEe-ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390 208 -----SQSKRVSRRK-----------AASMSITSVLYL-KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 208 -----~~~~~~~~~~-----------~~~~~v~~~~~~-~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
........+. .+...+.+++|+ |+++.+++++ ++.|.+|+...+.... .
T Consensus 267 i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~------------~ 332 (1045)
T 1k32_A 267 IYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLK------------V 332 (1045)
T ss_dssp EEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEE------------C
T ss_pred EEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEE------------c
Confidence 0001111111 134468999999 9999998865 8899999998765432 2
Q ss_pred ccccc-CeeEEEeCCCCCEEEEEecCCeEE-EEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390 271 ETRLH-GISSLSQDSNGVFLTASCMDHRIY-LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 271 ~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~ 348 (512)
..+.. .+..++|+ +|+.|+.++.++.+. +||+.... ...+..+ ...+..++|+|+|++|++++.++.|++||
T Consensus 333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~---~~~l~~~--~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK---AEKFEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC---EEECCCC--CCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC---ceEecCC--ccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 23334 68899999 999999988888888 88975432 2233322 24567899999999999999999999999
Q ss_pred cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC----------CcEEEEeCCCCcc
Q 010390 349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD----------YTVRLWSLENSRC 398 (512)
Q Consensus 349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d----------g~i~vwd~~~~~~ 398 (512)
+.+++. .....+|.+.+.+++|+||+ ++|++++.+ +.|++||+.+++.
T Consensus 407 ~~tg~~-~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~ 464 (1045)
T 1k32_A 407 LETGKP-TVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464 (1045)
T ss_dssp TTTCCE-EEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred CCCCce-EEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence 988765 34555888999999999999 788877764 4999999998873
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=3.1e-24 Score=221.54 Aligned_cols=309 Identities=9% Similarity=0.001 Sum_probs=196.0
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC---cEEEEEEecCCCEEEEEe
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN---AIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~ 127 (512)
..+.+++| +|||+++++ +.||.|++||+.+++. ...+..|.. .|.+++|||||++|++++
T Consensus 17 ~~~~~~~~---spdg~~~~~-~~dg~i~~~d~~~g~~-------------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~ 79 (723)
T 1xfd_A 17 IHDPEAKW---ISDTEFIYR-EQKGTVRLWNVETNTS-------------TVLIEGKKIESLRAIRYEISPDREYALFSY 79 (723)
T ss_dssp CCCCCCCB---SSSSCBCCC-CSSSCEEEBCGGGCCC-------------EEEECTTTTTTTTCSEEEECTTSSEEEEEE
T ss_pred ccccccEE---cCCCcEEEE-eCCCCEEEEECCCCcE-------------EEEeccccccccccceEEECCCCCEEEEEe
Confidence 34677778 999998776 6899999999987743 333444544 499999999999999987
Q ss_pred CC---------CcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 128 GD---------QTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 128 ~d---------g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
.+ +.|.+||+.+++. +.....|...+..++|+|++ +.|+.++. +.|++||+.+++..........
T Consensus 80 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~-- 155 (723)
T 1xfd_A 80 NVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE-- 155 (723)
T ss_dssp SCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBT--
T ss_pred cCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCC--
Confidence 74 7788999998875 22233455568899999998 78888776 7999999987654321100000
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC---------------------------------C
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN---------------------------------S 243 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d---------------------------------g 243 (512)
.....+.. ..+ ........+.++.|+|||+.|+++...+ .
T Consensus 156 --~~~~~g~~----~~v-~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 228 (723)
T 1xfd_A 156 --GVIYNGLS----DWL-YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI 228 (723)
T ss_dssp --TTEEEEEC----CHH-HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred --CceECccc----cee-EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence 00000000 000 0000012347899999999999876432 1
Q ss_pred eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec----CCeEEEEEcccCCCCceEeeeecee
Q 010390 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM----DHRIYLYNVLQLDKGPIQHFSGCRI 319 (512)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~ 319 (512)
.|++||+.+++.......+. ....+...+..++|+|||++|++... +..|++||+.+... ...+....
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~- 300 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPD-----DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC--TKKHEDES- 300 (723)
T ss_dssp EEEEEESSSSCCCEECCCCC-----CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE--EEEEEEEC-
T ss_pred EEEEEECCCCceeEEeeCCc-----cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc--eEEEEecc-
Confidence 78899988776432221110 12223566899999999998877653 35799999876432 22221111
Q ss_pred ceeE----EEEEECCCCCEEEE--ecCCC------CEEEEe-cCCCCC-CCceeccccCCeEE-EEeCCCCCCeEEEEeC
Q 010390 320 ESFY----VKSEICPNASHILS--GSSDG------NAYVWQ-VNKPQA-DPIKLKSHDGEVTA-VNWCPNEAGKIVTSSD 384 (512)
Q Consensus 320 ~~~~----~~~~~s~~~~~l~~--g~~dg------~i~iw~-~~~~~~-~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~ 384 (512)
...+ ..++|+|||+.|+. +..++ .|++|| ...+.. ....+..+...+.. ++|+|++ +.|+..+.
T Consensus 301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~ 379 (723)
T 1xfd_A 301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG-NKIYFLST 379 (723)
T ss_dssp SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT-TEEEEEES
T ss_pred CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC-CEEEEEEc
Confidence 1111 25799999997765 44566 466777 333330 02334333444554 6999999 67765554
Q ss_pred -C--CcEEEEeCCCC
Q 010390 385 -D--YTVRLWSLENS 396 (512)
Q Consensus 385 -d--g~i~vwd~~~~ 396 (512)
+ +.+++|++...
T Consensus 380 ~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 380 EDLPRRRQLYSANTV 394 (723)
T ss_dssp SSCTTCCEEEEECSS
T ss_pred CCCCcceEEEEEeCC
Confidence 4 88999998753
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=5.2e-23 Score=212.99 Aligned_cols=285 Identities=9% Similarity=0.056 Sum_probs=202.1
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI 132 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 132 (512)
+.+++| ||||++|++++. +.|++||+.++.. .....+..|...+..++|+|||++|++++ ++.|
T Consensus 111 v~~~~~---SpDg~~l~~~~~-~~i~~~d~~~~~~-----------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i 174 (741)
T 2ecf_A 111 IVDYQW---SPDAQRLLFPLG-GELYLYDLKQEGK-----------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNL 174 (741)
T ss_dssp SCCCEE---CTTSSEEEEEET-TEEEEEESSSCST-----------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEE
T ss_pred cceeEE---CCCCCEEEEEeC-CcEEEEECCCCCc-----------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcE
Confidence 677777 999999999986 8999999987610 01445667888999999999999999887 4689
Q ss_pred EEEeCCCCeeeecccCcCCC----------------EEEEEeeCCCCCeEEEEeCCC-----------------------
Q 010390 133 KIWDAEKKKCTGALMGHTGS----------------IKSLCSHPTNSDILVSGSRDG----------------------- 173 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~h~~~----------------v~~l~~~~~~~~~l~s~~~dg----------------------- 173 (512)
++||+.+++.......+... +.+++|+|++ +.|++++.|+
T Consensus 175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 99999998876655544432 4779999998 7777776655
Q ss_pred ----------cEEEEeCCC-CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee--
Q 010390 174 ----------SFAIWDLRC-KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA-- 240 (512)
Q Consensus 174 ----------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~-- 240 (512)
.|.+||+.+ ++..... ....+...+..++| |+++.+++++.
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~-pDg~~l~~~~~~~ 307 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQWID-------------------------LGKEQDIYLARVNW-RDPQHLSFQRQSR 307 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEEEC-------------------------CCSCSSEEEEEEEE-EETTEEEEEEEET
T ss_pred CCCCCCCCeeEEEEEECCCCCceEEec-------------------------CCCCcceEEEEEEe-CCCCEEEEEEecc
Confidence 677788765 4321100 00135668999999 99999987654
Q ss_pred --cCCeEEEEeccCccceecccCCCcccccccccccc----CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee
Q 010390 241 --VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH----GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF 314 (512)
Q Consensus 241 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 314 (512)
.+..|.+||+.+++..... ..+.. .+..++|+|||+++++++.+|.+++|.+... .. ...+
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~~-----------~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-~~-~~~l 374 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVLA-----------HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-GK-AAAL 374 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEEE-----------EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-SC-EEES
T ss_pred cCCeEEEEEEECCCCceEEEE-----------EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-CC-eeee
Confidence 3568999999987654321 11111 3568999999999999999998888876422 22 4444
Q ss_pred eeceeceeEEEE-EECCCCCEEE-EecCCC--CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe-CC---C
Q 010390 315 SGCRIESFYVKS-EICPNASHIL-SGSSDG--NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-DD---Y 386 (512)
Q Consensus 315 ~~~~~~~~~~~~-~~s~~~~~l~-~g~~dg--~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~d---g 386 (512)
..+. ..+..+ .|+|+++.|+ +++.++ .++||++.........+.. ...+..++|+||+ ++|+... .. .
T Consensus 375 ~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg-~~l~~~~~~~~~p~ 450 (741)
T 2ecf_A 375 THGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNA-SVYVDSWSNNSTPP 450 (741)
T ss_dssp CCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTS-SEEEEEEEETTEEE
T ss_pred eecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCC-CEEEEEecCCCCCC
Confidence 4332 234455 5999998775 455555 8999998753332345544 6678999999999 5655543 32 5
Q ss_pred cEEEEeCCCCc
Q 010390 387 TVRLWSLENSR 397 (512)
Q Consensus 387 ~i~vwd~~~~~ 397 (512)
.+.+|+...+.
T Consensus 451 ~~~l~~~~~~~ 461 (741)
T 2ecf_A 451 QIELFRANGEK 461 (741)
T ss_dssp EEEEEETTSCE
T ss_pred eEEEEEcCCCe
Confidence 78999986553
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=7.6e-24 Score=217.92 Aligned_cols=308 Identities=11% Similarity=0.062 Sum_probs=193.9
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCC--ccccccccccc---cceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLP--SFACHRENAEK---ARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~--~~~~~~~~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
+..+.| . |+.+++++.+| | +||+.+++. ........... ..-.....+...|.+++|+|| ..++.+.
T Consensus 28 ~~~~~w---~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~ 99 (706)
T 2z3z_A 28 VVGLQW---M--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT 99 (706)
T ss_dssp CTTCEE---E--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE
T ss_pred CCCCcC---c--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE
Confidence 567788 5 56677777787 8 999987754 11100000000 000000112257999999999 6666553
Q ss_pred CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC-----CCCCCCccccceeeeccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC-----KSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~ 202 (512)
++.|++||+.+++.... ..+...+.+++|+|++ +.|+.+ .|+.|++||+.+ ++.......... ....
T Consensus 100 -~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~----~~~~ 171 (706)
T 2z3z_A 100 -QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE----TLVY 171 (706)
T ss_dssp -TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT----TEEE
T ss_pred -CCEEEEEECCCCceEEc-cCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC----CeEc
Confidence 59999999998876544 3466778899999998 777775 679999999987 543221110000 0000
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEee--------------------------------cCCeEEEEec
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA--------------------------------VNSIVKFWDT 250 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~--------------------------------~dg~i~iwd~ 250 (512)
+ .. ....+...+.++.|+||++.+++++. .+..|.+||+
T Consensus 172 g-------~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 172 G-------QA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp S-------SC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred c-------cc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 0 00 01112234688999999999998652 2467999999
Q ss_pred cCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC-----eEEEEEcccCCCCceEeeeeceece---e
Q 010390 251 RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH-----RIYLYNVLQLDKGPIQHFSGCRIES---F 322 (512)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~---~ 322 (512)
.+++..... ....+...+.+++|+|||+.|++++.++ .|++||+.+.. ....+....... .
T Consensus 243 ~~~~~~~~~---------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 243 ATGKTVYLQ---------TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEP 311 (706)
T ss_dssp TTTEEEECC---------CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCC
T ss_pred CCCceEeec---------cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECc
Confidence 887654321 1123456689999999999999988775 89999987641 122221111111 1
Q ss_pred EEEEEECC--CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE-EEeCCCCCCeE-EEEeCCC----cEEEEeCC
Q 010390 323 YVKSEICP--NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA-VNWCPNEAGKI-VTSSDDY----TVRLWSLE 394 (512)
Q Consensus 323 ~~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~l-~s~~~dg----~i~vwd~~ 394 (512)
+..++|+| +|+++++++.|+.++||.++........+..|...+.. ++|+|++ ..| ++++.++ .|..||+.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKG-TRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTS-SEEEEEESSSCTTCBEEEEEETT
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCC-CEEEEEecCCCCceEEEEEEEcC
Confidence 24579999 99999999999999999887322223556677777877 7999999 555 4555555 67777877
Q ss_pred CCc
Q 010390 395 NSR 397 (512)
Q Consensus 395 ~~~ 397 (512)
+++
T Consensus 391 ~~~ 393 (706)
T 2z3z_A 391 GGK 393 (706)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=9.2e-23 Score=209.88 Aligned_cols=287 Identities=13% Similarity=0.106 Sum_probs=197.1
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
..|.+++| ||| +.++.+. ++.|++||+.++. ...+..+...+.+++|+|||++|+++ .|+
T Consensus 82 ~~v~~~~~---spd-~~~~~~~-~~~i~~~d~~~~~--------------~~~l~~~~~~~~~~~~SpdG~~la~~-~~~ 141 (706)
T 2z3z_A 82 FPSFRTLD---AGR-GLVVLFT-QGGLVGFDMLARK--------------VTYLFDTNEETASLDFSPVGDRVAYV-RNH 141 (706)
T ss_dssp CCCEEEEE---TTT-TEEEEEE-TTEEEEEETTTTE--------------EEEEECCTTCCTTCEECTTSSEEEEE-ETT
T ss_pred cCceeEEE---CCC-CeEEEEE-CCEEEEEECCCCc--------------eEEccCCcccccCCcCCCCCCEEEEE-ECC
Confidence 45777777 999 6565554 5999999997653 23344566778899999999999985 689
Q ss_pred cEEEEeCCC-----CeeeecccCcCCC--------------EEEEEeeCCCCCeEEEEe---------------------
Q 010390 131 TIKIWDAEK-----KKCTGALMGHTGS--------------IKSLCSHPTNSDILVSGS--------------------- 170 (512)
Q Consensus 131 ~i~iwd~~~-----~~~~~~~~~h~~~--------------v~~l~~~~~~~~~l~s~~--------------------- 170 (512)
.|++||+.+ ++.......+... +.++.|+|++ +.|++++
T Consensus 142 ~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred eEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCce
Confidence 999999998 7766555444443 4789999998 7888876
Q ss_pred ------------CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE
Q 010390 171 ------------RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA 238 (512)
Q Consensus 171 ------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 238 (512)
.+..|.+||+.+++.... .....+...+.+++|+|+++.++++
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~-------------------------~~~~~~~~~~~~~~~spdg~~l~~~ 275 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYL-------------------------QTGEPKEKFLTNLSWSPDENILYVA 275 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEEC-------------------------CCCSCTTCEEEEEEECTTSSEEEEE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEee-------------------------ccCCCCceeEeeEEEECCCCEEEEE
Confidence 346788888875532110 0111345679999999999998886
Q ss_pred eecCC-----eEEEEeccCccceecccCCCccccccccccccCeeEEEeCC--CCCEEEEEecCCeEEEEEcccCCCCce
Q 010390 239 SAVNS-----IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS--NGVFLTASCMDHRIYLYNVLQLDKGPI 311 (512)
Q Consensus 239 g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~ 311 (512)
+ .++ .|.+||+.+++........ ........+..+.|+| +|++++++..++.+++|++.. .....
T Consensus 276 ~-~~~~~~~~~v~~~d~~~g~~~~~~~~~------~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~-~~~~~ 347 (706)
T 2z3z_A 276 E-VNRAQNECKVNAYDAETGRFVRTLFVE------TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT-TGRLI 347 (706)
T ss_dssp E-ECTTSCEEEEEEEETTTCCEEEEEEEE------ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET-TSCEE
T ss_pred E-eCCCCCeeEEEEEECCCCceeeEEEEc------cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC-CCCEE
Confidence 5 354 8999999987322211000 0000111246789999 999999999999999998752 22333
Q ss_pred EeeeeceeceeEEE-EEECCCCCEEEEec-CCC----CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe-C
Q 010390 312 QHFSGCRIESFYVK-SEICPNASHILSGS-SDG----NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-D 384 (512)
Q Consensus 312 ~~~~~~~~~~~~~~-~~~s~~~~~l~~g~-~dg----~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~ 384 (512)
..+..+. ..+.. ++|+|+++.|+.++ .++ .|+.||+.++.. ..+ .|...+.+++|+|++ ++|+..+ .
T Consensus 348 ~~l~~~~--~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l-~~~~~~~~~~~spdg-~~l~~~~~~ 421 (706)
T 2z3z_A 348 RQVTKGE--WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT--KDL-TPESGMHRTQLSPDG-SAIIDIFQS 421 (706)
T ss_dssp EECCCSS--SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC--EES-CCSSSEEEEEECTTS-SEEEEEEEC
T ss_pred EecCCCC--eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc--eec-cCCCceEEEEECCCC-CEEEEEecC
Confidence 4443332 22444 79999998876544 444 566666665442 233 367789999999999 6666553 3
Q ss_pred C---CcEEEEeCCCCc
Q 010390 385 D---YTVRLWSLENSR 397 (512)
Q Consensus 385 d---g~i~vwd~~~~~ 397 (512)
+ +.|++||+.+++
T Consensus 422 ~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 422 PTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSCSCEEEEEESSSCE
T ss_pred CCCCcEEEEEECCCCe
Confidence 3 569999999886
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=3.9e-23 Score=192.61 Aligned_cols=272 Identities=9% Similarity=0.017 Sum_probs=191.7
Q ss_pred cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCC-cEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCee
Q 010390 66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQN-AIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKC 142 (512)
Q Consensus 66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~ 142 (512)
++|++++.++.|.+||..+++. +..+. ++.. .+..++|+|++++++ ++..++.|.+||+.+++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 68 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-------------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET 68 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-------------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE
T ss_pred cEEEEcCCCCeEEEEECCCCcE-------------EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe
Confidence 5789999999999999976532 33333 2222 478899999998765 555678999999999988
Q ss_pred eecccC-c----CCCEEEEEeeCCCCCeEEEEe------------CCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 143 TGALMG-H----TGSIKSLCSHPTNSDILVSGS------------RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 143 ~~~~~~-h----~~~v~~l~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
+..+.. + ...+.+++|+|++ ..++++. .++.|.+||+.+++...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------------------ 129 (337)
T 1pby_B 69 LGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK------------------ 129 (337)
T ss_dssp EEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE------------------
T ss_pred EeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEE------------------
Confidence 766652 1 2256789999988 6777775 57999999997543211
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (512)
.. .....+.+++|+|+++.++++ ++.|.+||+.+++......... . ...+.|+|+
T Consensus 130 ---------~~-~~~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~---------~---~~~~~~s~d 184 (337)
T 1pby_B 130 ---------AF-EAPRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQS---------W---EAETYAQPD 184 (337)
T ss_dssp ---------EE-ECCSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTT---------T---TTTTBCCCB
T ss_pred ---------EE-eCCCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccc---------c---CCCceeCCC
Confidence 11 112356788999999988875 6889999999877654321110 0 112367888
Q ss_pred CCEEEEEecCC------------------------eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390 286 GVFLTASCMDH------------------------RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 286 ~~~l~~~~~dg------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 341 (512)
+..++..+..+ .|.+||+.+.+.. ..........+..++|+|++++++++ +
T Consensus 185 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--C
Confidence 87665544322 4689998764332 22222223346679999999999888 7
Q ss_pred CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
+.|++||+.+++.. ..+. ....+.+++|+|++ ++|++++.|+.|++||+.+++.+..+
T Consensus 260 ~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 260 NVLESFDLEKNASI-KRVP-LPHSYYSVNVSTDG-STVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp SEEEEEETTTTEEE-EEEE-CSSCCCEEEECTTS-CEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCcCc-ceec-CCCceeeEEECCCC-CEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 89999999876542 3333 23568899999999 78888889999999999998876543
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.5e-22 Score=189.60 Aligned_cols=291 Identities=9% Similarity=0.058 Sum_probs=184.8
Q ss_pred CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCe--eeecccC
Q 010390 74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---DQTIKIWDAEKKK--CTGALMG 148 (512)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~ 148 (512)
++.|.+|+++..... .. ......+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+..
T Consensus 15 ~~~i~v~~~d~~tg~---------~~-~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~ 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKT---------LT-NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA 83 (347)
T ss_dssp CCEEEEEEEETTTTE---------EE-EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCEEEEEEcCCCCe---------EE-EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec
Confidence 456888877542110 01 112234556778899999999 655544 6899999997765 3444455
Q ss_pred cCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEE
Q 010390 149 HTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVL 227 (512)
Q Consensus 149 h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (512)
+...+..++|+|++ ++|++++ .++.|.+|++......... .... ... ... ........+.+++
T Consensus 84 ~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~------~~~~--~~~------~~p-~~~~~~~~~~~~~ 147 (347)
T 3hfq_A 84 PGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLT------DTVQ--HSG------HGP-RPEQDGSHIHYTD 147 (347)
T ss_dssp ESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEE------EEEE--CCC------CCS-STTCSSCCEEEEE
T ss_pred CCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeec------ceee--cCC------CCC-CccccCCCceEEE
Confidence 67788999999998 6666666 7899999999642211100 0000 000 000 0011234688999
Q ss_pred EeecCCEEEEEeecCCeEEEEecc-CccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEccc
Q 010390 228 YLKDEVSIATASAVNSIVKFWDTR-NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQ 305 (512)
Q Consensus 228 ~~~~~~~l~~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~ 305 (512)
|+|+++ +++++..++.|.+||+. +++...... ........+..++|+|+|++|+++ ..++.|.+|++..
T Consensus 148 ~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~--------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 148 LTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSV--------LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp ECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEE--------EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeee--------EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 999999 77667678899999998 333221100 011112356789999999976664 5678999999864
Q ss_pred CCCC--ceEeeeecee----ceeEEEEEECCCCCEE-EEecCCCCEEEEecCCCC--CCCceeccccCCeEEEEeCCCCC
Q 010390 306 LDKG--PIQHFSGCRI----ESFYVKSEICPNASHI-LSGSSDGNAYVWQVNKPQ--ADPIKLKSHDGEVTAVNWCPNEA 376 (512)
Q Consensus 306 ~~~~--~~~~~~~~~~----~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~ 376 (512)
.... ....+..... ...+..++|+|+|++| ++...++.|.+|++.... .....+..+...+.+++|+|++
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg- 297 (347)
T 3hfq_A 219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE- 297 (347)
T ss_dssp TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS-
T ss_pred CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC-
Confidence 2221 1222222111 1346779999999987 555668999999997322 1123344556678999999999
Q ss_pred CeEEEEeC-CCcEEEE--eCCCCccccc
Q 010390 377 GKIVTSSD-DYTVRLW--SLENSRCSSM 401 (512)
Q Consensus 377 ~~l~s~~~-dg~i~vw--d~~~~~~~~~ 401 (512)
++|++++. ++.|.+| |..+++....
T Consensus 298 ~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 298 AFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred CEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 77776664 5899999 5566765543
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.6e-22 Score=207.20 Aligned_cols=305 Identities=10% Similarity=0.031 Sum_probs=192.3
Q ss_pred eecCCccC---CcceEEEEEecCCCcEEEEeeCC---------CcEEEEECCCCCCccccccccccccceeccccCCCcE
Q 010390 44 VEHHGEET---PPLAVSFCKTSKNSHIFAVSDED---------GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAI 111 (512)
Q Consensus 44 ~~~~gh~~---~v~~v~~~~~s~~~~~latg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 111 (512)
..+.+|.. .|.+++| ||||++||+++.+ +.|.+||+.++.. ..+....+|...+
T Consensus 51 ~~~~~~~~~~~~v~~~~~---SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----------~~l~~~~~~~~~~ 116 (723)
T 1xfd_A 51 VLIEGKKIESLRAIRYEI---SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-----------QSLDPPEVSNAKL 116 (723)
T ss_dssp EEECTTTTTTTTCSEEEE---CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-----------EECCCTTCCSCCC
T ss_pred EEeccccccccccceEEE---CCCCCEEEEEecCccceeecceeeEEEEECCCCce-----------EeccCCccccccc
Confidence 34445554 4888888 9999999998764 7888999987643 1233344566678
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCE------------------EEEEeeCCCCCeEEEEeCCC
Q 010390 112 FDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSI------------------KSLCSHPTNSDILVSGSRDG 173 (512)
Q Consensus 112 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v------------------~~l~~~~~~~~~l~s~~~dg 173 (512)
..++|+|||++|++++. +.|++||+.+++.......+...+ .+++|+|++ +.|++++.|+
T Consensus 117 ~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~ 194 (723)
T 1xfd_A 117 QYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAIND 194 (723)
T ss_dssp SBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEEC
T ss_pred cccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECC
Confidence 99999999999999876 789999999988766555444333 789999998 7777776543
Q ss_pred ----------------------------------cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc
Q 010390 174 ----------------------------------SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219 (512)
Q Consensus 174 ----------------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (512)
.|++||+.+++....... ......+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~---------------------~~~~~~~ 253 (723)
T 1xfd_A 195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP---------------------PDDPRMR 253 (723)
T ss_dssp TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC---------------------CCCGGGS
T ss_pred CccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC---------------------CccCCCc
Confidence 445555443332110000 0011123
Q ss_pred cccEEEEEEeecCCEEEEEeec---CCeEEEEeccCccceecccCCCccccccccccccCe----eEEEeCCCCCEEEE-
Q 010390 220 SMSITSVLYLKDEVSIATASAV---NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI----SSLSQDSNGVFLTA- 291 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~l~~- 291 (512)
...+.+++|+||++.+++.... +..|.+||+.+++..... ...+...+ ..++|+|||+.|+.
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~----------~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH----------EDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE----------EEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE----------EeccCCEEeccCCCceEcCCCCeEEEE
Confidence 5678999999999988665432 357999999887654321 11112222 37899999997765
Q ss_pred -EecCC------eEEEEEc-ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCC-CCcee
Q 010390 292 -SCMDH------RIYLYNV-LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQA-DPIKL 359 (512)
Q Consensus 292 -~~~dg------~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~-~~~~~ 359 (512)
+..++ .|.+||+ ..........+.... ......++|+|+|+.|+..+.+ +.++||++..... ....+
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l 402 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCL 402 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCS
T ss_pred EecccCCCcceeEEEEEeccCCCCccceeEeecCC-eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCccee
Confidence 44666 5666773 332200022222111 1112236899999999765544 7899999875432 22333
Q ss_pred cc---ccCCeEEEEeCCCCCCeEEE-EeCCC--cEEEEeCCCCc
Q 010390 360 KS---HDGEVTAVNWCPNEAGKIVT-SSDDY--TVRLWSLENSR 397 (512)
Q Consensus 360 ~~---h~~~v~~v~~~~~~~~~l~s-~~~dg--~i~vwd~~~~~ 397 (512)
.. |...+..++|+|++ ++|+. .+..+ ...+++..++.
T Consensus 403 ~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~p~~~~~~~~~~~ 445 (723)
T 1xfd_A 403 SCDLVENCTYFSASFSHSM-DFFLLKCEGPGVPMVTVHNTTDKK 445 (723)
T ss_dssp STTSSSSCCCCEEEECTTS-SEEEEECCSSSSCCEEEEETTTCC
T ss_pred cccccCCCCeEEEEECCCC-CEEEEEccCCCCCeEEEEECCCCC
Confidence 33 67778999999999 55554 33333 23445554443
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=4.1e-22 Score=186.17 Aligned_cols=283 Identities=8% Similarity=0.025 Sum_probs=182.7
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCC-CcEEEEECC--CCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDED-GYVSLFDSR--RKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL 124 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 124 (512)
.|...+.+++| +|+|++|++++.+ +.|.+|+++ ++.. ..+..+..+. .+..++|+|++++|+
T Consensus 35 ~~~~~~~~~~~---spdg~~l~~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~s~dg~~l~ 99 (343)
T 1ri6_A 35 DVPGQVQPMVV---SPDKRYLYVGVRPEFRVLAYRIAPDDGAL-----------TFAAESALPG-SLTHISTDHQGQFVF 99 (343)
T ss_dssp ECSSCCCCEEE---CTTSSEEEEEETTTTEEEEEEECTTTCCE-----------EEEEEEECSS-CCSEEEECTTSSEEE
T ss_pred ecCCCCceEEE---CCCCCEEEEeecCCCeEEEEEecCCCCce-----------eeccccccCC-CCcEEEEcCCCCEEE
Confidence 46677888888 9999998888876 999999987 3321 2233344333 788999999999887
Q ss_pred EEeC-CCcEEEEeCC---CCeeeecccCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 125 TASG-DQTIKIWDAE---KKKCTGALMGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 125 s~~~-dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
+++. ++.|.+||+. ..+....+..+ ..+.+++|+|++ +.+++++ .++.|.+||+.+.........
T Consensus 100 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-------- 169 (343)
T 1ri6_A 100 VGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDP-------- 169 (343)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEE--------
T ss_pred EEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeecc--------
Confidence 6665 8899999994 44455555544 468899999998 6666665 889999999975221110000
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC--ccceecccCCCccccccccccccCe
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN--LKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
..........+..++|+|+++.+++++..++.|.+||++. +........... . ........+
T Consensus 170 -------------~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~-~--~~~~~~~~~ 233 (343)
T 1ri6_A 170 -------------AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM-P--ENFSDTRWA 233 (343)
T ss_dssp -------------EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS-C--TTCCSCCCE
T ss_pred -------------cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecccc-C--ccccccCCc
Confidence 0001112346788999999998888776799999999964 222111000000 0 000112346
Q ss_pred eEEEeCCCCCEEEEEe-cCCeEEEEEcccCC--CCceEeeeeceeceeEEEEEECCCCCEEEEec-CCCCEEEEecC--C
Q 010390 278 SSLSQDSNGVFLTASC-MDHRIYLYNVLQLD--KGPIQHFSGCRIESFYVKSEICPNASHILSGS-SDGNAYVWQVN--K 351 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~--~ 351 (512)
..++|+|++++|+++. .++.|.+||+.... ...+..+... ..+..++|+|++++|++++ .++.|.+|+++ +
T Consensus 234 ~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 234 ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred cceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 6899999999887554 78999999996321 1222222221 2256789999999888777 67999999665 3
Q ss_pred CCCC-CceeccccCCeEEEEeCCCC
Q 010390 352 PQAD-PIKLKSHDGEVTAVNWCPNE 375 (512)
Q Consensus 352 ~~~~-~~~~~~h~~~v~~v~~~~~~ 375 (512)
+... ...+.. .....+++|.++.
T Consensus 311 g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 311 GLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp TEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred ceeeEcccccc-CCCCeeEEEEccc
Confidence 3221 112222 2345566666543
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=6.3e-22 Score=184.04 Aligned_cols=253 Identities=8% Similarity=0.055 Sum_probs=176.0
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeC-CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDE-DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
+...+ +++| +|||++|++++. ++.|.+||..++.. ....+..+.....+++|+|++++|+++.
T Consensus 39 ~~~~~-~~~~---s~dg~~l~~~~~~~~~i~~~d~~~~~~------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 102 (331)
T 3u4y_A 39 GYDFV-DTAI---TSDCSNVVVTSDFCQTLVQIETQLEPP------------KVVAIQEGQSSMADVDITPDDQFAVTVT 102 (331)
T ss_dssp CCCEE-EEEE---CSSSCEEEEEESTTCEEEEEECSSSSC------------EEEEEEECSSCCCCEEECTTSSEEEECC
T ss_pred cCCcc-eEEE---cCCCCEEEEEeCCCCeEEEEECCCCce------------eEEecccCCCCccceEECCCCCEEEEec
Confidence 34444 7777 999996666654 88999999987632 1334445556665599999999999655
Q ss_pred CCC---cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc-EEEEeCCCCCCCCCccccceeeecccccc
Q 010390 128 GDQ---TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS-FAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 128 ~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
.++ .|.+||+.+++.+..+..+ ....+++|+|++..++++...++. |.+|++..........
T Consensus 103 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~------------- 168 (331)
T 3u4y_A 103 GLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG------------- 168 (331)
T ss_dssp CSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-------------
T ss_pred CCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-------------
Confidence 553 8999999999988877644 467999999998556666667688 9999987543211000
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc---eecccCCCccccccccccccCeeEE
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA---QITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
.........+..++|+|+++.+++++..++.|.+||+.+++. ... ......+..+
T Consensus 169 ----------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~------------~~~~~~~~~~ 226 (331)
T 3u4y_A 169 ----------QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA------------VGTNNLPGTI 226 (331)
T ss_dssp ----------EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE------------EECSSCCCCE
T ss_pred ----------CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee------------ccCCCCCceE
Confidence 011122345789999999998888777789999999988775 322 1123567889
Q ss_pred EeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeec----e-eceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCC
Q 010390 281 SQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGC----R-IESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQ 353 (512)
Q Consensus 281 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~----~-~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~ 353 (512)
+|+|+|++|++++ .++.|.+||+.+.....+..+... . .......++|+|++++|+++ ..++.|.+||+....
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 9999999777665 578899999876443223322221 0 00111347999999988654 556799999997653
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=2e-22 Score=189.17 Aligned_cols=259 Identities=11% Similarity=0.103 Sum_probs=184.0
Q ss_pred CCcEEEEEEecCCCEEEEEeC-------CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390 108 QNAIFDLCWIKEDTNILTASG-------DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 180 (512)
...+..++|+|++++|++++. ++.|.+||..+++.+..+.. ...+..++|+|++..++++...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 457889999999999987774 56899999999988887764 3457889999998446666677899999999
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe-ecCCeEEEEeccCccceecc
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS-AVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g-~~dg~i~iwd~~~~~~~~~~ 259 (512)
.+++......... ...........+.+++|+|+++.+++++ ..++.|.+||..+++.....
T Consensus 119 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 119 KTGEVKGRLVLDD------------------RKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TTCCEEEEEESCC------------------CCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred CCCeeEEEEecCC------------------CccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 8765422111000 0000000112378899999999888766 35789999999987765432
Q ss_pred cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee--ceeceeEEEEEECCCCCEEEE
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG--CRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~ 337 (512)
..+...+..++|+|++++|++++.++.|.+||+.+... ...+.. ......+..++|+|+++++++
T Consensus 181 -----------~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 181 -----------QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp -----------CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred -----------cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 22334478899999999999999999999999866432 222221 112345667999999997766
Q ss_pred ecC-CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 338 GSS-DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 338 g~~-dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
++. ++.|.+||..+++.. ..+.... ..+++|+|++..++++...++.|.+||+.+++.+..
T Consensus 248 ~~~~~~~v~~~d~~~~~~~-~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNIL-AKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp EESSSSEEEEEETTTCCEE-EEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EeCCCCEEEEEECCCCcEE-EEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 654 589999999887653 3333222 256999999933555666799999999998876654
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=1.6e-21 Score=183.04 Aligned_cols=275 Identities=8% Similarity=0.045 Sum_probs=193.7
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeC-------CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDE-------DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
....+..+++ +|+|++|++++. ++.|.+||..+++. +..+.. ...+..++|+|+++
T Consensus 39 ~~~~~~~~~~---s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-------------~~~~~~-~~~~~~~~~s~dg~ 101 (353)
T 3vgz_A 39 VGKGAYEMAY---SQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-------------TQAIHN-DLKPFGATINNTTQ 101 (353)
T ss_dssp EESSEEEEEE---ETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-------------EEEEEE-SSCCCSEEEETTTT
T ss_pred hccCccceEE---CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-------------EEEEec-CCCcceEEECCCCC
Confidence 3445677777 999998888764 56899999987643 223322 34577899999999
Q ss_pred EEE-EEeCCCcEEEEeCCCCeeeecccCcCCC---------EEEEEeeCCCCCeEEEEe--CCCcEEEEeCCCCCCCCCc
Q 010390 122 NIL-TASGDQTIKIWDAEKKKCTGALMGHTGS---------IKSLCSHPTNSDILVSGS--RDGSFAIWDLRCKSSPKSN 189 (512)
Q Consensus 122 ~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~---------v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~ 189 (512)
+++ +...++.|.+||..+++.+..+..+... +.+++|+|++ +.+++++ .++.|.+||..+++...
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~~~-- 178 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKLKT-- 178 (353)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEEEE--
T ss_pred EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCceEE--
Confidence 665 4555799999999999888777654322 7889999998 5555444 57899999998654321
Q ss_pred cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390 190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA 269 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 269 (512)
....+...+.+++|+|+++.++++. .++.|.+||..+++........
T Consensus 179 -------------------------~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~------- 225 (353)
T 3vgz_A 179 -------------------------AIQNTGKMSTGLALDSEGKRLYTTN-ADGELITIDTADNKILSRKKLL------- 225 (353)
T ss_dssp -------------------------EECCCCTTCCCCEEETTTTEEEEEC-TTSEEEEEETTTTEEEEEEECC-------
T ss_pred -------------------------EecCCCCccceEEECCCCCEEEEEc-CCCeEEEEECCCCeEEEEEEcC-------
Confidence 1112334577899999999988865 6899999999988765443211
Q ss_pred ccccccCeeEEEeCCCCCEEEEEecC-CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE-ecCCCCEEEE
Q 010390 270 KETRLHGISSLSQDSNGVFLTASCMD-HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-GSSDGNAYVW 347 (512)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw 347 (512)
...+...+..++|+|+++++++++.+ +.|.+||+.+.+ .+..+.... ...++|+|+++++++ ...++.|.+|
T Consensus 226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN--ILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC--EEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEE
Confidence 11234457889999999987777654 999999986643 233333221 134899999996654 4468999999
Q ss_pred ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390 348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385 (512)
Q Consensus 348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 385 (512)
|..+++.. ..+.. ...+.+++|+|++ ++|+.+..+
T Consensus 300 d~~~~~~~-~~~~~-~~~~~~~~~s~dg-~~l~v~~~~ 334 (353)
T 3vgz_A 300 DAKSYKVV-KTFDT-PTHPNSLALSADG-KTLYVSVKQ 334 (353)
T ss_dssp ETTTTEEE-EEEEC-CSEEEEEEECTTS-CEEEEEEEC
T ss_pred ECCCCeEE-EEEec-CCCCCeEEEcCCC-CEEEEEEcc
Confidence 99887652 33333 3478999999999 655555544
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=6e-21 Score=179.67 Aligned_cols=306 Identities=9% Similarity=0.048 Sum_probs=190.9
Q ss_pred CCCcEEEEee----CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC----CcEEE
Q 010390 63 KNSHIFAVSD----EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD----QTIKI 134 (512)
Q Consensus 63 ~~~~~latg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~i~i 134 (512)
++..++++|+ .++.|.+|+++..... ...+... +...+..++|+|++++|++++.+ +.|.+
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~---------~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~ 79 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGE---------SLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSA 79 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCC---------EEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCC---------EEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEE
Confidence 3345666663 4568999987542110 1122223 66778889999999999998876 79999
Q ss_pred EeCCC--Ce--eeecccCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390 135 WDAEK--KK--CTGALMGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ 209 (512)
Q Consensus 135 wd~~~--~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
|++.. ++ .+.....+......+++ ++ .+|++++ .++.|.+|++............. . ..
T Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~--~-----------~~ 143 (361)
T 3scy_A 80 FAFDKEKGTLHLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPASDVI--E-----------FK 143 (361)
T ss_dssp EEEETTTTEEEEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCSEEE--E-----------CC
T ss_pred EEEeCCCCcEEEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccceeE--E-----------cc
Confidence 98765 43 33344445566777887 55 5555554 68899999997544322111000 0 00
Q ss_pred cccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc------eecccCCCccccccccccccCeeEEEeC
Q 010390 210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA------QITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 210 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
.........+...+.+++|+|+++.+++++..++.|.+|++..... ........ .........+..++|+
T Consensus 144 g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~s 219 (361)
T 3scy_A 144 GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE----AFKVAPGSGPRHLIFN 219 (361)
T ss_dssp CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE----EEECCTTCCEEEEEEC
T ss_pred CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc----ceecCCCCCCeEEEEc
Confidence 0000011122345788999999998888776789999999875442 10000000 0112223457889999
Q ss_pred CCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeece-eceeEEEEEECCCCCEEEEecC--CCCEEEEecCC--CCC-CC
Q 010390 284 SNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCR-IESFYVKSEICPNASHILSGSS--DGNAYVWQVNK--PQA-DP 356 (512)
Q Consensus 284 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~--dg~i~iw~~~~--~~~-~~ 356 (512)
|+|+++++++ .++.|.+||+.......+..+.... .......++|+|+|++|+++.. ++.|.+|++.. +.. ..
T Consensus 220 pdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 220 SDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp TTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred CCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence 9999888777 6899999998743222222222211 1123457999999999866655 48899999962 332 11
Q ss_pred ceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEE--eCCCCccccc
Q 010390 357 IKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLW--SLENSRCSSM 401 (512)
Q Consensus 357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vw--d~~~~~~~~~ 401 (512)
..+.. ...+.+++|+|++ ++|++++ .++.|.+| |..++++...
T Consensus 300 ~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 300 GYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred eEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 22222 4578899999999 7777766 67899996 5556765544
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=3.7e-22 Score=213.52 Aligned_cols=280 Identities=12% Similarity=0.044 Sum_probs=211.2
Q ss_pred ccCCcceEEEEEec-CCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC-cEEEEEEecCCCEEEEE
Q 010390 49 EETPPLAVSFCKTS-KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN-AIFDLCWIKEDTNILTA 126 (512)
Q Consensus 49 h~~~v~~v~~~~~s-~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s~ 126 (512)
|.+.+.+++| | |||++||+++ ++.|.+|+..++. ...+..|.. .+..++|+ ||+.|+++
T Consensus 294 ~~~~v~~~~~---S~pdG~~la~~~-~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~s-dg~~l~~~ 354 (1045)
T 1k32_A 294 SIPSKFAEDF---SPLDGDLIAFVS-RGQAFIQDVSGTY--------------VLKVPEPLRIRYVRRGGD-TKVAFIHG 354 (1045)
T ss_dssp ECGGGGEEEE---EECGGGCEEEEE-TTEEEEECTTSSB--------------EEECSCCSCEEEEEECSS-SEEEEEEE
T ss_pred cccccceeee---cCCCCCEEEEEE-cCEEEEEcCCCCc--------------eEEccCCCcceEEeeeEc-CCCeEEEE
Confidence 3446888888 9 9999999988 8899999987653 233566777 89999999 99999999
Q ss_pred eCCCcEE-EEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 127 SGDQTIK-IWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 127 ~~dg~i~-iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
+.++.+. +||+.+++..... +|...+..++|+|++ ..|++++.++.|++||+.+++...
T Consensus 355 s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~------------------ 414 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTV------------------ 414 (1045)
T ss_dssp ETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE------------------
T ss_pred ECCCceEEEEECCCCCceEec-CCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEE------------------
Confidence 8888888 9999887655444 788899999999998 899999999999999998654321
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecC---------CeEEEEeccCccceecccCCCccccccccccccC
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN---------SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
....|...+.+++|+|+++.+++++..+ +.|++||+.+++.. ....+...
T Consensus 415 ---------~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~------------~l~~~~~~ 473 (1045)
T 1k32_A 415 ---------IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF------------AATTENSH 473 (1045)
T ss_dssp ---------EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE------------ECSCSSSB
T ss_pred ---------eccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE------------EeeCCCcc
Confidence 2224667789999999999998876432 58999999887622 24445566
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCC------------------C-----------------------ceEeee
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDK------------------G-----------------------PIQHFS 315 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------~-----------------------~~~~~~ 315 (512)
+..++|+|+|++|+.++.++...+|+...... . .+..+.
T Consensus 474 ~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~ 553 (1045)
T 1k32_A 474 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 553 (1045)
T ss_dssp EEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS
T ss_pred cCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcC
Confidence 78899999999999999887777776432110 0 000111
Q ss_pred eceeceeEEEEEECCCCCEEEE-------------ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEE
Q 010390 316 GCRIESFYVKSEICPNASHILS-------------GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 316 ~~~~~~~~~~~~~s~~~~~l~~-------------g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 382 (512)
.....+..++++|+++++++ ......|.+||+.+++. ..+. ..+.+++|+||| +.|+++
T Consensus 554 --~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~---~~v~~~~~S~DG-~~l~~~ 625 (1045)
T 1k32_A 554 --VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV--TEVK---NNLTDLRLSADR-KTVMVR 625 (1045)
T ss_dssp --CCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE--EEEE---EEEEEEEECTTS-CEEEEE
T ss_pred --CCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcE--EEee---cCcceEEECCCC-CEEEEE
Confidence 11234667899999987875 12245688888877654 2333 568899999999 888888
Q ss_pred eCCCcEEEEeCCCCc
Q 010390 383 SDDYTVRLWSLENSR 397 (512)
Q Consensus 383 ~~dg~i~vwd~~~~~ 397 (512)
+.| .|++||+.+++
T Consensus 626 ~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 626 KDD-GKIYTFPLEKP 639 (1045)
T ss_dssp ETT-SCEEEEESSCT
T ss_pred cCC-cEEEEeCccCc
Confidence 877 79999998887
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.9e-21 Score=186.56 Aligned_cols=219 Identities=13% Similarity=0.122 Sum_probs=153.2
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccc--cccccceeccccCCCcEEEEEEecCCCEEE----
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRE--NAEKARISDWVAHQNAIFDLCWIKEDTNIL---- 124 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~---- 124 (512)
..+..+++ ++++.++++|+.+| |+||+............. ............|...|++++|+|++++|+
T Consensus 37 ~~~n~lav---s~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 37 ERSSLLAV---SNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp SCCBCEEE---ETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCccEEEE---ecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence 45677777 89999999999888 999886432110000000 000000111124667899999999999999
Q ss_pred EEeCCCcEEEEeCCCC--------e---eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 125 TASGDQTIKIWDAEKK--------K---CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~--------~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
+|+.|+.|+|||+.++ + .+..+.+|...|.+++|+|+++.+|++++.||+|++||++++..
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-------- 184 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-------- 184 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE--------
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc--------
Confidence 7889999999998664 1 24566779999999999998558999999999999999986521
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
......|...|.+++|+|++..+++ |+.||.|++||++ ++.......+.. ....|
T Consensus 185 -------------------~~~~~~~~~~v~~v~wspdg~~las-gs~dg~v~iwd~~-~~~~~~~~~~~~----~~~~~ 239 (434)
T 2oit_A 185 -------------------VCATLPSTVAVTSVCWSPKGKQLAV-GKQNGTVVQYLPT-LQEKKVIPCPPF----YESDH 239 (434)
T ss_dssp -------------------EEEEECGGGCEEEEEECTTSSCEEE-EETTSCEEEECTT-CCEEEEECCCTT----CCTTS
T ss_pred -------------------eeeccCCCCceeEEEEcCCCCEEEE-EcCCCcEEEEccC-CcccccccCCcc----cCCCC
Confidence 1122346778999999999999987 5589999999998 332222111100 01123
Q ss_pred ccCeeEEEeCCCCCEEEEEe-cCC------eEEEEEcccC
Q 010390 274 LHGISSLSQDSNGVFLTASC-MDH------RIYLYNVLQL 306 (512)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~-~dg------~i~i~d~~~~ 306 (512)
...|.++.|++++.++++.+ .+| .+++|++...
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 44799999999888776543 443 3899999764
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=5.4e-22 Score=181.14 Aligned_cols=240 Identities=11% Similarity=0.008 Sum_probs=171.3
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCC-CCCccccccccccccceeccccC-CCcEEEEEEecCCCE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRR-KLPSFACHRENAEKARISDWVAH-QNAIFDLCWIKEDTN 122 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~ 122 (512)
.+.+|...|.+++| +|||++|++++ ++.|++||+.+ +.. ......| ...|.+++|+|++++
T Consensus 36 ~~~~~~~~v~~~~~---spdg~~l~~~~-~~~i~~~d~~~~~~~-------------~~~~~~~~~~~~~~~~~spdg~~ 98 (297)
T 2ojh_A 36 VVWQTPELFEAPNW---SPDGKYLLLNS-EGLLYRLSLAGDPSP-------------EKVDTGFATICNNDHGISPDGAL 98 (297)
T ss_dssp EEEEESSCCEEEEE---CTTSSEEEEEE-TTEEEEEESSSCCSC-------------EECCCTTCCCBCSCCEECTTSSE
T ss_pred eeccCCcceEeeEE---CCCCCEEEEEc-CCeEEEEeCCCCCCc-------------eEeccccccccccceEECCCCCE
Confidence 34457888999999 99999999987 88999999987 543 2333344 478899999999999
Q ss_pred EEEEeC--CCcEEEE--eCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 123 ILTASG--DQTIKIW--DAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 123 l~s~~~--dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
|++++. ++.+.|| ++.+++ ...+..+ ..+..++|+|++..++++++.|+.+++|+++.....
T Consensus 99 l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~------------ 164 (297)
T 2ojh_A 99 YAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV------------ 164 (297)
T ss_dssp EEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC------------
T ss_pred EEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc------------
Confidence 999883 3445555 555554 3344433 358999999998444458888999999997532111
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccccccccCe
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
...+..+...+.++.|+|+++.+++++..++.+.+|+++. ..... ....+...+
T Consensus 165 --------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~ 219 (297)
T 2ojh_A 165 --------------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE-----------RITDSAYGD 219 (297)
T ss_dssp --------------EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE-----------ECCCCSEEE
T ss_pred --------------ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE-----------EEecCCccc
Confidence 1123345668899999999999988776689999998863 22222 233445678
Q ss_pred eEEEeCCCCCEEEEEecC-----------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390 278 SSLSQDSNGVFLTASCMD-----------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG 342 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 342 (512)
..++|+|++++|++++.+ +.|.+||+...+...+..+.++ ...+..++|+|++++|++++.+.
T Consensus 220 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 220 WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG--QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES--TTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCC--CcccccceECCCCCEEEEEEecc
Confidence 899999999999888765 5699999876544334433333 23455689999999998876653
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=5.5e-22 Score=199.15 Aligned_cols=273 Identities=9% Similarity=-0.010 Sum_probs=189.5
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeC-CCcEEEEECCCCCCccccccccccccceeccccCC-CcEEEEEEecCCCEEEEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDE-DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCWIKEDTNILTA 126 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~ 126 (512)
+..+|++|+| +|||++||+++. ||.+.||+++++. ...+..|. ..+..++|+|| +.++++
T Consensus 20 ~~~~~~~~~~---~~DG~~la~~s~~~g~~~lw~~~~g~--------------~~~lt~~~~~~~~~~~~spd-~~l~~~ 81 (582)
T 3o4h_A 20 IAVEKYSLQG---VVDGDKLLVVGFSEGSVNAYLYDGGE--------------TVKLNREPINSVLDPHYGVG-RVILVR 81 (582)
T ss_dssp HHSCEEEEEE---EETTTEEEEEEEETTEEEEEEEETTE--------------EEECCSSCCSEECEECTTCS-EEEEEE
T ss_pred hccchheeec---CCCCCeEEEEEccCCceeEEEEcCCC--------------cEeeecccccccccccCCCC-eEEEEe
Confidence 3667999999 999999999876 9999999985542 33344555 68999999999 777776
Q ss_pred eC---CCcEEEEeCCC---CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 127 SG---DQTIKIWDAEK---KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 127 ~~---dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
+. +....||.+.. +... .+.... .+...+|+|++...+++.+.++.+.+||+.+++...
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~------------- 146 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE------------- 146 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-------------
T ss_pred ccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-------------
Confidence 64 45556654432 2222 332222 344668888885555555555666799987653211
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecC----CeEEEEeccCccceecccCCCccccccccccccC
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN----SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
+..+.. .+++|+|||+.+++++. + +.|++||+.+++.. .+..+...
T Consensus 147 ---------------l~~~~~--~~~~~spDG~~la~~~~-~~~~~~~i~~~d~~~g~~~------------~l~~~~~~ 196 (582)
T 3o4h_A 147 ---------------LARLPG--FGFVSDIRGDLIAGLGF-FGGGRVSLFTSNLSSGGLR------------VFDSGEGS 196 (582)
T ss_dssp ---------------EEEESS--CEEEEEEETTEEEEEEE-EETTEEEEEEEETTTCCCE------------EECCSSCE
T ss_pred ---------------eecCCC--ceEEECCCCCEEEEEEE-cCCCCeEEEEEcCCCCCce------------EeecCCCc
Confidence 111112 78999999999997653 4 67999999877654 24455566
Q ss_pred eeEEEeCCCCCEEEEEecCC--eEEEEEcccCCCCceEeeeecee--ce----eEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390 277 ISSLSQDSNGVFLTASCMDH--RIYLYNVLQLDKGPIQHFSGCRI--ES----FYVKSEICPNASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~--~~----~~~~~~~s~~~~~l~~g~~dg~i~iw~ 348 (512)
+..++|+|||+.|+++..++ .|++||+.+.... .+..+.. .. .....+|+|||.++++++.++.+++|+
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE---DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE---ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE---EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 89999999999999888888 8999998764322 2332211 11 112234999998889999999999999
Q ss_pred cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC---cEEEEeCCC
Q 010390 349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY---TVRLWSLEN 395 (512)
Q Consensus 349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg---~i~vwd~~~ 395 (512)
+ ++.. ..+.+.|.+++|+ ++ .++++++.+. .+.+||..+
T Consensus 274 ~--g~~~----~~~~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 274 D--GERV----EAPQGNHGRVVLW-RG-KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp T--TEEE----CCCSSEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC
T ss_pred E--CCee----ccCCCceEEEEec-CC-EEEEEEcCCCCCCeEEEEcCCC
Confidence 9 3321 1345679999999 88 7888887774 477777764
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=2.4e-21 Score=181.43 Aligned_cols=279 Identities=8% Similarity=0.012 Sum_probs=183.7
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcEEEEEEecCCCEEE-EEeCCCcEEEEeCCC
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCWIKEDTNIL-TASGDQTIKIWDAEK 139 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~ 139 (512)
++++.++++++.++.|.+||..+++. +..+..+. ..+..++|+|++++++ ++..++.|.+||+.+
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTV-------------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEE-------------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcE-------------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC
Confidence 88999999999999999999977632 33333322 2577899999998765 555689999999999
Q ss_pred CeeeecccCcC------CCEEEEEeeCCCCCeEEEEeCC------------CcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 140 KKCTGALMGHT------GSIKSLCSHPTNSDILVSGSRD------------GSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 140 ~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
++.+..+..+. ..+.+++|+|++ ++|++++.+ +.|.+||+.+++.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------------ 141 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV------------ 141 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS------------
T ss_pred CcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCcccccee------------
Confidence 98877665322 237889999998 777777755 89999999764321110
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc-------------c
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS-------------S 268 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------~ 268 (512)
....+...+.+++|+|+++ ++++ ++.|.+||..+++............. .
T Consensus 142 -------------~~~~~~~~~~~~~~s~dg~-l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 142 -------------RTFPMPRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 204 (349)
T ss_dssp -------------EEEECCSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCC
T ss_pred -------------eeccCCCcccceeECCCCc-EEEc---cCcEEEEeCCCCceeccccccccCCccccCccceeeecCC
Confidence 0111233578899999999 6553 34499999988776543321110000 0
Q ss_pred cccccccCeeEEEeCCCCCE-----------EEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEE
Q 010390 269 AKETRLHGISSLSQDSNGVF-----------LTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHIL 336 (512)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~-----------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~ 336 (512)
...........+++++++.. +.....++.+.+|++.. ....+..++++| ++++++
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~sp~dg~~l~ 271 (349)
T 1jmx_B 205 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-------------LTELYFTGLRSPKDPNQIY 271 (349)
T ss_dssp CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-------------CSSCEEEEEECSSCTTEEE
T ss_pred CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc-------------CCCcceeeEecCCCCCEEE
Confidence 00000002334556554321 11222334455554421 223466789999 999998
Q ss_pred EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
++ ++.|++||+.+++.. ..+. ....+.+++|+|++ .+|++++.++.|++||+.+++.+..
T Consensus 272 ~~--~~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 272 GV--LNRLAKYDLKQRKLI-KAAN-LDHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EE--ESEEEEEETTTTEEE-EEEE-CSSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTEEEEE
T ss_pred EE--cCeEEEEECccCeEE-EEEc-CCCCccceEECCCC-CEEEEecCCCeEEEEeccccceeee
Confidence 88 889999999886642 2332 23457899999999 6777788899999999999886654
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=5.8e-20 Score=172.92 Aligned_cols=282 Identities=11% Similarity=0.067 Sum_probs=181.1
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCC----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDED----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL 124 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 124 (512)
+...+..++| +|||++|++++.+ +.|.+|+++.... ....+.....+......+++ ++++|+
T Consensus 48 ~~~~p~~l~~---spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---------~~~~~~~~~~~~~~p~~~~~--dg~~l~ 113 (361)
T 3scy_A 48 EVANPSYLIP---SADGKFVYSVNEFSKDQAAVSAFAFDKEKG---------TLHLLNTQKTMGADPCYLTT--NGKNIV 113 (361)
T ss_dssp ECSCCCSEEE---CTTSSEEEEEECCSSTTCEEEEEEEETTTT---------EEEEEEEEECSSSCEEEEEE--CSSEEE
T ss_pred cCCCCceEEE---CCCCCEEEEEEccCCCCCcEEEEEEeCCCC---------cEEEeeEeccCCCCcEEEEE--CCCEEE
Confidence 6677778888 9999999998875 7999999865311 01223344445667788888 888887
Q ss_pred EEe-CCCcEEEEeCCCCeeeeccc--------------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC----
Q 010390 125 TAS-GDQTIKIWDAEKKKCTGALM--------------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS---- 185 (512)
Q Consensus 125 s~~-~dg~i~iwd~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---- 185 (512)
+++ .++.|.+|++.....+..+. .+...+.+++|+|++..++++...++.|.+|++.....
T Consensus 114 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 114 TANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK 193 (361)
T ss_dssp EEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred EEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence 766 57899999997543332211 12334688999999833555555688999999875432
Q ss_pred C-CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390 186 P-KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA 264 (512)
Q Consensus 186 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 264 (512)
. .... .............+..++|+|+++.+++++..++.|.+||+.++.........
T Consensus 194 ~~l~~~-------------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~-- 252 (361)
T 3scy_A 194 EKFLTK-------------------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA-- 252 (361)
T ss_dssp CCCEEE-------------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE--
T ss_pred cceeec-------------------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe--
Confidence 0 0000 00000111223457889999999999887767899999999865432211000
Q ss_pred cccccccccccCeeEEEeCCCCCEEEEEecC--CeEEEEEcccCCCC--ceEeeeeceeceeEEEEEECCCCCEEEEec-
Q 010390 265 ESSSAKETRLHGISSLSQDSNGVFLTASCMD--HRIYLYNVLQLDKG--PIQHFSGCRIESFYVKSEICPNASHILSGS- 339 (512)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~- 339 (512)
....+......++|+|||++|+++..+ +.|.+|++...... .+..+.. ...+..++|+|+|++|++++
T Consensus 253 ----~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 253 ----ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp ----SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEET
T ss_pred ----cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEEC
Confidence 112223446799999999999777755 89999998532222 2222222 23456799999999888776
Q ss_pred CCCCEEEEecC--CCCCCCceeccccCCeEEEEeC
Q 010390 340 SDGNAYVWQVN--KPQADPIKLKSHDGEVTAVNWC 372 (512)
Q Consensus 340 ~dg~i~iw~~~--~~~~~~~~~~~h~~~v~~v~~~ 372 (512)
.++.|.+|+++ +++........+...+.||.|.
T Consensus 326 ~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 326 DTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 67889997665 4432111112244578888885
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=1.8e-20 Score=175.34 Aligned_cols=260 Identities=12% Similarity=0.096 Sum_probs=170.3
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeC---CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDE---DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
.++...+..++| +|||+ |++++. ++.|.+||+.++.. ..+..+..+...+..++|+|++++|
T Consensus 36 ~~~~~~p~~~a~---spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----------~~~~~~~~~~~~p~~~a~spdg~~l 100 (347)
T 3hfq_A 36 LAATQNPTYLAL---SAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----------HKLNTVVAPGTPPAYVAVDEARQLV 100 (347)
T ss_dssp EEECSCCCCEEE---CTTCE-EEEEEEETTEEEEEEEEEETTEE-----------EEEEEEEEESCCCSEEEEETTTTEE
T ss_pred eeccCCcceEEE---ccCCe-EEEEEecCCCceEEEEEecCCcE-----------EEeeeeecCCCCCEEEEECCCCCEE
Confidence 345566778888 99999 554443 68999999965431 2344445577888999999999999
Q ss_pred EEEe-CCCcEEEEeCCC-C--eeeecccC---------cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390 124 LTAS-GDQTIKIWDAEK-K--KCTGALMG---------HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC 190 (512)
Q Consensus 124 ~s~~-~dg~i~iwd~~~-~--~~~~~~~~---------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 190 (512)
++++ .++.|.+|++.. + +.+..+.. +...+.+++|+|++ +++++...++.|.+|++.........
T Consensus 101 ~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~- 178 (347)
T 3hfq_A 101 YSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQ- 178 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEE-
T ss_pred EEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEe-
Confidence 9887 689999999963 3 22332221 12358899999999 57777777889999999732111100
Q ss_pred ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC--ccceecccCCCccccc
Q 010390 191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN--LKAQITQAWPHAESSS 268 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~ 268 (512)
..........+..++|+|+++.+++++..++.|.+|++.. ++...........
T Consensus 179 ----------------------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~--- 233 (347)
T 3hfq_A 179 ----------------------SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP--- 233 (347)
T ss_dssp ----------------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC---
T ss_pred ----------------------eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC---
Confidence 0000111235678999999998888777889999999885 3221110000000
Q ss_pred cccccccCeeEEEeCCCCCEEEE-EecCCeEEEEEcccC-CCCceEeeeeceeceeEEEEEECCCCCEEEEecC-CCCEE
Q 010390 269 AKETRLHGISSLSQDSNGVFLTA-SCMDHRIYLYNVLQL-DKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-DGNAY 345 (512)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~ 345 (512)
........+..++|+|+|++|++ ...++.|.+|++... ....+..+..+ ...+..++|+|+|++|++++. ++.|.
T Consensus 234 ~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 234 ADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNAT 311 (347)
T ss_dssp TTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred CCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence 00011135788999999998755 456899999998632 11222222221 223567999999998877765 48899
Q ss_pred EEecC
Q 010390 346 VWQVN 350 (512)
Q Consensus 346 iw~~~ 350 (512)
+|+++
T Consensus 312 v~~~d 316 (347)
T 3hfq_A 312 LYARD 316 (347)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99654
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=2.9e-21 Score=183.84 Aligned_cols=292 Identities=12% Similarity=0.086 Sum_probs=190.4
Q ss_pred EeecCCccCCcce-----EEEEEecCCCcEEEEeeC-CCc--EEEEECCCCCCccccccccccccceeccccCCCcEEEE
Q 010390 43 TVEHHGEETPPLA-----VSFCKTSKNSHIFAVSDE-DGY--VSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDL 114 (512)
Q Consensus 43 ~~~~~gh~~~v~~-----v~~~~~s~~~~~latg~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 114 (512)
...+..|...... .+| ||||++||.++. +|. |.+||+.++.. .....++...+..+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~---SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-------------~~lt~~~~~~~~~~ 86 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCF---TRDGSKLLFGGAFDGPWNYYLLDLNTQVA-------------TQLTEGRGDNTFGG 86 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCB---CTTSCEEEEEECTTSSCEEEEEETTTCEE-------------EECCCSSCBCSSSC
T ss_pred eEEecCCcccccchhhcCccC---CCCCCEEEEEEcCCCCceEEEEeCCCCce-------------EEeeeCCCCCccce
Confidence 4455555544443 556 999999999887 664 88888876532 33334555555567
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEE--eeCCCCCeEEEE----------------------e
Q 010390 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLC--SHPTNSDILVSG----------------------S 170 (512)
Q Consensus 115 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~l~s~----------------------~ 170 (512)
.|+||++.|+.++.++.|++||+.+++....+..+...+.... +++++ .+++.. .
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccC
Confidence 8999999999999999999999999987766665655554444 47877 666532 2
Q ss_pred CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee-cCCEEEEEeec-----CCe
Q 010390 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAV-----NSI 244 (512)
Q Consensus 171 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~-----dg~ 244 (512)
.+..|.+||+.+++.. .+..+...+..+.|+| +++.++.+... ...
T Consensus 166 ~~~~l~~~d~~~g~~~----------------------------~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 166 PCCRLMRVDLKTGEST----------------------------VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp CCEEEEEEETTTCCEE----------------------------EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred CcceEEEEECCCCceE----------------------------EeecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 3467888888765421 1223445688999999 99988876532 237
Q ss_pred EEEEeccCccceecccCCCccccccccccc--cCeeEEEeCCCCCEEEEEec-CC----eEEEEEcccCCCCceEeeeec
Q 010390 245 VKFWDTRNLKAQITQAWPHAESSSAKETRL--HGISSLSQDSNGVFLTASCM-DH----RIYLYNVLQLDKGPIQHFSGC 317 (512)
Q Consensus 245 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~ 317 (512)
|.++|........ +..+. ..+....|+|||+.|+..+. ++ .|++||+.+.+...+..+.+.
T Consensus 218 l~~~d~~~~~~~~------------l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 285 (388)
T 3pe7_A 218 MWLINEDGTNMRK------------VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC 285 (388)
T ss_dssp EEEEETTSCCCEE------------SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE
T ss_pred EEEEeCCCCceEE------------eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc
Confidence 8888876554322 11111 24678899999997765443 22 399999976544333333321
Q ss_pred eece-eEEEEEECCCCCEEEEe---------cCCCCEEEEecCCCCCCCceeccccC-----------CeEEEEeCCCCC
Q 010390 318 RIES-FYVKSEICPNASHILSG---------SSDGNAYVWQVNKPQADPIKLKSHDG-----------EVTAVNWCPNEA 376 (512)
Q Consensus 318 ~~~~-~~~~~~~s~~~~~l~~g---------~~dg~i~iw~~~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~ 376 (512)
.... .....+|+|||+.|+.. ..+..|++||+.+++. ..+..|.. .+.+++|+||+
T Consensus 286 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~spDg- 362 (388)
T 3pe7_A 286 SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHDTSWKVFEGDRQVTHPHPSFTPDD- 362 (388)
T ss_dssp EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--EEEEECCCCCCCBTTBSSTTCCCCEECTTS-
T ss_pred eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--EEeccccCcccccccccccCCCCccCCCCC-
Confidence 1000 00113689999988754 4466899999988654 34555554 57889999999
Q ss_pred CeEEEE-eCCCcEEEEeCC
Q 010390 377 GKIVTS-SDDYTVRLWSLE 394 (512)
Q Consensus 377 ~~l~s~-~~dg~i~vwd~~ 394 (512)
+.|+.. ..+|...||.++
T Consensus 363 ~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 363 KQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp SEEEEEECTTSSCEEEEEE
T ss_pred CEEEEEecCCCceeEEEEE
Confidence 555554 467777777654
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=2.9e-21 Score=193.87 Aligned_cols=239 Identities=8% Similarity=0.053 Sum_probs=174.9
Q ss_pred CCcEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC---CCcEEEEeCCC-
Q 010390 108 QNAIFDLCWIKEDTNILTASG-DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR---DGSFAIWDLRC- 182 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~- 182 (512)
..+|++++|+|||++|++++. ||+++||++.+++.......+...+..++|+|+ +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEecc
Confidence 568999999999999998877 999999999777665544434368999999987 67777765 45567766543
Q ss_pred -CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390 183 -KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~ 261 (512)
..... .+ .....+...+|+|+++.++.++..++.+.+||+.+++....
T Consensus 99 ~~g~~~---------------------------~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l--- 147 (582)
T 3o4h_A 99 RPGEEQ---------------------------RL-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL--- 147 (582)
T ss_dssp STTCCE---------------------------EC-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE---
T ss_pred CCCccc---------------------------cc-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe---
Confidence 21110 00 01112346688999876554444566666999988764321
Q ss_pred CCccccccccccccCeeEEEeCCCCCEEEEEecC----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390 262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMD----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 337 (512)
..+.. .+++|+|||++|++++.+ +.|++||+.+.+. ..+..+ ...+..++|||||++|++
T Consensus 148 ---------~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~---~~l~~~--~~~~~~~~~SpDG~~l~~ 211 (582)
T 3o4h_A 148 ---------ARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL---RVFDSG--EGSFSSASISPGMKVTAG 211 (582)
T ss_dssp ---------EEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC---EEECCS--SCEEEEEEECTTSCEEEE
T ss_pred ---------ecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc---eEeecC--CCccccceECCCCCEEEE
Confidence 11112 789999999999988877 7899999876433 233333 234677999999999998
Q ss_pred ecCCC--CEEEEecCCCCCCCceeccccCCeEEEE--------eCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 338 GSSDG--NAYVWQVNKPQADPIKLKSHDGEVTAVN--------WCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 338 g~~dg--~i~iw~~~~~~~~~~~~~~h~~~v~~v~--------~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
+..++ .|++||+.+++.. .+.+|...+..++ |+||| .++++++.|+.+++|++ ++.+.
T Consensus 212 ~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 212 LETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp EECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEEC
T ss_pred ccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeec
Confidence 88888 8999999887663 6677777777777 99999 89999999999999999 66554
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=2e-20 Score=179.51 Aligned_cols=179 Identities=14% Similarity=0.141 Sum_probs=132.7
Q ss_pred ccCCcceEEEEEecCCCcEEE----EeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFA----VSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTNI 123 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~la----tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l 123 (512)
|.+.|.+++| +|+|++|| +|+.|+.|+|||+.+...... ........+..+.+|...|.+++|+|+ +.+|
T Consensus 91 ~~~~v~~l~~---spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 91 MKFPIHHLAL---SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK--QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp CSSCEEEEEE---CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC--SSCCCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred CCCcccEEEE---cCCCCEEEEEEeccCCCceEEEEEccccccCCc--CCcceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence 4556888888 99999999 788999999999865310000 000001124567789999999999997 8899
Q ss_pred EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
++++.||+|++||++++..+....+|...|.+++|+|++ .+|++|+.||.|++||++ +........
T Consensus 166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~------------ 231 (434)
T 2oit_A 166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPC------------ 231 (434)
T ss_dssp EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECC------------
T ss_pred EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccC------------
Confidence 999999999999999987776777789999999999997 899999999999999987 221110000
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCe------EEEEeccCcc
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSI------VKFWDTRNLK 254 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~------i~iwd~~~~~ 254 (512)
.......|...+.++.|++++.++++.+..+|. +++|++++..
T Consensus 232 --------~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 232 --------PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp --------CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred --------CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 000001234589999999998888776655543 8999998653
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=194.37 Aligned_cols=292 Identities=10% Similarity=0.012 Sum_probs=188.0
Q ss_pred eEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC---cEEEEEEecCCCEEEEEeC---
Q 010390 55 AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN---AIFDLCWIKEDTNILTASG--- 128 (512)
Q Consensus 55 ~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~--- 128 (512)
+++| +|||++++++ .||.|++||+.++.. ...+..|.. .|.+++|||||++|++++.
T Consensus 20 ~~~~---s~dg~~~~~~-~d~~i~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~ 82 (719)
T 1z68_A 20 FPNW---ISGQEYLHQS-ADNNIVLYNIETGQS-------------YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSK 82 (719)
T ss_dssp CCEE---SSSSEEEEEC-TTSCEEEEESSSCCE-------------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEE
T ss_pred ccEE---CCCCeEEEEc-CCCCEEEEEcCCCcE-------------EEEEccccccccceeeEEECCCCCeEEEEecCce
Confidence 6777 9999766665 599999999987743 222233322 4889999999999998876
Q ss_pred ------CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 129 ------DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 129 ------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
++.|++||+.+++.+.... ....+..++|+|++ +.|+.+. |+.|++||+.+++........
T Consensus 83 ~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~---------- 149 (719)
T 1z68_A 83 LWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNG---------- 149 (719)
T ss_dssp CSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCC----------
T ss_pred eEEeecceEEEEEECCCCcccccee-cCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCC----------
Confidence 7899999999998732111 12468889999999 7777775 789999999876543211000
Q ss_pred ccccccccccceeccccc---------ccEEEEEEeecCCEEEEEeecCC------------------------------
Q 010390 203 GAHLLSQSKRVSRRKAAS---------MSITSVLYLKDEVSIATASAVNS------------------------------ 243 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~g~~dg------------------------------ 243 (512)
.......++. ....++.|+|||+.|++++..++
T Consensus 150 --------~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~ 221 (719)
T 1z68_A 150 --------RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKN 221 (719)
T ss_dssp --------BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCC
T ss_pred --------CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCC
Confidence 0000001111 12358999999999998664322
Q ss_pred ---eEEEEeccCccce--ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC----CeEEEEE----cccCCCCc
Q 010390 244 ---IVKFWDTRNLKAQ--ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD----HRIYLYN----VLQLDKGP 310 (512)
Q Consensus 244 ---~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~ 310 (512)
.|++||+.+++.. .....+. .+..+...+..++|+||++++++.... ..|.+|| +.+.+...
T Consensus 222 ~~~~l~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 222 PVVRIFIIDTTYPAYVGPQEVPVPA-----MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp CEEEEEEEESSCHHHHCCEECCCCH-----HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CeeEEEEEECCCCCccceeEccCCc-----cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 7889999887642 1110000 234566778999999998877764432 2488888 65443322
Q ss_pred eEe--eeeceeceeEE-----EEEECCCCCEEEE--ecCCC--CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeE
Q 010390 311 IQH--FSGCRIESFYV-----KSEICPNASHILS--GSSDG--NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI 379 (512)
Q Consensus 311 ~~~--~~~~~~~~~~~-----~~~~s~~~~~l~~--g~~dg--~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l 379 (512)
+.. ...+. ..+. .++|+|||+.|+. ...+| .|.+|++.+++ ...+..+...+..+.++ ++ ..|
T Consensus 297 ~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~-~~i 370 (719)
T 1z68_A 297 TQEHIEESRT--GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQ-DSL 370 (719)
T ss_dssp GGEEEEECSS--SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CS-SEE
T ss_pred EEecccccCC--ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-eC-CEE
Confidence 221 01111 1222 4789999996643 44555 46666776554 34555666678887777 77 555
Q ss_pred EEEeC-----CCcEEEEeCCC
Q 010390 380 VTSSD-----DYTVRLWSLEN 395 (512)
Q Consensus 380 ~s~~~-----dg~i~vwd~~~ 395 (512)
+..+. ++.+++|.+..
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 371 FYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEecCCCCCceEEEEEEeC
Confidence 55444 48899998764
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=1.1e-19 Score=171.12 Aligned_cols=254 Identities=9% Similarity=0.067 Sum_probs=168.7
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC-CCeeeecccCc-CCCEEEEEeeCCCCC-eEEEEe-------------
Q 010390 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAE-KKKCTGALMGH-TGSIKSLCSHPTNSD-ILVSGS------------- 170 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~-~l~s~~------------- 170 (512)
....+..++|+|++++|++++.+ .|.+|++. +++........ .+.+.+++|+|++.. +++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 33467889999999999998888 89999997 77665432211 123556889999832 344553
Q ss_pred CCCcEEEEeCCC-CCCCCCccccceeeecccccccccccccccceec-ccccccEEEEEEeecCCEEEEEeecCCeEEEE
Q 010390 171 RDGSFAIWDLRC-KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR-KAASMSITSVLYLKDEVSIATASAVNSIVKFW 248 (512)
Q Consensus 171 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw 248 (512)
.+|.+.+|++.. ++..... ... ..+...+.+++|+|+++.++++...++.|.+|
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~------------------------~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNV------------------------QNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEE------------------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCceEEEEccCCCCcCcceE------------------------eeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 689999999974 2211000 000 01345789999999999988765457899999
Q ss_pred ecc-CccceecccCCCcccccccc--ccccCeeEEEeCCCCCEEEEEec-CCeEEEEEcccCCCCce---Eeeeecee--
Q 010390 249 DTR-NLKAQITQAWPHAESSSAKE--TRLHGISSLSQDSNGVFLTASCM-DHRIYLYNVLQLDKGPI---QHFSGCRI-- 319 (512)
Q Consensus 249 d~~-~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~---~~~~~~~~-- 319 (512)
|+. +++..... ... .+...+..++|+|+|++|++++. ++.|.+|++........ ..+.....
T Consensus 173 ~~~~~g~~~~~~---------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 173 RKLASGEVELVG---------SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp EECTTSCEEEEE---------EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred EECCCCCEEEee---------eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 998 55432111 111 12456889999999999988774 68999998753222211 11111110
Q ss_pred --ce-------eEEEEE-ECCCCCEEEEecCCC------CEEEEecC-CCCCCCc---eeccccCCeEEEEeCC---CCC
Q 010390 320 --ES-------FYVKSE-ICPNASHILSGSSDG------NAYVWQVN-KPQADPI---KLKSHDGEVTAVNWCP---NEA 376 (512)
Q Consensus 320 --~~-------~~~~~~-~s~~~~~l~~g~~dg------~i~iw~~~-~~~~~~~---~~~~h~~~v~~v~~~~---~~~ 376 (512)
.. .+..++ |+|||++|+++..+. .|.+|++. +++. .. ....+...+..++|+| ++
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-~~~~~~~~~~~~~~~~~a~sp~~~dg- 321 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI-EKQLFLSPTPTSGGHSNAVSPCPWSD- 321 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-EEEEEEEECSSCCTTCCCEEECTTCT-
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-EEeeeeeecCCCCcccceecCCCcCC-
Confidence 01 467799 999999987765432 79999996 3332 11 1223455677889999 78
Q ss_pred CeEEEEeC-CCcEEEEeCCCC
Q 010390 377 GKIVTSSD-DYTVRLWSLENS 396 (512)
Q Consensus 377 ~~l~s~~~-dg~i~vwd~~~~ 396 (512)
++|++++. ++.|.+|+++..
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 78888876 489999999876
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=3.8e-19 Score=183.32 Aligned_cols=295 Identities=8% Similarity=0.034 Sum_probs=194.2
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC-----cEEEEEEecCCCEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN-----AIFDLCWIKEDTNI 123 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~s~~~~~l 123 (512)
+.....+++| +|||++|+++ ||.|++||+.++.. ...+.+|.. ....++|||||++|
T Consensus 15 ~~~~~~~~~w---~~dg~~~~~~--~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~Spdg~~l 76 (740)
T 4a5s_A 15 YRLKLYSLRW---ISDHEYLYKQ--ENNILVFNAEYGNS-------------SVFLENSTFDEFGHSINDYSISPDGQFI 76 (740)
T ss_dssp SCCCCCCEEE---CSSSEEEEEE--TTEEEEEETTTCCE-------------EEEECTTTTTTCCSCCCEEEECTTSSEE
T ss_pred ccccccccEE---CCCCcEEEEc--CCcEEEEECCCCce-------------EEEEechhhhhhcccccceEECCCCCEE
Confidence 3445678888 9999999987 89999999987743 222334432 33458999999999
Q ss_pred EEEeCC---------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 124 LTASGD---------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 124 ~s~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
+.++.+ +.+.+||+.+++... +..|...+...+|+|+| +.|+.+. |+.|++||+.++.........
T Consensus 77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~~~lt~~g-- 151 (740)
T 4a5s_A 77 LLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPSYRITWTG-- 151 (740)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCSCC--
T ss_pred EEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCceEEEcCCC--
Confidence 988876 567799999998654 66677889999999999 7777774 689999999876533211100
Q ss_pred eeecccccccccccccccceeccccc---------ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAAS---------MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 265 (512)
.......++. .....+.|+|||+.|+....+++.+.+|++......
T Consensus 152 ----------------~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~--------- 206 (740)
T 4a5s_A 152 ----------------KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE--------- 206 (740)
T ss_dssp ----------------BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST---------
T ss_pred ----------------CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC---------
Confidence 0000001111 233468999999999987777777888887532211
Q ss_pred ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc---CCCCceEeeeec----eeceeEEEEEECCCCCEEEEe
Q 010390 266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ---LDKGPIQHFSGC----RIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~g 338 (512)
..+...+..+.+.+.|.. .....|++||+.+ ........+... .....+..++|+|||+.++..
T Consensus 207 -----~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 207 -----SLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp -----TCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred -----CCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 012233556666665532 1223789999976 422122233221 134567889999999976654
Q ss_pred c----CCCCEEEEecCCCC----CC-Ccee--ccccCCeE-----EEEeCCCCCCeEE-EEe-CC--CcEEEEeCCCCcc
Q 010390 339 S----SDGNAYVWQVNKPQ----AD-PIKL--KSHDGEVT-----AVNWCPNEAGKIV-TSS-DD--YTVRLWSLENSRC 398 (512)
Q Consensus 339 ~----~dg~i~iw~~~~~~----~~-~~~~--~~h~~~v~-----~v~~~~~~~~~l~-s~~-~d--g~i~vwd~~~~~~ 398 (512)
. .+..|++||+.+++ +. ...+ ..|...|. .++|+||| +.|+ ..+ .+ ..|++||+.+++.
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG-~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC-CEEEEEEEcCCCceEEEEEECCCCce
Confidence 3 33479999998876 21 1222 45665554 78999999 6655 555 33 4688899988776
Q ss_pred ccc
Q 010390 399 SSM 401 (512)
Q Consensus 399 ~~~ 401 (512)
.+.
T Consensus 357 ~~l 359 (740)
T 4a5s_A 357 TFI 359 (740)
T ss_dssp EES
T ss_pred Eec
Confidence 554
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=6.5e-19 Score=181.53 Aligned_cols=299 Identities=10% Similarity=0.044 Sum_probs=186.1
Q ss_pred CcceEEEEEecCCCcEEEEeeC---------CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDE---------DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
.+.+++| ||||++||+++. ++.|++||+++++... ...+ ...+..++|||||+.
T Consensus 61 ~~~~~~~---SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~-----------~~~l---~~~~~~~~~SPDG~~ 123 (719)
T 1z68_A 61 NASNYGL---SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR-----------GNEL---PRPIQYLCWSPVGSK 123 (719)
T ss_dssp TCSEEEE---CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-----------SSCC---CSSBCCEEECSSTTC
T ss_pred ceeeEEE---CCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc-----------ceec---CcccccceECCCCCE
Confidence 4788888 999999999876 7899999998763200 0112 246888999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecc-cCcCCCE-----------------EEEEeeCCCCCeEEEEeCC-C----------
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGAL-MGHTGSI-----------------KSLCSHPTNSDILVSGSRD-G---------- 173 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v-----------------~~l~~~~~~~~~l~s~~~d-g---------- 173 (512)
|+++. ++.|++||+.+++..... .++...| .+++|+|++ +.|++++.| +
T Consensus 124 la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~ 201 (719)
T 1z68_A 124 LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYY 201 (719)
T ss_dssp EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEEC
T ss_pred EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeecc
Confidence 99885 789999999888765433 2333323 489999998 788887755 2
Q ss_pred -----------------------cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390 174 -----------------------SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230 (512)
Q Consensus 174 -----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 230 (512)
.|++||+.+++..... .......+..+...+.+++|+|
T Consensus 202 ~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~Sp 262 (719)
T 1z68_A 202 GDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ-------------------EVPVPAMIASSDYYFSWLTWVT 262 (719)
T ss_dssp CSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE-------------------ECCCCHHHHTSCEEEEEEEESS
T ss_pred CCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee-------------------EccCCccCCCCcceEEEeEEeC
Confidence 5556666543210000 0000012235677899999999
Q ss_pred cCCEEEEEeecC---CeEEEEe----ccCccceecccCCCccccccccccccCee-----EEEeCCCCCEEEE--EecCC
Q 010390 231 DEVSIATASAVN---SIVKFWD----TRNLKAQITQAWPHAESSSAKETRLHGIS-----SLSQDSNGVFLTA--SCMDH 296 (512)
Q Consensus 231 ~~~~l~~~g~~d---g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~--~~~dg 296 (512)
|++.+++....+ ..|.+|| ..+++...... . ....+...+. .+.|+|||+.++. +..+|
T Consensus 263 D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 263 DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE--H-----IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE--E-----EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe--c-----ccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence 976555432211 3588899 76665432210 0 0023444455 7899999996554 44555
Q ss_pred --eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-----CCCEEEEecCC--CCCCCcee----cccc
Q 010390 297 --RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-----DGNAYVWQVNK--PQADPIKL----KSHD 363 (512)
Q Consensus 297 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----dg~i~iw~~~~--~~~~~~~~----~~h~ 363 (512)
.|.+||+.... ...+.... ..+..+.++ +++.|+..+. ++.+++|.+.. +......+ .+|.
T Consensus 336 ~~~l~~~~~~~~~---~~~lt~~~--~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~ 409 (719)
T 1z68_A 336 YKHIHYIKDTVEN---AIQITSGK--WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKER 409 (719)
T ss_dssp CEEEEEESSCSTT---CEECSCSS--SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTT
T ss_pred ceEEEEEECCCCc---eEecccCc--eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCC
Confidence 56667764432 22333221 123445555 7777665554 47899998764 21111222 2366
Q ss_pred CCeEEEEeCCCCCCeEEEEeCC--CcEEEEeCCCCccccc
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDD--YTVRLWSLENSRCSSM 401 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~ 401 (512)
..+..+.|+|++..++++++.+ ..+.+||+.++++...
T Consensus 410 ~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~ 449 (719)
T 1z68_A 410 CQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKI 449 (719)
T ss_dssp BCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEE
Confidence 7788999999994444455544 5788999988875443
No 162
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=1.8e-19 Score=167.70 Aligned_cols=238 Identities=9% Similarity=0.050 Sum_probs=166.6
Q ss_pred CcceEEEEEecCCCcEE-EEeeCCCcEEEEECCCCCCccccccccccccceeccc-c----CCCcEEEEEEecCCCEEEE
Q 010390 52 PPLAVSFCKTSKNSHIF-AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-A----HQNAIFDLCWIKEDTNILT 125 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~----h~~~V~~l~~s~~~~~l~s 125 (512)
.+.+++| +|+|+++ +++..++.|.+||+.+++. +..+. + |...+.+++|+|++++|++
T Consensus 35 ~~~~~~~---s~dg~~l~v~~~~~~~v~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 35 TPMVPMV---APGGRIAYATVNKSESLVKIDLVTGET-------------LGRIDLSTPEERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp CCCCEEE---CTTSSEEEEEETTTTEEEEEETTTCCE-------------EEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred CccceEE---cCCCCEEEEEeCCCCeEEEEECCCCCe-------------EeeEEcCCcccccccccceEECCCCCEEEE
Confidence 4778888 9999765 5556688999999987643 22221 1 1235678999999999998
Q ss_pred Ee------------CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 126 AS------------GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 126 ~~------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
++ .++.|.+||+.+++.+..+.. ...+.+++|+|++ ++|+++ ++.|.+||+.+++.......
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~~~~-- 172 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVEDKPI-- 172 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEEECS--
T ss_pred EecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeeeeec--
Confidence 86 579999999999988777764 4567889999998 666666 68999999986643211100
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC-----------------------eEEEEec
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS-----------------------IVKFWDT 250 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg-----------------------~i~iwd~ 250 (512)
..... .+.|+|++..+++++..++ .|.+||+
T Consensus 173 -----------------------~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 173 -----------------------QSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp -----------------------TTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred -----------------------cccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 00001 1145677666554443333 4789999
Q ss_pred cCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390 251 RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP 330 (512)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 330 (512)
.+++.. .. ....+...+.+++|+|++++++++ ++.|.+||+.+.+ .+..+.. ...+..++|+|
T Consensus 227 ~~~~~~-~~---------~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~--~~~~~~~---~~~~~~~~~s~ 289 (337)
T 1pby_B 227 ETGEMA-MR---------EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA--SIKRVPL---PHSYYSVNVST 289 (337)
T ss_dssp TTCCEE-EE---------EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE--EEEEEEC---SSCCCEEEECT
T ss_pred CCCCce-Ee---------ecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc--CcceecC---CCceeeEEECC
Confidence 887654 11 233344567889999999999988 7999999986532 2222222 12355789999
Q ss_pred CCCEEEEecCCCCEEEEecCCCCC
Q 010390 331 NASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 331 ~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
++++|++++.++.|++||+.+++.
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCEEEEEcCCCcEEEEECcCCcE
Confidence 999998888899999999988765
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=2.7e-19 Score=170.59 Aligned_cols=282 Identities=9% Similarity=0.036 Sum_probs=178.1
Q ss_pred CCcceEEEEEecCCCcEEEEeeCC---CcEEEEECCCCCCccccccccccccceeccccCCCcE-EEEEEecCCCEEEEE
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDED---GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAI-FDLCWIKEDTNILTA 126 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~s~~~~~l~s~ 126 (512)
..+.+++| ||||++||..... ..|.+||+.+++. ..+..+...+ ..+.|+|||++|+.+
T Consensus 36 ~~~~~~~~---SpdG~~l~~~~~~~g~~~l~~~d~~~~~~--------------~~l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 36 NYFYQKCF---TQDGKKLLFAGDFDGNRNYYLLNLETQQA--------------VQLTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp CCTTSCCB---CTTSCEEEEEECTTSSCEEEEEETTTTEE--------------EECCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eeeecCcC---CCCCCEEEEEEecCCCceEEEEECCCCcE--------------EEeecCCCCccccceECCCCCEEEEE
Confidence 33777888 9999998877543 3688889876532 2222233332 337899999999999
Q ss_pred eCCCcEEEEeCCCCeeeecccCcCCCEEE-------------------EEeeCCCCCeEEEE-----eCCCcEEEEeCCC
Q 010390 127 SGDQTIKIWDAEKKKCTGALMGHTGSIKS-------------------LCSHPTNSDILVSG-----SRDGSFAIWDLRC 182 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-------------------l~~~~~~~~~l~s~-----~~dg~i~vwd~~~ 182 (512)
+.++.|++||+.+++.......+...... +.|+|++ ..++.+ ..+..|.+||+.+
T Consensus 99 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~ 177 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIET 177 (396)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTT
T ss_pred EcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCC
Confidence 99999999999988765555444432222 2456665 443332 3456788888875
Q ss_pred CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee-cCCEEEEEeecC-----CeEEEEeccCccce
Q 010390 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVN-----SIVKFWDTRNLKAQ 256 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~d-----g~i~iwd~~~~~~~ 256 (512)
++.. ....+...+..+.|+| ++..++.+.... ..|.+||+......
T Consensus 178 g~~~----------------------------~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (396)
T 3c5m_A 178 GELE----------------------------VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR 229 (396)
T ss_dssp CCEE----------------------------EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE
T ss_pred CcEE----------------------------eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee
Confidence 4321 1113345688999999 788777654221 36888888765432
Q ss_pred ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-
Q 010390 257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP- 330 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 330 (512)
... .......+..+.|+|+|++|+.++.+ +.|++||+.+.....+....+ .. +.|+|
T Consensus 230 ~l~----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~------~~-~~~s~~ 292 (396)
T 3c5m_A 230 KIK----------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP------CS-HLMSNF 292 (396)
T ss_dssp ESS----------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS------EE-EEEECS
T ss_pred Eee----------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC------CC-CCccCC
Confidence 211 10012347789999999987776544 459999986543222221111 12 78999
Q ss_pred CCCEEEEec----------------CCCCEEEEecCCCCCCCceeccccC-----------CeEEEEeCCCCCCeEEEEe
Q 010390 331 NASHILSGS----------------SDGNAYVWQVNKPQADPIKLKSHDG-----------EVTAVNWCPNEAGKIVTSS 383 (512)
Q Consensus 331 ~~~~l~~g~----------------~dg~i~iw~~~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~~~l~s~~ 383 (512)
+|+++++++ .+..|++||+.+++. ..+..+.. .+..++|+|++ ..|+.++
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~s 369 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPND-DGVLFTS 369 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTS-SEEEEEE
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCC-CeEEEEe
Confidence 999888754 346799999987654 34444443 25678999999 6666655
Q ss_pred -CCCcEEEE--eCCCCcc
Q 010390 384 -DDYTVRLW--SLENSRC 398 (512)
Q Consensus 384 -~dg~i~vw--d~~~~~~ 398 (512)
.++...+| ++.+++.
T Consensus 370 ~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 370 DFEGVPAIYIADVPESYK 387 (396)
T ss_dssp CTTSSCEEEEEECCTTCC
T ss_pred cCCCCceEEEEEEccccc
Confidence 45555555 5555543
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=1.4e-18 Score=162.66 Aligned_cols=284 Identities=10% Similarity=0.016 Sum_probs=180.5
Q ss_pred CCCcEEEEee------CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC--------
Q 010390 63 KNSHIFAVSD------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-------- 128 (512)
Q Consensus 63 ~~~~~latg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-------- 128 (512)
++++++++.. .|+.|.+||..+++. +..+..+..+ .++|+||+++|+++..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~-------------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g 77 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKF-------------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRG 77 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCE-------------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSS
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeE-------------EEEecCCCCC--ceEECCCCCEEEEEEecccccccC
Confidence 4666666653 367999999877643 3444455444 8999999999998763
Q ss_pred --CCcEEEEeCCCCeeeecccCc------CCCEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeeec
Q 010390 129 --DQTIKIWDAEKKKCTGALMGH------TGSIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 129 --dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
++.|.+||..+++.+..+... ......++++|++ ++|+++.. ++.|.+||+.+.+.....
T Consensus 78 ~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~--------- 147 (361)
T 2oiz_A 78 KRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDV--------- 147 (361)
T ss_dssp CEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEE---------
T ss_pred CCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEE---------
Confidence 678999999998887776532 2356678999998 67776653 689999999865432110
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccccccccCe
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
.. . .....+.+.|++...+++.+.||.+.+|+... ++......... .......+
T Consensus 148 -----------------i~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~-----~~~~~~~~- 202 (361)
T 2oiz_A 148 -----------------TA-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ-----MFSVKDDP- 202 (361)
T ss_dssp -----------------GG-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC-----CSCTTTSC-
T ss_pred -----------------ec-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc-----eEcCCCCc-
Confidence 00 0 11222556676644444455788898888765 33221100000 01111111
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-----e---ceeEEEEEECCCCCEEEEecC---------
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-----I---ESFYVKSEICPNASHILSGSS--------- 340 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~---~~~~~~~~~s~~~~~l~~g~~--------- 340 (512)
..+.+++++..++..+.++.|.++|+..........+.-.. . ......++++|+++.++++..
T Consensus 203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~ 282 (361)
T 2oiz_A 203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK 282 (361)
T ss_dssp BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence 12334566777777778999999998643222111111000 0 000112688999888766532
Q ss_pred --CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC--ccccc
Q 010390 341 --DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS--RCSSM 401 (512)
Q Consensus 341 --dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~ 401 (512)
.+.|.+||+.+.+. +..+..+. +.+++|+|++ ++|++++. +.|.+||..++ +.+..
T Consensus 283 ~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 283 FPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp CCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTT-TEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred CCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCC-CEEEEeCC-CeEEEEECCCCcceeeEE
Confidence 34799999998775 45566555 9999999999 78888876 99999999999 66554
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=5.2e-18 Score=161.28 Aligned_cols=255 Identities=9% Similarity=0.046 Sum_probs=167.9
Q ss_pred eeccccCCCcEEE-----EEEecCCCEEEEEeC-CC--cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC
Q 010390 101 ISDWVAHQNAIFD-----LCWIKEDTNILTASG-DQ--TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD 172 (512)
Q Consensus 101 ~~~~~~h~~~V~~-----l~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 172 (512)
+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++......++...+..+.|+|++ ..|+.++.+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~ 101 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-DALFYVKDG 101 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS-SEEEEEETT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC-CEEEEEeCC
Confidence 5566667766666 889999999998887 66 48889999998887777776666677899998 889999988
Q ss_pred CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEE--EEeecCCEEEEEe-----------
Q 010390 173 GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSV--LYLKDEVSIATAS----------- 239 (512)
Q Consensus 173 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~g----------- 239 (512)
+.|++||+.+++.... ...+...+... .+++++..++...
T Consensus 102 ~~l~~~d~~~g~~~~~---------------------------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 102 RNLMRVDLATLEENVV---------------------------YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp TEEEEEETTTCCEEEE---------------------------EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred CeEEEEECCCCcceee---------------------------eechhhcccccceeECCCCCeeccccccCcccccccc
Confidence 9999999987643211 11112223223 3478888776421
Q ss_pred ----------ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecC------CeEEEEE
Q 010390 240 ----------AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMD------HRIYLYN 302 (512)
Q Consensus 240 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d 302 (512)
..+..|.+||+.+++... ...+...+..+.|+| +|+.|+....+ ..|.++|
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~------------l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGESTV------------ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLIN 222 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCCEEE------------EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEE
T ss_pred cchhhhhhccCCcceEEEEECCCCceEE------------eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEe
Confidence 134689999998875432 333445688999999 99988877653 3788888
Q ss_pred cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-CC----CEEEEecCCCCCCC-ceeccccCC---eEEEEeCC
Q 010390 303 VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-DG----NAYVWQVNKPQADP-IKLKSHDGE---VTAVNWCP 373 (512)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg----~i~iw~~~~~~~~~-~~~~~h~~~---v~~v~~~~ 373 (512)
..... ...+........+...+|+|||+.|+..+. ++ .|++||+.+++... ..+.++... ...++|+|
T Consensus 223 ~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp 299 (388)
T 3pe7_A 223 EDGTN---MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG 299 (388)
T ss_dssp TTSCC---CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE
T ss_pred CCCCc---eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc
Confidence 65432 222222221124566899999998765433 22 39999998876421 122221100 11236999
Q ss_pred CCCCeEEEE---------eCCCcEEEEeCCCCccc
Q 010390 374 NEAGKIVTS---------SDDYTVRLWSLENSRCS 399 (512)
Q Consensus 374 ~~~~~l~s~---------~~dg~i~vwd~~~~~~~ 399 (512)
|| +.|+.. ..+..|++||+.+++..
T Consensus 300 dg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 300 DG-SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp EE-CCC------------CCCCEEEEEETTTTEEE
T ss_pred CC-CcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence 99 555532 55679999999987653
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=1.2e-18 Score=163.92 Aligned_cols=254 Identities=9% Similarity=-0.026 Sum_probs=164.2
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECC-CCCCccccccccccccceeccccCCCcEEEEEEecCCCE--EEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR-RKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN--ILT 125 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~--l~s 125 (512)
....+..+++ +|||++|++++.+ .|.+|++. ++.. ..+.....+ +.+..++|+|+|++ +++
T Consensus 38 ~~~~~~~~a~---spdg~~l~~~~~~-~v~~~~~~~~g~~-----------~~~~~~~~~-g~~~~~~~spdg~~l~~~~ 101 (365)
T 1jof_A 38 QDEPISWMTF---DHERKNIYGAAMK-KWSSFAVKSPTEI-----------VHEASHPIG-GHPRANDADTNTRAIFLLA 101 (365)
T ss_dssp TTCCCSEEEE---CTTSSEEEEEEBT-EEEEEEEEETTEE-----------EEEEEEECC-SSGGGGCTTSCCEEEEEEE
T ss_pred CCCCCcEEEE---CCCCCEEEEEccc-eEEEEEECCCCCE-----------EEeeEeecC-CCCccEEECCCCCEEEEEE
Confidence 3345677777 9999999998887 99999986 4421 001111111 22445889999994 445
Q ss_pred Ee-------------CCCcEEEEeCC-CCeeeeccc----CcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCC-CCCC
Q 010390 126 AS-------------GDQTIKIWDAE-KKKCTGALM----GHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLR-CKSS 185 (512)
Q Consensus 126 ~~-------------~dg~i~iwd~~-~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~ 185 (512)
+. .+|.+.+|++. +++....+. .+...+.+++|+|++ ++|+++. .++.|++||+. +++.
T Consensus 102 ~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 102 AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEV 180 (365)
T ss_dssp CSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCE
T ss_pred ecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCE
Confidence 53 68999999997 465543333 245679999999998 6666655 46799999997 4331
Q ss_pred CCCccccceeeecccccccccccccccceecc--cccccEEEEEEeecCCEEEEEeecCCeEEEEecc--Ccccee---c
Q 010390 186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK--AASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQI---T 258 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~~---~ 258 (512)
.. ..... .+...+..++|+|+++.+++++..++.|.+|+++ +++... .
T Consensus 181 ~~-------------------------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 235 (365)
T 1jof_A 181 EL-------------------------VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS 235 (365)
T ss_dssp EE-------------------------EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EE-------------------------eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence 10 00111 1245688999999999998877667899999875 333211 0
Q ss_pred c-cCCCcccccccccccc------CeeEEE-eCCCCCEEEEEecCC------eEEEEEcccCCCCceEe---eeeceece
Q 010390 259 Q-AWPHAESSSAKETRLH------GISSLS-QDSNGVFLTASCMDH------RIYLYNVLQLDKGPIQH---FSGCRIES 321 (512)
Q Consensus 259 ~-~~~~~~~~~~~~~~~~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~---~~~~~~~~ 321 (512)
. ..+. ...++.. .+..++ |+|||++|+++..+. .|.+|++.. ....... .... ..
T Consensus 236 ~~~~~~-----~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~~--~~ 307 (365)
T 1jof_A 236 FPLIPP-----GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTP--TS 307 (365)
T ss_dssp EESSCT-----TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECS--SC
T ss_pred EEcCCC-----CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEEEeeeeeecC--CC
Confidence 0 0000 0111121 478899 999999988776432 899999863 1222111 1111 11
Q ss_pred eEEEEEECC---CCCEEEEecCC-CCEEEEecCCC
Q 010390 322 FYVKSEICP---NASHILSGSSD-GNAYVWQVNKP 352 (512)
Q Consensus 322 ~~~~~~~s~---~~~~l~~g~~d-g~i~iw~~~~~ 352 (512)
....++|+| +|++|++++.+ +.|.+|+++..
T Consensus 308 ~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 233478899 89999888764 89999998764
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=1.6e-17 Score=169.56 Aligned_cols=293 Identities=10% Similarity=-0.036 Sum_probs=192.0
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEe--eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEE---------E
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVS--DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIF---------D 113 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~ 113 (512)
.+.+|...+..+++ ++++-+++.. +.++...||....+. ....+..|...+. .
T Consensus 18 ~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 18 LVASRSGRPACVGA---VGDEVWWVAPRPAEAGRATLVRRRADG-------------AEESALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp HHHHTCSCCEEEEE---ETTEEEEEEEETTTTTEEEEEEECTTS-------------CEEESSCTTCCBCCCGGGTCCCC
T ss_pred HHhhcCCccceeEE---cCCeEEEEecCcccCCcEEEEEECCCC-------------CcceeCCCCccccccccccCCcc
Confidence 45678889999998 8877777777 668899999863321 1344555555555 5
Q ss_pred EEEe--cCCCE-EEEEeC-CCcEEEEeCC--C-CeeeecccC-----cCCCEEEEEeeCCCCCeEEEEeCC---------
Q 010390 114 LCWI--KEDTN-ILTASG-DQTIKIWDAE--K-KKCTGALMG-----HTGSIKSLCSHPTNSDILVSGSRD--------- 172 (512)
Q Consensus 114 l~~s--~~~~~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~d--------- 172 (512)
..|+ |||+. |+.++. +..|.+|++. . ++ ...+.. |...+.+++|+|++ +.|+.++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCE
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCc
Confidence 6666 99998 775543 5667777775 3 43 344444 56778999999998 788877766
Q ss_pred -CcEEEEeCCC------CCCCCCccccceeeecccccccccccccccceecc-cccccEEEEEEeecCCEEEEEeecC--
Q 010390 173 -GSFAIWDLRC------KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK-AASMSITSVLYLKDEVSIATASAVN-- 242 (512)
Q Consensus 173 -g~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~g~~d-- 242 (512)
..|++||+.+ +.. ..+. .+...+..++|+|||+.+++++...
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~----------------------------~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~ 211 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAV----------------------------RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR 211 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGS----------------------------EESSCSCSSEECCCEECTTSSEEEEEEECTTC
T ss_pred eeEEEEEECCCCccccCCce----------------------------eEEEecCCCcccCceECCCCCEEEEEECCCCC
Confidence 5899999876 221 1122 2345677889999999998766432
Q ss_pred -----CeEEEEecc-Ccc--ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC--eEEEEEcccCCCCceE
Q 010390 243 -----SIVKFWDTR-NLK--AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH--RIYLYNVLQLDKGPIQ 312 (512)
Q Consensus 243 -----g~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~ 312 (512)
..|++||+. ++. .... ....+...+..+.|+|||++++++..++ .|.+||+...+ ..
T Consensus 212 ~~~~~~~i~~~d~~~~g~~~~~~~----------l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~---~~ 278 (662)
T 3azo_A 212 MPWEGTELKTARVTEDGRFADTRT----------LLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA---AT 278 (662)
T ss_dssp CTTTCEEEEEEEECTTSCEEEEEE----------EEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC---EE
T ss_pred CCCCCcEEEEEEECCCCcccccEE----------eCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc---ee
Confidence 479999998 451 1111 1223356789999999999888888888 56666653322 11
Q ss_pred eeeeceece-------eEEEEEECCCCCEEEEecCCCCEEEEecC--CCCCCCceeccccCCeEEE-EeCCCCCCeEEEE
Q 010390 313 HFSGCRIES-------FYVKSEICPNASHILSGSSDGNAYVWQVN--KPQADPIKLKSHDGEVTAV-NWCPNEAGKIVTS 382 (512)
Q Consensus 313 ~~~~~~~~~-------~~~~~~~s~~~~~l~~g~~dg~i~iw~~~--~~~~~~~~~~~h~~~v~~v-~~~~~~~~~l~s~ 382 (512)
.+....... .+..++|+++++++++++. +.++||.++ +++ ...+..|...+..+ +++.+. .+++++
T Consensus 279 ~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~s~~~~~-~~~~~~ 354 (662)
T 3azo_A 279 QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE--LVDAAGPWTEWAATLTVSGTR-AVGVAA 354 (662)
T ss_dssp ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--EEECCSSCCEEEEEEEEETTE-EEEEEE
T ss_pred ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--EEEecCCCCeEEEEEecCCCE-EEEEEc
Confidence 211111000 0335789999999999998 999999544 333 35666777778877 554433 344445
Q ss_pred eCCC--cEEEEeCCCCcccc
Q 010390 383 SDDY--TVRLWSLENSRCSS 400 (512)
Q Consensus 383 ~~dg--~i~vwd~~~~~~~~ 400 (512)
+.+. .|.+||+.+++...
T Consensus 355 ~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 355 SPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp ETTEEEEEEEEETTTCCEEE
T ss_pred CCCCCCEEEEEECCCCceEE
Confidence 5554 56666777776544
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=4.7e-18 Score=158.96 Aligned_cols=241 Identities=9% Similarity=-0.012 Sum_probs=154.8
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 113 DLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 113 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++..+++++..++.|.+||+.+++.......
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 34677788899999999999999999999887776443 25778999999844556666789999999986543211100
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec-----------CCeEEEEeccCccceeccc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-----------NSIVKFWDTRNLKAQITQA 260 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-----------dg~i~iwd~~~~~~~~~~~ 260 (512)
. . ........+..++|+|+++.+++++.. ++.|.+||+.+++.....
T Consensus 84 ~---------~------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~- 141 (349)
T 1jmx_B 84 S---------S------------VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV- 141 (349)
T ss_dssp C---------C------------STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-
T ss_pred c---------c------------ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-
Confidence 0 0 000002347789999999999987643 489999999875433211
Q ss_pred CCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece----------------------
Q 010390 261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR---------------------- 318 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------------------- 318 (512)
....+...+.+++|+|+|+ +++++ +.|.+||+.+.+. ...+....
T Consensus 142 --------~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (349)
T 1jmx_B 142 --------RTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY--TVALPLRNWNRKGYSAPDVLYFWPHQSPRH 208 (349)
T ss_dssp --------EEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE--EEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred --------eeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce--eccccccccCCccccCccceeeecCCCcce
Confidence 1112223588999999999 66653 3499999865432 22222110
Q ss_pred eceeEEEEEECCCCCE-----------EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCC-CCCCeEEEEeCCC
Q 010390 319 IESFYVKSEICPNASH-----------ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP-NEAGKIVTSSDDY 386 (512)
Q Consensus 319 ~~~~~~~~~~s~~~~~-----------l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~l~s~~~dg 386 (512)
.......+++++++.. +.....++.+++|++ ..+...+.+++|+| ++ ++++++ ++
T Consensus 209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sp~dg-~~l~~~--~~ 275 (349)
T 1jmx_B 209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRSPKDP-NQIYGV--LN 275 (349)
T ss_dssp EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECSSCT-TEEEEE--ES
T ss_pred eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc----------ccCCCcceeeEecCCCC-CEEEEE--cC
Confidence 0002334566655421 122333444544444 23556788999999 98 777777 88
Q ss_pred cEEEEeCCCCccccc
Q 010390 387 TVRLWSLENSRCSSM 401 (512)
Q Consensus 387 ~i~vwd~~~~~~~~~ 401 (512)
.|.+||+.+++.+..
T Consensus 276 ~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 276 RLAKYDLKQRKLIKA 290 (349)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred eEEEEECccCeEEEE
Confidence 999999998876543
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=1.3e-16 Score=164.34 Aligned_cols=325 Identities=9% Similarity=0.032 Sum_probs=183.8
Q ss_pred eecCCccCCcceEEE--EEecCCCcEEEEeeCC---------CcEEEEECCCCCCccccccccccccceeccccCCCcEE
Q 010390 44 VEHHGEETPPLAVSF--CKTSKNSHIFAVSDED---------GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIF 112 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~--~~~s~~~~~latg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 112 (512)
..+.+|......+++ ..|||||++||.++.+ +.+.+||+.+++ ...+..|.+.+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~--------------~~~l~~~~~~~~ 115 (740)
T 4a5s_A 50 VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ--------------LITEERIPNNTQ 115 (740)
T ss_dssp EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE--------------ECCSSCCCTTEE
T ss_pred EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc--------------EEEcccCCCcce
Confidence 345566544444333 3449999999998875 667799998763 334567788999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec-ccCcCCCE-----------------EEEEeeCCCCCeEEEEeCC-C
Q 010390 113 DLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA-LMGHTGSI-----------------KSLCSHPTNSDILVSGSRD-G 173 (512)
Q Consensus 113 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~h~~~v-----------------~~l~~~~~~~~~l~s~~~d-g 173 (512)
..+|||||+.||.+. |+.|++|++.+++..+. ..++...+ .++.|+|++ +.|+.++.| +
T Consensus 116 ~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~ 193 (740)
T 4a5s_A 116 WVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDT 193 (740)
T ss_dssp EEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECT
T ss_pred eeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEccc
Confidence 999999999999884 68899999988875542 22333323 348899999 777776654 4
Q ss_pred cEEEEeCCCCCCCCCccccceeeeccccccc--------c--cccc---cc--cceecc------cccccEEEEEEeecC
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGA--------H--LLSQ---SK--RVSRRK------AASMSITSVLYLKDE 232 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~---~~--~~~~~~------~~~~~v~~~~~~~~~ 232 (512)
.+.+|++.......... ...........+ . .... .. ....+. .+...+..++|+||+
T Consensus 194 ~v~~~~~~~~~~~~~~~--~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 194 EVPLIEYSFYSDESLQY--PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp TCCEEEEEECCSTTCSS--CEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred CCceEEEEeecCCCCCC--CcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC
Confidence 47777653222110000 000000000000 0 0000 00 111111 367789999999999
Q ss_pred CEEEEEeec---CCeEEEEeccCcc----ceecccCCCccccccccccccCee-----EEEeCCCCCEEE-EEe-cC--C
Q 010390 233 VSIATASAV---NSIVKFWDTRNLK----AQITQAWPHAESSSAKETRLHGIS-----SLSQDSNGVFLT-ASC-MD--H 296 (512)
Q Consensus 233 ~~l~~~g~~---dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~-~~~-~d--g 296 (512)
+.++..... +..|.+||+.+++ +...... ....+...+. ...|+|||+.++ ..+ .+ .
T Consensus 272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l-------~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~ 344 (740)
T 4a5s_A 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH-------IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR 344 (740)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE-------EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe-------eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCce
Confidence 976654322 2479999999876 2211100 0122333333 688999999876 554 34 4
Q ss_pred eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecC----CCCEEEEecC--CCCCCCceec----cccCC
Q 010390 297 RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSS----DGNAYVWQVN--KPQADPIKLK----SHDGE 365 (512)
Q Consensus 297 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~----dg~i~iw~~~--~~~~~~~~~~----~h~~~ 365 (512)
.|++||+..... ..+.... -.+..+. .++++.| +++.. .+..+||.+. ..... ..+. +....
T Consensus 345 ~l~~~~~~~~~~---~~lT~g~--~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~-~~lt~~~~~~~~~ 417 (740)
T 4a5s_A 345 HICYFQIDKKDC---TFITKGT--WEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV-TCLSCELNPERCQ 417 (740)
T ss_dssp EEEEEETTCSSC---EESCCSS--SCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEE-EESSTTTSTTTBC
T ss_pred EEEEEECCCCce---EecccCC--EEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcc-eeeccccCCCCCc
Confidence 688888754322 2222221 1122222 1335555 44443 2445555543 32211 1121 23457
Q ss_pred eEEEEeCCCCCCeEE-EEeCC--CcEEEEeCCCCccccc
Q 010390 366 VTAVNWCPNEAGKIV-TSSDD--YTVRLWSLENSRCSSM 401 (512)
Q Consensus 366 v~~v~~~~~~~~~l~-s~~~d--g~i~vwd~~~~~~~~~ 401 (512)
+..+.|+|++ .+++ +.+.. ..+.+++..+++....
T Consensus 418 ~~~~~~S~dg-~~~~~~~s~~~~p~~~l~~~~~~~~~~~ 455 (740)
T 4a5s_A 418 YYSVSFSKEA-KYYQLRCSGPGLPLYTLHSSVNDKGLRV 455 (740)
T ss_dssp BEEEEECTTS-SEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred eEEEEECCCC-CEEEEEeCCCCCCEEEEEECCCCcEEEE
Confidence 8899999999 5544 44332 4688888887765443
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=3.8e-16 Score=141.62 Aligned_cols=245 Identities=11% Similarity=0.120 Sum_probs=168.0
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc------CcCCCEEEEEee-CCCCCeEEEEeC-CCcEEE
Q 010390 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM------GHTGSIKSLCSH-PTNSDILVSGSR-DGSFAI 177 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~~l~s~~~-dg~i~v 177 (512)
++-..+.++++++++.++++...++.|.+||.. ++.+..+. ++...+.++++. +++ .++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEE
Confidence 556789999999999988888889999999987 55555443 244578999995 544 66666543 789999
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
||.. ++..... ...+...+.++++++++..+++ ...++.|.+||... +...
T Consensus 105 ~d~~-g~~~~~~--------------------------~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~~~~~~g-~~~~ 155 (286)
T 1q7f_A 105 YNQY-GQFVRKF--------------------------GATILQHPRGVTVDNKGRIIVV-ECKVMRVIIFDQNG-NVLH 155 (286)
T ss_dssp ECTT-SCEEEEE--------------------------CTTTCSCEEEEEECTTSCEEEE-ETTTTEEEEECTTS-CEEE
T ss_pred ECCC-CcEEEEe--------------------------cCccCCCceEEEEeCCCCEEEE-ECCCCEEEEEcCCC-CEEE
Confidence 9943 3211100 0012346789999999975554 54678999999653 2222
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 337 (512)
.. ....+...+..++++++|+++++...++.|++||... ..+..+...........++++++|+++++
T Consensus 156 ~~---------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~g~~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 156 KF---------GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGEILIA 223 (286)
T ss_dssp EE---------ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCCEEEE
T ss_pred Ee---------CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC---CEEEEEccCCccCCCcEEEECCCCCEEEE
Confidence 11 0112334588999999999887777899999999632 23333332211234677999999998888
Q ss_pred ecCCC-CEEEEecCCCCCCCceeccc--cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 338 GSSDG-NAYVWQVNKPQADPIKLKSH--DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 338 g~~dg-~i~iw~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
...++ .|.+|+... +. ...+..+ ...+.+++++|++ +++++ +.|+.|++|++....
T Consensus 224 ~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 224 DNHNNFNLTIFTQDG-QL-ISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp ECSSSCEEEEECTTS-CE-EEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCCC
T ss_pred eCCCCEEEEEECCCC-CE-EEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEccccc
Confidence 87775 999999643 22 2334333 2347899999998 67776 679999999986543
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=1.4e-15 Score=137.81 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=168.8
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe-cCCCEEEEE
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI-KEDTNILTA 126 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~s~ 126 (512)
||-..+.+|++ +++|+++++...++.|.+||.+.... ... .......+|...+.++++. +++..+++.
T Consensus 27 g~~~~p~~v~~---~~~g~l~v~~~~~~~i~~~d~~g~~~-~~~-------~~~~~~~~~~~~p~~i~~~~~~g~l~v~~ 95 (286)
T 1q7f_A 27 GQFTEPSGVAV---NAQNDIIVADTNNHRIQIFDKEGRFK-FQF-------GECGKRDSQLLYPNRVAVVRNSGDIIVTE 95 (286)
T ss_dssp TCBSCEEEEEE---CTTCCEEEEEGGGTEEEEECTTSCEE-EEE-------CCBSSSTTCBSSEEEEEEETTTTEEEEEE
T ss_pred CccCCCceEEE---CCCCCEEEEECCCCEEEEECCCCcEE-EEe-------cccCCCcccccCceEEEEEcCCCeEEEEc
Confidence 45566778887 99999888888899999999763311 000 0000012455678999995 566666655
Q ss_pred eC-CCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 127 SG-DQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 127 ~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
.. ++.|.+|| .+++.+..+. .+...+.++++.+++ +++++...++.|.+||.... .....
T Consensus 96 ~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~~~--------------- 157 (286)
T 1q7f_A 96 RSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VLHKF--------------- 157 (286)
T ss_dssp CGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC-EEEEE---------------
T ss_pred CCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCCC-EEEEe---------------
Confidence 33 88999999 5666666553 344578999999988 78888778899999996421 11000
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (512)
....+...+..+++++++..++ +...++.|.+||.... ...... ...+...+..+++++
T Consensus 158 ----------~~~~~~~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~~g~-~~~~~~---------~~g~~~~p~~i~~d~ 216 (286)
T 1q7f_A 158 ----------GCSKHLEFPNGVVVNDKQEIFI-SDNRAHCVKVFNYEGQ-YLRQIG---------GEGITNYPIGVGINS 216 (286)
T ss_dssp ----------ECTTTCSSEEEEEECSSSEEEE-EEGGGTEEEEEETTCC-EEEEES---------CTTTSCSEEEEEECT
T ss_pred ----------CCCCccCCcEEEEECCCCCEEE-EECCCCEEEEEcCCCC-EEEEEc---------cCCccCCCcEEEECC
Confidence 0012234688999999988544 4556899999997543 222111 111224578999999
Q ss_pred CCCEEEEEecCC-eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390 285 NGVFLTASCMDH-RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 285 ~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 352 (512)
+|+++++...++ .|.+||.. ...+..+........+..++++|+|+++++ +.++.|++|++...
T Consensus 217 ~G~l~v~~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 217 NGEILIADNHNNFNLTIFTQD---GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TCCEEEEECSSSCEEEEECTT---SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCEEEEeCCCCEEEEEECCC---CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999888887776 99999953 233444444332334667999999987777 56899999998653
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=7.2e-16 Score=142.62 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=176.7
Q ss_pred CCcEEEEEEecCCCEEEEEeCC------------------------CcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCC
Q 010390 108 QNAIFDLCWIKEDTNILTASGD------------------------QTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTN 162 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~ 162 (512)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+..+. ++-.....+++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4789999999999999888777 479999999888776554 344578999999988
Q ss_pred CCeEEEEeCCCcEEEEeCCCCC-CCCCccccceeeecccccccccccccccceecccccccEEEEEEee-cCCEEEEEee
Q 010390 163 SDILVSGSRDGSFAIWDLRCKS-SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASA 240 (512)
Q Consensus 163 ~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~ 240 (512)
+++++...++.|++||..... ........ ........+......++++| ++..+++ .+
T Consensus 103 -~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~------------------~~~g~~~~~~~~P~~ia~~~~~g~lyv~-d~ 162 (329)
T 3fvz_A 103 -NYWVTDVALHQVFKLDPHSKEGPLLILGRS------------------MQPGSDQNHFCQPTDVAVEPSTGAVFVS-DG 162 (329)
T ss_dssp -CEEEEETTTTEEEEECTTCSSCCSEEESBT------------------TBCCCSTTCCSSEEEEEECTTTCCEEEE-EC
T ss_pred -CEEEEECCCCEEEEEeCCCCeEEEEEeccc------------------CCCCCCccccCCCcEEEEeCCCCeEEEE-eC
Confidence 788888888999999986432 11100000 00000012344688999999 5555554 53
Q ss_pred -cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeece
Q 010390 241 -VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR 318 (512)
Q Consensus 241 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 318 (512)
.++.|++||.. +............. .....+......++++++ +.++++...++.|++||..++ ..+..+....
T Consensus 163 ~~~~~I~~~~~~-g~~~~~~~~~g~~~-~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G--~~~~~~~~~~ 238 (329)
T 3fvz_A 163 YCNSRIVQFSPS-GKFVTQWGEESSGS-SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK--EFVREIKHAS 238 (329)
T ss_dssp SSCCEEEEECTT-SCEEEEECEECCSS-SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEECCTT
T ss_pred CCCCeEEEEcCC-CCEEEEeccCCCCC-CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC--cEEEEEeccc
Confidence 58999999943 44333221100000 000123345789999998 777777778899999998632 3334443222
Q ss_pred eceeEEEEEECC------CCCEEEEecCCCCEEEEecCCCCCCCcee---ccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390 319 IESFYVKSEICP------NASHILSGSSDGNAYVWQVNKPQADPIKL---KSHDGEVTAVNWCPNEAGKIVTSSDDYTVR 389 (512)
Q Consensus 319 ~~~~~~~~~~s~------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 389 (512)
....+..++++| +++..++...+..|++|+..+++.. ..+ .++...+.+|+++|+| .++++...++.|+
T Consensus 239 ~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-DVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE-EEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEE
T ss_pred cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-EEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEE
Confidence 233455678888 4444444445568999999887652 344 3566789999999999 8999999999999
Q ss_pred EEeCCCC
Q 010390 390 LWSLENS 396 (512)
Q Consensus 390 vwd~~~~ 396 (512)
+|++...
T Consensus 317 ~~~~~~~ 323 (329)
T 3fvz_A 317 KFTLTEK 323 (329)
T ss_dssp EEEEEEC
T ss_pred EEeCCcc
Confidence 9998653
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=7.4e-16 Score=143.05 Aligned_cols=274 Identities=10% Similarity=0.008 Sum_probs=183.4
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
..|.++.| ++++..++....++.++.|.- .....+..+...+.+++|++++++++++..++
T Consensus 6 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 66 (333)
T 2dg1_A 6 QDLPTLFY---SGKSNSAVPIISESELQTITA----------------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEG 66 (333)
T ss_dssp CCCCBCCS---CGGGGCSSCCCCGGGSCEEEC----------------EEEEEEESSCCCEEEEEECTTSCEEEEETTTC
T ss_pred cccceeee---cCCccceeEEeecccCccccc----------------ceeEEEeccCccccCcEECCCCCEEEEECCCC
Confidence 34677777 888888887788889999932 11444556777889999999999878888899
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
.|.+||..+++.......+...+.++++++++ +++++...+ +.|.+||..++......
T Consensus 67 ~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~----------------- 128 (333)
T 2dg1_A 67 NIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDII----------------- 128 (333)
T ss_dssp EEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEE-----------------
T ss_pred EEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEE-----------------
Confidence 99999998887655444566789999999988 777777666 68999998765432100
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEee-----cCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASA-----VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
........+.+++++|++..+++... ..+.|..+|..+.+... .......+..++
T Consensus 129 --------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~i~ 188 (333)
T 2dg1_A 129 --------EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP------------IIQNISVANGIA 188 (333)
T ss_dssp --------CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE------------EEEEESSEEEEE
T ss_pred --------ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE------------eecCCCcccceE
Confidence 00012346889999999987765331 03567777665433221 112223478899
Q ss_pred eCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeee-----eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390 282 QDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFS-----GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD 355 (512)
Q Consensus 282 ~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 355 (512)
|+++++.|+.+ ..++.|.+||+.... .....+. ..........++++++|+++++...++.|.+||.. ++.
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~- 265 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYP- 265 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCE-
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCC-cCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCE-
Confidence 99999866554 467899999985321 1111110 00111245679999999988887778889999984 332
Q ss_pred Cceecccc------CCeEEEEeCCCCCCeEEEEeCC
Q 010390 356 PIKLKSHD------GEVTAVNWCPNEAGKIVTSSDD 385 (512)
Q Consensus 356 ~~~~~~h~------~~v~~v~~~~~~~~~l~s~~~d 385 (512)
...+..+. ..+.+++|+|++ ..|+.++.+
T Consensus 266 ~~~~~~~~~~~g~~~~~~~~~~~~dg-~~L~v~~~~ 300 (333)
T 2dg1_A 266 IGQILIPGRDEGHMLRSTHPQFIPGT-NQLIICSND 300 (333)
T ss_dssp EEEEECTTGGGTCSCBCCEEEECTTS-CEEEEEEEC
T ss_pred EEEEEcCCCccccccCcceEEECCCC-CEEEEEeCc
Confidence 23333332 268999999997 556554444
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=5.4e-16 Score=145.06 Aligned_cols=282 Identities=12% Similarity=0.063 Sum_probs=179.7
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceecccc------C
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVA------H 107 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------h 107 (512)
.....+..+ .+++ +|||++|+++. .++.|.+||..+.+. +.++.. +
T Consensus 45 ~~i~~g~~p--~i~~---spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-------------~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 45 GMVPTAFNG--HVQV---SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-------------EKEISLPPKRVQG 106 (361)
T ss_dssp EEEECCEEE--EEEE---CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-------------EEEEEECTTBCCB
T ss_pred EEecCCCCC--ceEE---CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-------------EEEEEcCcccccc
Confidence 334444444 6777 99999999986 367899999876543 222211 2
Q ss_pred CCcEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCeeeec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390 108 QNAIFDLCWIKEDTNILTASG--DQTIKIWDAEKKKCTGA-LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS 184 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 184 (512)
......++++|||++|+++.. +++|.+||+.+++.+.. +.. . ....+.+.|++...+++.+.||.+.+|++....
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 345667999999999998864 68999999999998877 653 2 233456788776788999999999999986422
Q ss_pred CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390 185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA 264 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 264 (512)
..... ... ...+.....+ ..+.+.+++..++... .++.|.++|+..............
T Consensus 185 ~~~~~-----~~~---------------~~~~~~~~~~-~~~~~~~~g~~~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~ 242 (361)
T 2oiz_A 185 KVASQ-----SRS---------------KQMFSVKDDP-IFIAPALDKDKAHFVS-YYGNVYSADFSGDEVKVDGPWSLL 242 (361)
T ss_dssp SEEEE-----EEC---------------CCCSCTTTSC-BCSCCEECSSEEEEEB-TTSEEEEEECSSSSCEEEEEEESC
T ss_pred cEeee-----ccc---------------cceEcCCCCc-eEEEecccCCEEEEEe-CCCeEEEEEecCCCceeccccccc
Confidence 11100 000 0000011111 1223356676666644 688999999875442211000000
Q ss_pred cc-cccccccccCeeEEEeCCCCCEEEEEec-----------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390 265 ES-SSAKETRLHGISSLSQDSNGVFLTASCM-----------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332 (512)
Q Consensus 265 ~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 332 (512)
.. .............+++++++..++++.. .+.|.+||+.+. +.+..+..+. ...++|+|+|
T Consensus 243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~~----p~~ia~spdg 316 (361)
T 2oiz_A 243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGRD----ALSMTIDQQR 316 (361)
T ss_dssp CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECTT----CCEEEEETTT
T ss_pred CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecCC----eeEEEECCCC
Confidence 00 0000001122334789999888887654 358999998663 3444444432 5679999999
Q ss_pred CEEEEecCCCCEEEEecCCC--CCCCceeccccCCeEEEEeCCCC
Q 010390 333 SHILSGSSDGNAYVWQVNKP--QADPIKLKSHDGEVTAVNWCPNE 375 (512)
Q Consensus 333 ~~l~~g~~dg~i~iw~~~~~--~~~~~~~~~h~~~v~~v~~~~~~ 375 (512)
++|++++. +.|.+||..++ +. +..+..+......++++|+|
T Consensus 317 ~~l~v~n~-~~v~v~D~~t~~l~~-~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 317 NLMLTLDG-GNVNVYDISQPEPKL-LRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp TEEEEECS-SCEEEEECSSSSCEE-EEEETTSCSSEEEEEECCCS
T ss_pred CEEEEeCC-CeEEEEECCCCccee-eEEeccCCCCcEEEEecCCC
Confidence 99998886 99999999987 54 34445667788999999998
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1.3e-15 Score=140.90 Aligned_cols=257 Identities=9% Similarity=0.041 Sum_probs=172.0
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCC------------------------CcEEEEECCCCCCccccccccccccceecc-
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDED------------------------GYVSLFDSRRKLPSFACHRENAEKARISDW- 104 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~- 104 (512)
-+.+.+|++ +|+|+++++...+ +.|.+||..++.. +..+
T Consensus 23 l~~v~~va~---d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-------------~~~~~ 86 (329)
T 3fvz_A 23 PGQVSGVAL---DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-------------LQSSG 86 (329)
T ss_dssp CSCEEEEEE---CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-------------EEEEC
T ss_pred cCCceEEEE---CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-------------EeccC
Confidence 355778888 9999999888777 4799999876542 2222
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-eeecc---------cCcCCCEEEEEeeCCCCCeEEEEe-CCC
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-CTGAL---------MGHTGSIKSLCSHPTNSDILVSGS-RDG 173 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~l~~~~~~~~~l~s~~-~dg 173 (512)
.++-.....++++++|+++++...++.|++||..... .+..+ ..+-.....++++|+++.++++.+ .++
T Consensus 87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 2445689999999999988888889999999976542 34444 234457899999994437888876 689
Q ss_pred cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL 253 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~ 253 (512)
.|++||.. +........ . .........+-.....++++|++..++++...++.|++||..++
T Consensus 167 ~I~~~~~~-g~~~~~~~~---------~--------g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G 228 (329)
T 3fvz_A 167 RIVQFSPS-GKFVTQWGE---------E--------SSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK 228 (329)
T ss_dssp EEEEECTT-SCEEEEECE---------E--------CCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEcCC-CCEEEEecc---------C--------CCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence 99999943 321111000 0 00000001223358899999996667766778899999999876
Q ss_pred cceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-------ecCCeEEEEEcccCCCCceEeeee-ceeceeEEE
Q 010390 254 KAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-------CMDHRIYLYNVLQLDKGPIQHFSG-CRIESFYVK 325 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-------~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~ 325 (512)
+...... ...+...+..++++| +..+.+. ..+..|++||..+.. .+..+.. .........
T Consensus 229 ~~~~~~~---------~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~--~~~~~~~~~~~~~~p~~ 296 (329)
T 3fvz_A 229 EFVREIK---------HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE--IIDVFKPVRKHFDMPHD 296 (329)
T ss_dssp CEEEEEC---------CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC--EEEEECCSSSCCSSEEE
T ss_pred cEEEEEe---------ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe--EEEEEcCCCCccCCeeE
Confidence 6554331 123345677888888 4333333 334589999986532 3333321 122334678
Q ss_pred EEECCCCCEEEEecCCCCEEEEecCCC
Q 010390 326 SEICPNASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 326 ~~~s~~~~~l~~g~~dg~i~iw~~~~~ 352 (512)
++++|+|.++++...++.|++|++...
T Consensus 297 ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 297 IVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 999999988888888999999998653
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.72 E-value=2.3e-15 Score=154.49 Aligned_cols=255 Identities=7% Similarity=-0.037 Sum_probs=169.3
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc------
Q 010390 106 AHQNAIFDLCWIKEDTNILTASGDQ-----TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS------ 174 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~------ 174 (512)
+|...+..++|||||++|+.+..++ .|++||+.+++.......+ ..+..++|+|++ +.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg-~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDG-KGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTS-SEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCC-CEEEEEEECCccccccc
Confidence 4555789999999999999665533 8999999999876543222 236679999998 77777777665
Q ss_pred ----------EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec---
Q 010390 175 ----------FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV--- 241 (512)
Q Consensus 175 ----------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~--- 241 (512)
|++|++.++..... .+.....+...+..+.|+|+++.++++...
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~-----------------------~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 256 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDI-----------------------LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCE-----------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred cccccCCCCEEEEEECCCCcccce-----------------------EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence 99999876532100 000111234457889999999999886642
Q ss_pred -CCeEEEEeccC------ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC----CeEEEEEcccCCCCc
Q 010390 242 -NSIVKFWDTRN------LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD----HRIYLYNVLQLDKGP 310 (512)
Q Consensus 242 -dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~ 310 (512)
+..|++||+.+ +..... .+..+...+.. .|+++|..|+..+.. +.|.+||+.+.....
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~~~~~----------~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~ 325 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGILKWV----------KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK 325 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSSCCCE----------EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG
T ss_pred CccEEEEEECcccccccCCccceE----------EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc
Confidence 56899999986 321111 12222333333 478888877766543 369999986643222
Q ss_pred eEeeeeceeceeEEEEEECCCCCEEEEecCCCC--EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe---CC
Q 010390 311 IQHFSGCRIESFYVKSEICPNASHILSGSSDGN--AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DD 385 (512)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~--i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~---~d 385 (512)
...+..+.....+..++|++++.++++...++. |++|++.+++. ...+..+.+.|..+.++|++..++++.+ ..
T Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~-~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 404 (710)
T 2xdw_A 326 WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL-LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSP 404 (710)
T ss_dssp CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE-EEEECCCSSEEEEEECCTTCSEEEEEEECSSCC
T ss_pred ceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE-EEecCCCCceEEEEecCCCCCEEEEEEeCCCCC
Confidence 233433332234666888878888888888885 55666655543 3456667788999999998833444433 45
Q ss_pred CcEEEEeCCCCc
Q 010390 386 YTVRLWSLENSR 397 (512)
Q Consensus 386 g~i~vwd~~~~~ 397 (512)
+.|++||+.+++
T Consensus 405 ~~i~~~d~~tg~ 416 (710)
T 2xdw_A 405 GIIYHCDLTKEE 416 (710)
T ss_dssp CEEEEEETTSSS
T ss_pred CEEEEEECCCCc
Confidence 799999999887
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=3.4e-17 Score=155.99 Aligned_cols=259 Identities=8% Similarity=-0.013 Sum_probs=156.6
Q ss_pred EEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390 111 IFDLCWIKEDTNILTASGD---QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK 187 (512)
Q Consensus 111 V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 187 (512)
+..++|+|||++|+..... ..|.+||+.+++......++......+.|+|++ +.|+.++.++.|.+||+.+++...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCcEE
Confidence 6778999999998876543 468899998887655444333323347899998 888888888899999998765322
Q ss_pred CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe----ecCCeEEEEeccCccceecccCCC
Q 010390 188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS----AVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g----~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
....... ....+............ ......+.|+|+++.+++.. ..+..|.+||+.+++...
T Consensus 117 ~~~~~~~-----~~~~g~~l~~~~~~~~~---~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~------ 182 (396)
T 3c5m_A 117 IYTVDEE-----WKGYGTWVANSDCTKLV---GIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV------ 182 (396)
T ss_dssp EEECCTT-----EEEEEEEEECTTSSEEE---EEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE------
T ss_pred EEecccc-----cCCCCCEEEeccCCccc---cccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe------
Confidence 1110000 00000000000000000 00001134667777665432 356789999998766432
Q ss_pred ccccccccccccCeeEEEeCC-CCCEEEEEecC------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390 264 AESSSAKETRLHGISSLSQDS-NGVFLTASCMD------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL 336 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 336 (512)
...+...+..+.|+| ++..|+..+.+ ..|.+||+.... ...+........+..++|+|+|++|+
T Consensus 183 ------~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~ 253 (396)
T 3c5m_A 183 ------IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWIPDGSAMA 253 (396)
T ss_dssp ------EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEECTTSSCEE
T ss_pred ------eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEECCCCCEEE
Confidence 223445688999999 78877766543 368888875432 12222211123466789999999887
Q ss_pred EecCC-----CCEEEEecCCCCCCCceeccccCCeEEEEeCC-CCCCeEEEEe----------------CCCcEEEEeCC
Q 010390 337 SGSSD-----GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP-NEAGKIVTSS----------------DDYTVRLWSLE 394 (512)
Q Consensus 337 ~g~~d-----g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~l~s~~----------------~dg~i~vwd~~ 394 (512)
.++.+ +.|++||+.+++.. .+.... ... +.|+| ++ .++++++ .++.|++||+.
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~-~~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 254 YVSYFKGQTDRVIYKANPETLENE--EVMVMP-PCS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp EEEEETTTCCEEEEEECTTTCCEE--EEEECC-SEE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred EEecCCCCccceEEEEECCCCCeE--EeeeCC-CCC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 66543 34999999876542 222112 233 88999 99 6777654 34789999998
Q ss_pred CCcc
Q 010390 395 NSRC 398 (512)
Q Consensus 395 ~~~~ 398 (512)
+++.
T Consensus 329 ~~~~ 332 (396)
T 3c5m_A 329 AKSA 332 (396)
T ss_dssp TTBC
T ss_pred cCce
Confidence 8764
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=9.3e-15 Score=143.58 Aligned_cols=298 Identities=11% Similarity=0.032 Sum_probs=200.0
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECC--CCCCccccccccccccceeccccCCCcEEEEEEe----cCCCEEEEE
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR--RKLPSFACHRENAEKARISDWVAHQNAIFDLCWI----KEDTNILTA 126 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~~~l~s~ 126 (512)
+..+.+ ||||+++++++.|+.|.+||+. +.+ .+.++... .....++|+ |||++++++
T Consensus 199 p~~v~~---SpDGr~lyv~~~dg~V~viD~~~~t~~-------------~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~ 261 (567)
T 1qks_A 199 VHISRL---SASGRYLFVIGRDGKVNMIDLWMKEPT-------------TVAEIKIG-SEARSIETSKMEGWEDKYAIAG 261 (567)
T ss_dssp EEEEEE---CTTSCEEEEEETTSEEEEEETTSSSCC-------------EEEEEECC-SEEEEEEECCSTTCTTTEEEEE
T ss_pred ccceEE---CCCCCEEEEEcCCCeEEEEECCCCCCc-------------EeEEEecC-CCCceeEEccccCCCCCEEEEE
Confidence 345555 9999999999999999999985 332 23344332 346799999 699998876
Q ss_pred eC-CCcEEEEeCCCCeeeecccC----------cCC-CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 127 SG-DQTIKIWDAEKKKCTGALMG----------HTG-SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 127 ~~-dg~i~iwd~~~~~~~~~~~~----------h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
.. +++|.|+|..+.+.+..+.. |.. .+..+..+++++.++++...+|.|.++|.........
T Consensus 262 n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v------ 335 (567)
T 1qks_A 262 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT------ 335 (567)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE------
T ss_pred EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee------
Confidence 65 59999999999988776542 222 6788889988766777777789999999875431100
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL 274 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
..........++.|+|++++++++...++.|.++|+.+++......... ...|.
T Consensus 336 --------------------~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg------~~Php 389 (567)
T 1qks_A 336 --------------------TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG------QTPHP 389 (567)
T ss_dssp --------------------EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS------SSBCC
T ss_pred --------------------eeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC------cCCCC
Confidence 0011223466789999999999887778999999999887654331100 01111
Q ss_pred cCeeEEE-eCCCCCEEE-EEe-cCCeEEEEEcccCC-----CCceEeeeeceeceeEEEEEECCCCCEEEEecC------
Q 010390 275 HGISSLS-QDSNGVFLT-ASC-MDHRIYLYNVLQLD-----KGPIQHFSGCRIESFYVKSEICPNASHILSGSS------ 340 (512)
Q Consensus 275 ~~i~~~~-~~~~~~~l~-~~~-~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------ 340 (512)
+ .... ++|++..++ ++. .++.|.++|..... .+.+..+...... -..+..+|+++++.+...
T Consensus 390 g--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g--~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 390 G--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp T--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEECCTTCSEEEEECTTCSSHH
T ss_pred c--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC--CEEEEeCCCCCeEEEecCCCCCcc
Confidence 1 1222 578755444 443 46899999986532 2334444433211 122678999999987653
Q ss_pred -CCCEEEEecCCC-----CCCCceec--------cccCCeEEEEeCCCCCCeEEEEe----CCCcEEEEeCCCCcccccc
Q 010390 341 -DGNAYVWQVNKP-----QADPIKLK--------SHDGEVTAVNWCPNEAGKIVTSS----DDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 341 -dg~i~iw~~~~~-----~~~~~~~~--------~h~~~v~~v~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~~~~~ 402 (512)
.++|.++|+.+. ......+. .-...+..+.|+++|...++|.. .++.|.|+|..+++++...
T Consensus 466 ~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 466 ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 358999999876 22112221 11347899999999955555543 3799999999999887764
Q ss_pred c
Q 010390 403 S 403 (512)
Q Consensus 403 ~ 403 (512)
.
T Consensus 546 ~ 546 (567)
T 1qks_A 546 K 546 (567)
T ss_dssp C
T ss_pred C
Confidence 4
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.72 E-value=6.9e-14 Score=127.44 Aligned_cols=287 Identities=8% Similarity=-0.000 Sum_probs=189.9
Q ss_pred cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390 46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT 125 (512)
Q Consensus 46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s 125 (512)
+..+...+.+|.+ +++|+++++...++.|.+||.. +... ......+...+.++++.+++..+++
T Consensus 10 ~~~~~~~~~~i~~---d~~g~l~v~~~~~~~v~~~d~~-~~~~------------~~~~~~~~~~~~~i~~~~~g~l~v~ 73 (299)
T 2z2n_A 10 LTNQDTGPYGITV---SDKGKVWITQHKANMISCINLD-GKIT------------EYPLPTPDAKVMCLTISSDGEVWFT 73 (299)
T ss_dssp CCSSSCCEEEEEE---CTTSCEEEEETTTTEEEEECTT-CCEE------------EEECSSTTCCEEEEEECTTSCEEEE
T ss_pred CCCcCCCccceEE---CCCCCEEEEecCCCcEEEEcCC-CCeE------------EecCCcccCceeeEEECCCCCEEEe
Confidence 3345567888888 9999988877768899999987 3210 1111234578999999999988887
Q ss_pred EeCCCcEEEEeCCCCee-eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 126 ASGDQTIKIWDAEKKKC-TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 126 ~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
...++.|..||.. ++. ...+......+.++++.+++ .++++...++.|..||. ++.....
T Consensus 74 ~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~---------------- 134 (299)
T 2z2n_A 74 ENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREY---------------- 134 (299)
T ss_dssp ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE----------------
T ss_pred CCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEe----------------
Confidence 7768889999976 332 22222345578999999977 77777777889999997 3321100
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (512)
........+..+++.+++..+++ ...++.|..||. +++.... ........+..+++++
T Consensus 135 ----------~~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~~~~~-~g~~~~~----------~~~~~~~~~~~i~~~~ 192 (299)
T 2z2n_A 135 ----------ELPNKGSYPSFITLGSDNALWFT-ENQNNAIGRITE-SGDITEF----------KIPTPASGPVGITKGN 192 (299)
T ss_dssp ----------ECSSTTCCEEEEEECTTSCEEEE-ETTTTEEEEECT-TCCEEEE----------ECSSTTCCEEEEEECT
T ss_pred ----------cCCCCCCCCceEEEcCCCCEEEE-eCCCCEEEEEcC-CCcEEEe----------eCCCCCCcceeEEECC
Confidence 00112346889999999876654 435689999998 5443321 0112234578899999
Q ss_pred CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccC
Q 010390 285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDG 364 (512)
Q Consensus 285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~ 364 (512)
++.++++...++.|.+||. +.. ...+........+..++++++|+++++...++.|..||.. +.........+..
T Consensus 193 ~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~ 267 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT-SGE---ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSA 267 (299)
T ss_dssp TSSEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSC
T ss_pred CCCEEEEccCCceEEEECC-CCc---EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCC
Confidence 9997777667889999997 322 2222222122456789999999977776677889999983 3321111234456
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 365 EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 365 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
.+.++++ +++ .++++.+ .+.|..++..+++
T Consensus 268 ~~~~i~~-~~g-~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 268 EPHGICF-DGE-TIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp CEEEEEE-CSS-CEEEEET-TTEEEEEEEC---
T ss_pred ccceEEe-cCC-CEEEEec-CCcEEEEEcCccc
Confidence 7999999 877 6666655 5667777877654
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=4.2e-15 Score=138.77 Aligned_cols=252 Identities=9% Similarity=0.059 Sum_probs=160.4
Q ss_pred CCcEEEEee---------CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---C-
Q 010390 64 NSHIFAVSD---------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---Q- 130 (512)
Q Consensus 64 ~~~~latg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g- 130 (512)
||+++|... .++.|.+||+.++.. ..+ ..+..++|+|||++|+.++.+ +
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------------~~l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--------------RFI----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--------------EEE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCce--------------EEc----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 777776642 256799999876532 122 468889999999999977654 2
Q ss_pred -cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---------------------------CcEEEEeCCC
Q 010390 131 -TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---------------------------GSFAIWDLRC 182 (512)
Q Consensus 131 -~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---------------------------g~i~vwd~~~ 182 (512)
.|.+||+.+++.......+ . +..+.|+|++ +.|+.++.+ ..|.+||+.+
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAK-N-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp EEEEEEETTTTEEEEEEEES-E-EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred ceEEEEECCCCceEEEEcCC-C-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 4888899888766554433 3 9999999998 666666532 4677788765
Q ss_pred CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC------C-eEEEEeccCccc
Q 010390 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN------S-IVKFWDTRNLKA 255 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d------g-~i~iwd~~~~~~ 255 (512)
++.. ..+.. . .+..+.|+|++ .+++ +..+ . ...+|.+++++.
T Consensus 162 ~~~~---------------------------~~l~~-~-~~~~~~~spdg-~~~~-~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 162 EEVI---------------------------EEFEK-P-RFSSGIWHRDK-IVVN-VPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp TEEE---------------------------EEEEE-E-TTCEEEEETTE-EEEE-EECCCSSCCSSCCEEEEEEETTEE
T ss_pred CeEE---------------------------eeecC-C-CcccccCCCCe-EEEE-EecccccccccccccEEEeCCCce
Confidence 4310 01111 2 57788999999 5554 4333 2 334444443322
Q ss_pred eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC--------CeEEEEEcccCCCCceEeeeeceeceeEEE-E
Q 010390 256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD--------HRIYLYNVLQLDKGPIQHFSGCRIESFYVK-S 326 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~ 326 (512)
. .+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| .. . ...+... ....+.. +
T Consensus 211 ~------------~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~--~-~~~l~~~-~~~~~~~~~ 269 (347)
T 2gop_A 211 E------------KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK--E-VMGILDE-VDRGVGQAK 269 (347)
T ss_dssp E------------EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS--C-EEESSTT-CCSEEEEEE
T ss_pred E------------EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC--c-eEecccc-CCcccCCcc
Confidence 1 12222 334443 8999988877644 3688887 21 1 1222111 1223444 7
Q ss_pred EECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcE-EEEeCCCCc
Q 010390 327 EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTV-RLWSLENSR 397 (512)
Q Consensus 327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i-~vwd~~~~~ 397 (512)
.|+ ++ ++++++.++.++|| +.+++. ..+..+.+.|.+++|+| . ++++++.++.. .+|.++ ++
T Consensus 270 ~~s-dg-~~~~~~~~~~~~l~-~~~g~~--~~~~~~~~~v~~~~~s~-~--~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 270 IKD-GK-VYFTLFEEGSVNLY-IWDGEI--KPIAKGRHWIMGFDVDE-I--VVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EET-TE-EEEEEEETTEEEEE-EESSSE--EEEECSSSEEEEEEESS-S--EEEEEECSSSCCEEEEES-SS
T ss_pred EEc-Cc-EEEEEecCCcEEEE-EcCCce--EEEecCCCeEEeeeeeC-c--EEEEEcCCCChHHheEeC-Cc
Confidence 899 88 88899999999999 874332 34445678899999999 4 77777766654 777776 54
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.70 E-value=1e-15 Score=156.56 Aligned_cols=284 Identities=8% Similarity=-0.008 Sum_probs=176.7
Q ss_pred cCCCcEEEEeeCCC---cEEEEEC--CCCCCccccccccccccceec----cccCCCcEEEEEEecCCCEEE-----EEe
Q 010390 62 SKNSHIFAVSDEDG---YVSLFDS--RRKLPSFACHRENAEKARISD----WVAHQNAIFDLCWIKEDTNIL-----TAS 127 (512)
Q Consensus 62 s~~~~~latg~~dg---~i~iwd~--~~~~~~~~~~~~~~~~~~~~~----~~~h~~~V~~l~~s~~~~~l~-----s~~ 127 (512)
+|+|++++....++ .-.||-. ..+.. ..+.. ..+|...+.+++|||||++|+ .|+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~ 144 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQE-----------KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA 144 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCC-----------EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCc-----------EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC
Confidence 57898888765543 3445543 33221 11211 135666899999999999999 344
Q ss_pred CCCcEEEEeCCCCeee-ec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCc-------------EEEEeCCCCCCCCCcccc
Q 010390 128 GDQTIKIWDAEKKKCT-GA-LMGHTGSIKSLCSHPTNSDILVSGSRDGS-------------FAIWDLRCKSSPKSNCAE 192 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~-~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~~~~~~~~~~ 192 (512)
.+..|++||+.+++.+ .. +... ....++|+|++ ..|+.++.|.. |++|++.++.....
T Consensus 145 ~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~---- 217 (695)
T 2bkl_A 145 DEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT---- 217 (695)
T ss_dssp SCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE----
T ss_pred ceEEEEEEECCCCCCcCCcccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce----
Confidence 4578999999999865 21 1111 12678999998 78888887765 99999976542110
Q ss_pred ceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-C--eEEEEeccCccceecccCCCcccccc
Q 010390 193 SFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-S--IVKFWDTRNLKAQITQAWPHAESSSA 269 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~ 269 (512)
.+.....+...+.++.|+|+|+.++++...+ + .|.+||..++... .
T Consensus 218 -------------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~------------~ 266 (695)
T 2bkl_A 218 -------------------VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR------------L 266 (695)
T ss_dssp -------------------EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE------------E
T ss_pred -------------------EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE------------E
Confidence 0111123345788999999999998866433 2 5666655443222 1
Q ss_pred ccccccCeeEEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390 270 KETRLHGISSLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV 346 (512)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 346 (512)
+..+...+....+ ++|.+++.+. .++.|.+||+.+........+..+.....+..++++ ++.++++...|+..+|
T Consensus 267 l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 2233334555555 5666444443 258899999866432222333333223345567777 6778888888998888
Q ss_pred EecCC-CCCCCceeccc-cCCeEEEEeCCCCCCeEE-EEe---CCCcEEEEeCCCCcc
Q 010390 347 WQVNK-PQADPIKLKSH-DGEVTAVNWCPNEAGKIV-TSS---DDYTVRLWSLENSRC 398 (512)
Q Consensus 347 w~~~~-~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~-s~~---~dg~i~vwd~~~~~~ 398 (512)
|.+.. ++. ...+..+ .+.|..++++|++ ..++ +.+ ..+.|++||+.+++.
T Consensus 345 ~~~~~~g~~-~~~l~~~~~~~v~~~~~s~d~-~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 345 RVATLKGKP-VRTVQLPGVGAASNLMGLEDL-DDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEETTCCE-EEECCCSSSSEECCCBSCTTC-SEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEeCCCCe-eEEecCCCCeEEEEeecCCCC-CEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 86652 322 2334334 5678889999988 5554 333 457899999998774
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=1.2e-14 Score=134.07 Aligned_cols=278 Identities=10% Similarity=0.005 Sum_probs=180.6
Q ss_pred CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCC
Q 010390 73 EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGS 152 (512)
Q Consensus 73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~ 152 (512)
.++.|.+||.++++........ ..-.........+.+. +++.+++...++.|.+||..+++.+.++. ....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~-------~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR-------ANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTS 85 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH-------HHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSS
T ss_pred CCceEEEEECCCCEEhhhhHhh-------hcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCC
Confidence 4889999999876432111000 0001222456778774 44555566668999999999999988885 3467
Q ss_pred EEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecC
Q 010390 153 IKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE 232 (512)
Q Consensus 153 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 232 (512)
...+++++++ .++++...++.|.+||..+.+........ ...........+++ ++
T Consensus 86 p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g----------------------~~~~~~~~p~~i~~--~~ 140 (328)
T 3dsm_A 86 PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECP----------------------DMDMESGSTEQMVQ--YG 140 (328)
T ss_dssp EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECT----------------------TCCTTTCBCCCEEE--ET
T ss_pred CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcC----------------------CccccCCCcceEEE--EC
Confidence 8899998887 66666558899999999865432111000 00000113445666 45
Q ss_pred CEEEEEee-cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC----------CeEEEE
Q 010390 233 VSIATASA-VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD----------HRIYLY 301 (512)
Q Consensus 233 ~~l~~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~ 301 (512)
..++++.. .++.|.++|+.+++....... ......+.++++|++++++..+ +.|.++
T Consensus 141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 141 KYVYVNCWSYQNRILKIDTETDKVVDELTI------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp TEEEEEECTTCCEEEEEETTTTEEEEEEEC------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred CEEEEEcCCCCCEEEEEECCCCeEEEEEEc------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence 56666554 488999999998776543211 1235678899999977776554 789999
Q ss_pred EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce-eccccCCeEEEEeCCCCCCeEE
Q 010390 302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK-LKSHDGEVTAVNWCPNEAGKIV 380 (512)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l~ 380 (512)
|..+.+ ....+.. ........++++|++++|+++.. .|.+||..+++..... ...+.....+++++|++..+++
T Consensus 209 d~~t~~--v~~~~~~-~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyv 283 (328)
T 3dsm_A 209 DAETFT--VEKQFKF-KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYV 283 (328)
T ss_dssp ETTTTE--EEEEEEC-CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEE
T ss_pred ECCCCe--EEEEEec-CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEE
Confidence 986532 2222221 11124567999999999887754 8999999877642211 2222467899999995537777
Q ss_pred EE----eCCCcEEEEeCCCCcccccc
Q 010390 381 TS----SDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 381 s~----~~dg~i~vwd~~~~~~~~~~ 402 (512)
+. ..++.|.+||.+ ++.+..+
T Consensus 284 a~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 284 ADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp EECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred EcccccccCCEEEEECCC-CCEEEEE
Confidence 77 678999999998 7766653
No 183
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=1.9e-15 Score=154.08 Aligned_cols=244 Identities=9% Similarity=-0.008 Sum_probs=148.6
Q ss_pred cCCCcE-EEEeeC-CCcEEEEECC--C-CCCccccccccccccceecccc-----CCCcEEEEEEecCCCEEEEEeCC--
Q 010390 62 SKNSHI-FAVSDE-DGYVSLFDSR--R-KLPSFACHRENAEKARISDWVA-----HQNAIFDLCWIKEDTNILTASGD-- 129 (512)
Q Consensus 62 s~~~~~-latg~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~-----h~~~V~~l~~s~~~~~l~s~~~d-- 129 (512)
||||++ ||.+.. +..|.+|++. + +. ...+.. |...+.+++|+|||+.|++++.+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~--------------~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~ 152 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV--------------PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT 152 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCC--------------CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCC--------------CEeccCCccCCCCccccCcEECCCCCEEEEEEeccc
Confidence 499998 776653 5667777765 2 32 222333 67789999999999999988876
Q ss_pred --------CcEEEEeCCC------Ceeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCC--------CcEEEEeCC-CCCC
Q 010390 130 --------QTIKIWDAEK------KKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRD--------GSFAIWDLR-CKSS 185 (512)
Q Consensus 130 --------g~i~iwd~~~------~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vwd~~-~~~~ 185 (512)
..|++||+.+ ++.. .+. .+...+..++|+|++ +.|+.++.+ ..|.+||+. ++..
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred CCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 5899999988 5543 444 556678889999998 777776644 379999987 3310
Q ss_pred CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCC
Q 010390 186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~ 263 (512)
. ........+...+..+.|+|+|+ +++++..++ .|.+||+.+++...... ..
T Consensus 231 ~------------------------~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~ 284 (662)
T 3azo_A 231 A------------------------DTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR-RE 284 (662)
T ss_dssp E------------------------EEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC-CS
T ss_pred c------------------------ccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc-cc
Confidence 0 00011123356789999999999 555565777 67777765554332111 00
Q ss_pred ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEE-EECCCCCEEEEecCCC
Q 010390 264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS-EICPNASHILSGSSDG 342 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~g~~dg 342 (512)
... ....-...+..++|++++.+++++.. +.+++|.+... ......+..+. ..+..+ +++.+.-++++++.+.
T Consensus 285 ~~~--~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~-~~~~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~ 358 (662)
T 3azo_A 285 EEF--AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE-SGELVDAAGPW--TEWAATLTVSGTRAVGVAASPRT 358 (662)
T ss_dssp SBS--SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT-TTEEEECCSSC--CEEEEEEEEETTEEEEEEEETTE
T ss_pred ccc--cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC-CCcEEEecCCC--CeEEEEEecCCCEEEEEEcCCCC
Confidence 000 00000112567899999999999988 99999954321 12234443332 223334 4433333344455554
Q ss_pred C--EEEEecCCCC
Q 010390 343 N--AYVWQVNKPQ 353 (512)
Q Consensus 343 ~--i~iw~~~~~~ 353 (512)
. |.++|+.+++
T Consensus 359 ~~~i~~~d~~~g~ 371 (662)
T 3azo_A 359 AYEVVELDTVTGR 371 (662)
T ss_dssp EEEEEEEETTTCC
T ss_pred CCEEEEEECCCCc
Confidence 4 5555655554
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=8.7e-15 Score=133.28 Aligned_cols=252 Identities=8% Similarity=-0.057 Sum_probs=169.0
Q ss_pred eeccccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 101 ISDWVAHQNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
+..+..+.....+++|+|+++ .++++..++.|..||..++ ...+..+...+.++++++++ .++++...++.|.+||
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQR 96 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEc
Confidence 444555667889999999998 6778888999999999877 55666677789999999988 7777776678999999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE---ee-------------cCC
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA---SA-------------VNS 243 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---g~-------------~dg 243 (512)
..+++....... ........+..++++|+|..+++. |. ..+
T Consensus 97 ~~~g~~~~~~~~-----------------------~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 97 EPGGEWESIADS-----------------------FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp STTCCEEEEECE-----------------------ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred CCCCcEEEEeec-----------------------cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence 876542110000 000112346789999999877653 21 134
Q ss_pred eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc-CCC-CceEeeeeceece
Q 010390 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ-LDK-GPIQHFSGCRIES 321 (512)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~~~ 321 (512)
.|..++.. ++.. ...........++|+|+++.|++.+.++.|.+||+.. ... .....+ .....
T Consensus 154 ~l~~~~~~-g~~~------------~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~ 218 (296)
T 3e5z_A 154 WVFRLAPD-GTLS------------APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPG 218 (296)
T ss_dssp EEEEECTT-SCEE------------EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSS
T ss_pred EEEEECCC-CCEE------------EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCC
Confidence 56666654 2221 1222334568899999999887777789999999862 111 111222 11122
Q ss_pred eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEe-CCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 322 FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNW-CPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 322 ~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
.+..++++++|+++++. ++.|.+|+.. ++. ...+..+.. +++++| .|++ +.|+.++.++ +.-++..++++.+
T Consensus 219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~-~~~~~~~~~-~~~~~f~~~d~-~~L~v~t~~~-l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE-LGRVLTPQT-TSNLCFGGPEG-RTLYMTVSTE-FWSIETNVRGLEH 291 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE-EEEEECSSC-CCEEEEESTTS-CEEEEEETTE-EEEEECSCCBCCC
T ss_pred CCCeEEECCCCCEEEEc--CCeEEEECCC-CCE-EEEEECCCC-ceeEEEECCCC-CEEEEEcCCe-EEEEEcccccccc
Confidence 34468999999977766 7789999986 333 345556666 999999 5787 7777777764 5556676666544
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=5.5e-14 Score=126.12 Aligned_cols=243 Identities=6% Similarity=-0.086 Sum_probs=164.4
Q ss_pred cEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390 110 AIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS 188 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 188 (512)
...+++++++++.++ +...++.|.+||..+.........+...+.++++.+++ +++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEeee
Confidence 788999999998777 54678899999976654433223333567889999987 6666655 88999999765432110
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccc
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS 268 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 268 (512)
.......+..+++.+++..+++ ...++.|.+|+..+......
T Consensus 103 ---------------------------~~~~~~~p~~i~~~~~g~l~v~-~~~~~~i~~~~~~~~~~~~~---------- 144 (270)
T 1rwi_B 103 ---------------------------PFDGLNYPEGLAVDTQGAVYVA-DRGNNRVVKLAAGSKTQTVL---------- 144 (270)
T ss_dssp ---------------------------CCCSCSSEEEEEECTTCCEEEE-EGGGTEEEEECTTCCSCEEC----------
T ss_pred ---------------------------ecCCcCCCcceEECCCCCEEEE-ECCCCEEEEEECCCceeEee----------
Confidence 0011246789999999885554 44578899997655433221
Q ss_pred cccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390 269 AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~ 348 (512)
.......+..++++++|+++++...++.|.+||..... ....... .......++++++|.++++...++.|.+|+
T Consensus 145 -~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~---~~~~~~~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 145 -PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN---QVVLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp -CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC---EEECCCS-SCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred -ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc---eEeeccc-CCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 11122357889999999977777778899999975422 1111111 113466799999998888877788999999
Q ss_pred cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
....... .....+...+.++++++++ .++++...++.|+++++...+..
T Consensus 220 ~~~~~~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 220 AGSTTST-VLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp TTCSCCE-ECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGGGSC
T ss_pred CCCCcce-eeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCCcccc
Confidence 8664331 1222333578999999999 78899999999999999876643
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=3.5e-14 Score=145.70 Aligned_cols=246 Identities=8% Similarity=0.009 Sum_probs=158.5
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCC-----cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDG-----YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
|...+.+++| ||||++||.+..++ .|++||+.+++. ..... ....+..++|+|||+.|
T Consensus 123 ~~~~~~~~~~---SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~-------------~~~~~-~~~~~~~~~wspDg~~l 185 (710)
T 2xdw_A 123 GTVALRGYAF---SEDGEYFAYGLSASGSDWVTIKFMKVDGAKE-------------LPDVL-ERVKFSCMAWTHDGKGM 185 (710)
T ss_dssp SCEEEEEEEE---CTTSSEEEEEEEETTCSCEEEEEEETTTTEE-------------EEEEE-EEECSCCEEECTTSSEE
T ss_pred CCEEEEEEEE---CCCCCEEEEEEcCCCCceEEEEEEECCCCCC-------------Ccccc-cCcccceEEEEeCCCEE
Confidence 3334455555 99999999875543 899999987643 11111 11225679999999999
Q ss_pred EEEeCCCc----------------EEEEeCCCCee----eecccCcCCCEEEEEeeCCCCCeEEEEeC-----CCcEEEE
Q 010390 124 LTASGDQT----------------IKIWDAEKKKC----TGALMGHTGSIKSLCSHPTNSDILVSGSR-----DGSFAIW 178 (512)
Q Consensus 124 ~s~~~dg~----------------i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~vw 178 (512)
+.++.++. |++|++.+++. +.....|...+..+.|+|++ ++|+.++. +..|.+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~ 264 (710)
T 2xdw_A 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYC 264 (710)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEE
T ss_pred EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEE
Confidence 98888766 99999988752 22333355668899999999 66665553 5689999
Q ss_pred eCCC------CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC---CeEEEEe
Q 010390 179 DLRC------KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN---SIVKFWD 249 (512)
Q Consensus 179 d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d---g~i~iwd 249 (512)
|+.+ +... ...+..+...+.. .|++++..+++.+..+ +.|.+||
T Consensus 265 d~~~~~~~~~~~~~--------------------------~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 265 DLQQESNGITGILK--------------------------WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp EGGGSSSSSCSSCC--------------------------CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred ECcccccccCCccc--------------------------eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence 9875 2110 0111222233333 4788999888766433 3799999
Q ss_pred ccCccce-ecccCCCccccccccccc--cCeeEEEeCCCCCEEEEEecCCe--EEEEEcccCCCCceEeeeeceeceeEE
Q 010390 250 TRNLKAQ-ITQAWPHAESSSAKETRL--HGISSLSQDSNGVFLTASCMDHR--IYLYNVLQLDKGPIQHFSGCRIESFYV 324 (512)
Q Consensus 250 ~~~~~~~-~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~ 324 (512)
+.++... .. .+..+. ..+..+.|++++.++++...++. |.+||+.++ .....+..+ ...+.
T Consensus 318 ~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--~~~~~l~~~--~~~v~ 383 (710)
T 2xdw_A 318 FTDPEESKWK----------VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--ALLKIFPLE--VGSVV 383 (710)
T ss_dssp TTSCCGGGCE----------EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--CEEEEECCC--SSEEE
T ss_pred CCCCCcccce----------eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--CEEEecCCC--CceEE
Confidence 9876421 11 112221 24778889888888888888885 555665332 233334333 34566
Q ss_pred EEEECCCCCEEEEe----cCCCCEEEEecCCCC
Q 010390 325 KSEICPNASHILSG----SSDGNAYVWQVNKPQ 353 (512)
Q Consensus 325 ~~~~s~~~~~l~~g----~~dg~i~iw~~~~~~ 353 (512)
.++++|+++.++.. ...+.|++||+.+++
T Consensus 384 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 384 GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 78899998766532 235789999998765
No 187
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.65 E-value=3.2e-13 Score=126.24 Aligned_cols=283 Identities=8% Similarity=-0.071 Sum_probs=178.3
Q ss_pred cCCCcEEEEeeC--CC---cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe---------
Q 010390 62 SKNSHIFAVSDE--DG---YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS--------- 127 (512)
Q Consensus 62 s~~~~~latg~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~--------- 127 (512)
+|+++++.+... .+ .|.+||..+++. +.++.....+ .++++||+++|+.+.
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~-------------~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg 93 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSI-------------LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeE-------------EEEecCCCCC--CeEECCCCCEEEEEeccccccccC
Confidence 578887777653 33 789999887643 3334333334 899999999999875
Q ss_pred -CCCcEEEEeCCCCeeeecccCc-------CCCEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCC-ccccceee
Q 010390 128 -GDQTIKIWDAEKKKCTGALMGH-------TGSIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKS-NCAESFVF 196 (512)
Q Consensus 128 -~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~ 196 (512)
.++.|.+||..+.+.+..+... ......+.|+|++ ++|+.+.. ++.|.++| .+++.... ..
T Consensus 94 ~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~~i~------ 165 (373)
T 2mad_H 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQLLS------ 165 (373)
T ss_pred CCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeEEcC------
Confidence 3678999999988877665422 1234578999999 66666653 57899999 87654321 10
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
. -.++.+.+++...+++.+.||.+.++|. +++......... .. ....+
T Consensus 166 ----------------------~---~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~-----~~-~~~~p 213 (373)
T 2mad_H 166 ----------------------S---PTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA-----ML-TAAQN 213 (373)
T ss_pred ----------------------C---CceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc-----cc-cCCcc
Confidence 0 0124556776655555557999999999 665542210000 00 00111
Q ss_pred -eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece--------eceeEEEEEECCCCCEEEEecC-------
Q 010390 277 -ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR--------IESFYVKSEICPNASHILSGSS------- 340 (512)
Q Consensus 277 -i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~g~~------- 340 (512)
.....+.+++..++..+.++.+.+.|+..........+.-.. .......++++++++.++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 122445555555554457889999998643222222111000 0111223678999888876543
Q ss_pred ---CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCCCccccc
Q 010390 341 ---DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 341 ---dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~ 401 (512)
++.|.++|+.+.+.. ..+. -.....+++|+||+..+++++. .++.|.+||+.+++.+..
T Consensus 294 ~~~~~~V~VID~~t~~vv-~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 294 HAAAKEVTSVTGLVGQTS-SQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCCCeEEEEECCCCEEE-EEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 357999999887653 3332 2336899999999932777776 589999999999987765
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=3.1e-13 Score=125.30 Aligned_cols=249 Identities=11% Similarity=0.048 Sum_probs=161.3
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.....+.++...+.+++| +++|++++++..++.|.+||.+++.. ......+...+.+++|++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~---~~~g~l~~~~~~~~~i~~~d~~~~~~-------------~~~~~~~~~~~~~i~~~~dg 98 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNF---DRQGQLFLLDVFEGNIFKINPETKEI-------------KRPFVSHKANPAAIKIHKDG 98 (333)
T ss_dssp EEEEEEESSCCCEEEEEE---CTTSCEEEEETTTCEEEEECTTTCCE-------------EEEEECSSSSEEEEEECTTS
T ss_pred ceeEEEeccCccccCcEE---CCCCCEEEEECCCCEEEEEeCCCCcE-------------EEEeeCCCCCcceEEECCCC
Confidence 334445566667788888 89999888888899999999876532 11112456789999999999
Q ss_pred CEEEEEeCC----CcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeC------CCcEEEEeCCCCCCCCC
Q 010390 121 TNILTASGD----QTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSR------DGSFAIWDLRCKSSPKS 188 (512)
Q Consensus 121 ~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~ 188 (512)
+++++...+ +.|.+||..+++....+. .+...+.+++++|++ .++++... .+.|..+|..+++..
T Consensus 99 ~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-- 175 (333)
T 2dg1_A 99 RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-- 175 (333)
T ss_dssp CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE--
T ss_pred cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE--
Confidence 888877666 689999998876543332 244579999999987 66666553 245555554432210
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCcccc
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESS 267 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~ 267 (512)
.+......+..++|+|+++.++++...++.|.+||+.+ +........ .. .
T Consensus 176 --------------------------~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~-~~--~ 226 (333)
T 2dg1_A 176 --------------------------PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA-TI--P 226 (333)
T ss_dssp --------------------------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE-EE--E
T ss_pred --------------------------EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc-eE--E
Confidence 01111235788999999998877666688999999864 222111000 00 0
Q ss_pred ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeecee----ceeEEEEEECCCCCEEEEecCC
Q 010390 268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI----ESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~g~~d 341 (512)
.....+ ..+..++++++|+++++...++.|.+||.. ...+..+..... ...+..++|+++++.|+.++.+
T Consensus 227 ~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~---g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 227 YYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR---GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT---SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC---CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 001111 356789999999988887788999999973 223333332211 0145678999998777655554
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=7.5e-14 Score=125.19 Aligned_cols=242 Identities=8% Similarity=-0.035 Sum_probs=161.6
Q ss_pred CcceEEEEEecCCCcEEE-EeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 52 PPLAVSFCKTSKNSHIFA-VSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~la-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
.+.+|++ +++|++++ +...++.|.+||..+... ......+...+.++++.++++.+++.. ++
T Consensus 25 ~p~~i~~---~~~g~l~v~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~ 87 (270)
T 1rwi_B 25 SPSGVAV---DSAGNVYVTSEGMYGRVVKLATGSTGT-------------TVLPFNGLYQPQGLAVDGAGTVYVTDF-NN 87 (270)
T ss_dssp CEEEEEE---CTTCCEEEEECSSSCEEEEECC------------------EECCCCSCCSCCCEEECTTCCEEEEET-TT
T ss_pred CccceEE---CCCCCEEEEccCCCCcEEEecCCCccc-------------ceEeeCCcCCcceeEECCCCCEEEEcC-CC
Confidence 5667877 99999777 547788999998755421 111123335678899999998666555 88
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS 210 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (512)
.|.+||................+.++++.+++ +++++...++.|.+|+..+.....
T Consensus 88 ~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~----------------------- 143 (270)
T 1rwi_B 88 RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTV----------------------- 143 (270)
T ss_dssp EEEEECTTCSCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEE-----------------------
T ss_pred EEEEEeCCCceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEe-----------------------
Confidence 99999987654432222233578999999987 777777778899999754322110
Q ss_pred ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEE
Q 010390 211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290 (512)
Q Consensus 211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (512)
........+.++++++++..+++ ...++.|.+||......... .......+..++++++|.+++
T Consensus 144 ----~~~~~~~~p~~i~~~~~g~l~v~-~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~p~~i~~d~~g~l~v 207 (270)
T 1rwi_B 144 ----LPFTGLNDPDGVAVDNSGNVYVT-DTDNNRVVKLEAESNNQVVL-----------PFTDITAPWGIAVDEAGTVYV 207 (270)
T ss_dssp ----CCCCSCCSCCCEEECTTCCEEEE-EGGGTEEEEECTTTCCEEEC-----------CCSSCCSEEEEEECTTCCEEE
T ss_pred ----eccccCCCceeEEEeCCCCEEEE-ECCCCEEEEEecCCCceEee-----------cccCCCCceEEEECCCCCEEE
Confidence 00111235678999999884444 54578999999886554321 111124578999999997777
Q ss_pred EEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 291 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
+...++.|.+||...... ..... .....+..++++++|+++++...++.|+++++...+.
T Consensus 208 ~~~~~~~v~~~~~~~~~~---~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 208 TEHNTNQVVKLLAGSTTS---TVLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EETTTSCEEEECTTCSCC---EECCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EECCCCcEEEEcCCCCcc---eeecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 777788999999754221 11111 1113467799999999888888899999999876543
No 190
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=2.4e-13 Score=133.52 Aligned_cols=289 Identities=7% Similarity=0.029 Sum_probs=185.7
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC--C
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAE--K 139 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~--~ 139 (512)
.|.+.++++...++.|.++|..+++. +.++. ....+..+.|+||++++++++.|+.|.+||+. +
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v-------------~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t 229 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEI-------------KTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE 229 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCE-------------EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeE-------------EEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence 34455777778899999999987643 33333 23467799999999999999999999999996 7
Q ss_pred CeeeecccCcCCCEEEEEee----CCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390 140 KKCTGALMGHTGSIKSLCSH----PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR 215 (512)
Q Consensus 140 ~~~~~~~~~h~~~v~~l~~~----~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (512)
++.+..+.... ....++|+ |++...+++...++.|.++|..+.+.......... ....
T Consensus 230 ~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~-----------------~~~~ 291 (567)
T 1qks_A 230 PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM-----------------TYDE 291 (567)
T ss_dssp CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE-----------------CTTT
T ss_pred CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccc-----------------cccc
Confidence 78777776533 46789999 68844455555669999999876554332111000 0000
Q ss_pred cccc-cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-
Q 010390 216 RKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC- 293 (512)
Q Consensus 216 ~~~~-~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 293 (512)
...| ...+..+..++++..+++.-..+|.|.++|....+..... ..........+.|+|++++++++.
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~----------~i~~~~~~~d~~~~pdgr~~~va~~ 361 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT----------EISAERFLHDGGLDGSHRYFITAAN 361 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE----------EEECCSSEEEEEECTTSCEEEEEEG
T ss_pred ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee----------eeeccccccCceECCCCCEEEEEeC
Confidence 0011 1257788888888877777767899999998765432211 111223466789999999987766
Q ss_pred cCCeEEEEEcccCCCCceEeeee---ceeceeEEEEEECCCCCEE-EEec-CCCCEEEEecCCCC------CCCceeccc
Q 010390 294 MDHRIYLYNVLQLDKGPIQHFSG---CRIESFYVKSEICPNASHI-LSGS-SDGNAYVWQVNKPQ------ADPIKLKSH 362 (512)
Q Consensus 294 ~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l-~~g~-~dg~i~iw~~~~~~------~~~~~~~~h 362 (512)
.++.|.++|+.+.+. ...+.- ..+...-.. -++|++..+ +++. .++.|.++|....+ ..+..+...
T Consensus 362 ~sn~V~ViD~~t~kl--~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 362 ARNKLVVIDTKEGKL--VAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp GGTEEEEEETTTTEE--EEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred CCCeEEEEECCCCcE--EEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence 578999999876432 222221 111100111 257875544 4443 46889999998732 112333333
Q ss_pred cCCeEEEEeCCCCCCeEEEEeC-------CCcEEEEeCCCC
Q 010390 363 DGEVTAVNWCPNEAGKIVTSSD-------DYTVRLWSLENS 396 (512)
Q Consensus 363 ~~~v~~v~~~~~~~~~l~s~~~-------dg~i~vwd~~~~ 396 (512)
...-..+..+|++ .+|..... .+.|.++|+.+.
T Consensus 439 g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 439 GGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcc
Confidence 3333457789999 56665442 359999999876
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=2.8e-12 Score=116.74 Aligned_cols=281 Identities=9% Similarity=0.012 Sum_probs=185.2
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
....+.+|.+ .++|+++++...++.|.+||.. +... ...+..+...+.++++.+++...++...
T Consensus 18 ~~~~p~~i~~---d~~g~l~v~~~~~~~v~~~~~~-~~~~------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 81 (300)
T 2qc5_A 18 PDSGPYGITS---SEDGKVWFTQHKANKISSLDQS-GRIK------------EFEVPTPDAKVMCLIVSSLGDIWFTENG 81 (300)
T ss_dssp TTCCEEEEEE---CTTSCEEEEETTTTEEEEECTT-SCEE------------EEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred CCCCcceeeE---CCCCCEEEEcCCCCeEEEECCC-CceE------------EEECCCCCCcceeEEECCCCCEEEEecC
Confidence 3456778888 9999988887778999999976 3210 1112234467999999999987777766
Q ss_pred CCcEEEEeCCCCeeee-cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 129 DQTIKIWDAEKKKCTG-ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
++.|..||.. ++... .+......+.++++.+++ .++++...++.|..+|.. ++... .
T Consensus 82 ~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~-~------------------ 139 (300)
T 2qc5_A 82 ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYE-Y------------------ 139 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEE-E------------------
T ss_pred CCeEEEECCC-CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEE-c------------------
Confidence 7889999987 54432 222234678999999877 777777667889999876 32110 0
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
........+.++++.+++..+++ ...++.|..+|. +++... . ........+..+++++++.
T Consensus 140 -------~~~~~~~~~~~i~~d~~g~l~v~-~~~~~~i~~~~~-~g~~~~-~---------~~~~~~~~~~~i~~d~~g~ 200 (300)
T 2qc5_A 140 -------DLPNKGSYPAFITLGSDNALWFT-ENQNNSIGRITN-TGKLEE-Y---------PLPTNAAAPVGITSGNDGA 200 (300)
T ss_dssp -------ECSSTTCCEEEEEECTTSSEEEE-ETTTTEEEEECT-TCCEEE-E---------ECSSTTCCEEEEEECTTSS
T ss_pred -------cCCCCCCCceeEEECCCCCEEEE-ecCCCeEEEECC-CCcEEE-e---------eCCCCCCCcceEEECCCCC
Confidence 01112346789999999985444 445788999998 433322 1 1112234578999999998
Q ss_pred EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeE
Q 010390 288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVT 367 (512)
Q Consensus 288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 367 (512)
+.++....+.|.+||. .. ....+........+..++++++|++.++...++.|..|+.. +......+......+.
T Consensus 201 l~v~~~~~~~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 275 (300)
T 2qc5_A 201 LWFVEIMGNKIGRITT-TG---EISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPH 275 (300)
T ss_dssp EEEEETTTTEEEEECT-TC---CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCC
T ss_pred EEEEccCCCEEEEEcC-CC---cEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccc
Confidence 7777667788999997 21 12222111122346779999999977777667889999983 3321112222345688
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 368 AVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
++++.+++ .++++.. . .|..+|.+
T Consensus 276 ~i~~~~~g-~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 276 GITFGKDG-SVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CEEECTTS-CEEEECS-S-EEEEEEEC
T ss_pred eeEeCCCC-CEEEEcc-C-ceEEeCCC
Confidence 99999998 6665554 4 67666653
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=1.5e-14 Score=147.90 Aligned_cols=248 Identities=8% Similarity=-0.089 Sum_probs=155.3
Q ss_pred CccCCcceEEEEEecCCCcEEEE-----eeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAV-----SDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~lat-----g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
+|...+.+++| ||||++||. |+.+..|++||+.+++... ...+... ....++|+|||+.
T Consensus 118 ~~~~~~~~~~~---SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----------~~~~~~~--~~~~~~wspDg~~ 181 (695)
T 2bkl_A 118 DGTVSLGTWAV---SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----------VDVIEGG--KYATPKWTPDSKG 181 (695)
T ss_dssp SSCEEEEEEEE---CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----------SCCBSCC--TTCCCEECTTSSE
T ss_pred CCCEEEEEEEE---CCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----------CcccCcc--cccceEEecCCCE
Confidence 45545556666 999999994 4455789999998875310 0011111 1157899999999
Q ss_pred EEEEeCCCc-------------EEEEeCCCCe----eeecccCcCCCEEEEEeeCCCCCeEEEEeCCC----cEEEEeCC
Q 010390 123 ILTASGDQT-------------IKIWDAEKKK----CTGALMGHTGSIKSLCSHPTNSDILVSGSRDG----SFAIWDLR 181 (512)
Q Consensus 123 l~s~~~dg~-------------i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~ 181 (512)
|+.++.|.. |++|++.+++ ++.....|...+.++.|+|++ ++|+.++.++ .|.+|+..
T Consensus 182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTT
T ss_pred EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCC
Confidence 999988776 9999998875 333444566688999999999 6666555544 56666543
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee---cCCeEEEEeccCccce-e
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA---VNSIVKFWDTRNLKAQ-I 257 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~---~dg~i~iwd~~~~~~~-~ 257 (512)
++.. ..+..+...+....+ +++. +++.+. .++.|.+||+.++... .
T Consensus 261 ~~~~----------------------------~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 261 EKDF----------------------------RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp CSSC----------------------------EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred CCce----------------------------EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 2211 112222334455555 6676 655443 2588999999876421 0
Q ss_pred cccCCCcccccccccc-ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390 258 TQAWPHAESSSAKETR-LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL 336 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 336 (512)
.. ....+ ...+..++++ ++.++++...|+..++|.+.. .......+... ....+..++++|+++.++
T Consensus 311 ~~---------l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 311 KE---------IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL-KGKPVRTVQLP-GVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp EE---------EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET-TCCEEEECCCS-SSSEECCCBSCTTCSEEE
T ss_pred eE---------EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-CCCeeEEecCC-CCeEEEEeecCCCCCEEE
Confidence 10 11111 3347778888 677888888999888887642 12222222221 123355578889988776
Q ss_pred ----EecCCCCEEEEecCCCCC
Q 010390 337 ----SGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 337 ----~g~~dg~i~iw~~~~~~~ 354 (512)
+....+.|++||+.+++.
T Consensus 379 ~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 379 YVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEETTEEEEEEEEETTTCCE
T ss_pred EEEcCCCCCCEEEEEECCCCcE
Confidence 333457899999987653
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=9.4e-14 Score=129.58 Aligned_cols=223 Identities=12% Similarity=0.100 Sum_probs=143.3
Q ss_pred CcceEEEEEecCCCcEEEEeeCC---C--cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDED---G--YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~ 126 (512)
.+.+++| ||||++||.++.+ + .|.+||+.+++. ..+..+.. +..++|+||++.|+.+
T Consensus 60 ~~~~~~~---SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~--------------~~l~~~~~-~~~~~wspdg~~l~~~ 121 (347)
T 2gop_A 60 NATMPRI---SPDGKKIAFMRANEEKKVSEIWVADLETLSS--------------KKILEAKN-IRSLEWNEDSRKLLIV 121 (347)
T ss_dssp SCEEEEE---CTTSSEEEEEEEETTTTEEEEEEEETTTTEE--------------EEEEEESE-EEEEEECTTSSEEEEE
T ss_pred cCCCeEE---CCCCCEEEEEEeccCCCcceEEEEECCCCce--------------EEEEcCCC-ccceeECCCCCEEEEE
Confidence 3455555 9999999987644 3 377788766532 12222334 9999999999999977
Q ss_pred eCC---------------------------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC------
Q 010390 127 SGD---------------------------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG------ 173 (512)
Q Consensus 127 ~~d---------------------------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg------ 173 (512)
+.+ ..|.+||+.+++.+..+.. . .+..+.|+|++ +++++..++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~ 197 (347)
T 2gop_A 122 GFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYF 197 (347)
T ss_dssp EECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSS
T ss_pred EccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEeccccccccc
Confidence 632 5799999998877445544 3 78899999987 666665542
Q ss_pred -cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-------CeE
Q 010390 174 -SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-------SIV 245 (512)
Q Consensus 174 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-------g~i 245 (512)
...+|.+.+++. . .+..+ ..+..+ +|+|+.+++.+..+ ..|
T Consensus 198 ~~~~l~~~d~~~~-~---------------------------~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l 246 (347)
T 2gop_A 198 KFWDIYIWEDGKE-E---------------------------KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL 246 (347)
T ss_dssp CCEEEEEEETTEE-E---------------------------EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred ccccEEEeCCCce-E---------------------------EeccC-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence 345554432110 0 11112 234444 89999888766332 478
Q ss_pred EEEeccCccceecccCCCccccccccccccCeeE-EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEE
Q 010390 246 KFWDTRNLKAQITQAWPHAESSSAKETRLHGISS-LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYV 324 (512)
Q Consensus 246 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 324 (512)
.+|| +++... ....+...+.. +.|+ ++ ++++++.++.+++| +.+ ... ..+... ...+.
T Consensus 247 ~~~d--~~~~~~-----------l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~--g~~-~~~~~~--~~~v~ 305 (347)
T 2gop_A 247 YIYD--GKEVMG-----------ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD--GEI-KPIAKG--RHWIM 305 (347)
T ss_dssp EEEC--SSCEEE-----------SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES--SSE-EEEECS--SSEEE
T ss_pred EEEC--CCceEe-----------ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC--Cce-EEEecC--CCeEE
Confidence 8888 333221 12233455775 8999 88 88899999999999 862 222 222222 34577
Q ss_pred EEEECCCCCEEEEecCCCCE-EEEecC
Q 010390 325 KSEICPNASHILSGSSDGNA-YVWQVN 350 (512)
Q Consensus 325 ~~~~s~~~~~l~~g~~dg~i-~iw~~~ 350 (512)
.++|+| .++++++.++.. .||.++
T Consensus 306 ~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 306 GFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEESS--SEEEEEECSSSCCEEEEES
T ss_pred eeeeeC--cEEEEEcCCCChHHheEeC
Confidence 789999 677777766654 777765
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=1.8e-13 Score=124.51 Aligned_cols=238 Identities=8% Similarity=0.008 Sum_probs=159.1
Q ss_pred ccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 49 EETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
+.....++.| +|+|+ +++++..++.|.+||..++ ...+..+...+.+++++++++++++..
T Consensus 26 ~~~~~eg~~~---d~~g~~l~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~l~~~~dg~l~v~~~ 87 (296)
T 3e5z_A 26 GFTWTEGPVY---VPARSAVIFSDVRQNRTWAWSDDGQ---------------LSPEMHPSHHQNGHCLNKQGHLIACSH 87 (296)
T ss_dssp CCSSEEEEEE---EGGGTEEEEEEGGGTEEEEEETTSC---------------EEEEESSCSSEEEEEECTTCCEEEEET
T ss_pred CCccccCCeE---eCCCCEEEEEeCCCCEEEEEECCCC---------------eEEEECCCCCcceeeECCCCcEEEEec
Confidence 4455678888 99998 8888888999999998754 233445667899999999999888777
Q ss_pred CCCcEEEEeCCCCeeeecccCc----CCCEEEEEeeCCCCCeEEEEeC-----------------CCcEEEEeCCCCCCC
Q 010390 128 GDQTIKIWDAEKKKCTGALMGH----TGSIKSLCSHPTNSDILVSGSR-----------------DGSFAIWDLRCKSSP 186 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~ 186 (512)
.++.|.+||..+++........ ...++.+++.|++ +++++.+. .+.|..++.. +..
T Consensus 88 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~- 164 (296)
T 3e5z_A 88 GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL- 164 (296)
T ss_dssp TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-
T ss_pred CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCE-
Confidence 7789999999888754332211 2346789999988 77776321 2344444433 110
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc-Cccc-eecccCCCc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR-NLKA-QITQAWPHA 264 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~-~~~~-~~~~~~~~~ 264 (512)
.....+......++|+|+++.+ ++...++.|.+||+. ++.. ....
T Consensus 165 ---------------------------~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~----- 211 (296)
T 3e5z_A 165 ---------------------------SAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGV----- 211 (296)
T ss_dssp ---------------------------EEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEE-----
T ss_pred ---------------------------EEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCe-----
Confidence 0112233457889999999998 667678999999987 3332 1110
Q ss_pred cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE-CCCCCEEEEecCCCC
Q 010390 265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI-CPNASHILSGSSDGN 343 (512)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~ 343 (512)
........+..++++++|+++++. ++.|.+||.. ...+..+.... . +.+++| +++++.|++++.++
T Consensus 212 ----~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~---g~~~~~~~~~~--~-~~~~~f~~~d~~~L~v~t~~~- 278 (296)
T 3e5z_A 212 ----HFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD---GDELGRVLTPQ--T-TSNLCFGGPEGRTLYMTVSTE- 278 (296)
T ss_dssp ----EECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT---SCEEEEEECSS--C-CCEEEEESTTSCEEEEEETTE-
T ss_pred ----EeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC---CCEEEEEECCC--C-ceeEEEECCCCCEEEEEcCCe-
Confidence 011123456789999999866655 8899999974 22333333322 2 566888 68999888888764
Q ss_pred EEEEecCCCC
Q 010390 344 AYVWQVNKPQ 353 (512)
Q Consensus 344 i~iw~~~~~~ 353 (512)
+.-++..+..
T Consensus 279 l~~~~~~~~~ 288 (296)
T 3e5z_A 279 FWSIETNVRG 288 (296)
T ss_dssp EEEEECSCCB
T ss_pred EEEEEccccc
Confidence 5555555443
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=1.7e-13 Score=126.10 Aligned_cols=284 Identities=11% Similarity=-0.017 Sum_probs=178.9
Q ss_pred cCCCcEEEEeeC-----CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe---------
Q 010390 62 SKNSHIFAVSDE-----DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS--------- 127 (512)
Q Consensus 62 s~~~~~latg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~--------- 127 (512)
.|+++.+.+... ++.|.++|..+.+. +.++..-..+ . ++++|||++|+.+.
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G 105 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARG 105 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccC
Confidence 799998888765 67999999987643 4444444444 4 99999999988765
Q ss_pred -CCCcEEEEeCCCCeeeecccCcC-------CCEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeee
Q 010390 128 -GDQTIKIWDAEKKKCTGALMGHT-------GSIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 128 -~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
.++.|.+||..+++.+..+.-.. .....+.|+|++ ++++.+.. ++.|.++|+.+.+.......
T Consensus 106 ~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv~tI~v------ 178 (386)
T 3sjl_D 106 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDV------ 178 (386)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEEC------
T ss_pred CCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEEEEEEC------
Confidence 36789999999999888774221 245568999999 66666543 68999999987654332110
Q ss_pred cccccccccccccccceecccccccEEEEEEeecC-CEEEEEeecCCeEEEEeccC-ccceecccCCCcccccccccccc
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE-VSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
. . +....|.+ ..+++ .+.||.+.+.++.. ++...... . .+.....
T Consensus 179 ----------------------~-g--~~~~~P~g~~~~~~-~~~DG~~~~v~~~~~g~v~~~~~-~------~~~~~~~ 225 (386)
T 3sjl_D 179 ----------------------P-D--CYHIFPTAPDTFFM-HCRDGSLAKVAFGTEGTPEITHT-E------VFHPEDE 225 (386)
T ss_dssp ----------------------C-S--EEEEEEEETTEEEE-EETTSCEEEEECCSSSCCEEEEC-C------CCSCTTS
T ss_pred ----------------------C-C--cceeecCCCceeEE-ECCCCCEEEEECCCCCeEEEeec-c------eeccccc
Confidence 0 0 11223433 34443 44688888888876 44321110 0 0111111
Q ss_pred Ce-eEEEe-CCCCCEEEEEecCCeEEEEEcccCCCCceEeee---------eceeceeEEEEEECCCCCEEEEecC----
Q 010390 276 GI-SSLSQ-DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS---------GCRIESFYVKSEICPNASHILSGSS---- 340 (512)
Q Consensus 276 ~i-~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~s~~~~~l~~g~~---- 340 (512)
.+ ....| .++|++++ .+.+|.|.+.|+............ +... .....++++++++.++....
T Consensus 226 ~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p-~g~q~~a~~~~~~~lyV~~~~~~~ 303 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP-GGWQQVAYHRALDRIYLLVDQRDE 303 (386)
T ss_dssp CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE-CSSSCEEEETTTTEEEEEEEECCT
T ss_pred cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC-CCcceeeECCCCCeEEEEeccccc
Confidence 12 12355 36776655 445899999998654322222221 0000 11123677899888876542
Q ss_pred ------CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEE-EeCCCcEEEEeCCCCcccccccC
Q 010390 341 ------DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT-SSDDYTVRLWSLENSRCSSMRSP 404 (512)
Q Consensus 341 ------dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~ 404 (512)
.+.|.++|+.+.+.......+ ..+.+|++++|+..+|++ ...++.|.++|..+++.+.....
T Consensus 304 ~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 304 WRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred cccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 246999999988764333333 368899999999435555 45689999999999998876543
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=3.6e-12 Score=116.98 Aligned_cols=247 Identities=9% Similarity=0.026 Sum_probs=162.0
Q ss_pred CCCcEEEEEEecCCCEEEE-------EeCCCcEEEEeCCCCeeeeccc----CcCCCEEEEEeeCC-CCCeEEEEeCCCc
Q 010390 107 HQNAIFDLCWIKEDTNILT-------ASGDQTIKIWDAEKKKCTGALM----GHTGSIKSLCSHPT-NSDILVSGSRDGS 174 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~-~~~~l~s~~~dg~ 174 (512)
.-....+++|++++..+++ +..++.|.+||..+++...... ++...+.++++.++ + +++++.. ++.
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~v~~~-~~~ 93 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADM-RLG 93 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEET-TTE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC-cEEEEEC-CCC
Confidence 3456688999999988887 6778999999988876543221 24567899999998 5 5555544 447
Q ss_pred EEEEeCCCCCCCCC-ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-----------
Q 010390 175 FAIWDLRCKSSPKS-NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN----------- 242 (512)
Q Consensus 175 i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d----------- 242 (512)
|.+||.. ++.... ... ........+.++++++++..+++.. .+
T Consensus 94 l~~~d~~-g~~~~~~~~~-----------------------~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKD-----------------------SEGRRMQGCNDCAFDYEGNLWITAP-AGEVAPADYTRSM 148 (314)
T ss_dssp EEEEETT-SCEEECCSBC-----------------------TTSCBCBCCCEEEECTTSCEEEEEC-BCBCTTSCCCBTT
T ss_pred EEEEeCC-CCEEEEEecc-----------------------CCCccccCCcCEEECCCCCEEEEec-Ccccccccccccc
Confidence 8899987 432110 000 0001123578999999998776643 33
Q ss_pred ----CeEEEEeccCccceecccCCCccccccccccccCeeEEEeC----CCCCEEEEE-ecCCeEEEEEccc-CCCCceE
Q 010390 243 ----SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD----SNGVFLTAS-CMDHRIYLYNVLQ-LDKGPIQ 312 (512)
Q Consensus 243 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~ 312 (512)
+.|..||.. ++... ..........++++ ++++.|+++ ..++.|.+||+.. .......
T Consensus 149 ~~~~~~l~~~~~~-g~~~~------------~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~ 215 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQMIQ------------VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK 215 (314)
T ss_dssp SSSCEEEEEECTT-SCEEE------------EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEECCC-CCEEE------------eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccce
Confidence 567777765 33211 11222346788999 999766655 4678999999752 1111111
Q ss_pred eeeecee-c-eeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCC-eEEEEeCCCcEE
Q 010390 313 HFSGCRI-E-SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVR 389 (512)
Q Consensus 313 ~~~~~~~-~-~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~ 389 (512)
.+..... . .....++++++|+++++...++.|.+||..+++. ...+..+...+.+++|++++ . ++++...++.|.
T Consensus 216 ~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 216 VWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQT-KTIFVTEHENNAVW 293 (314)
T ss_dssp EEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTS-SEEEEEETTTTEEE
T ss_pred EEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE-eEEEeCCCCCceeEEECCCC-CEEEEEeCCCCeEE
Confidence 1111111 1 3456789999999888877788899999875554 34555566789999999999 6 556666778999
Q ss_pred EEeCCC
Q 010390 390 LWSLEN 395 (512)
Q Consensus 390 vwd~~~ 395 (512)
.|++..
T Consensus 294 ~~~~~~ 299 (314)
T 1pjx_A 294 KFEWQR 299 (314)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 999875
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.4e-11 Score=111.99 Aligned_cols=244 Identities=9% Similarity=-0.049 Sum_probs=166.7
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA-LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS 184 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 184 (512)
.+...+.++++.++|..+++...++.|.+||.. ++.... +..+...+.++++.+++ .++++...++.|..||.. +.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC-Cc
Confidence 455789999999999877776668899999988 543322 22345679999999987 777777667889999875 21
Q ss_pred CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390 185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA 264 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 264 (512)
. ... ........+.++++.+++..+++ ...++.|..||. +++.....
T Consensus 89 ~-~~~-------------------------~~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~~~d~-~g~~~~~~----- 135 (299)
T 2z2n_A 89 I-KEY-------------------------TLPNPDSAPYGITEGPNGDIWFT-EMNGNRIGRITD-DGKIREYE----- 135 (299)
T ss_dssp E-EEE-------------------------ECSSTTCCEEEEEECTTSCEEEE-ETTTTEEEEECT-TCCEEEEE-----
T ss_pred E-EEE-------------------------eCCCcCCCceeeEECCCCCEEEE-ecCCceEEEECC-CCCEEEec-----
Confidence 0 000 00112346889999998876665 435789999998 44332111
Q ss_pred cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390 265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344 (512)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 344 (512)
.......+..+++++++.++++...++.|..||. +.. ...+........+..++++++++++++...++.|
T Consensus 136 -----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 206 (299)
T 2z2n_A 136 -----LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKI 206 (299)
T ss_dssp -----CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred -----CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccCCceE
Confidence 1112345889999999988777767789999997 322 2222111112346679999999987777778889
Q ss_pred EEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 345 YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 345 ~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
.+|+. ++.........+...+.++++++++ .++++...++.|..||. +++
T Consensus 207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 207 GRITT-SGEITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEET-TTE
T ss_pred EEECC-CCcEEEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECC-CCc
Confidence 99998 5443212223345679999999998 67777667889999998 444
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=9.6e-13 Score=117.69 Aligned_cols=220 Identities=10% Similarity=0.015 Sum_probs=154.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
.++.|++++.|+.|.+||.++++.+..+..+. ..+.++.+.|++ ++++ +.++.|..||. +++.+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~--------- 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWN--------- 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEE---------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEE---------
Confidence 46789999999999999999999999998765 478899999988 7777 34678999998 5543221
Q ss_pred cccccccccccccccceecccc-cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
+..+ ...+.++.+.++++.+++.+..++.|..+|. +++.+....... ....+...
T Consensus 71 ------------------~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~-----~~~~~~~~ 126 (276)
T 3no2_A 71 ------------------IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET-----GIERPHAQ 126 (276)
T ss_dssp ------------------EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC-----SCSSGGGS
T ss_pred ------------------EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC-----CCCccccc
Confidence 1111 2357788999999998875533677887876 455443322111 01112234
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
...+...++|+++++...++.|..||.. + +.+..+... .....+...++|+.++++..++.|..+|..+++..
T Consensus 127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G--~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~- 199 (276)
T 3no2_A 127 FRQINKNKKGNYLVPLFATSEVREIAPN-G--QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV- 199 (276)
T ss_dssp CSCCEECTTSCEEEEETTTTEEEEECTT-S--CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE-
T ss_pred ccCceECCCCCEEEEecCCCEEEEECCC-C--CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE-
Confidence 5566789999999999999999999975 3 333343332 12334677899999999988889999999877663
Q ss_pred ceecccc------CCeEEEEeCCCCCCeEEEEe
Q 010390 357 IKLKSHD------GEVTAVNWCPNEAGKIVTSS 383 (512)
Q Consensus 357 ~~~~~h~------~~v~~v~~~~~~~~~l~s~~ 383 (512)
..+..+. ..+..++..+++ .++++..
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~~G-~i~v~~~ 231 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQNG-GLYICNW 231 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECTTS-CEEEEEE
T ss_pred EEecCCCCCCccccccccceEcCCC-CEEEEec
Confidence 3343221 237888899998 7777763
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.56 E-value=4.3e-13 Score=138.14 Aligned_cols=285 Identities=12% Similarity=-0.014 Sum_probs=169.8
Q ss_pred cCCCcEEEEeeCCCc---EEEEECCC-----CCCcccccccccccccee----ccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390 62 SKNSHIFAVSDEDGY---VSLFDSRR-----KLPSFACHRENAEKARIS----DWVAHQNAIFDLCWIKEDTNILTASGD 129 (512)
Q Consensus 62 s~~~~~latg~~dg~---i~iwd~~~-----~~~~~~~~~~~~~~~~~~----~~~~h~~~V~~l~~s~~~~~l~s~~~d 129 (512)
+|+|++++....++. -.||.... +.. ..+. .-.+|...+..++|||||++|+.+..+
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~ 183 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKG-----------RVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQD 183 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCC-----------EEEECGGGCC----EEEEEEEECTTSSEEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCC-----------EEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcC
Confidence 589998887654433 55565432 211 1111 112344578899999999999976543
Q ss_pred -----CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc--------------EEEEeCCCCCCCCCcc
Q 010390 130 -----QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS--------------FAIWDLRCKSSPKSNC 190 (512)
Q Consensus 130 -----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--------------i~vwd~~~~~~~~~~~ 190 (512)
..|++||+.+++.+.... +...+..++|+|+ +.|+.++.|+. |++|++.++.....
T Consensus 184 ~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD--~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-- 258 (741)
T 1yr2_A 184 GGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN--DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ-- 258 (741)
T ss_dssp TTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT--SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE--
T ss_pred CCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC--CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE--
Confidence 469999999998754311 2222357889998 45555555443 88888765431100
Q ss_pred ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec----CCeEEEEeccCccce-ecccCCCcc
Q 010390 191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV----NSIVKFWDTRNLKAQ-ITQAWPHAE 265 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~----dg~i~iwd~~~~~~~-~~~~~~~~~ 265 (512)
.+.....+...+..+.|+|+|+.++++... ...|++||+.++... ..
T Consensus 259 ---------------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~------- 310 (741)
T 1yr2_A 259 ---------------------PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT------- 310 (741)
T ss_dssp ---------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-------
T ss_pred ---------------------EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-------
Confidence 000111222357899999999998886642 348999999876211 11
Q ss_pred ccccccccccCeeEEEeCCCCCEEEEEec----CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390 266 SSSAKETRLHGISSLSQDSNGVFLTASCM----DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 341 (512)
.+..+...+... ++++|..|+..+. ++.|.+||+.... .....+..+. ...+..++++ ++.++++...|
T Consensus 311 ---~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~d 383 (741)
T 1yr2_A 311 ---ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPES-KDNLESVGIA-GNRLFASYIHD 383 (741)
T ss_dssp ---EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCC-SSEEEEEEEE-BTEEEEEEEET
T ss_pred ---EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCC-CCeEEEEEEE-CCEEEEEEEEC
Confidence 122222233333 3488888887765 3569999986532 2222222222 1234456666 56777888888
Q ss_pred CCEEEEecC-CCCCCCceecc-ccCCeEEEEeCCCCCCeEEEEe---CCCcEEEEeCCCCcc
Q 010390 342 GNAYVWQVN-KPQADPIKLKS-HDGEVTAVNWCPNEAGKIVTSS---DDYTVRLWSLENSRC 398 (512)
Q Consensus 342 g~i~iw~~~-~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~ 398 (512)
+..+||.+. ++.. ...+.. +.+.|..+.++|++..++++.+ ..+.|++||+.+++.
T Consensus 384 g~~~l~~~~~~g~~-~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 384 AKSQVLAFDLDGKP-AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEETTSCE-EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEeCCCCc-eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 887777655 2222 233333 3667899999999844444433 458999999988774
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=2.1e-12 Score=115.48 Aligned_cols=221 Identities=10% Similarity=-0.021 Sum_probs=152.7
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 010390 63 KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK 141 (512)
Q Consensus 63 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 141 (512)
..+++|++++.++.|.+||.++++. +.++..+. ..+.++.++|+|+.|+ +.++.|+.||. +++
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~-------------~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~ 66 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEI-------------VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR 66 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEE-------------EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeE-------------EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC
Confidence 3468999999999999999877743 55555554 4788999999999888 34778999998 899
Q ss_pred eeecccCcC-CCEEEEEeeCCCCCeEEEEeC-CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc
Q 010390 142 CTGALMGHT-GSIKSLCSHPTNSDILVSGSR-DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219 (512)
Q Consensus 142 ~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (512)
.+..+..+. ..+.++.+.+++ +++++.+. ++.|..+|. +++.+..... .. ....+
T Consensus 67 ~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~---------~~------------~~~~~ 123 (276)
T 3no2_A 67 ELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEF---------ET------------GIERP 123 (276)
T ss_dssp EEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEE---------CC------------SCSSG
T ss_pred EEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEec---------cC------------CCCcc
Confidence 888887653 478899999988 78888776 777777775 3332111100 00 00011
Q ss_pred cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 299 (512)
......+...+++..+++ ...++.|..||.. ++.......+ ..+.++...++++.++++..++.|.
T Consensus 124 ~~~~~~v~~~~~G~~lv~-~~~~~~v~~~d~~-G~~~w~~~~~------------~~~~~~~~~~~g~~~v~~~~~~~v~ 189 (276)
T 3no2_A 124 HAQFRQINKNKKGNYLVP-LFATSEVREIAPN-GQLLNSVKLS------------GTPFSSAFLDNGDCLVACGDAHCFV 189 (276)
T ss_dssp GGSCSCCEECTTSCEEEE-ETTTTEEEEECTT-SCEEEEEECS------------SCCCEEEECTTSCEEEECBTTSEEE
T ss_pred cccccCceECCCCCEEEE-ecCCCEEEEECCC-CCEEEEEECC------------CCccceeEcCCCCEEEEeCCCCeEE
Confidence 123445567889988876 4479999999998 7776643221 2456678889999999998888999
Q ss_pred EEEcccCCCCceEeeeecee----ceeEEEEEECCCCCEEEEe
Q 010390 300 LYNVLQLDKGPIQHFSGCRI----ESFYVKSEICPNASHILSG 338 (512)
Q Consensus 300 i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~g 338 (512)
.+|..++ ..+..+..... ...+..++..++|+.+++.
T Consensus 190 ~~d~~tG--~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 190 QLNLESN--RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EECTTTC--CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEeCcCC--cEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 9997643 33334432211 1235567777888777765
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=8.5e-12 Score=114.43 Aligned_cols=248 Identities=8% Similarity=0.045 Sum_probs=157.1
Q ss_pred CCcceEEEEEecCCCcEEEE-------eeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCE
Q 010390 51 TPPLAVSFCKTSKNSHIFAV-------SDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTN 122 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~lat-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~ 122 (512)
..+.+++| +++|.++++ +..++.|.+||..++..... ......++...+.+++++++ +++
T Consensus 18 ~~~~~~~~---~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---------~~~~~~~~~~~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 18 PGAEGPVF---DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---------CKPEVNGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp TTCEEEEE---CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE---------ECCEETTEECCEEEEEECSSSSEE
T ss_pred CCccCceE---CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE---------EecccCCCCCCCceEEEecCCCcE
Confidence 34678888 899998888 67788999999766532100 00001124567999999998 654
Q ss_pred EEEEeCCCcEEEEeCCCCeeeec-ccC----cCCCEEEEEeeCCCCCeEEEEeCC---------------CcEEEEeCCC
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGA-LMG----HTGSIKSLCSHPTNSDILVSGSRD---------------GSFAIWDLRC 182 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~~l~s~~~d---------------g~i~vwd~~~ 182 (512)
+++. ..+.|.+||.. ++.... ... ....+.++++.+++ +++++...+ +.|..||..
T Consensus 86 ~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 86 FVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred EEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 5444 44479999988 665433 221 12358899999987 777766554 456666543
Q ss_pred CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe----ecCCEEEEEeecCCeEEEEecc-Ccccee
Q 010390 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL----KDEVSIATASAVNSIVKFWDTR-NLKAQI 257 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~g~~dg~i~iwd~~-~~~~~~ 257 (512)
++.. ....+......++++ ++++.++++...++.|.+||.. ++....
T Consensus 162 g~~~----------------------------~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 162 GQMI----------------------------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp SCEE----------------------------EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred CCEE----------------------------EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence 2110 001122346788999 9998777766668899999986 332110
Q ss_pred cccCCCccccccccccc-cCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-
Q 010390 258 TQAWPHAESSSAKETRL-HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI- 335 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l- 335 (512)
..... ....+. ..+..++++++|+++++...++.|.+||..+... ...+... ...+.+++++++++.|
T Consensus 214 ~~~~~------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~--~~~~~~~--~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 214 KKVWG------HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--KMRIRCP--FEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp EEEEE------ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--SEEEECS--SSCEEEEEECTTSSEEE
T ss_pred ceEEE------ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE--eEEEeCC--CCCceeEEECCCCCEEE
Confidence 00000 111121 3467899999999888877889999999763322 2222222 2456789999999955
Q ss_pred EEecCCCCEEEEecCCC
Q 010390 336 LSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 336 ~~g~~dg~i~iw~~~~~ 352 (512)
++...++.|..|++...
T Consensus 284 v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 284 VTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEETTTTEEEEEECSSC
T ss_pred EEeCCCCeEEEEeCCCC
Confidence 45556678999998754
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.51 E-value=1.7e-12 Score=119.71 Aligned_cols=240 Identities=10% Similarity=0.022 Sum_probs=156.6
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 131 (512)
.+..+.+ . ++++.++...++.|.+||..+++. +.++. .......++++++++..++...++.
T Consensus 45 ~~~~i~~---~-~~~lyv~~~~~~~v~viD~~t~~~-------------~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~ 106 (328)
T 3dsm_A 45 VAQSMVI---R-DGIGWIVVNNSHVIFAIDINTFKE-------------VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYR 106 (328)
T ss_dssp CEEEEEE---E-TTEEEEEEGGGTEEEEEETTTCCE-------------EEEEE-CCSSEEEEEEEETTEEEEEEBSCSE
T ss_pred cceEEEE---E-CCEEEEEEcCCCEEEEEECcccEE-------------EEEcC-CCCCCcEEEEeCCCeEEEEECCCCe
Confidence 3456665 3 455666666789999999987643 33332 3467889999999854444448999
Q ss_pred EEEEeCCCCeeeecccCcC-----CCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 132 IKIWDAEKKKCTGALMGHT-----GSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
|.+||..+++....+.... .....+++ . +..++++.. .++.|.++|+.+++.....
T Consensus 107 v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i---------------- 168 (328)
T 3dsm_A 107 IFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDEL---------------- 168 (328)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEE----------------
T ss_pred EEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEE----------------
Confidence 9999999998876665332 14556777 3 424555544 4889999999876432211
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeec---------CCeEEEEeccCccceecccCCCccccccccccccC
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV---------NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
. .......+.++++++.++++... .+.|.++|..+++....... .....
T Consensus 169 -----------~-~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~----------~~g~~ 226 (328)
T 3dsm_A 169 -----------T-IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF----------KLGDW 226 (328)
T ss_dssp -----------E-CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC----------CTTCC
T ss_pred -----------E-cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec----------CCCCC
Confidence 0 11234678889999866654322 27899999988765433211 11135
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEEEe----cCCCCEEEEecCC
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHILSG----SSDGNAYVWQVNK 351 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g----~~dg~i~iw~~~~ 351 (512)
...++++|+++.|+++.. .|.+||..+........+... ......++++| ++.++++. ..++.|.+||..
T Consensus 227 p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~- 301 (328)
T 3dsm_A 227 PSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ- 301 (328)
T ss_dssp CEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-
T ss_pred ceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-
Confidence 789999999999988765 899999866443211111110 23456799999 45555665 567899999987
Q ss_pred CCC
Q 010390 352 PQA 354 (512)
Q Consensus 352 ~~~ 354 (512)
++.
T Consensus 302 g~~ 304 (328)
T 3dsm_A 302 GKL 304 (328)
T ss_dssp CCE
T ss_pred CCE
Confidence 543
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.49 E-value=1.7e-12 Score=121.85 Aligned_cols=285 Identities=8% Similarity=-0.025 Sum_probs=177.4
Q ss_pred cCCCcEEEEeeCC-----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe---------
Q 010390 62 SKNSHIFAVSDED-----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS--------- 127 (512)
Q Consensus 62 s~~~~~latg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~--------- 127 (512)
.++++.+++.... +.|.++|..+.+. +.++..-..+ .+.++||+++|+.+.
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~v-------------v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G 145 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRI-------------LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARG 145 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEE-------------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEE
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEE-------------EEEEECCCCC--ceEECCCCCEEEEEeccccccccC
Confidence 4677766666442 6999999987643 4444433445 899999999988775
Q ss_pred -CCCcEEEEeCCCCeeeecccCc-------CCCEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeee
Q 010390 128 -GDQTIKIWDAEKKKCTGALMGH-------TGSIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 128 -~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
.++.|.++|..+++.+..+.-. ......+.|+|++ ++++.+.. ++.|.+.|+.+.+.......
T Consensus 146 ~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv~~I~v------ 218 (426)
T 3c75_H 146 KRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFDRMLDV------ 218 (426)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEEC------
T ss_pred CCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEEEEEEc------
Confidence 3678999999999888776421 1234568899998 66666653 57899999987654321100
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC-
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG- 276 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (512)
. . +....|++...+++.+.||.+.+.+..+++...... . .......+
T Consensus 219 ----------------------~-g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~--~-----~~~v~~~p~ 266 (426)
T 3c75_H 219 ----------------------P-D--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT--E-----VFHTEDELL 266 (426)
T ss_dssp ----------------------C-S--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC--C-----CCSCTTSCB
T ss_pred ----------------------C-C--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee--e-----eeccCCCce
Confidence 0 0 123344443333334467777777774444332110 0 00000111
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee---ce-----eceeEEEEEECCCCCEEEEecC--------
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG---CR-----IESFYVKSEICPNASHILSGSS-------- 340 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~-----~~~~~~~~~~s~~~~~l~~g~~-------- 340 (512)
...+.+.+++..++.....+.+.+.|+..........+.- .. .......++++++++.+++...
T Consensus 267 ~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk 346 (426)
T 3c75_H 267 INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK 346 (426)
T ss_dssp CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Confidence 1235678888888777888999999985432111111100 00 0000112688999887766532
Q ss_pred --CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCCCcccccc
Q 010390 341 --DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 341 --dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~ 402 (512)
++.|.++|+.+.+.. ..+.. .....+++|+||+..++++.. .++.|.++|+.+++.+...
T Consensus 347 ~~s~~VsVID~~T~kvv-~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 347 AASRFVVVLNAETGERI-NKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp SCEEEEEEEETTTCCEE-EEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEECCCCeEE-EEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 357999999987763 33321 225889999999932777776 6999999999999987653
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=1.9e-10 Score=104.54 Aligned_cols=243 Identities=5% Similarity=-0.070 Sum_probs=164.8
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee-cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG-ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS 185 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 185 (512)
....+.++++.+++...++...++.|.+||.. ++... .+..+...+.++++.+++ .++++...++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCe
Confidence 45688999999999888877678999999987 55433 223334678999999887 777776667889999876 321
Q ss_pred CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390 186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 265 (512)
.. . ........+.++++.+++..+++ ...++.|..+|.. ++.....
T Consensus 95 ~~-~-------------------------~~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~~~~~~-g~~~~~~------ 140 (300)
T 2qc5_A 95 TE-Y-------------------------PLPQPDSGPYGITEGLNGDIWFT-QLNGDRIGKLTAD-GTIYEYD------ 140 (300)
T ss_dssp EE-E-------------------------ECSSTTCCEEEEEECSTTCEEEE-ETTTTEEEEECTT-SCEEEEE------
T ss_pred EE-e-------------------------cCCCCCCCCccceECCCCCEEEE-ccCCCeEEEECCC-CCEEEcc------
Confidence 10 0 00112246889999998876665 4347889999987 4332111
Q ss_pred ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEE
Q 010390 266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAY 345 (512)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 345 (512)
.......+..++++++++++++...++.|..+|. ... ...+........+..+++++++++.++....+.|.
T Consensus 141 ----~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 141 ----LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK---LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp ----CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred ----CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc---EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence 1112345789999999996666666789999997 321 12222111223467789999998887777777899
Q ss_pred EEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 346 VWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 346 iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+|+. ++.........+...+.++++.+++ .++++...++.|..||. +++
T Consensus 213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~ 261 (300)
T 2qc5_A 213 RITT-TGEISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITN-DNT 261 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT-TSC
T ss_pred EEcC-CCcEEEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECC-CCc
Confidence 9998 3332112223345678999999998 67777767789999998 444
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=1.1e-10 Score=108.98 Aligned_cols=259 Identities=11% Similarity=0.012 Sum_probs=157.8
Q ss_pred eEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390 55 AVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL 124 (512)
Q Consensus 55 ~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 124 (512)
.+.+ ||||++|+++. .++.|.+||..+.+......... . .... +...-..+.|+|||++|+
T Consensus 70 ~i~~---spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~----~-~~~~-~g~~p~~~~~spDG~~l~ 140 (373)
T 2mad_H 70 NPVA---AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD----A-PRFD-VGPYSWMNANTPNNADLL 140 (373)
T ss_pred CeEE---CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC----c-cccc-cCCCccceEECCCCCEEE
Confidence 8888 99999999885 36789999997654311100000 0 0000 112345899999999999
Q ss_pred EEeC--CCcEEEEeCCCCeeeec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 125 TASG--DQTIKIWDAEKKKCTGA-LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 125 s~~~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
.+.. ++.|.++| .+++.+.. +... . ++.+.|.+...+++.+.||.+.++|. +++........
T Consensus 141 v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~--------- 205 (373)
T 2mad_H 141 FFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG--------- 205 (373)
T ss_pred EEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc---------
Confidence 8874 57899999 99988877 6432 2 24566777678888889999999999 65432110000
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc-cccccccccCeeEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES-SSAKETRLHGISSL 280 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 280 (512)
. .............+.+++..++... .++.+.+.|+................ .............+
T Consensus 206 ----------~--~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 206 ----------A--MLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred ----------c--cccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence 0 0000011122345666666655544 57899999987553221110000000 00001112234457
Q ss_pred EeCCCCCEEEEEec----------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEec-CCCCEEEEe
Q 010390 281 SQDSNGVFLTASCM----------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGS-SDGNAYVWQ 348 (512)
Q Consensus 281 ~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~-~dg~i~iw~ 348 (512)
.+++++..++++.. .+.|.++|..+.+ .+..+.. ......++|+|||+ +++++. .++.|.+||
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~--vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ--TSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE--EEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 89999998888653 3579999986532 3333322 22355699999999 677776 589999999
Q ss_pred cCCCCCC
Q 010390 349 VNKPQAD 355 (512)
Q Consensus 349 ~~~~~~~ 355 (512)
+.+.+..
T Consensus 348 ~~t~~vv 354 (373)
T 2mad_H 348 AGAGDQD 354 (373)
T ss_pred CCCCCEE
Confidence 9987763
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=1.8e-12 Score=119.87 Aligned_cols=192 Identities=13% Similarity=0.074 Sum_probs=133.3
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 131 (512)
+++.+++ ++...++++|+.++ +++|+++........... +..... ...+.. |+.++| |+.+|+++ .++.
T Consensus 39 ~~nlLai---s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~--~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDI---SNSKSLFVAASGSK-AVVGELQLLRDHITSDST--PLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEE---ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSC--CCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred cccEEEE---cCCCCEEEEeCCCE-EEEEEhhHhhhhhccccc--cccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCc
Confidence 5778888 99999999999885 666997643210000000 011111 224556 999999 89999998 8899
Q ss_pred EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390 132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK 211 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (512)
|++||+.+.........|...+.++.+.+. .++++..||.|.+||+.++...
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~------------------------- 159 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTK------------------------- 159 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEE-------------------------
T ss_pred EEEEEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCccc-------------------------
Confidence 999999877665566667788988877653 3888899999999999865421
Q ss_pred cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc--eecccCCCccccccccccccCeeEEEeCCCCCEE
Q 010390 212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA--QITQAWPHAESSSAKETRLHGISSLSQDSNGVFL 289 (512)
Q Consensus 212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 289 (512)
.+...|+|++|+|+| +++ |..||.+++|+...... ......+.. ......+...|.++.|.+++.++
T Consensus 160 ------~~~~~Vs~v~WSpkG--~~v-g~~dg~i~~~~~~~~~~~~k~~I~~Pp~--~~~~~~~~~~V~sI~wl~~~~fl 228 (388)
T 1xip_A 160 ------QLAQNVTSFDVTNSQ--LAV-LLKDRSFQSFAWRNGEMEKQFEFSLPSE--LEELPVEEYSPLSVTILSPQDFL 228 (388)
T ss_dssp ------EEEESEEEEEECSSE--EEE-EETTSCEEEEEEETTEEEEEEEECCCHH--HHTSCTTTSEEEEEEESSSSEEE
T ss_pred ------cccCCceEEEEcCCc--eEE-EEcCCcEEEEcCCCccccccceecCCcc--cccccCCCeeEEEEEEecCCeEE
Confidence 123479999999999 333 66799999998887664 323222211 00011356789999999999888
Q ss_pred EEEe
Q 010390 290 TASC 293 (512)
Q Consensus 290 ~~~~ 293 (512)
++-.
T Consensus 229 v~y~ 232 (388)
T 1xip_A 229 AVFG 232 (388)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7643
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=6e-12 Score=129.62 Aligned_cols=244 Identities=10% Similarity=-0.050 Sum_probs=149.4
Q ss_pred CcceEEEEEecCCCcEEEEeeCC-----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDED-----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~ 126 (512)
.+.+++| ||||++||.+..+ ..|++||+.+++. +. ...+...+..++|+|| +.|+.+
T Consensus 164 ~~~~~~~---SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~-------------~~-~~~~~~~~~~~~wspD-~~l~~~ 225 (741)
T 1yr2_A 164 ALDAWAA---SDDGRLLAYSVQDGGSDWRTVKFVGVADGKP-------------LA-DELKWVKFSGLAWLGN-DALLYS 225 (741)
T ss_dssp EEEEEEE---CTTSSEEEEEEEETTCSEEEEEEEETTTCCE-------------EE-EEEEEEESCCCEESTT-SEEEEE
T ss_pred EEEeEEE---CCCCCEEEEEEcCCCCceEEEEEEECCCCCC-------------CC-ccCCCceeccEEEECC-CEEEEE
Confidence 3445555 9999999987543 4599999988753 11 1111112357899999 999988
Q ss_pred eCCCc--------------EEEEeCCCCe----eeecccCcCCCEEEEEeeCCCCCeEEEEeCC-----CcEEEEeCCCC
Q 010390 127 SGDQT--------------IKIWDAEKKK----CTGALMGHTGSIKSLCSHPTNSDILVSGSRD-----GSFAIWDLRCK 183 (512)
Q Consensus 127 ~~dg~--------------i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~ 183 (512)
+.++. |++|++.++. .+.....+...+..+.|+|++ ++|+..+.+ ..|.+||+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCC
Confidence 77654 8999998765 222233344468899999998 666666544 38999998754
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec---CCeEEEEeccCcc-ceecc
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV---NSIVKFWDTRNLK-AQITQ 259 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~---dg~i~iwd~~~~~-~~~~~ 259 (512)
.... ...+..+...+... +.+++..+++.+.. ++.|.+||+.+.. .....
T Consensus 305 ~~~~-------------------------~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l 358 (741)
T 1yr2_A 305 KIGP-------------------------VTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV 358 (741)
T ss_dssp EECC-------------------------CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE
T ss_pred CCcc-------------------------cEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE
Confidence 1100 00111222233333 34888888876532 4569999988742 11111
Q ss_pred cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE--
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-- 337 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-- 337 (512)
...+...+..+.++ ++.++++...++..++|.+.. .......+... ....+..++++|+++.|+.
T Consensus 359 ----------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 359 ----------VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL-DGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp ----------ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET-TSCEEEECBCS-SSCEEEEEECCBTCSCEEEEE
T ss_pred ----------ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-CCCceeeccCC-CCeEEEEeecCCCCCEEEEEE
Confidence 11222336667777 667788888899877776542 12223333221 1344667889999886652
Q ss_pred --ecCCCCEEEEecCCCC
Q 010390 338 --GSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 338 --g~~dg~i~iw~~~~~~ 353 (512)
....+.|++||+.+++
T Consensus 426 ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 426 SSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTEEEEEEEEETTTTE
T ss_pred cCCCCCCEEEEEECCCCc
Confidence 3345789999997754
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=6e-11 Score=112.50 Aligned_cols=244 Identities=9% Similarity=0.035 Sum_probs=161.9
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCC
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSP 186 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~ 186 (512)
.....|+|+++++++++...++.|++||..+++......... ... ++|++++ ..|+++..++ .|.+|+.......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCcee
Confidence 478899999999877777778999999998887665544322 233 8999988 7777777765 7888887643321
Q ss_pred CCccccceeeecccccccccccccccceeccc-ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA-ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 265 (512)
... ..... ....+.+++++|++..++++. .++.|..||..+..........
T Consensus 208 ~~~------------------------g~~~~~~~~~p~~iav~p~~g~lyv~d-~~~~I~~~d~~~~~~~~~~~~~--- 259 (409)
T 3hrp_A 208 TRI------------------------GQLGSTFSGKIGAVALDETEEWLYFVD-SNKNFGRFNVKTQEVTLIKQLE--- 259 (409)
T ss_dssp EEE------------------------EECCTTSCSCCCBCEECTTSSEEEEEC-TTCEEEEEETTTCCEEEEEECC---
T ss_pred EEe------------------------eeccchhcCCcEEEEEeCCCCeEEEEE-CCCcEEEEECCCCCEEEEeccc---
Confidence 100 00001 234677899999666666643 5889999999876533211000
Q ss_pred ccccccccccC--eeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeece-------------eceeEEEEEEC
Q 010390 266 SSSAKETRLHG--ISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-------------IESFYVKSEIC 329 (512)
Q Consensus 266 ~~~~~~~~~~~--i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s 329 (512)
....... ...++|+|+ +.++++-..++.|+.|+.... ...+.+.. .-.....++++
T Consensus 260 ----~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d 331 (409)
T 3hrp_A 260 ----LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVD 331 (409)
T ss_dssp ----CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC
T ss_pred ----ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe
Confidence 0111111 138999995 555556667789999986431 22222221 01236679999
Q ss_pred CCCCEEEEec-CCCCEEEEecCCCCCCCceeccc---------------cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 330 PNASHILSGS-SDGNAYVWQVNKPQADPIKLKSH---------------DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 330 ~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~h---------------~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
++|+++++-. .++.|+.|++.++.. ..+.++ -.....+++++++ .++++-..++.|+.+++
T Consensus 332 ~dG~lyvad~~~~~~I~~~~~~~G~v--~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 332 EDGNFYIVDGFKGYCLRKLDILDGYV--STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCCEEEEETTTTCEEEEEETTTTEE--EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEeCCCCCEEEEEECCCCEE--EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEe
Confidence 9999888877 889999999766543 233333 2468999999998 78888888889988876
Q ss_pred C
Q 010390 394 E 394 (512)
Q Consensus 394 ~ 394 (512)
+
T Consensus 409 e 409 (409)
T 3hrp_A 409 E 409 (409)
T ss_dssp C
T ss_pred C
Confidence 3
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=3.6e-11 Score=113.99 Aligned_cols=252 Identities=9% Similarity=0.023 Sum_probs=158.4
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC--
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ-- 130 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-- 130 (512)
+..|++ +++++++++...++.|++||.+++.. ..+........ ++|+++++.|+++..++
T Consensus 133 P~~la~---d~~g~lyv~d~~~~~I~~id~~~g~~--------------~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 133 MWGIAA---VGNNTVLAYQRDDPRVRLISVDDNKV--------------TTVHPGFKGGK-PAVTKDKQRVYSIGWEGTH 194 (409)
T ss_dssp EEEEEE---CSTTEEEEEETTTTEEEEEETTTTEE--------------EEEEETCCBCB-CEECTTSSEEEEEBSSTTC
T ss_pred ceEEEE---eCCCCEEEEecCCCcEEEEECCCCEE--------------EEeeccCCCCc-eeEecCCCcEEEEecCCCc
Confidence 445555 99999888888889999999876532 11111122333 89999999999888766
Q ss_pred cEEEEeCCCCeeeecc----cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 131 TIKIWDAEKKKCTGAL----MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
.|.+|+...+.....+ ......+.+++++|+++. |+.+..++.|+.||..++...... ..
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~-------~~-------- 258 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIK-------QL-------- 258 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEE-------EC--------
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEe-------cc--------
Confidence 7888887765443333 224456788999996534 444677889999998755311100 00
Q ss_pred ccccccceeccccccc--EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc--ccccccccCeeEEEe
Q 010390 207 LSQSKRVSRRKAASMS--ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS--SAKETRLHGISSLSQ 282 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~ 282 (512)
........ ...++|+|++..++++...++.|+.|+.........-........ ............+++
T Consensus 259 --------~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~ 330 (409)
T 3hrp_A 259 --------ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTV 330 (409)
T ss_dssp --------CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred --------cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence 00001111 128999997677777676789999999775421111000000000 000111244789999
Q ss_pred CCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeece-------------eceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390 283 DSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCR-------------IESFYVKSEICPNASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 283 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~ 348 (512)
+++|+++++-. .++.|+.|++.+. .+..+.+.. .-.....+++++++.++++-..++.|+.++
T Consensus 331 d~dG~lyvad~~~~~~I~~~~~~~G---~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 331 DEDGNFYIVDGFKGYCLRKLDILDG---YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp CTTCCEEEEETTTTCEEEEEETTTT---EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred eCCCCEEEEeCCCCCEEEEEECCCC---EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 99999777777 7899999996442 233333320 013467799999988888888888898876
Q ss_pred c
Q 010390 349 V 349 (512)
Q Consensus 349 ~ 349 (512)
+
T Consensus 408 ~ 408 (409)
T 3hrp_A 408 V 408 (409)
T ss_dssp E
T ss_pred e
Confidence 5
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=2.5e-10 Score=103.55 Aligned_cols=239 Identities=8% Similarity=-0.015 Sum_probs=147.6
Q ss_pred CCCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390 107 HQNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS 185 (512)
Q Consensus 107 h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 185 (512)
+..--.+..|++++. .+++...++.|..||..+++.. .+. ....+.++++++++ +++++ . ++.|.+||..+++.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcE
Confidence 344566889999655 4556667899999999887652 232 44679999999988 55544 4 56899999875432
Q ss_pred CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC--------CeEEEEeccCcccee
Q 010390 186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--------SIVKFWDTRNLKAQI 257 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--------g~i~iwd~~~~~~~~ 257 (512)
...... ........+..++++|+|+.++.....+ ..-.+|.+.......
T Consensus 86 ~~~~~~-----------------------~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 142 (297)
T 3g4e_A 86 VVLATV-----------------------DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK 142 (297)
T ss_dssp EEEEEC-----------------------CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred EEEEec-----------------------CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence 110000 0001123578899999999766543211 223444443221111
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCc--eEeeeec-eeceeEEEEEECCCCC
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGP--IQHFSGC-RIESFYVKSEICPNAS 333 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~--~~~~~~~-~~~~~~~~~~~s~~~~ 333 (512)
...........++|+|+++.|+.+ +.++.|.+||+....... ...+... ........++++++|+
T Consensus 143 -----------~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~ 211 (297)
T 3g4e_A 143 -----------KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK 211 (297)
T ss_dssp -----------EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred -----------EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence 112222346789999999877554 567899999974211111 1111111 1123456789999998
Q ss_pred EEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeC-CCCCCeEEEEeCC
Q 010390 334 HILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC-PNEAGKIVTSSDD 385 (512)
Q Consensus 334 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~l~s~~~d 385 (512)
+.++...++.|..||..+++. ...+..+...+++++|. |++..++++...+
T Consensus 212 lwva~~~~~~v~~~d~~tG~~-~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTGKR-LQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEEEETTTEEEEECTTTCCE-EEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEEEcCCCEEEEEcCCCceE-EEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 888877778899999987665 34555566789999998 7873445555443
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.40 E-value=6.8e-12 Score=116.50 Aligned_cols=274 Identities=8% Similarity=0.065 Sum_probs=164.9
Q ss_pred CCcceEEEEEecCCCcEEEEee--CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSD--EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
..+..|++ +++|+++++.. .++.++||.+.++.. . .+. .. ......|...+..+++.++++++++-..
T Consensus 17 ~~p~~va~---~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~-~~p---~~--~~~~~~~~~~p~gv~~d~~g~L~v~D~g 86 (343)
T 2qe8_A 17 LAPGNITL---TPDGRLFLSLHQFYQPEMQVAELTQDGL-I-PFP---PQ--SGNAIITFDTVLGIKSDGNGIVWMLDNG 86 (343)
T ss_dssp SCEEEEEE---CTTSCEEEEECGGGCCSCSEEEEETTEE-E-ESC---CC--CSSCCCCCSCEEEEEECSSSEEEEEECH
T ss_pred CCcceEEE---CCCCCEEEEeCCCCCCceEEEEECCCCe-e-cCC---Cc--ccCcccceeEeeEEEEcCCCcEEEEcCC
Confidence 67888998 99999988853 234366666543211 0 000 00 0112346678999999999876665433
Q ss_pred -----CCcEEEEeCCCCeeeecccC------cCCCEEEEEeeCCCCCeEEEEe---CCCcEEEEeCCCCCCCCCccccce
Q 010390 129 -----DQTIKIWDAEKKKCTGALMG------HTGSIKSLCSHPTNSDILVSGS---RDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 129 -----dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
++.|.+||+.+++.+..+.. +...+..+++.++++..+++.. .++.|.+||+.+++.....
T Consensus 87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~----- 161 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL----- 161 (343)
T ss_dssp HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC-----
T ss_pred CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe-----
Confidence 57899999999986665532 2245689999986645556655 6789999999765421110
Q ss_pred eeecccccccccccccccceeccccccc-EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMS-ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
..|... .....+..++..+.+ ...++.+..|.
T Consensus 162 ----------------------~~~~~~~~~~~~~~~~g~~~~~-~~~~g~~~~~~------------------------ 194 (343)
T 2qe8_A 162 ----------------------QGYPGIAPEDIDLVIDGVPVQI-GQPDGTVIRPH------------------------ 194 (343)
T ss_dssp ----------------------TTCTTTSCCSCCCEETTEECBE-ECTTSCEECCC------------------------
T ss_pred ----------------------cCCCcccccccceeECCEEEEe-ccCCCceecee------------------------
Confidence 000000 000223334544433 23455554432
Q ss_pred ccCeeEEEeCCCCCEEEEEecCC-eEEEEEcccCCCC---------ceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390 274 LHGISSLSQDSNGVFLTASCMDH-RIYLYNVLQLDKG---------PIQHFSGCRIESFYVKSEICPNASHILSGSSDGN 343 (512)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 343 (512)
..+..|+++|+++.|+++...+ .+..++....... .+... +. ......++++++|.++++...++.
T Consensus 195 -~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~--~g~pdgia~d~~G~l~va~~~~~~ 270 (343)
T 2qe8_A 195 -LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SE--KPICDGISIDKDHNIYVGDLAHSA 270 (343)
T ss_dssp -CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EE--CCSCSCEEECTTCCEEEEEGGGTE
T ss_pred -cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-cc--CCCCceEEECCCCCEEEEccCCCe
Confidence 1267799999999888887665 6666654221110 00111 11 112334899999999999988999
Q ss_pred EEEEecCCCCCCCceec-cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 344 AYVWQVNKPQADPIKLK-SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 344 i~iw~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
|.+||..+++.. .... .+-..+.+++|.+++ .++++.+..+.+.+|.
T Consensus 271 V~~~d~~~G~~~-~~~~~~~~~~p~~va~~~~g-~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 271 IGVITSADRAYK-LLVTDEKLSWTDSFNFGSDG-YLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEEETTTTEEE-EEEECGGGSCEEEEEECTTS-CEEEEECCGGGSGGGB
T ss_pred EEEEECCCCCEE-EEEECCceecCCeeEECCCC-cEEEEeCccccccccc
Confidence 999998444321 1221 224568999999988 7887777655554444
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.40 E-value=2e-11 Score=124.59 Aligned_cols=251 Identities=12% Similarity=0.065 Sum_probs=154.9
Q ss_pred cCCCcEEEEEEecCCCEEEEE-----eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC-------
Q 010390 106 AHQNAIFDLCWIKEDTNILTA-----SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG------- 173 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg------- 173 (512)
+|...+..++|||||++||.+ +.+..|++||+.+++.+.... +......++|+ ++ +.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GN-EGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TT-TEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CC-CEEEEEEecCccccccc
Confidence 466689999999999999843 233579999999998654311 11112467899 88 6677766663
Q ss_pred ------cEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccc-ccccEEEEEEeecCCEEEEEeec---CC
Q 010390 174 ------SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA-ASMSITSVLYLKDEVSIATASAV---NS 243 (512)
Q Consensus 174 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~g~~---dg 243 (512)
.|++|++.+...... .+..... +.....++.|+|+++.++++... +.
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~-----------------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 259 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDR-----------------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGN 259 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCE-----------------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred ccCCCcEEEEEECCCCcccce-----------------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence 388888875432110 0111112 33457789999999998765542 25
Q ss_pred eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cC---CeEEEEEcccCCCCceEeeeecee
Q 010390 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MD---HRIYLYNVLQLDKGPIQHFSGCRI 319 (512)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~~~~~~~~~~~~ 319 (512)
.|+++|+.++..... .+..+....... +++++..|+..+ .+ +.|..+|+..........+..+..
T Consensus 260 ~i~~~d~~~~~~~~~----------~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 328 (693)
T 3iuj_A 260 RLYVKDLSQENAPLL----------TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ 328 (693)
T ss_dssp EEEEEETTSTTCCCE----------EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred EEEEEECCCCCCceE----------EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence 899999887642211 122222333333 555665555443 33 689999987654322334444432
Q ss_pred ceeEEEEEECCCCCEEEEecCCC---CEEEEecCCCCCCCcee-ccccCCeEEEEeCCCCCCeEEEEeC---CCcEEEEe
Q 010390 320 ESFYVKSEICPNASHILSGSSDG---NAYVWQVNKPQADPIKL-KSHDGEVTAVNWCPNEAGKIVTSSD---DYTVRLWS 392 (512)
Q Consensus 320 ~~~~~~~~~s~~~~~l~~g~~dg---~i~iw~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~---dg~i~vwd 392 (512)
. +. .|++++++|+....++ .|++|++..... ..+ ....+.+..+.+++++..++++.+. -+.|..||
T Consensus 329 ~--~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~--~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 329 Q--VL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV--REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp S--CE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE--EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred C--EE--EEEEECCEEEEEEEECCeeEEEEEECCCCee--EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 2 22 7889998887665543 688998875432 222 2345568888888888444444443 27899999
Q ss_pred CCCCccc
Q 010390 393 LENSRCS 399 (512)
Q Consensus 393 ~~~~~~~ 399 (512)
+.+++..
T Consensus 403 ~~~g~~~ 409 (693)
T 3iuj_A 403 PKSGAIS 409 (693)
T ss_dssp TTTCCEE
T ss_pred CCCCeEE
Confidence 9887643
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.38 E-value=3.2e-10 Score=102.90 Aligned_cols=230 Identities=9% Similarity=-0.019 Sum_probs=144.4
Q ss_pred CcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 52 PPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 52 ~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
-..+..| +++ +.++++...++.|..||..++.. ..+ .....+.+++++++++++++ . ++
T Consensus 14 ~~Egp~w---~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~-~~~~~~~~i~~~~dG~l~v~-~-~~ 73 (297)
T 3g4e_A 14 CGESPVW---EEVSNSLLFVDIPAKKVCRWDSFTKQV--------------QRV-TMDAPVSSVALRQSGGYVAT-I-GT 73 (297)
T ss_dssp BEEEEEE---ETTTTEEEEEETTTTEEEEEETTTCCE--------------EEE-ECSSCEEEEEEBTTSSEEEE-E-TT
T ss_pred cccCCeE---ECCCCEEEEEECCCCEEEEEECCCCcE--------------EEE-eCCCceEEEEECCCCCEEEE-E-CC
Confidence 3456777 774 56777777889999999876531 111 23467999999999995554 4 56
Q ss_pred cEEEEeCCCCeeeecccC----cCCCEEEEEeeCCCCCeEEEEeCC---------CcEEEEeCCCCCCCCCccccceeee
Q 010390 131 TIKIWDAEKKKCTGALMG----HTGSIKSLCSHPTNSDILVSGSRD---------GSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
.|.+||..+++....... ....++.+++.|++ +++++...+ ..-.+|.+.......
T Consensus 74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~---------- 142 (297)
T 3g4e_A 74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVK---------- 142 (297)
T ss_dssp EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE----------
T ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEE----------
Confidence 799999988765332221 12357899999988 666554322 233455544221100
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--CccceecccCCCcccccccccccc
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
...........++|+|+++.++++.+.++.|.+||+. ++........ ........
T Consensus 143 -----------------~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~------~~~~~~~~ 199 (297)
T 3g4e_A 143 -----------------KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV------YKLEKEEQ 199 (297)
T ss_dssp -----------------EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE------EECCGGGC
T ss_pred -----------------EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE------EECCCCCC
Confidence 1111223567899999999888877778999999974 3332110000 01112234
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC-CCCCEEEEec
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-PNASHILSGS 339 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~ 339 (512)
....++++++|++.++....+.|.+||..+++ .+..+... ...+++++|. |+++.|+.++
T Consensus 200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~--~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK--RLQTVKLP--VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEEEBTTSCEEEEEETTTEEEEECTTTCC--EEEEEECS--SSBEEEEEEESGGGCEEEEEE
T ss_pred CCCeeEECCCCCEEEEEcCCCEEEEEcCCCce--EEEEEECC--CCCceEEEEeCCCCCEEEEEc
Confidence 57889999999877777778899999975432 33333322 1346789998 7877665443
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.2e-10 Score=106.27 Aligned_cols=242 Identities=9% Similarity=0.004 Sum_probs=150.1
Q ss_pred eeccccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 101 ISDWVAHQNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
+..+...........|+|+++ ++++...++.|..|+. +++ ...+..+...+..+++.+++ +++++...++.|.+|+
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSD 113 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEEC
Confidence 344445556778899999998 5567777899999997 454 34454566779999999988 6666655667899998
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE---eec-------------CC
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA---SAV-------------NS 243 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---g~~-------------dg 243 (512)
.. ++... ... .........+..+++.++|..+++- |.. .+
T Consensus 114 ~~-g~~~~-~~~----------------------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 114 AD-GQAHL-LVG----------------------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp TT-SCEEE-EEC----------------------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred CC-CCEEE-EEe----------------------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC
Confidence 75 32110 000 0000112346778999999877641 211 25
Q ss_pred eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC------CeEEEEEcccCCCCceEeeeec
Q 010390 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD------HRIYLYNVLQLDKGPIQHFSGC 317 (512)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~ 317 (512)
.|..||..+++.... . .......++|+|+++.|+++... +.|.+|++..........+...
T Consensus 170 ~v~~~d~~~g~~~~~------------~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 236 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRM------------A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV 236 (305)
T ss_dssp EEEEECSSSCCCEEE------------E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC
T ss_pred eEEEEcCCCCcEEEE------------e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC
Confidence 677777765543321 1 22346789999999988887665 7899999864220001111100
Q ss_pred eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390 318 RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVR 389 (512)
Q Consensus 318 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 389 (512)
.......++++++|++.++. .++ |.+|+... +. ...+..+. .+.+++|.+++ +.|..++.++..+
T Consensus 237 -~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~~g-~~-~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~l~~ 301 (305)
T 3dr2_A 237 -PDGLPDGFCVDRGGWLWSSS-GTG-VCVFDSDG-QL-LGHIPTPG-TASNCTFDQAQ-QRLFITGGPCLWM 301 (305)
T ss_dssp -SSSCCCSEEECTTSCEEECC-SSE-EEEECTTS-CE-EEEEECSS-CCCEEEECTTS-CEEEEEETTEEEE
T ss_pred -CCCCCCeEEECCCCCEEEec-CCc-EEEECCCC-CE-EEEEECCC-ceeEEEEeCCC-CEEEEEcCCeEEE
Confidence 01122347889999955444 455 99999843 32 23343333 58899999888 6777766665433
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.36 E-value=6.8e-11 Score=120.62 Aligned_cols=244 Identities=12% Similarity=0.089 Sum_probs=148.7
Q ss_pred CccCCcceEEEEEecCCCcEEEEe-----eCCCcEEEEECCCCCCccccccccccccceeccccCCCc--EEEEEEecCC
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVS-----DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA--IFDLCWIKED 120 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~s~~~ 120 (512)
+|...+.+++| ||||++||.+ +.+..|++||+.+++. +.. +... ...++|+ |+
T Consensus 126 ~~~~~l~~~~~---SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-------------~~~---~~~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 126 DGTTALDQLSF---SRDGRILAYSLSLAGSDWREIHLMDVESKQP-------------LET---PLKDVKFSGISWL-GN 185 (693)
T ss_dssp TSCCEEEEEEE---CTTSSEEEEEEECSSCCEEEEEEEETTTCSE-------------EEE---EEEEEESCCCEEE-TT
T ss_pred CCcEEEEEEEE---CCCCCEEEEEEecCCCceEEEEEEECCCCCC-------------Ccc---ccCCceeccEEEe-CC
Confidence 45544555555 9999999854 3335799999988753 110 1112 2467899 99
Q ss_pred CEEEEEeCCCc-------------EEEEeCCCCe----eeecccC-cCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEe
Q 010390 121 TNILTASGDQT-------------IKIWDAEKKK----CTGALMG-HTGSIKSLCSHPTNSDILVSGSRD---GSFAIWD 179 (512)
Q Consensus 121 ~~l~s~~~dg~-------------i~iwd~~~~~----~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd 179 (512)
+.|+.++.+.. |++|++.++. ++..... |...+..+.|+|++..++++.+.+ ..|.++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 99998887743 9999998764 3333344 455678899999994444554432 5899999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC---CeEEEEeccCccce
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN---SIVKFWDTRNLKAQ 256 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d---g~i~iwd~~~~~~~ 256 (512)
+.++.... ..+..+....... +++++..++..+..+ +.|..+|+.++...
T Consensus 266 ~~~~~~~~--------------------------~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~ 318 (693)
T 3iuj_A 266 LSQENAPL--------------------------LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA 318 (693)
T ss_dssp TTSTTCCC--------------------------EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred CCCCCCce--------------------------EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 87653211 0111222233333 667777776655443 68999999876431
Q ss_pred ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC---eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390 257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH---RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 333 (512)
... .+..+...+. .|+++++.|+....++ .|++||+... ....+.. .....+..+.++++++
T Consensus 319 ~~~---------~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---~~~~l~~-p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 319 HWR---------DLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK---RVREVAL-PGLGSVSGFNGKHDDP 383 (693)
T ss_dssp GCE---------EEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC---EEEEECC-SSSSEEEECCCCTTCS
T ss_pred ccE---------EEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC---eeEEeec-CCCceEEeeecCCCCC
Confidence 000 1222223333 7888888887766543 6888887532 2222221 1123355567788887
Q ss_pred EEEEecCC----CCEEEEecCCCC
Q 010390 334 HILSGSSD----GNAYVWQVNKPQ 353 (512)
Q Consensus 334 ~l~~g~~d----g~i~iw~~~~~~ 353 (512)
.|+....+ +.|+.||+.+++
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEecCCCCCCEEEEEECCCCe
Confidence 76654433 789999987654
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.36 E-value=2.4e-11 Score=112.19 Aligned_cols=264 Identities=7% Similarity=-0.073 Sum_probs=163.2
Q ss_pred cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCeeeec
Q 010390 76 YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS----------GDQTIKIWDAEKKKCTGA 145 (512)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~ 145 (512)
.|.++|..+.+. +.++..-..+ .+.++||+++++.+. .++.|.+||+.+++.+.+
T Consensus 47 ~vsvID~~t~~v-------------~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 47 ENWVSCAGCGVT-------------LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEEETTTTEE-------------EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred eEEEEECCCCeE-------------EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 788999887643 4445444455 799999999999876 368899999999999888
Q ss_pred ccCc-------CCCEEEEEeeCCCCCeEEEEeC--CCcEEE--EeCCCCCCCCCccccceeeecccccccccccccccce
Q 010390 146 LMGH-------TGSIKSLCSHPTNSDILVSGSR--DGSFAI--WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVS 214 (512)
Q Consensus 146 ~~~h-------~~~v~~l~~~~~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (512)
+... ......+.++|++ ++++.+.. +..|.+ +|..+ ...
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~t---v~~-------------------------- 161 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASD---DQL-------------------------- 161 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEE---EEE--------------------------
T ss_pred EECCCccccccCCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhh---ceE--------------------------
Confidence 7533 1235578999999 66666653 457888 88864 000
Q ss_pred ecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-----ccceecccCCCccccccccccccCeeEEEeCCCCCEE
Q 010390 215 RRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-----LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL 289 (512)
Q Consensus 215 ~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 289 (512)
... .. +....|++...+.+.+.|+.+.+.|+.+ ++...... . .......+. . .+++..+
T Consensus 162 -i~v-~~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~------~i~vg~~P~---~-~~~~~~~ 225 (368)
T 1mda_H 162 -TKS-AS---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-G------AQNCSSQAA---Q-ANYPGML 225 (368)
T ss_dssp -EEC-SS---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-T------TSCBCSCCE---E-ETTTTEE
T ss_pred -EEC-CC---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-e------eeeCCCCcc---c-cccCCEE
Confidence 000 00 1123456655555555788888888876 33221100 0 011111222 3 5555555
Q ss_pred EEEecCCeEEEEEcccCCCCceEeeeec--------eeceeEEEEEECCCCCEEEEecC---------CCCEEEEecCCC
Q 010390 290 TASCMDHRIYLYNVLQLDKGPIQHFSGC--------RIESFYVKSEICPNASHILSGSS---------DGNAYVWQVNKP 352 (512)
Q Consensus 290 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~g~~---------dg~i~iw~~~~~ 352 (512)
+..+. +.+.+.|+.......+..+.-. ........++++|+++.++.+.. ++.+.++|+.+.
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence 55555 9999999854221111111100 00000111579999988876532 235679999987
Q ss_pred CCCCceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCCCccccccc
Q 010390 353 QADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 353 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~ 403 (512)
+.. ..+... ....+++|+||+..++++.. .++.|.++|+.+++.+....
T Consensus 305 ~vv-~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 305 QTS-GPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CEE-ECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred eEE-EEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 653 233222 25889999999955777777 69999999999999877543
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=1.2e-11 Score=114.33 Aligned_cols=175 Identities=11% Similarity=0.033 Sum_probs=122.8
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---------eee-cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKK---------CTG-ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
.++.+++++...++++|+.++ +++|++.+.+ ... ....+.. |+.++| ++ ..|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEE
Confidence 689999999999999999986 6679865433 111 1223556 999999 55 788888 889999999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~ 259 (512)
+.+..... ....+...+.++.+.+.. +++ +..||.|.+||+.++....
T Consensus 113 v~sl~~~~---------------------------~~~~~~~~v~~i~~~~p~--~av-~~~dG~L~v~dl~~~~~~~-- 160 (388)
T 1xip_A 113 LEELSEFR---------------------------TVTSFEKPVFQLKNVNNT--LVI-LNSVNDLSALDLRTKSTKQ-- 160 (388)
T ss_dssp SSSTTCEE---------------------------EEEECSSCEEEEEECSSE--EEE-EETTSEEEEEETTTCCEEE--
T ss_pred chhhhccC---------------------------ccceeecceeeEEecCCC--EEE-EECCCCEEEEEccCCcccc--
Confidence 98654211 122334456677665542 555 4579999999999765431
Q ss_pred cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee----c---eeceeEEEEEECCCC
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG----C---RIESFYVKSEICPNA 332 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~---~~~~~~~~~~~s~~~ 332 (512)
+...|++++|+|+| ++.|..||.+++|+...........+.. . .....+.++.|.+++
T Consensus 161 -------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 161 -------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp -------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred -------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 23579999999999 6789999999999875433111223311 0 124668899999999
Q ss_pred CEEEE
Q 010390 333 SHILS 337 (512)
Q Consensus 333 ~~l~~ 337 (512)
.++++
T Consensus 226 ~flv~ 230 (388)
T 1xip_A 226 DFLAV 230 (388)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99886
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.35 E-value=2.3e-10 Score=105.39 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=155.2
Q ss_pred eEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceeccccC-------CCcEEEEEEe
Q 010390 55 AVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-------QNAIFDLCWI 117 (512)
Q Consensus 55 ~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~s 117 (512)
.+.+ +|||++++++. .++.|.+||..+.+. +.++.-. ...-..+.|+
T Consensus 82 ~va~---spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v-------------~~~I~v~~g~r~~~g~~P~~~a~s 145 (386)
T 3sjl_D 82 NPVV---ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP-------------TADIELPDAPRFLVGTYPWMTSLT 145 (386)
T ss_dssp EEEE---CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-------------EEEEEETTCCCCCBSCCGGGEEEC
T ss_pred cEEE---CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE-------------EEEEECCCccccccCCCCceEEEc
Confidence 3777 99999887775 367899999988653 2222110 1234568999
Q ss_pred cCCCEEEEEeC--CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 118 KEDTNILTASG--DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 118 ~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
|||++|+.+.. ++.|.++|+.+++.+.++.... . ....|.+...+++.+.||.+.+.++...........
T Consensus 146 pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~---- 217 (386)
T 3sjl_D 146 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT---- 217 (386)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC----
T ss_pred CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec----
Confidence 99999998764 6899999999999988885322 1 223465657888999999999999876322210000
Q ss_pred eecccccccccccccccceecccccccE-EEEEEe-ecCCEEEEEeecCCeEEEEeccCccceecccCC-Cccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSI-TSVLYL-KDEVSIATASAVNSIVKFWDTRNLKAQITQAWP-HAESSSAKET 272 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~ 272 (512)
..+......+ ....|. ++|+.+++ . .+|.|++.|+.+.......... ..........
T Consensus 218 ------------------~~~~~~~~~~~~~~~~~~~dG~~~~v-s-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~ 277 (386)
T 3sjl_D 218 ------------------EVFHPEDEFLINHPAYSQKAGRLVWP-T-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 277 (386)
T ss_dssp ------------------CCCSCTTSCBCSCCEEETTTTEEEEE-B-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred ------------------ceeccccccccccceeEcCCCcEEEE-e-CCCEEEEEECCCCcceeecceeccccccccccc
Confidence 0000000111 122554 56655554 3 5899999999766432211000 0000000111
Q ss_pred cccCeeEEEeCCCCCEEEEEec----------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEE-ecC
Q 010390 273 RLHGISSLSQDSNGVFLTASCM----------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILS-GSS 340 (512)
Q Consensus 273 ~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~-g~~ 340 (512)
.......++++++++.+++... .+.|.++|+.+.+ .+..+.-. .....+++++|++ +|++ ...
T Consensus 278 ~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k--v~~~i~vg---~~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 278 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--RLAKFEMG---HEIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEE---EEECEEEECSSSSCEEEEEETT
T ss_pred cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe--EEEEEECC---CCcceEEECCCCCeEEEEEcCC
Confidence 2234556888999998888753 2579999987643 33333221 2355699999997 6655 455
Q ss_pred CCCEEEEecCCCCC
Q 010390 341 DGNAYVWQVNKPQA 354 (512)
Q Consensus 341 dg~i~iw~~~~~~~ 354 (512)
++.|.++|..+++.
T Consensus 353 ~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 353 DKTLYIHDAESGEE 366 (386)
T ss_dssp TTEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcE
Confidence 89999999988765
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.32 E-value=2e-09 Score=99.05 Aligned_cols=233 Identities=8% Similarity=-0.068 Sum_probs=143.0
Q ss_pred cEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390 110 AIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS 188 (512)
Q Consensus 110 ~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 188 (512)
...+..|+|++. .+++...++.|..||..+++... +. ....+.+++|.+++ .++++. .+ .|.+||..+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg-~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDS-KQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETT-EEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCC-eEEEEE-CC-CEEEEECCCCcEEEE
Confidence 346788999755 45566678899999998876432 32 34679999999987 666554 44 499999876542110
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec-----CCeEEEEeccCccceecccCCC
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-----NSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-----dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
... ........+.++.++++|+.++..... .+.|..++ +++...
T Consensus 125 ~~~-----------------------~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~------ 173 (326)
T 2ghs_A 125 AEL-----------------------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK------ 173 (326)
T ss_dssp ECS-----------------------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE------
T ss_pred eeC-----------------------CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE------
Confidence 000 000112358899999999876653321 24566666 332211
Q ss_pred ccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcc--cC-CCCceEeeeec-eeceeEEEEEECCCCCEEEEe
Q 010390 264 AESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVL--QL-DKGPIQHFSGC-RIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~-~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g 338 (512)
..........++|+++++.|+.+. .++.|.+||+. ++ .......+... ........++++++|++.++.
T Consensus 174 ------~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 174 ------LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp ------EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred ------eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 111223467899999998776554 56899999985 32 21111112111 112234568999999887777
Q ss_pred cCCCCEEEEecCCCCCCCceeccccCCeEEEEeC-CCCCCeEEEEeCCC
Q 010390 339 SSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC-PNEAGKIVTSSDDY 386 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~l~s~~~dg 386 (512)
..++.|.+|+.. ++. ...+..+...+++++|. +++..++++...++
T Consensus 248 ~~~~~v~~~d~~-g~~-~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 248 WGEGAVDRYDTD-GNH-IARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp ETTTEEEEECTT-CCE-EEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred eCCCEEEEECCC-CCE-EEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 667789999984 333 34455556679999998 88733444544443
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.29 E-value=2.7e-10 Score=106.96 Aligned_cols=252 Identities=13% Similarity=0.080 Sum_probs=159.3
Q ss_pred eEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceecccc-------CCCcEEEEEEe
Q 010390 55 AVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVA-------HQNAIFDLCWI 117 (512)
Q Consensus 55 ~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~s 117 (512)
.|.+ +|||++|+++. .++.|.++|..+.+. +.++.- .......+.|+
T Consensus 122 gia~---SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v-------------v~~I~v~g~~r~~~g~~P~~~~~s 185 (426)
T 3c75_H 122 HPVA---AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP-------------IADIELPDAPRFLVGTYQWMNALT 185 (426)
T ss_dssp EEEE---CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-------------EEEEEETTCCCCCBSCCGGGSEEC
T ss_pred ceEE---CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE-------------EEEEECCCccccccCCCcceEEEc
Confidence 7888 99999888875 467899999987654 222110 11234568999
Q ss_pred cCCCEEEEEeC--CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 118 KEDTNILTASG--DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 118 ~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
|||++|+.+.. ++.|.+.|+.+++.+..+.... . ....|++...+++.+.||.+.+.+...++......
T Consensus 186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~----- 256 (426)
T 3c75_H 186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT----- 256 (426)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-----
T ss_pred CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-----
Confidence 99999998874 5789999999999888876422 1 33455555777888889999888884443221000
Q ss_pred eecccccccccccccccceeccccccc-EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc-cccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMS-ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE-SSSAKETR 273 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~ 273 (512)
..+.....+ ...+.+.+++..++... ..+.|.+.|................ ........
T Consensus 257 ------------------~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 257 ------------------EVFHTEDELLINHPAFSLRSGRLVWPT-YTGKIFQADLTAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp ------------------CCCSCTTSCBCSCCEECTTTCEEEEEB-TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred ------------------eeeccCCCceeeEeeecCCCCEEEEEe-CCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence 000000001 12346788888877755 5789999998755432211000000 00001111
Q ss_pred ccCeeEEEeCCCCCEEEEEec----------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEec-CC
Q 010390 274 LHGISSLSQDSNGVFLTASCM----------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGS-SD 341 (512)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~-~d 341 (512)
......+++++++..+++... ++.|.++|..+.+ .+..+... .....++|+||++ ++++.. .+
T Consensus 318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I~vg---~~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKIELG---HEIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEE---EEECEEEECCSSSCEEEEEETTT
T ss_pred cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe--EEEEEECC---CCcCeEEEccCCCEEEEEEcCCC
Confidence 223345789999988887653 3579999987643 33333221 2355689999999 787777 58
Q ss_pred CCEEEEecCCCCCC
Q 010390 342 GNAYVWQVNKPQAD 355 (512)
Q Consensus 342 g~i~iw~~~~~~~~ 355 (512)
+.|.++|+.+.+..
T Consensus 393 ~~VsVID~~t~kvv 406 (426)
T 3c75_H 393 QTLHIYDAATGEEL 406 (426)
T ss_dssp TEEEEEETTTCCEE
T ss_pred CeEEEEECCCCCEE
Confidence 99999999988763
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.29 E-value=6.6e-10 Score=101.26 Aligned_cols=228 Identities=9% Similarity=-0.016 Sum_probs=143.4
Q ss_pred cCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 50 ETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
.....+..| +|+|+ +++++..++.|..|+.... ...+..+...+..++++++|+++++...
T Consensus 44 ~~~~egp~~---~~~g~~l~~~d~~~~~i~~~~~~g~---------------~~~~~~~~~~~~gl~~d~dG~l~v~~~~ 105 (305)
T 3dr2_A 44 ATWSEGPAW---WEAQRTLVWSDLVGRRVLGWREDGT---------------VDVLLDATAFTNGNAVDAQQRLVHCEHG 105 (305)
T ss_dssp CSSEEEEEE---EGGGTEEEEEETTTTEEEEEETTSC---------------EEEEEESCSCEEEEEECTTSCEEEEETT
T ss_pred CcCccCCeE---eCCCCEEEEEECCCCEEEEEeCCCC---------------EEEEeCCCCccceeeECCCCCEEEEECC
Confidence 344567777 89998 6777778899999987422 2334446678999999999997666556
Q ss_pred CCcEEEEeCCCCeeeeccc---Cc-CCCEEEEEeeCCCCCeEEE----EeC-------------CCcEEEEeCCCCCCCC
Q 010390 129 DQTIKIWDAEKKKCTGALM---GH-TGSIKSLCSHPTNSDILVS----GSR-------------DGSFAIWDLRCKSSPK 187 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~---~h-~~~v~~l~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~ 187 (512)
++.|.+|+.. ++...... +. ...++.+++.+++ .++++ |.. .+.|..||..+++...
T Consensus 106 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 106 RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 6789999986 54322211 11 1346789999988 77775 332 2456666654433211
Q ss_pred CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec-----CCeEEEEeccCccceecccCC
Q 010390 188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-----NSIVKFWDTRNLKAQITQAWP 262 (512)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-----dg~i~iwd~~~~~~~~~~~~~ 262 (512)
.. .......++|+|+++.++++... ++.|.+|++..........
T Consensus 184 ----------------------------~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~-- 232 (305)
T 3dr2_A 184 ----------------------------MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH-- 232 (305)
T ss_dssp ----------------------------EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE--
T ss_pred ----------------------------Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE--
Confidence 01 12356789999999988876543 2789999987543110000
Q ss_pred CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390 263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG 342 (512)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 342 (512)
...........++++++|+ |+++..+ .|.+|+.. ...+..+.... .+..++|+++++.|+.++.++
T Consensus 233 ------~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~---g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 233 ------FASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD---GQLLGHIPTPG---TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ------EECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTT---SCEEEEEECSS---CCCEEEECTTSCEEEEEETTE
T ss_pred ------EEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCC---CCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCe
Confidence 0011123456789999999 4444444 59999863 23333333221 356689999998888777665
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.28 E-value=2.4e-09 Score=98.41 Aligned_cols=226 Identities=11% Similarity=0.021 Sum_probs=138.7
Q ss_pred ceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390 54 LAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI 132 (512)
Q Consensus 54 ~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 132 (512)
.+..| +|+ +.+++++..++.|.+||.+++.. ..+ .....+.+++|+++++++++. .++ |
T Consensus 52 egp~~---~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~-~~~~~v~~i~~~~dg~l~v~~-~~g-l 111 (326)
T 2ghs_A 52 EGPTF---DPASGTAWWFNILERELHELHLASGRK--------------TVH-ALPFMGSALAKISDSKQLIAS-DDG-L 111 (326)
T ss_dssp EEEEE---ETTTTEEEEEEGGGTEEEEEETTTTEE--------------EEE-ECSSCEEEEEEEETTEEEEEE-TTE-E
T ss_pred cCCeE---eCCCCEEEEEECCCCEEEEEECCCCcE--------------EEE-ECCCcceEEEEeCCCeEEEEE-CCC-E
Confidence 45666 886 55677777788999999876521 112 124679999999999877754 444 9
Q ss_pred EEEeCCCCeeeecccC----cCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 133 KIWDAEKKKCTGALMG----HTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
.+||..+++....... ....++.++++|++ +++++...+ +...+|.+.+++. .
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~~g~~-~----------------- 172 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKV-T----------------- 172 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEE-E-----------------
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEeCCcE-E-----------------
Confidence 9999988765332211 12358899999988 665554321 2233443322210 0
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--Cc-cceecccCCCccccccccccccCeeEEE
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NL-KAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
...........++|+|+++.++++...++.|.+||+. ++ ........ .........+..++
T Consensus 173 ----------~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~------~~~~~~~~~p~gi~ 236 (326)
T 2ghs_A 173 ----------KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF------IDSTGIKGGMDGSV 236 (326)
T ss_dssp ----------EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE------EECTTSSSEEEEEE
T ss_pred ----------EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEE------EECCCCCCCCCeeE
Confidence 0001123467899999999887776667899999986 44 21100000 00111223467899
Q ss_pred eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC-CCCCEEEEec
Q 010390 282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-PNASHILSGS 339 (512)
Q Consensus 282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~ 339 (512)
++++|.+.++...++.|.+||.. ...+..+... ...+.+++|+ ++++.|++++
T Consensus 237 ~d~~G~lwva~~~~~~v~~~d~~---g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 237 CDAEGHIWNARWGEGAVDRYDTD---GNHIARYEVP--GKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ECTTSCEEEEEETTTEEEEECTT---CCEEEEEECS--CSBEEEEEEESTTSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEECCC---CCEEEEEECC--CCCcEEEEEecCCCCEEEEEe
Confidence 99999877777677899999972 2233333322 2347788998 8877665443
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=1.4e-08 Score=94.11 Aligned_cols=230 Identities=11% Similarity=0.123 Sum_probs=139.8
Q ss_pred cCCCEEE-EEeCCCcEEEEeCCCC----eeeeccc------C-cCCCEEEEEeeCCCCCeEEEEeCC------CcEEEEe
Q 010390 118 KEDTNIL-TASGDQTIKIWDAEKK----KCTGALM------G-HTGSIKSLCSHPTNSDILVSGSRD------GSFAIWD 179 (512)
Q Consensus 118 ~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~------~-h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd 179 (512)
+++++|+ ++..++.|.|+|+.+. +...++. . ....-..+.+.|++ +++++..+ |.|.+.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 7787776 5666899999999755 5555552 1 11245567788987 66666555 7899999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe------------------ec
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS------------------AV 241 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g------------------~~ 241 (512)
..+.+........ ......-..+-|+|+++.++++. ..
T Consensus 171 ~~T~~v~~~~~~~------------------------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~ 226 (462)
T 2ece_A 171 HYSFEPLGKWEID------------------------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY 226 (462)
T ss_dssp TTTCCEEEECCSB------------------------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred CCCCeEEEEEccC------------------------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence 8876644322110 01112234678899999888753 23
Q ss_pred CCeEEEEeccCccceecccCCCccccccccccccCeeEEE--eCCCCCEEEEEec------CCeEEEEEcccCCCCceEe
Q 010390 242 NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS--QDSNGVFLTASCM------DHRIYLYNVLQLDKGPIQH 313 (512)
Q Consensus 242 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~ 313 (512)
+..|.+||+.+.+...+... .........+. ++|+++++++++. +++|.+|....+.......
T Consensus 227 ~d~V~v~D~~~~k~~~tI~v---------g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTL---------GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp CCEEEEEETTTTEEEEEEES---------CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEECCCCcEeeEEec---------CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 68999999998755443211 10112233444 4999999888774 5688877654321111111
Q ss_pred e--eece--------------eceeEEEEEECCCCCEEEEecC-CCCEEEEecCCCCCCC--cee-cc-------c----
Q 010390 314 F--SGCR--------------IESFYVKSEICPNASHILSGSS-DGNAYVWQVNKPQADP--IKL-KS-------H---- 362 (512)
Q Consensus 314 ~--~~~~--------------~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~--~~~-~~-------h---- 362 (512)
+ .... .......+.+|+||++|.++.. .+.|.+||+....... ... .+ |
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 1 1100 0133556899999999976654 6789999986443211 111 11 0
Q ss_pred --cCCeEEEEeCCCCCCeEEEEe
Q 010390 363 --DGEVTAVNWCPNEAGKIVTSS 383 (512)
Q Consensus 363 --~~~v~~v~~~~~~~~~l~s~~ 383 (512)
.+.-..++++||| ++|+.+.
T Consensus 378 ~~~ggPr~~~lSpDG-k~LyVaN 399 (462)
T 2ece_A 378 KLTGAPQMLEISRDG-RRVYVTN 399 (462)
T ss_dssp CCCSCCCCEEECTTS-SEEEEEC
T ss_pred cCCCCCCEEEEcCCC-CEEEEEc
Confidence 0135789999999 6776666
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.16 E-value=1.6e-08 Score=93.70 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=145.6
Q ss_pred CCCcEEEE-eeCCCcEEEEECCCCCCccccccccccccceecc-------ccCCCcEEEEEEecCCCEEEEEeCC-----
Q 010390 63 KNSHIFAV-SDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-------VAHQNAIFDLCWIKEDTNILTASGD----- 129 (512)
Q Consensus 63 ~~~~~lat-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~V~~l~~s~~~~~l~s~~~d----- 129 (512)
+++++|++ |..++.|.|+|+.+..... +....+ +.....-..+..+|+| .++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p---------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREP---------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG 162 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSC---------EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCc---------eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence 77876655 5678899999986432111 111211 1111245667888999 77766555
Q ss_pred -CcEEEEeCCCCeeeecccCcCC---CEEEEEeeCCCCCeEEEEe-------------------CCCcEEEEeCCCCCCC
Q 010390 130 -QTIKIWDAEKKKCTGALMGHTG---SIKSLCSHPTNSDILVSGS-------------------RDGSFAIWDLRCKSSP 186 (512)
Q Consensus 130 -g~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~-------------------~dg~i~vwd~~~~~~~ 186 (512)
|.|.+.|..+.+.+.++..... .-..+-|+|++ +.+++.. .+.+|.+||+.+.+..
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 7899999999999888863222 23457789988 7777774 3679999999864322
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEE--eecCCEEEEEee-----cCCeEEEEeccCccceecc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY--LKDEVSIATASA-----VNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~g~-----~dg~i~iwd~~~~~~~~~~ 259 (512)
... ...........+.| +|+++++++++. .+++|.+|..+.+......
T Consensus 242 ~tI-------------------------~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 242 HSL-------------------------TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp EEE-------------------------ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred eEE-------------------------ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 111 00001123445555 999999998887 7888988776543221111
Q ss_pred c--CCCcc---cc----ccccccccCeeEEEeCCCCCEEEEEec-CCeEEEEEcccCCC-CceEeeeec-----------
Q 010390 260 A--WPHAE---SS----SAKETRLHGISSLSQDSNGVFLTASCM-DHRIYLYNVLQLDK-GPIQHFSGC----------- 317 (512)
Q Consensus 260 ~--~~~~~---~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~-~~~~~~~~~----------- 317 (512)
. .+... .. ..+.........+.+++||++|+++.. .+.|.+||+..... ..+..+...
T Consensus 297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence 0 00000 00 000011245788999999999998885 58999999864321 222222211
Q ss_pred -eeceeEEEEEECCCCCEEEEec
Q 010390 318 -RIESFYVKSEICPNASHILSGS 339 (512)
Q Consensus 318 -~~~~~~~~~~~s~~~~~l~~g~ 339 (512)
........++++|||++|+++.
T Consensus 377 ~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccCCCCCCEEEEcCCCCEEEEEc
Confidence 0001234589999999998876
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.13 E-value=1.7e-09 Score=100.26 Aligned_cols=245 Identities=8% Similarity=-0.026 Sum_probs=147.3
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeC-----CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDE-----DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
+|-..+.+|++ +++|+++++... ++.|.+||..+++...... .-.....+...+..+++++++..
T Consensus 64 ~~~~~p~gv~~---d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~-------~~~~~~~~~~~~~~v~vd~~~g~ 133 (343)
T 2qe8_A 64 ITFDTVLGIKS---DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIY-------LPPPITLSNSFVNDLAVDLIHNF 133 (343)
T ss_dssp CCCSCEEEEEE---CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEE-------CCTTTSCTTCCCCEEEEETTTTE
T ss_pred cceeEeeEEEE---cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEE-------CChhhcccccccceEEEecCCCE
Confidence 45667888888 999987766533 5789999987664210000 00001123346789999986545
Q ss_pred E-EEEe---CCCcEEEEeCCCCeeeecccCcCCCEE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 123 I-LTAS---GDQTIKIWDAEKKKCTGALMGHTGSIK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 123 l-~s~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
+ ++.. .++.|.+||+.+++..+.+.+|..... ...+.+++ ..+.+.+.++.++.|..
T Consensus 134 ~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~~----------------- 195 (343)
T 2qe8_A 134 VYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPHL----------------- 195 (343)
T ss_dssp EEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETT-EECBEECTTSCEECCCC-----------------
T ss_pred EEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECC-EEEEeccCCCceeceec-----------------
Confidence 4 4544 578999999998887776655432110 13344455 56666777777766642
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
.+..++++|+++.++++......+..++........ .............++....
T Consensus 196 ------------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~g~p 250 (343)
T 2qe8_A 196 ------------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ-LTDAELGSKIERYSEKPIC 250 (343)
T ss_dssp ------------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT-CCHHHHHTTCEEEEECCSC
T ss_pred ------------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC-CChhhhhcceEecccCCCC
Confidence 367899999999888866544566666543211000 0000000000111233356
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~ 348 (512)
..++++++|.++++...++.|.+||..+++ +..+...........+++.++++++++.+..+.+.+|.
T Consensus 251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~---~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 251 DGISIDKDHNIYVGDLAHSAIGVITSADRA---YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp SCEEECTTCCEEEEEGGGTEEEEEETTTTE---EEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ceEEECCCCCEEEEccCCCeEEEEECCCCC---EEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 789999999988888889999999973322 22222222234567899999988887776555444443
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.10 E-value=1.3e-08 Score=95.63 Aligned_cols=289 Identities=6% Similarity=-0.015 Sum_probs=158.6
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
++..+++++.++.|..+|.++++..-....... ..........+.+.- ..++..++.++.++.|..+|..+++.+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEK----DGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-------CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccc----cccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence 456777888899999999987754211000000 000000012232222 124567888889999999999999887
Q ss_pred ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223 (512)
Q Consensus 144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (512)
................ + ..++.++.++.|..+|..+++.......... .......
T Consensus 127 W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~------------------~~~~~~~---- 181 (376)
T 3q7m_A 127 WQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMP------------------SLSLRGE---- 181 (376)
T ss_dssp EEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----------------------CCC----
T ss_pred EEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCC------------------ceeecCC----
Confidence 7665433221122222 3 5788888899999999987764332111000 0000000
Q ss_pred EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC--CCCEEEEEecCCeEEEE
Q 010390 224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS--NGVFLTASCMDHRIYLY 301 (512)
Q Consensus 224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~ 301 (512)
...... +..+++ +..++.|..+|..+++................ ..+..+...| .+..+++++.++.+..+
T Consensus 182 ~~~~~~--~~~v~~-g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 182 SAPTTA--FGAAVV-GGDNGRVSAVLMEQGQMIWQQRISQATGSTEI----DRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp CCCEEE--TTEEEE-CCTTTEEEEEETTTCCEEEEEECCC---------------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred CCcEEE--CCEEEE-EcCCCEEEEEECCCCcEEEEEecccCCCCccc----ccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 111111 334444 55789999999998887665432211000000 0000000111 24567778889999999
Q ss_pred EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec-cccCCeEEEEeCCCCCCeEE
Q 010390 302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK-SHDGEVTAVNWCPNEAGKIV 380 (512)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~ 380 (512)
|..+++. +....... ...+.. ++..|+.++.++.|..+|..+++.. .... .....+...... + ..|+
T Consensus 255 d~~tG~~--~w~~~~~~----~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~~~~~~~~~~~~~~--~-~~l~ 322 (376)
T 3q7m_A 255 DLRSGQI--MWKRELGS----VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL-WTQSDLLHRLLTSPVLY--N-GNLV 322 (376)
T ss_dssp ETTTCCE--EEEECCCC----EEEEEE--ETTEEEEEETTCCEEEEETTTCCEE-EEECTTTTSCCCCCEEE--T-TEEE
T ss_pred ECCCCcE--EeeccCCC----CCCceE--ECCEEEEEcCCCeEEEEECCCCcEE-EeecccCCCcccCCEEE--C-CEEE
Confidence 9866432 21111111 122222 3667777888899999999888653 2222 112222222232 3 5788
Q ss_pred EEeCCCcEEEEeCCCCccccc
Q 010390 381 TSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 381 s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.++.+|.|.++|..+++.+..
T Consensus 323 v~~~~g~l~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 323 VGDSEGYLHWINVEDGRFVAQ 343 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEE
Confidence 899999999999999987654
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.08 E-value=2.3e-09 Score=98.93 Aligned_cols=260 Identities=13% Similarity=0.029 Sum_probs=153.4
Q ss_pred eEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceeccccC-------CCcEEEEEEe
Q 010390 55 AVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-------QNAIFDLCWI 117 (512)
Q Consensus 55 ~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~s 117 (512)
.+.+ +|||++++++. .++.|.+||..+.+. +.++... ......++++
T Consensus 69 ~i~~---spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-------------v~~I~v~~~~~~~~g~~P~~ia~S 132 (368)
T 1mda_H 69 LAVA---GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-------------IADIELPDAPRFSVGPRVHIIGNC 132 (368)
T ss_dssp EEEE---CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-------------EEEEEETTSCSCCBSCCTTSEEEC
T ss_pred ceEE---CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-------------EEEEECCCccccccCCCcceEEEc
Confidence 7888 99999888886 368899999988754 3333211 1234578999
Q ss_pred cCCCEEEEEeC--CCcEEE--EeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC-----CCCCCC
Q 010390 118 KEDTNILTASG--DQTIKI--WDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC-----KSSPKS 188 (512)
Q Consensus 118 ~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~ 188 (512)
|||++|+.+.. +..|.+ +|+.+ +..+... +. +.+.|++...+++.+.||.+.+.|+.+ ++....
T Consensus 133 pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~ 205 (368)
T 1mda_H 133 ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence 99999998875 467888 99877 3334211 11 224566667777888899998888875 221110
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc-
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS- 267 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 267 (512)
.. ........+. . .+++..++.+. . +.|.+.|+.................
T Consensus 206 ~t-----------------------~~i~vg~~P~---~-~~~~~~~~~vs-~-~~V~viD~~~~~~~v~~~~~~~~~~~ 256 (368)
T 1mda_H 206 CT-----------------------GAQNCSSQAA---Q-ANYPGMLVWAV-A-SSILQGDIPAAGATMKAAIDGNESGR 256 (368)
T ss_dssp SC-----------------------TTSCBCSCCE---E-ETTTTEEEECB-S-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred ee-----------------------eeeeCCCCcc---c-cccCCEEEEEc-C-CEEEEEECCCCcceEEEEEEeccccc
Confidence 00 0001112232 2 56666666655 4 8999999875432211111000000
Q ss_pred ccccccccCeeEEEeCCCCCEEEEEec-C--------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE-EEE
Q 010390 268 SAKETRLHGISSLSQDSNGVFLTASCM-D--------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH-ILS 337 (512)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~ 337 (512)
............++++++++.++++.. . +.+.++|+.+.+ .+..+... .....++|+|||++ +++
T Consensus 257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--vv~~i~vg---~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPISNG---HDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECCEEE---EEECEEEECCSSSCEEEE
T ss_pred cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--EEEEEECC---CCcceEEECCCCCEEEEE
Confidence 000011122333789999998887643 2 356699987643 23333222 23556999999984 555
Q ss_pred ec-CCCCEEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390 338 GS-SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP 373 (512)
Q Consensus 338 g~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~ 373 (512)
.. .++.|.++|+.+.+.. ..+... .....+++.+
T Consensus 332 ~~~~~~~VsVID~~t~kvv-~~I~vg-~~P~~i~~~~ 366 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQ-SSVELD-KGPESLSVQN 366 (368)
T ss_dssp EETTTTEEEEEESSSCEEE-EECCCC-SCCCEEECCC
T ss_pred ccCCCCeEEEEECCCCcEE-EEEECC-CCCCEEEeec
Confidence 55 5899999999987653 333322 2344555543
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.07 E-value=9.2e-08 Score=85.08 Aligned_cols=257 Identities=9% Similarity=0.007 Sum_probs=149.8
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCeee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT-ASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~ 143 (512)
|.+|..+.. +.|+.++++...... .+. ...+......+..++|++++..|+. -..++.|.++++......
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~------~~~--~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~ 71 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKK------TEA--KAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT 71 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCG------GGC--EEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE
T ss_pred CcEEEEEcC-CeEEEEEecCccccc------ccc--eeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE
Confidence 345555553 478889887643210 000 0011112245789999997666664 445789999998766443
Q ss_pred ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223 (512)
Q Consensus 144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (512)
..+.........+++.++++.++++-...+.|.++++....... .........
T Consensus 72 ~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~---------------------------~~~~~~~~P 124 (267)
T 1npe_A 72 TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV---------------------------LFDTGLVNP 124 (267)
T ss_dssp EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---------------------------EECSSCSSE
T ss_pred EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE---------------------------EEECCCCCc
Confidence 33332234678999999764666666667899999986432100 000111356
Q ss_pred EEEEEeecCCEEEEEeec--CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEE
Q 010390 224 TSVLYLKDEVSIATASAV--NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYL 300 (512)
Q Consensus 224 ~~~~~~~~~~~l~~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i 300 (512)
..++++|++..++++... .+.|..+++........ ..........+++++++..|+.+. ..+.|.+
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~-----------~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~ 193 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL-----------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE-----------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE-----------EECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence 889999977777665533 46888888764322110 011123578899999877666555 5689999
Q ss_pred EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc-cCCeEEEEeCCCC
Q 010390 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH-DGEVTAVNWCPNE 375 (512)
Q Consensus 301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~v~~~~~~ 375 (512)
+|...... ...... ......++.. .+.++++....+.|.++|..+++.. ..+... ......+++.|++
T Consensus 194 ~~~~g~~~--~~~~~~---~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~-~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 194 LNPAQPGR--RKVLEG---LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EETTEEEE--EEEEEC---CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE-EEECCSSCCCCCCEEEECSC
T ss_pred EecCCCce--EEEecC---CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce-EEEccccccccceeeecCcc
Confidence 99854221 111111 1122345554 3444455555688999998876653 333322 2246677777765
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.05 E-value=4.4e-09 Score=106.52 Aligned_cols=325 Identities=9% Similarity=0.010 Sum_probs=170.5
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcE-EEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAI-FDLCWIKEDTNILTASGDQTIKIWDAEKKKC 142 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 142 (512)
+..+++++.++.|.-+|..+++..-....... ........ ..+ ..+.. ++..|+.++.|+.|..+|..+|+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSD----RHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCC----GGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCC----ccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCE
Confidence 55677777788999999988754221100000 00000000 000 11222 356788888999999999999998
Q ss_pred eecccCc--CCCEEEEEeeC--CCCCeEEEEe------CCCcEEEEeCCCCCCCCCccccc----eeeecc-cccccccc
Q 010390 143 TGALMGH--TGSIKSLCSHP--TNSDILVSGS------RDGSFAIWDLRCKSSPKSNCAES----FVFSSA-VVKGAHLL 207 (512)
Q Consensus 143 ~~~~~~h--~~~v~~l~~~~--~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~ 207 (512)
+..+... ......+...| .+ ..++.++ .+|.|..||..+++..-...... ...... ........
T Consensus 144 ~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 144 AWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 8766532 11111111111 12 3444443 36899999999887654321100 000000 00000000
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCC-------------------eEEEEeccCccceecccCCCccccc
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS-------------------IVKFWDTRNLKAQITQAWPHAESSS 268 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~ 268 (512)
..........+......+++.++...+++ +..++ .|..+|.++++........+...-
T Consensus 223 -~g~~w~~~~~g~~~w~~~~~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w- 299 (689)
T 1yiq_A 223 -FGDAYVEQGGGGTAWDSFAYDPELNLLYI-GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW- 299 (689)
T ss_dssp -CSSTHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS-
T ss_pred -CCceeeecCCCCccccceeEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc-
Confidence 00000000011122236788888777776 43454 499999999998876532211000
Q ss_pred cccccccCeeEEEeCCCCC---EEEEEecCCeEEEEEcccCCCCceEeeee-----c-------------------eece
Q 010390 269 AKETRLHGISSLSQDSNGV---FLTASCMDHRIYLYNVLQLDKGPIQHFSG-----C-------------------RIES 321 (512)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~-------------------~~~~ 321 (512)
.. .....+.......+|+ .++.++.+|.++++|..+++......+.. . ....
T Consensus 300 d~-~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~ 378 (689)
T 1yiq_A 300 DY-TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR 378 (689)
T ss_dssp CC-CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred cc-cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence 00 0011111122222554 78889999999999987654321000000 0 0000
Q ss_pred -----------eEEEEEECCCCCEEEEecC---------------------------------------------CCCEE
Q 010390 322 -----------FYVKSEICPNASHILSGSS---------------------------------------------DGNAY 345 (512)
Q Consensus 322 -----------~~~~~~~s~~~~~l~~g~~---------------------------------------------dg~i~ 345 (512)
....++|+|+..++++... +|.|+
T Consensus 379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~ 458 (689)
T 1yiq_A 379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI 458 (689)
T ss_dssp EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence 0112678888777776422 37799
Q ss_pred EEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 346 VWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 346 iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
.||+.+++.. .....+ .++....+...+ .+++.++.||.|+.||.++|+.+-.+.
T Consensus 459 A~D~~tG~~~-W~~~~~-~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 459 AWDPVKQQAA-WEVPYV-TIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp EEETTTTEEE-EEEEES-SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCeE-eEccCC-CCccCccceECC-CEEEEECCCCcEEEEECCCCccceeee
Confidence 9999888763 233222 233333455556 689999999999999999999886543
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=2.3e-09 Score=108.28 Aligned_cols=324 Identities=9% Similarity=-0.021 Sum_probs=175.0
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG 144 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 144 (512)
+..|++++.++.|.-+|..+++..-......... .............+.+ ++..|+.++.|+.|..+|..+|+.+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~--~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRS--TGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGG--GGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcc--ccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 4556666678899999988775421110000000 0000000000012233 45678888899999999999999887
Q ss_pred cccCc-C----CCEEE-EEeeCCCCCeEEEEeC------CCcEEEEeCCCCCCCCCccccceeeeccc-c----cccccc
Q 010390 145 ALMGH-T----GSIKS-LCSHPTNSDILVSGSR------DGSFAIWDLRCKSSPKSNCAESFVFSSAV-V----KGAHLL 207 (512)
Q Consensus 145 ~~~~h-~----~~v~~-l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~ 207 (512)
.+..+ . ..+.+ .... + ..++.++. ++.|+.+|..+++................ . .+....
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~--~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVF--K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eecCCcCcCcCcccccCcEEE--C-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 77644 1 11211 1111 3 34555443 68999999998876543211100000000 0 000000
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCC-------------------eEEEEeccCccceecccCCCccccc
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS-------------------IVKFWDTRNLKAQITQAWPHAESSS 268 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~ 268 (512)
..................+++++++..+++.. .++ .|..+|.++++............-
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~-~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w- 307 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGT-GNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW- 307 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEEC-CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS-
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEEC-CCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc-
Confidence 00000000001222334678888888777643 342 599999999988776432211000
Q ss_pred cccccccCeeEEEeCCCC---CEEEEEecCCeEEEEEcccCCCCceEeeeecee---------cee--------------
Q 010390 269 AKETRLHGISSLSQDSNG---VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI---------ESF-------------- 322 (512)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~-------------- 322 (512)
.... ......+....+| ..++.++.+|.++++|..+++. +........ ...
T Consensus 308 d~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 308 DYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF--ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp CCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred cccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE--eccccccccCcccccCCCCceeeccccCcCCCccE
Confidence 0000 1112222333467 6788999999999999876543 211110000 000
Q ss_pred ----------EEEEEECCCCCEEEEecC-------------------------------------------CCCEEEEec
Q 010390 323 ----------YVKSEICPNASHILSGSS-------------------------------------------DGNAYVWQV 349 (512)
Q Consensus 323 ----------~~~~~~s~~~~~l~~g~~-------------------------------------------dg~i~iw~~ 349 (512)
...++++|++.++++... .|.|..||+
T Consensus 385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~ 464 (677)
T 1kb0_A 385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP 464 (677)
T ss_dssp CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence 013678898888876532 267999999
Q ss_pred CCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 350 NKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 350 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
.+++... .. .+..++....+..++ .+++.++.||.+++||..+++.+..+.
T Consensus 465 ~tG~~~W-~~-~~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 465 VAQKAAW-SV-EHVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp TTTEEEE-EE-EESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCcEEe-ec-CCCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCceeeeee
Confidence 8887632 22 233444455566666 688889999999999999999887654
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=1e-08 Score=103.65 Aligned_cols=294 Identities=11% Similarity=0.061 Sum_probs=163.8
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC-C----CcEEEEEEecCCCEEEEEeC------CCcE
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-Q----NAIFDLCWIKEDTNILTASG------DQTI 132 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~----~~V~~l~~s~~~~~l~s~~~------dg~i 132 (512)
++..|++++.|+.|..+|..+++..- .+..+ . ..+.+--.. .+..++.++. ++.|
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W-------------~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v 192 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVW-------------HQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYI 192 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEE-------------EEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEe-------------eecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEE
Confidence 45678888889999999998875421 11111 0 111110001 2345555443 6899
Q ss_pred EEEeCCCCeeeecccCcCC--------------------------------CEEEEEeeCCCCCeEEEEeCCC-------
Q 010390 133 KIWDAEKKKCTGALMGHTG--------------------------------SIKSLCSHPTNSDILVSGSRDG------- 173 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~h~~--------------------------------~v~~l~~~~~~~~~l~s~~~dg------- 173 (512)
+.+|..+|+.+..+..... ....+++.|++ .+++.+..++
T Consensus 193 ~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~ 271 (677)
T 1kb0_A 193 TAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKV 271 (677)
T ss_dssp EEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHH
T ss_pred EEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCC
Confidence 9999999998766543211 11246788877 6777776654
Q ss_pred ------------cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC--EEEEEe
Q 010390 174 ------------SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV--SIATAS 239 (512)
Q Consensus 174 ------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~g 239 (512)
.|..+|..+++......... . ....... .....-+....+|+ .+++.+
T Consensus 272 ~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~---------~--------d~wd~~~-~~~p~l~~~~~dG~~~~~l~~~ 333 (677)
T 1kb0_A 272 RSPKGGDNLYLASIVALDPDTGKYKWHYQETP---------G--------DNWDYTS-TQPMILADIKIAGKPRKVILHA 333 (677)
T ss_dssp HSTTCCCCTTTTEEEEECTTTCCEEEEEESST---------T--------CCSCCCC-CSCCEEEEEEETTEEEEEEEEC
T ss_pred CCccCCCCeeeEEEEEEECCCCCEEEEEecCC---------C--------ccccccc-CCCcEEEecccCCcEeeEEEEE
Confidence 48888888776433211100 0 0000000 11222223334663 444457
Q ss_pred ecCCeEEEEeccCccceecccCCCcccccccc--------------c--------cc--cCeeEEEeCCCCCEEEEEecC
Q 010390 240 AVNSIVKFWDTRNLKAQITQAWPHAESSSAKE--------------T--------RL--HGISSLSQDSNGVFLTASCMD 295 (512)
Q Consensus 240 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------------~--------~~--~~i~~~~~~~~~~~l~~~~~d 295 (512)
+.+|.|+++|..+++.+............... . .. ..-..++++|+..++++...+
T Consensus 334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~ 413 (677)
T 1kb0_A 334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQN 413 (677)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChh
Confidence 78999999999999877554322110000000 0 00 001257889988888776432
Q ss_pred -------------------------------------------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390 296 -------------------------------------------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332 (512)
Q Consensus 296 -------------------------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 332 (512)
|.|..||+.+++. +-..... .......+...+
T Consensus 414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~---~~~~~g~~~~~g 488 (677)
T 1kb0_A 414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA--AWSVEHV---SPWNGGTLTTAG 488 (677)
T ss_dssp CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE--EEEEEES---SSCCCCEEEETT
T ss_pred cceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE--EeecCCC---CCCcCcceEeCC
Confidence 6788999866432 2222111 111123345677
Q ss_pred CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC----------------CCcEEEEeCCC
Q 010390 333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD----------------DYTVRLWSLEN 395 (512)
Q Consensus 333 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~----------------dg~i~vwd~~~ 395 (512)
..++.++.||.+++||..+++.......++...-.-+.|..+|..+++..+. .+.+.+|.+..
T Consensus 489 ~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 489 NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 8888899999999999999887433333443333445566777445554332 36777787764
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.00 E-value=2.8e-10 Score=106.44 Aligned_cols=223 Identities=10% Similarity=0.012 Sum_probs=118.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
++..|++++.||.|+.||..+|+.+..+.. +.+.+..+..++ ..+++++.||.|+.||..+++..........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~---- 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP---- 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHH----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCc----
Confidence 577899999999999999999999888775 455554455555 6788888999999999987765432211000
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
.. ....++. . .+..+++ ++.++.|+.||.++++....... +.
T Consensus 81 ----------------~~-~~~sp~~----~-~~~~v~~-g~~dg~v~a~D~~tG~~~w~~~~-----------~~---- 122 (369)
T 2hz6_A 81 ----------------EL-VQASPCR----S-SDGILYM-GKKQDIWYVIDLLTGEKQQTLSS-----------AF---- 122 (369)
T ss_dssp ----------------HH-HTTCSCC----------CCC-CEEEEEEEEECCC---------------------------
T ss_pred ----------------cc-cccCceE----e-cCCEEEE-EeCCCEEEEEECCCCcEEEEecC-----------CC----
Confidence 00 0000110 1 2233443 55789999999999887654321 11
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC---CEEEEecCCCCEEEEecCCCCCC
Q 010390 279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA---SHILSGSSDGNAYVWQVNKPQAD 355 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~g~~dg~i~iw~~~~~~~~ 355 (512)
...++|++..+++++.++.|+.||..+++..-....... ...+++.+. ..+++++.||.|+.||..+++..
T Consensus 123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSSSCCCEEEEEEE------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc------cCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 133456788899999999999999877554322222111 112333432 56777888999999999988753
Q ss_pred CceeccccCCeEE-EEeCCCCCCeE----EEEeCCCcEEEEeCCCCc
Q 010390 356 PIKLKSHDGEVTA-VNWCPNEAGKI----VTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 356 ~~~~~~h~~~v~~-v~~~~~~~~~l----~s~~~dg~i~vwd~~~~~ 397 (512)
.... ...++.. ..+++++ ... +.+ ++.++.+|..+|+
T Consensus 197 -W~~~-~~~pv~~~~~~~~dg-~~~v~~~~~~--~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 197 -WIQN-YASPVVAFYVWQREG-LRKVMHINVA--VETLRYLTFMSGE 238 (369)
T ss_dssp -EEEE-CSSCEEEEEECTTSS-CEEECCEEEE--HHHHHHHHHHHHH
T ss_pred -EEec-CCCceEEEEEecCCc-eEeccceeec--ccceeeeehhcCC
Confidence 3333 3344443 4455665 321 112 4456677776665
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.97 E-value=2.4e-08 Score=101.08 Aligned_cols=287 Identities=9% Similarity=0.073 Sum_probs=154.6
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe------CCCcEEEEeC
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS------GDQTIKIWDA 137 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~------~dg~i~iwd~ 137 (512)
++..|++++.||.|..+|.++++..-..... ... .........++. .++ .++.++ .+|.|+.||.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~-~~~--~~~~~~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~ 190 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTR-ADH--KRSYTITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDA 190 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECC-SCT--TSCCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEET
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCc-CCC--CCCccccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEEC
Confidence 3567888889999999999888642111000 000 000000111111 144 444443 3789999999
Q ss_pred CCCeeeecccCc-------------------------------CCCEEEEEeeCCCCCeEEEEeCCCc------------
Q 010390 138 EKKKCTGALMGH-------------------------------TGSIKSLCSHPTNSDILVSGSRDGS------------ 174 (512)
Q Consensus 138 ~~~~~~~~~~~h-------------------------------~~~v~~l~~~~~~~~~l~s~~~dg~------------ 174 (512)
.+|+.+..+... ......+++.|+. .+++.+..++.
T Consensus 191 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~g 269 (689)
T 1yiq_A 191 ETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKG 269 (689)
T ss_dssp TTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCS
T ss_pred CCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCC
Confidence 999987665421 0011256788877 77888877763
Q ss_pred -------EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC--EEEEEeecCCeE
Q 010390 175 -------FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV--SIATASAVNSIV 245 (512)
Q Consensus 175 -------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~g~~dg~i 245 (512)
|..+|..+++..-...... + ..... .....+.......++. .+++.++.+|.+
T Consensus 270 d~~y~~~v~AlD~~TG~~~W~~~~~~-----------~------d~wd~-~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l 331 (689)
T 1yiq_A 270 DNLFLSSIVAVNADTGEYVWHYQTTP-----------G------DAWDY-TATQHMILAELPIDGKPRKVLMQAPKNGFF 331 (689)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESST-----------T------CCSCC-CCCSCEEEEEEEETTEEEEEEEECCTTSEE
T ss_pred CceeeeeEEEEEccCCceeEeeecCC-----------c------ccccc-cCCCCcEEEeeccCCcEEEEEEEECCCCeE
Confidence 8889988876543221100 0 00000 0011122222223443 244457789999
Q ss_pred EEEeccCccceecccCCCcccccc-----------------cccc-----------ccCeeEEEeCCCCCEEEEEec---
Q 010390 246 KFWDTRNLKAQITQAWPHAESSSA-----------------KETR-----------LHGISSLSQDSNGVFLTASCM--- 294 (512)
Q Consensus 246 ~iwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~-----------~~~i~~~~~~~~~~~l~~~~~--- 294 (512)
+++|.++++.+.........-... .... ...-..++++|+..++++...
T Consensus 332 ~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~ 411 (689)
T 1yiq_A 332 YVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMS 411 (689)
T ss_dssp EEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECC
T ss_pred EEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccc
Confidence 999999998764322111000000 0000 001223788888887776532
Q ss_pred ------------------------------------------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390 295 ------------------------------------------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332 (512)
Q Consensus 295 ------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 332 (512)
+|.|..||+.+++. +-...... ......+...+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~~---~~~~g~~~tag 486 (689)
T 1yiq_A 412 AYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPYVT---IFNGGTLSTAG 486 (689)
T ss_dssp EEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE--EEEEEESS---SCCCCEEEETT
T ss_pred eeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe--EeEccCCC---CccCccceECC
Confidence 36788888866432 22222111 11112344577
Q ss_pred CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe
Q 010390 333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS 383 (512)
Q Consensus 333 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 383 (512)
.+++.|+.||.++.||.++++.......++.....-+.|..+|.+++++.+
T Consensus 487 glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 487 NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 889999999999999999998743222233322344667778855666543
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.94 E-value=1.7e-10 Score=107.96 Aligned_cols=258 Identities=10% Similarity=-0.017 Sum_probs=130.6
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
++..+++++.||.|+.||..+++. +-++.. +.+.+..+..++..+++++.||.|+.||..+++.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-------------~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-------------KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-------------EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-------------EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence 678899999999999999988754 222222 34444445567778888889999999999999876
Q ss_pred ecccCcCC-CEE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390 144 GALMGHTG-SIK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM 221 (512)
Q Consensus 144 ~~~~~h~~-~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (512)
..+..+.. .+. +..+. .+ ..+++++.|+.|+.||..+++....... +.
T Consensus 73 w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~---------------------------~~- 122 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSS---------------------------AF- 122 (369)
T ss_dssp EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred eeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecC---------------------------CC-
Confidence 65543321 110 00111 23 5677888899999999998876543211 00
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC---CEEEEEecCCeE
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG---VFLTASCMDHRI 298 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i 298 (512)
...++|++..+++ ++.++.|+.||.++++...... .. ......+..+. ..+++++.+|.|
T Consensus 123 ---~~~~~p~~~~v~~-~~~dg~v~a~d~~tG~~~W~~~---------~~----~~~~~~~~~~~~~~~~v~~~~~dg~v 185 (369)
T 2hz6_A 123 ---ADSLSPSTSLLYL-GRTEYTITMYDTKTRELRWNAT---------YF----DYAASLPEDDVDYKMSHFVSNGDGLV 185 (369)
T ss_dssp -------------EEE-EEEEEEEECCCSSSSSCCCEEE---------EE----EECCBCCCCCTTCCCCEEEEETSCEE
T ss_pred ---cccccccCCEEEE-EecCCEEEEEECCCCCEEEeEe---------cc----cccCccccCCccccceEEEECCCCEE
Confidence 1233456666665 4578999999999987655421 00 11223333332 457778899999
Q ss_pred EEEEcccCCCCceEeeeeceeceeEE-EEEECCCCCEE----EEecCCCCEEEEecCCCC----CCCceeccccCCeEEE
Q 010390 299 YLYNVLQLDKGPIQHFSGCRIESFYV-KSEICPNASHI----LSGSSDGNAYVWQVNKPQ----ADPIKLKSHDGEVTAV 369 (512)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l----~~g~~dg~i~iw~~~~~~----~~~~~~~~h~~~v~~v 369 (512)
+.||..+++. +-... ....+. ...+++++... +.+ ++.++.+|..+++ .....-.+ +.+.+.
T Consensus 186 ~a~d~~tG~~--~W~~~---~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~--~~~~sp 256 (369)
T 2hz6_A 186 VTVDSESGDV--LWIQN---YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFP--KETEAK 256 (369)
T ss_dssp EEECTTTCCE--EEEEE---CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC--CHHHHH
T ss_pred EEEECCCCcE--EEEec---CCCceEEEEEecCCceEeccceeec--ccceeeeehhcCCcccceeeeeccC--cccccc
Confidence 9999876432 22221 111222 23444555321 111 2335555554443 21111111 111111
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 370 NWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 370 ~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
.. .+ ..|+.++.||.++..+...
T Consensus 257 ~~--~~-g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 257 SK--LT-PTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp HH--SE-EEECBEECSSCEECCEEEE
T ss_pred cc--cc-ceEEEecccCCEEecCccc
Confidence 11 22 4788888999999998764
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=3.8e-08 Score=94.60 Aligned_cols=276 Identities=11% Similarity=0.039 Sum_probs=155.9
Q ss_pred cCCCcEEEEeeC-CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE-e-cCCCEEEEEe-----------
Q 010390 62 SKNSHIFAVSDE-DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW-I-KEDTNILTAS----------- 127 (512)
Q Consensus 62 s~~~~~latg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-s-~~~~~l~s~~----------- 127 (512)
.+||++|.+... ++.|.+.|+.+.+.. .+..+. .......+++ + |++.++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~-----------~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCD-----------AILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEE-----------EEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEe-----------eEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 348888887755 456999999876431 111222 2245788888 4 8999998885
Q ss_pred -------CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC---------------cEEEEeCCCCCC
Q 010390 128 -------GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG---------------SFAIWDLRCKSS 185 (512)
Q Consensus 128 -------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---------------~i~vwd~~~~~~ 185 (512)
.++.+.++|.++.+...++.--. ....++++|++ .++++.+.+. .|.+.|......
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 24679999999998888776322 34567899988 6777666542 355555432110
Q ss_pred CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390 186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 265 (512)
.........+........... ..........-.....++.++|||+++++++..+..|.++|+.+.+....-......
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~--~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKE--ASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGG--GCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred eccCCCeeEECcEEEEeCccc--CCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 000000000000000000000 000101112223466789999999999999988999999999976421100000000
Q ss_pred ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC--------CCceEeeeecee---ceeEEEEEECCCCCE
Q 010390 266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD--------KGPIQHFSGCRI---ESFYVKSEICPNASH 334 (512)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~---~~~~~~~~~s~~~~~ 334 (512)
.......-......++|+++|...++...|+.|.+||+.... ...+..+.-+.. ........++|||++
T Consensus 322 ~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~ 401 (595)
T 1fwx_A 322 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW 401 (595)
T ss_dssp GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred ceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence 000112223457889999999444456689999999986521 223333332211 111112356799999
Q ss_pred EEEecC---CCC----------EEEEecCCCC
Q 010390 335 ILSGSS---DGN----------AYVWQVNKPQ 353 (512)
Q Consensus 335 l~~g~~---dg~----------i~iw~~~~~~ 353 (512)
|++... |.. -.++|+..++
T Consensus 402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 988643 332 1889995544
No 236
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.90 E-value=4.7e-06 Score=86.47 Aligned_cols=292 Identities=11% Similarity=0.082 Sum_probs=172.0
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI 132 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 132 (512)
|.++.. .++|.+.+ |+.++-|..||..++... ... ...+...|.++...+++.+.+ |+.++-|
T Consensus 175 i~~i~~---d~~g~lwi-gt~~~Gl~~~~~~~~~~~-----------~~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl 237 (795)
T 4a2l_A 175 IASTLY---RQGDQIYI-GTSTDGLYTYSITQKTFE-----------KVI-PILGTKQIQAILQQSPTRIWV-ATEGAGL 237 (795)
T ss_dssp CEEEEE---EETTEEEE-EESSSCEEEEETTTCCEE-----------ECC-----CCCEEEEEEEETTEEEE-EEBSSCE
T ss_pred eEEEEE---CCCCCEEE-EECCCCEEEEeCCCCeEE-----------Eec-CCCCCCeeEEEEEcCCCCEEE-EECCCCe
Confidence 556555 66776554 555555888987654321 000 012346789998887776544 5544348
Q ss_pred EEEeCCCCeeeecccC-------cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 133 KIWDAEKKKCTGALMG-------HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
.+||..+++....... ....|.++...+++ . |..|+.+ -|.+||..+.........
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~-------------- 300 (795)
T 4a2l_A 238 FLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSN-------------- 300 (795)
T ss_dssp EEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCC--------------
T ss_pred EEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecC--------------
Confidence 9999887754432211 23569999888766 4 4445555 588898764421110000
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (512)
...........|.++...++|...+ |+.++-|..|+..+.........+. ........|.++..+++
T Consensus 301 ------~~~~~~l~~~~i~~i~~D~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~~~~~-----~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 301 ------PVENGSLSQRSVRSIFMDSQGGMWL--GTYFGGLNYYHPIRNRFKNIRNIPY-----KNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp ------TTSTTSCSSSCEEEEEECTTSCEEE--EESSSCEEEECGGGGSSEEECCCTT-----SSSCSCSSEEEEEECTT
T ss_pred ------CCCCCCCCCCcEEEEEEeCCcCEEE--EECCCCeEEeCCCcccceEEcCCCC-----CCCCCCCeeEEEEECCC
Confidence 0000011235799999988887665 4467789999876654322111100 01112345899999988
Q ss_pred CCEEEEEecCCeEEEEEcccCCCCceEeeeec-------eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC-------RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
|. |..|+.++-|..||..... ...+... .....+.+++..++++.|..|+.++-|.+||..+++. ..
T Consensus 368 g~-lWiGt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--~~ 441 (795)
T 4a2l_A 368 KN-LWIGTNDGGLNLYNPITQR---FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--EN 441 (795)
T ss_dssp SC-EEEEESSSCEEEECTTTCC---EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--EE
T ss_pred CC-EEEEECCCCeEEEcCCCCc---EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--EE
Confidence 87 5557777788999865422 2222110 1124577788888888566677666699999876543 12
Q ss_pred ec-----cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 359 LK-----SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 359 ~~-----~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
+. .....|.++...+++ .+.+.. .+ -|.+||..+++...
T Consensus 442 ~~~~~~~l~~~~v~~i~~d~~g-~lwigt-~~-Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 442 FNQRNSQLVNENVYAILPDGEG-NLWLGT-LS-ALVRFNPEQRSFTT 485 (795)
T ss_dssp ECTTTSCCSCSCEEEEEECSSS-CEEEEE-SS-CEEEEETTTTEEEE
T ss_pred eecCCCCcCCCeeEEEEECCCC-CEEEEe-cC-ceeEEeCCCCeEEE
Confidence 21 234579999998887 544444 44 48889988776543
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.89 E-value=4.6e-08 Score=90.05 Aligned_cols=220 Identities=10% Similarity=0.025 Sum_probs=132.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
+..|..++.++.|..+|.. ++.......+...+.++...+++ .++.++.++.|..+|.. ++.....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~---------- 172 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRF---------- 172 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEE----------
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEE----------
Confidence 5567778888999999988 77666665555556666666554 46667788999999987 4321110
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
......+.++...+++..++ ++ +.|..+| .+++..... ......+.+
T Consensus 173 -----------------~~~~~~~~~~~~d~~g~l~v--~t--~~l~~~d-~~g~~~~~~-----------~~~~~~~~~ 219 (330)
T 3hxj_A 173 -----------------KTNDAITSAASIGKDGTIYF--GS--DKVYAIN-PDGTEKWNF-----------YAGYWTVTR 219 (330)
T ss_dssp -----------------ECSSCCCSCCEECTTCCEEE--ES--SSEEEEC-TTSCEEEEE-----------CCSSCCCSC
T ss_pred -----------------ecCCCceeeeEEcCCCEEEE--Ee--CEEEEEC-CCCcEEEEE-----------ccCCcceec
Confidence 01122345555666666544 32 7789999 555544332 112245778
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
+..+++|. |++++.++.|..+|.. ...+..+.... .....+.+.+++ .|..++.+|.|..+|. +++. ...+
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~~---g~~~~~~~~~~--~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~-~~~~ 290 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINPD---GTEKWRFKTGK--RIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTE-KWNF 290 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECTT---SCEEEEEECSS--CCCSCCEECTTS-CEEEECTTCEEEEECT-TSCE-EEEE
T ss_pred eEECCCCe-EEEEcCCCeEEEECCC---CCEeEEeeCCC--CccccceEcCCC-eEEEecCCCCEEEECC-CCcE-EEEE
Confidence 88888875 5556677888888742 22222222111 111224444455 5666777878999985 4433 2333
Q ss_pred ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
......+.++...+++ .|..++.+|.+++...+..+
T Consensus 291 ~~~~~~~~~~~~d~~g--~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 291 ETGSWIIATPVIDENG--TIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp ECSSCCCSCCEECTTC--CEEEECTTSCEEEEEC----
T ss_pred EcCCccccceEEcCCC--EEEEEcCCCeEEEEeccccc
Confidence 3334566777777776 57778999999998776544
No 238
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.89 E-value=1.5e-07 Score=88.51 Aligned_cols=267 Identities=10% Similarity=0.062 Sum_probs=149.1
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
++..+++++.++.|..+|.++++..- .............. .+..++.++.++.|..+|..+++.+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W-------------~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~ 166 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAW-------------QTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVK 166 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEE-------------EEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE-------------EEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 45677778889999999998775311 11111111111112 2457888888999999999999887
Q ss_pred ecccCcCCCE-----EEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc-
Q 010390 144 GALMGHTGSI-----KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK- 217 (512)
Q Consensus 144 ~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (512)
..+....... ...... + ..++.+..++.|..+|..+++.......... .+. .....+.
T Consensus 167 W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~-------~~~------~~~~~~~~ 230 (376)
T 3q7m_A 167 WTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQA-------TGS------TEIDRLSD 230 (376)
T ss_dssp EEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC------------------------C
T ss_pred EEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccC-------CCC------cccccccc
Confidence 7665332111 112222 3 5677888899999999987764322110000 000 0000000
Q ss_pred cccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCe
Q 010390 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR 297 (512)
Q Consensus 218 ~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 297 (512)
....++ . .+..+++ ++.++.+..+|..+++....... .....+.. ++..+++++.++.
T Consensus 231 ~~~~p~----~--~~~~v~~-~~~~g~l~~~d~~tG~~~w~~~~-------------~~~~~~~~--~~~~l~~~~~~g~ 288 (376)
T 3q7m_A 231 VDTTPV----V--VNGVVFA-LAYNGNLTALDLRSGQIMWKREL-------------GSVNDFIV--DGNRIYLVDQNDR 288 (376)
T ss_dssp CCCCCE----E--ETTEEEE-ECTTSCEEEEETTTCCEEEEECC-------------CCEEEEEE--ETTEEEEEETTCC
T ss_pred cCCCcE----E--ECCEEEE-EecCcEEEEEECCCCcEEeeccC-------------CCCCCceE--ECCEEEEEcCCCe
Confidence 000111 1 2344554 44689999999998887654321 11233333 3567888888999
Q ss_pred EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE-EEeCCCCC
Q 010390 298 IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA-VNWCPNEA 376 (512)
Q Consensus 298 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~ 376 (512)
|..+|..+++. +-...... ......... .+..|++++.+|.|+++|..+++.. .........+.. ... . +
T Consensus 289 l~~~d~~tG~~--~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~-~~~~~~~~~~~~~~~~-~-~- 359 (376)
T 3q7m_A 289 VMALTIDGGVT--LWTQSDLL-HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV-AQQKVDSSGFQTEPVA-A-D- 359 (376)
T ss_dssp EEEEETTTCCE--EEEECTTT-TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE-EEEECCTTCBCSCCEE-E-T-
T ss_pred EEEEECCCCcE--EEeecccC-CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE-EEEecCCCcceeCCEE-E-C-
Confidence 99999876432 22221000 000111111 2567888888999999999887753 233322222221 122 2 3
Q ss_pred CeEEEEeCCCcEEEEe
Q 010390 377 GKIVTSSDDYTVRLWS 392 (512)
Q Consensus 377 ~~l~s~~~dg~i~vwd 392 (512)
..|+.++.||.|+.|+
T Consensus 360 ~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 360 GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TEEEEEBTTSCEEEEE
T ss_pred CEEEEEeCCCEEEEEe
Confidence 5788899999999987
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.88 E-value=6.6e-07 Score=79.49 Aligned_cols=235 Identities=11% Similarity=-0.040 Sum_probs=143.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeee-----ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 121 TNILTASGDQTIKIWDAEKKKCT-----GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
.+|+.+.. +.|+.+++...... ..+......+..++|+++++.++++-..++.|..+++.......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-------- 72 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------- 72 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--------
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE--------
Confidence 34555543 46888887654321 11221224578999999764666666677899999987543210
Q ss_pred eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
...........+++++++..++++...++.|.+++......... ......
T Consensus 73 -------------------~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~-----------~~~~~~ 122 (267)
T 1npe_A 73 -------------------IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-----------FDTGLV 122 (267)
T ss_dssp -------------------EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECSSCS
T ss_pred -------------------EEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE-----------EECCCC
Confidence 00011236789999998877777776778999999875332111 111113
Q ss_pred CeeEEEeCCCCCEEEEEec---CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEecCC
Q 010390 276 GISSLSQDSNGVFLTASCM---DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQVNK 351 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~ 351 (512)
....++++|++..|+.+.. .+.|..+++.... ...+.... ......++++++++.| ++-...+.|.+++...
T Consensus 123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~-~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEECC-CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 4678999997666665554 3688888874322 11221111 1245678999987666 4555567899999875
Q ss_pred CCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 352 PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 352 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
... ...... ......++.. .+ .++++....+.|.++|..+++.+...
T Consensus 199 ~~~-~~~~~~-~~~P~gi~~d-~~-~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 199 PGR-RKVLEG-LQYPFAVTSY-GK-NLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEE-EEEEEC-CCSEEEEEEE-TT-EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred Cce-EEEecC-CCCceEEEEe-CC-EEEEEECCCCeEEEEeCCCCCceEEE
Confidence 432 122222 2334567654 33 56666667789999999988876653
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.88 E-value=4.7e-06 Score=86.53 Aligned_cols=299 Identities=7% Similarity=0.015 Sum_probs=172.7
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
..|.+|.. .++|.+.+ |+.++-|.+||..+...... .. .......-....|.++...++|...+ |+.+|
T Consensus 215 ~~i~~i~~---d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~--~~----~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G 283 (795)
T 4a2l_A 215 KQIQAILQ---QSPTRIWV-ATEGAGLFLINPKTKEIKNY--LH----SPSNPKSISSNYIRSLAMDSQNRLWI-GTFND 283 (795)
T ss_dssp CCEEEEEE---EETTEEEE-EEBSSCEEEEETTTTEEEEE--CC----CTTCTTSCSCSBEEEEEECTTSCEEE-EESSC
T ss_pred CeeEEEEE---cCCCCEEE-EECCCCeEEEeCCCCeEEEe--ec----CCCCccccCCCeEEEEEEcCCCCEEE-EeCCh
Confidence 34555555 56666554 44443488898765421000 00 00000011246799999988776444 55555
Q ss_pred cEEEEeCCCCeeeeccc-------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 131 TIKIWDAEKKKCTGALM-------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
|.+||..+++...... -....|.++...+++ .|..|+.++-|..|+............
T Consensus 284 -l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~------------ 348 (795)
T 4a2l_A 284 -LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNI------------ 348 (795)
T ss_dssp -EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCC------------
T ss_pred -hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCC------------
Confidence 8999988776443221 123579999888766 366677777888898654321110000
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc-cccccCeeEEEe
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK-ETRLHGISSLSQ 282 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 282 (512)
.. ........|.++...+++...+ |+.++-|..||..+............ .. ......|.++..
T Consensus 349 ------~~---~~~l~~~~V~~i~~d~~g~lWi--Gt~~~Gl~~~~~~~~~~~~~~~~~~~----~~~~l~~~~v~~i~~ 413 (795)
T 4a2l_A 349 ------PY---KNSLSDNVVSCIVEDKDKNLWI--GTNDGGLNLYNPITQRFTSYTLQEDE----SARGIGSNNIKAVYV 413 (795)
T ss_dssp ------TT---SSSCSCSSEEEEEECTTSCEEE--EESSSCEEEECTTTCCEEEECCC----------CCSCSCEEEEEE
T ss_pred ------CC---CCCCCCCeeEEEEECCCCCEEE--EECCCCeEEEcCCCCcEEEEecCCCC----cccCCCCccEEEEEE
Confidence 00 0011234689998888887665 54677899999876543322110000 00 112356899999
Q ss_pred CCCCCEEEEEecCCeEEEEEcccCCCCceEeeee---ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG---CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
++++..|.+|+.++-|..||..+.. ...+.. ......+.++...++|++.+... +| +.+|+..+++......
T Consensus 414 d~~g~~lWigt~~~Gl~~~d~~~~~---~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~ 488 (795)
T 4a2l_A 414 DEKKSLVYIGTHAGGLSILHRNSGQ---VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEK 488 (795)
T ss_dssp ETTTTEEEEEETTTEEEEEETTTCC---EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCB
T ss_pred cCCCCEEEEEeCcCceeEEeCCCCc---EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEccc
Confidence 9898867778887889999975432 222211 01124577788888887665544 45 8899877653211110
Q ss_pred -----ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 360 -----KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 360 -----~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
.-....|.++...+++ .+.+.. . +-|..||..+++.
T Consensus 489 ~~~~~~~~~~~i~~i~~d~~g-~lWigt-~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 489 EKDGTPVVSKQITTLFRDSHK-RLWIGG-E-EGLSVFKQEGLDI 529 (795)
T ss_dssp CTTCCBCCCCCEEEEEECTTC-CEEEEE-S-SCEEEEEEETTEE
T ss_pred cccccccCCceEEEEEECCCC-CEEEEe-C-CceEEEeCCCCeE
Confidence 1123579999999888 555444 4 4588899877665
No 241
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.87 E-value=1.2e-05 Score=72.94 Aligned_cols=240 Identities=9% Similarity=0.018 Sum_probs=137.5
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
....++++ +++|+++++-..++.|..||.+... .. ..........+++.++++++++.....
T Consensus 32 ~~pegia~---~~~g~lyv~d~~~~~I~~~d~~g~~--------------~~-~~~~~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 32 TFLENLAS---APDGTIFVTNHEVGEIVSITPDGNQ--------------QI-HATVEGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp CCEEEEEE---CTTSCEEEEETTTTEEEEECTTCCE--------------EE-EEECSSEEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEE---CCCCCEEEEeCCCCeEEEECCCCce--------------EE-EEeCCCCceeEEEcCCCcEEEEeccCC
Confidence 45678888 8999977777788999999876431 11 111235688999999998666554332
Q ss_pred --cEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 131 --TIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 131 --~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
.|..+|..+++...... ........++..+.+ ..+++-..++.|.++|...+..... ... ....
T Consensus 94 ~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~------~~~------~~~~ 160 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIW------LEH------PMLA 160 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEE------EEC------GGGS
T ss_pred cceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEE------EEC------Cccc
Confidence 46677777776532221 112234555554433 4455554578888888754210000 000 0000
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGISSLSQDSNG 286 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (512)
.. .....-.....+ ++++..++++....+.|..|++.. +..... ...........++++++|
T Consensus 161 -~~----~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~----------~~~~~~~~P~gi~vd~dG 223 (306)
T 2p4o_A 161 -RS----NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP----------EIFVEQTNIDDFAFDVEG 223 (306)
T ss_dssp -CS----STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC----------EEEEESCCCSSEEEBTTC
T ss_pred -cc----cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc----------EEEeccCCCCCeEECCCC
Confidence 00 000011134445 788888888777788999999875 221000 011111346789999999
Q ss_pred CEEEEEecCCeEEEEEcccCCCCceEeeeecee-ceeEEEEEEC---CCCCEEEEecCCC
Q 010390 287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI-ESFYVKSEIC---PNASHILSGSSDG 342 (512)
Q Consensus 287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s---~~~~~l~~g~~dg 342 (512)
+++++....+.|.++|... .......... .....+++|. ++++.|++.+..+
T Consensus 224 ~l~va~~~~~~V~~~~~~G----~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 224 NLYGATHIYNSVVRIAPDR----STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CEEEECBTTCCEEEECTTC----CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CEEEEeCCCCeEEEECCCC----CEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 8777766778999998631 1211111111 1346778998 7877776655443
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.86 E-value=2.3e-08 Score=92.05 Aligned_cols=261 Identities=11% Similarity=0.023 Sum_probs=147.1
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK 141 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 141 (512)
..+| .|.+++.++.|..|| .+++. ......+...+.++...+++. |..++.+ |..+|. +++
T Consensus 28 d~~g-~l~v~t~~~~l~~~d-~~g~~-------------~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~ 88 (330)
T 3hxj_A 28 AKNG-TIYLGSSNKNLYAIN-TDGSV-------------KWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGT 88 (330)
T ss_dssp CTTS-CEECSSTTTTTEEEC-TTSCE-------------EESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGG
T ss_pred ccCC-eEEEEcCCCEEEEEC-CCCcE-------------EEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCc
Confidence 4455 466677788899999 65532 222222334556677665664 5555544 888986 666
Q ss_pred eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390 142 CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM 221 (512)
Q Consensus 142 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (512)
.+..+...........+. + ..+..++.++.|..+|.. ++.... ......
T Consensus 89 ~~~~~~~~~~~~~~~~~~--~-~~l~v~t~~~~l~~~d~~-g~~~~~---------------------------~~~~~~ 137 (330)
T 3hxj_A 89 EKWRFDTKKAIVSDFTIF--E-DILYVTSMDGHLYAINTD-GTEKWR---------------------------FKTKKA 137 (330)
T ss_dssp GGGGSCC-----CCEEEE--T-TEEEEECTTSEEEEECTT-SCEEEE---------------------------EECSSC
T ss_pred EEEEEECCCCcccCceEE--C-CEEEEEecCCEEEEEcCC-CCEEEE---------------------------EcCCCc
Confidence 665554333333333343 3 567778888999999987 432111 001122
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 301 (512)
.+.++...+++..++ ++.++.|..+|.. ++..... ......+.++..++++.+++. + +.|..+
T Consensus 138 ~~~~~~~~~~g~l~v--gt~~~~l~~~d~~-g~~~~~~-----------~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~ 200 (330)
T 3hxj_A 138 IYATPIVSEDGTIYV--GSNDNYLYAINPD-GTEKWRF-----------KTNDAITSAASIGKDGTIYFG-S--DKVYAI 200 (330)
T ss_dssp CCSCCEECTTSCEEE--ECTTSEEEEECTT-SCEEEEE-----------ECSSCCCSCCEECTTCCEEEE-S--SSEEEE
T ss_pred eeeeeEEcCCCEEEE--EcCCCEEEEECCC-CCEeEEE-----------ecCCCceeeeEEcCCCEEEEE-e--CEEEEE
Confidence 344455555666444 4467999999988 5544332 112234667777777775544 4 788999
Q ss_pred EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEE
Q 010390 302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT 381 (512)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s 381 (512)
| .+. ......... ...+.++...++|.+ ..++.++.|..++.. +.. ...+......+.++...+++ .|..
T Consensus 201 d-~~g--~~~~~~~~~--~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~g--~l~v 270 (330)
T 3hxj_A 201 N-PDG--TEKWNFYAG--YWTVTRPAISEDGTI-YVTSLDGHLYAINPD-GTE-KWRFKTGKRIESSPVIGNTD--TIYF 270 (330)
T ss_dssp C-TTS--CEEEEECCS--SCCCSCCEECTTSCE-EEEETTTEEEEECTT-SCE-EEEEECSSCCCSCCEECTTS--CEEE
T ss_pred C-CCC--cEEEEEccC--CcceeceEECCCCeE-EEEcCCCeEEEECCC-CCE-eEEeeCCCCccccceEcCCC--eEEE
Confidence 8 332 222222211 122445667777754 445556778888743 332 22333333334445565554 6777
Q ss_pred EeCCCcEEEEeCCCCcccc
Q 010390 382 SSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 382 ~~~dg~i~vwd~~~~~~~~ 400 (512)
++.+|.|..+|. +++.+.
T Consensus 271 ~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 271 GSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp ECTTCEEEEECT-TSCEEE
T ss_pred ecCCCCEEEECC-CCcEEE
Confidence 888888999996 555433
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.85 E-value=6.3e-08 Score=93.09 Aligned_cols=242 Identities=12% Similarity=0.060 Sum_probs=143.5
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCeeeecccC-cCCCEEEEEe-e-CCCCCeEEEEe------------------CCCcEE
Q 010390 119 EDTNILTASG-DQTIKIWDAEKKKCTGALMG-HTGSIKSLCS-H-PTNSDILVSGS------------------RDGSFA 176 (512)
Q Consensus 119 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~-~-~~~~~~l~s~~------------------~dg~i~ 176 (512)
||++|..... ++.|.+.|+.+.++...+.- .......+++ . |++ .++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEE
Confidence 7888886655 56799999999998774432 2346888887 4 877 6666664 235677
Q ss_pred EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC--------------
Q 010390 177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-------------- 242 (512)
Q Consensus 177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-------------- 242 (512)
+.|..+.+...+. .- .+....++++|+++++++++...
T Consensus 179 vID~~t~~v~~qI---------------------------~V-gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 179 AVDADKWEVAWQV---------------------------LV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp EEETTTTEEEEEE---------------------------EE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred EEECCCCeEEEEE---------------------------Ee-CCCccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 7777654322211 00 01234456677777777665332
Q ss_pred C-----------------------eEEEEeccC--ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCC
Q 010390 243 S-----------------------IVKFWDTRN--LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDH 296 (512)
Q Consensus 243 g-----------------------~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg 296 (512)
. .|.+.|.++ ++... ....-.....++.++|||+++++++ .+.
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~-----------~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~ 299 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFT-----------RYIPIANNPHGCNMAPDKKHLCVAGKLSP 299 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSE-----------EEEEEESSCCCEEECTTSSEEEEECTTSS
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeE-----------EEEecCCCceEEEEcCCCCEEEEeCCCCC
Confidence 1 255555554 11100 0111223567899999999888776 678
Q ss_pred eEEEEEcccCCC------CceE-eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC---------CCCCceec
Q 010390 297 RIYLYNVLQLDK------GPIQ-HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP---------QADPIKLK 360 (512)
Q Consensus 297 ~i~i~d~~~~~~------~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~---------~~~~~~~~ 360 (512)
+|.++|+.+... .+.. .............++|+++|...++.-.|+.|.+||+... ...+..+.
T Consensus 300 ~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid 379 (595)
T 1fwx_A 300 TVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD 379 (595)
T ss_dssp BEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE
T ss_pred eEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee
Confidence 999999975320 0000 1111122233556899999954566777999999999762 11223333
Q ss_pred cccCC-----eEEEEeCCCCCCeEEEEe---CCCcE----------EEEeCCCCccccc
Q 010390 361 SHDGE-----VTAVNWCPNEAGKIVTSS---DDYTV----------RLWSLENSRCSSM 401 (512)
Q Consensus 361 ~h~~~-----v~~v~~~~~~~~~l~s~~---~dg~i----------~vwd~~~~~~~~~ 401 (512)
.|..+ -.++.++||| ++|+++. .|..+ .++|+.++++...
T Consensus 380 V~yqpGh~~~~~g~t~~~DG-k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv 437 (595)
T 1fwx_A 380 VHYQPGHLKTVMGETLDATN-DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLV 437 (595)
T ss_dssp CSSCEEEEEETTTTSTTCCS-SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred cccccccceeccceEeCCCC-CEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEE
Confidence 34322 1223568999 7877765 34431 8899977665443
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.83 E-value=6.7e-07 Score=81.93 Aligned_cols=243 Identities=9% Similarity=0.031 Sum_probs=142.7
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc--------------------CcCCCEEEEEeeCCCCCeEEEE
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM--------------------GHTGSIKSLCSHPTNSDILVSG 169 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~h~~~v~~l~~~~~~~~~l~s~ 169 (512)
...+++|.+++++++++..++.|..||..+++... +. .....+.++++.+++++ |+.+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 45567889998878888889999999987654321 11 01235789999973324 4444
Q ss_pred eCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee-cCCEEEEEee--------
Q 010390 170 SRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASA-------- 240 (512)
Q Consensus 170 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~-------- 240 (512)
...+.|..+|..++...... . . ...........+++.+ ++...++...
T Consensus 98 d~~~~i~~~d~~~g~~~~~~-~--------~--------------~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLA-T--------S--------------VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp ETTTEEEEECTTCEECEEEE-S--------E--------------ETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred ECCCCEEEEeCCCCEEEEec-c--------c--------------CCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence 44455888886543211000 0 0 0000112467889999 8876665321
Q ss_pred --------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCce
Q 010390 241 --------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPI 311 (512)
Q Consensus 241 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~ 311 (512)
.++.|..||..+++.... .........++++++++.|+++ ...+.|.+|++........
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~~~------------~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~ 222 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETTLL------------LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA 222 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEEEE------------EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE
T ss_pred ceehcccCCCceEEEEeCCCCEEEEe------------ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc
Confidence 136788888765543211 1112345679999999877666 4568999999864322222
Q ss_pred EeeeeceeceeEEEEEECCCCCEEEEecC----------CCCEEEEecCCCCCCCceeccc----cCCeEEEEeCCCCCC
Q 010390 312 QHFSGCRIESFYVKSEICPNASHILSGSS----------DGNAYVWQVNKPQADPIKLKSH----DGEVTAVNWCPNEAG 377 (512)
Q Consensus 312 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg~i~iw~~~~~~~~~~~~~~h----~~~v~~v~~~~~~~~ 377 (512)
..+.. ... ...++++++|++.++... .+.|..+|.. ++. ...+... -..++++++ .++ .
T Consensus 223 ~~~~~--~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~-~~~~~~~~g~~~~~~~~~~~-~~g-~ 295 (322)
T 2fp8_A 223 EVLVK--IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI-LEVIPLPPPFAGEHFEQIQE-HDG-L 295 (322)
T ss_dssp EEEEE--CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCE-EEEEECCTTTTTSCCCEEEE-ETT-E
T ss_pred ceEEe--CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCE-EEEEECCCCCccccceEEEE-eCC-E
Confidence 22221 112 556899999987766543 3567777764 322 2233222 234666766 345 5
Q ss_pred eEEEEeCCCcEEEEeCCCC
Q 010390 378 KIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 378 ~l~s~~~dg~i~vwd~~~~ 396 (512)
++++...++.|.++++...
T Consensus 296 L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 296 LYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEECSSCSEEEEEEC---
T ss_pred EEEeecCCCceEEEecccc
Confidence 6666667888999988643
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.81 E-value=1.9e-06 Score=78.87 Aligned_cols=254 Identities=9% Similarity=0.050 Sum_probs=140.7
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccc--e------eccccCCCcEEEEEEecCCCE
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKAR--I------SDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~------~~~~~h~~~V~~l~~s~~~~~ 122 (512)
..+.++++ .++|+++.++..++.|..||..++.... ......... . .........+..+++.+++..
T Consensus 19 ~~p~~i~~---d~~g~~l~v~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 19 YAPNSFTF---DSTNKGFYTSVQDGRVIKYEGPNSGFVD--FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp SCCCCEEC---CTTCSSEEEECTTSEEEEECCTTTCEEE--EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred CCceEEEE---cCCCCEEEEEcCCCeEEEECCCCCceEE--EecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 44678888 8999978888889999999876542210 000000000 0 000011245889999973334
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecc---cC-cCCCEEEEEeeC-CCCCeEEEEeC-----------------CCcEEEEeC
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGAL---MG-HTGSIKSLCSHP-TNSDILVSGSR-----------------DGSFAIWDL 180 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~---~~-h~~~v~~l~~~~-~~~~~l~s~~~-----------------dg~i~vwd~ 180 (512)
|+.+...+.|..+|..+++..... .+ .....+.+++.+ ++ +++++-.. ++.|..||.
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 555555555888997765422111 11 113467888888 77 65555432 255666665
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~ 260 (512)
.+++.. ...........++++++++.++++...++.|..|++.........
T Consensus 173 ~~~~~~----------------------------~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~- 223 (322)
T 2fp8_A 173 STKETT----------------------------LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE- 223 (322)
T ss_dssp TTTEEE----------------------------EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-
T ss_pred CCCEEE----------------------------EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-
Confidence 433210 000111245678999999988776666789999998753210000
Q ss_pred CCCccccccccccccCeeEEEeCCCCCEEEEEec----------CCeEEEEEcccCCCCceEeeeecee--ceeEEEEEE
Q 010390 261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCM----------DHRIYLYNVLQLDKGPIQHFSGCRI--ESFYVKSEI 328 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~ 328 (512)
....... ...++++++|++.++... .+.|..+|.. ...+..+..... ...+..+++
T Consensus 224 --------~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~---G~~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 224 --------VLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF---GNILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp --------EEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT---SCEEEEEECCTTTTTSCCCEEEE
T ss_pred --------eEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC---CCEEEEEECCCCCccccceEEEE
Confidence 0111112 677899999986666544 4667788753 223333322110 122334444
Q ss_pred CCCCCEEEEecCCCCEEEEecCCC
Q 010390 329 CPNASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 329 s~~~~~l~~g~~dg~i~iw~~~~~ 352 (512)
.+++++++...++.|..+++...
T Consensus 292 -~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 292 -HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp -ETTEEEEECSSCSEEEEEEC---
T ss_pred -eCCEEEEeecCCCceEEEecccc
Confidence 45666666667788999987643
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=8.8e-07 Score=77.12 Aligned_cols=212 Identities=10% Similarity=-0.048 Sum_probs=133.6
Q ss_pred eeeecccCcCC--CEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceec
Q 010390 141 KCTGALMGHTG--SIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR 216 (512)
Q Consensus 141 ~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (512)
+.+.++. |.. ....+.|++++ .++++.+. ++.|+++|+.+++.......
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l------------------------- 62 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM------------------------- 62 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC-------------------------
T ss_pred eEEEEEE-CCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec-------------------------
Confidence 3455553 443 36899999875 66666553 57999999998765432110
Q ss_pred ccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC
Q 010390 217 KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH 296 (512)
Q Consensus 217 ~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 296 (512)
........+++ ++..++.+...++.+.++|..+.+.......+ .. ....+++||+.|+++..++
T Consensus 63 -~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-----------~~--~g~glt~Dg~~l~vs~gs~ 126 (266)
T 2iwa_A 63 -DDSYFGEGLTL--LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-----------MK--DGWGLATDGKILYGSDGTS 126 (266)
T ss_dssp -CTTCCEEEEEE--ETTEEEEEETTCSEEEEEETTTTEEEEEEECC-----------SS--SCCEEEECSSSEEEECSSS
T ss_pred -CCCcceEEEEE--eCCEEEEEEecCCEEEEEECCCCcEEEEEECC-----------CC--CeEEEEECCCEEEEECCCC
Confidence 00111223444 36677777778999999999988776543211 01 1233555777777777889
Q ss_pred eEEEEEcccCCCCceEeeeec-eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc--c-----------
Q 010390 297 RIYLYNVLQLDKGPIQHFSGC-RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS--H----------- 362 (512)
Q Consensus 297 ~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~--h----------- 362 (512)
.|.++|..+.+.......... ........+.|. ++...+....++.|.+.|..+++.. ..+.- .
T Consensus 127 ~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~-~~I~~~g~~~~~~~~~~~~ 204 (266)
T 2iwa_A 127 ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL-GWILLPNLRKKLIDEGFRD 204 (266)
T ss_dssp EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE-EEEECHHHHHHHHHTTCTT
T ss_pred eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE-EEEECCCcccccccccccc
Confidence 999999866432211111111 111124456676 6765566656789999999988753 33321 1
Q ss_pred cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
....+.|+|+|++..+++++...+.|.+-++....
T Consensus 205 ~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 205 IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred cCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 13568999999986788888888999999987653
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.66 E-value=9.4e-07 Score=76.94 Aligned_cols=204 Identities=11% Similarity=-0.051 Sum_probs=127.2
Q ss_pred cEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390 110 AIFDLCWIKEDTNILTASG--DQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
....+.|++++...++.+. ++.|.+.|+.+++.+..+.-.. .....+++. +..+.++.-.++.+.++|..+.+..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4689999998754455443 5799999999999888764222 233456665 4356666667899999999865433
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
... ...... .....+++..++++. .++.|.++|..+.+.........
T Consensus 100 ~~i---------------------------~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~--- 146 (266)
T 2iwa_A 100 KNF---------------------------THQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKY--- 146 (266)
T ss_dssp EEE---------------------------ECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEE---
T ss_pred EEE---------------------------ECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECC---
Confidence 211 000011 233556788888766 58899999999877655432110
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece---------eceeEEEEEECCCCCE-EE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR---------IESFYVKSEICPNASH-IL 336 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~-l~ 336 (512)
.......++.+.+. ++...+....++.|.+.|..+++......+.+.. .......++|+|+++. ++
T Consensus 147 ---~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV 222 (266)
T 2iwa_A 147 ---NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV 222 (266)
T ss_dssp ---TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred ---CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence 00111235677777 6755544446789999998775432222222110 1124567999999765 46
Q ss_pred EecCCCCEEEEecCCC
Q 010390 337 SGSSDGNAYVWQVNKP 352 (512)
Q Consensus 337 ~g~~dg~i~iw~~~~~ 352 (512)
++...+.+.+.++...
T Consensus 223 Tgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 223 TGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTCSEEEEEEEEEC
T ss_pred ECCCCCeEEEEEEecc
Confidence 6667788888888654
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.63 E-value=7.3e-07 Score=90.03 Aligned_cols=324 Identities=11% Similarity=0.022 Sum_probs=165.7
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcE-EEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAI-FDLCWIKEDTNILTASGDQTIKIWDAEKKKC 142 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 142 (512)
+..+++++.++.|.-+|..+++..-....... ........ ..+ ..+.+ .+..|+.++.|+.|..+|..+|+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVA----KVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCC----GGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCC----ccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 45666677788899999887754221110000 00000000 000 11222 355788888999999999999998
Q ss_pred eecccCcC----CCEEE-EEeeCCCCCeEEEEeC------CCcEEEEeCCCCCCCCCccccc----eeeecccccccccc
Q 010390 143 TGALMGHT----GSIKS-LCSHPTNSDILVSGSR------DGSFAIWDLRCKSSPKSNCAES----FVFSSAVVKGAHLL 207 (512)
Q Consensus 143 ~~~~~~h~----~~v~~-l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 207 (512)
+..+.... ..+.+ ..+. + ..++.+.. +|.|..+|..+++..-...... ..............
T Consensus 140 ~W~~~~~~~~~~~~~~~~P~v~--~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 216 (668)
T 1kv9_A 140 IWSQQTTDPAKPYSITGAPRVV--K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT 216 (668)
T ss_dssp EEEEECSCTTSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eeeeccCCCCCcceecCCCEEE--C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence 87665321 11111 1111 2 34555433 5899999999887654322100 00000000000000
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCC-------------------eEEEEeccCccceecccCCCccccc
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS-------------------IVKFWDTRNLKAQITQAWPHAESSS 268 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~ 268 (512)
...........+......+++.++...+++.. .++ .|..+|.++++........+...-
T Consensus 217 ~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~-~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w- 294 (668)
T 1kv9_A 217 WQGDQYWKLGGGGTVWDSMAYDPELDLLYVGT-GNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW- 294 (668)
T ss_dssp CCSSCHHHHCEECCCCSCEEEETTTTEEEEEC-CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS-
T ss_pred CCccceeeeCCCCccccceEEcCCCCEEEEeC-CCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc-
Confidence 00000000011222234567888777766533 444 499999999998776533211000
Q ss_pred cccccccCeeEEEeCCCCC---EEEEEecCCeEEEEEcccCCCCceEeeee------------ce---------ece---
Q 010390 269 AKETRLHGISSLSQDSNGV---FLTASCMDHRIYLYNVLQLDKGPIQHFSG------------CR---------IES--- 321 (512)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~---------~~~--- 321 (512)
.. ....+.....+..+|+ .++.++.+|.++++|..+++......+.. .. ...
T Consensus 295 d~-~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 373 (668)
T 1kv9_A 295 DF-TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVM 373 (668)
T ss_dssp CC-CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEE
T ss_pred cc-cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEE
Confidence 00 0001222222223564 68888999999999986654221000000 00 000
Q ss_pred --------eEEEEEECCCCCEEEEe------------------------------------cCCCCEEEEecCCCCCCCc
Q 010390 322 --------FYVKSEICPNASHILSG------------------------------------SSDGNAYVWQVNKPQADPI 357 (512)
Q Consensus 322 --------~~~~~~~s~~~~~l~~g------------------------------------~~dg~i~iw~~~~~~~~~~ 357 (512)
....++++|+...++.. ..+|.|..||+.+++...
T Consensus 374 ~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W- 452 (668)
T 1kv9_A 374 WPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW- 452 (668)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE-
T ss_pred CCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE-
Confidence 00115677766655431 134789999998887632
Q ss_pred eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
.... ...+....+...+ .+++.++.||.|+.||..+++.+..+.
T Consensus 453 ~~~~-~~~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 453 KVPY-PTHWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp EEEE-SSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EccC-CCCCcCceeEeCC-CEEEEECCcccchhhhhhcChhheEec
Confidence 2221 2223323333445 688899999999999999999876544
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.62 E-value=2.3e-06 Score=73.48 Aligned_cols=194 Identities=10% Similarity=0.001 Sum_probs=116.9
Q ss_pred eeecccCcCC--CEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc
Q 010390 142 CTGALMGHTG--SIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217 (512)
Q Consensus 142 ~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (512)
.+.++. |.. ....+.|+ ++ .++.+.+.+| .|+++|+.+++.......
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-------------------------- 83 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIEL-------------------------- 83 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEEC--------------------------
T ss_pred EEEEec-CCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEec--------------------------
Confidence 445553 543 34788898 45 7788888776 899999998865432211
Q ss_pred cccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCe
Q 010390 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR 297 (512)
Q Consensus 218 ~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 297 (512)
..........+++..+..+...++.+.+||..+.+...+...+ . ....+++++..|+.+..++.
T Consensus 84 --~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~---------~-----eG~glt~dg~~L~~SdGs~~ 147 (262)
T 3nol_A 84 --GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD---------G-----EGWGLTHNDQYLIMSDGTPV 147 (262)
T ss_dssp --CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS---------S-----CCCCEEECSSCEEECCSSSE
T ss_pred --CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC---------C-----CceEEecCCCEEEEECCCCe
Confidence 1122222233346677766667999999999998877654211 1 12233356777877777889
Q ss_pred EEEEEcccCCCCceEeeeec-eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc------------ccC
Q 010390 298 IYLYNVLQLDKGPIQHFSGC-RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS------------HDG 364 (512)
Q Consensus 298 i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~------------h~~ 364 (512)
|.++|..+.+.......... ..-..+..+.|. +|+..+..-.++.|.+.|..+++.. ..+.- -..
T Consensus 148 i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~-~~Id~~~L~~~~~~~~~~~~ 225 (262)
T 3nol_A 148 LRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT-GIIDLNGILAEAGPLPSPID 225 (262)
T ss_dssp EEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE-EEEECTTGGGGSCSCCSSCC
T ss_pred EEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE-EEEECCcCccccccccCcCC
Confidence 99999866433222222111 111223335564 6765555556788999999887652 22211 123
Q ss_pred CeEEEEeCCCCCCeEEEE
Q 010390 365 EVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 365 ~v~~v~~~~~~~~~l~s~ 382 (512)
..+.|+|+|++..++++|
T Consensus 226 vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 226 VLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CEEEEEEETTTTEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEC
Confidence 579999999984444444
No 250
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.62 E-value=0.00014 Score=66.99 Aligned_cols=234 Identities=9% Similarity=-0.063 Sum_probs=138.2
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCC
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKK 140 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~ 140 (512)
.+++ +|+.+. ...|+..+++.... ..+......+..++|.+.+..|+ +-...+.|..+++...
T Consensus 42 ~~~~-~ll~~~-~~~I~~i~~~g~~~--------------~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 42 GPEP-VLLFAN-RIDIRQVLPHRSEY--------------TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp SSCC-EEEEEC-BSCEEEECTTSCCE--------------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccCc-eeEeec-ccceEEEeCCCCee--------------EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence 4543 444433 34587777765321 11222334588999998666665 4445788999998766
Q ss_pred eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccc
Q 010390 141 KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAAS 220 (512)
Q Consensus 141 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (512)
.....+.........+++.+.+++++++-...+.|.+.++....... ......
T Consensus 106 ~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~---------------------------l~~~~l 158 (349)
T 3v64_C 106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---------------------------LLWQSL 158 (349)
T ss_dssp SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---------------------------EECTTC
T ss_pred CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE---------------------------EEeCCC
Confidence 54333332334557888887665677777777889999886432111 011112
Q ss_pred ccEEEEEEeecCCEEEEEeecC-CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeE
Q 010390 221 MSITSVLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRI 298 (512)
Q Consensus 221 ~~v~~~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i 298 (512)
.....++++|.+..++.+...+ +.|..++++....... ..........+++++++..|+.+. ..+.|
T Consensus 159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-----------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I 227 (349)
T 3v64_C 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-----------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 227 (349)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES-----------CCSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE-----------EECCCCCcceEEEeCCCCEEEEEECCCCEE
Confidence 3568899999877777766555 7888888775432211 111223468899998776666654 56789
Q ss_pred EEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 299 YLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
..+|+..... ..+.... ......+++ ..+..+++-...+.|..++..+++.
T Consensus 228 ~~~~~dG~~~---~~~~~~~-~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 228 ERANLDGSHR---KAVISQG-LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EEEETTSCSC---EEEECSS-CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEeCCCCce---EEEEeCC-CCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCc
Confidence 9999754221 1111111 122344666 3445555655667787777555544
No 251
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=0.00011 Score=76.10 Aligned_cols=299 Identities=10% Similarity=0.053 Sum_probs=168.7
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccc-cceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEK-ARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
.|.+|.. .++|. |..|+..+-|.++|..+..........-... .......-....|.++...++|. |..|+.++
T Consensus 259 ~i~~i~~---d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~ 333 (781)
T 3v9f_A 259 YIFSIKQ---LKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG 333 (781)
T ss_dssp CEEEEEE---CTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred eEEEEEE---CCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence 4555555 66766 4456654568889876653211000000000 00000112356799999887775 66677666
Q ss_pred cEEEEeCCCCeeeecc---------cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 131 TIKIWDAEKKKCTGAL---------MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~---------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
-|..++..++...... ......|.++...+++ .|..|+.++-|..||..+.......
T Consensus 334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~------------ 399 (781)
T 3v9f_A 334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNK------------ 399 (781)
T ss_dssp CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-------------
T ss_pred eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEcc------------
Confidence 6999987765432211 0123568999887765 3556666667888987643211100
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
.........|.++...+++...+ |+.++.|..+|..+++...... .......|.++.
T Consensus 400 ------------~~~~~~~~~v~~i~~d~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~~---------~~~~~~~v~~i~ 456 (781)
T 3v9f_A 400 ------------ENRELLSNSVLCSLKDSEGNLWF--GTYLGNISYYNTRLKKFQIIEL---------EKNELLDVRVFY 456 (781)
T ss_dssp ----------------CCCSBEEEEEECTTSCEEE--EETTEEEEEECSSSCEEEECCS---------TTTCCCCEEEEE
T ss_pred ------------CCCCCCCcceEEEEECCCCCEEE--EeccCCEEEEcCCCCcEEEecc---------CCCCCCeEEEEE
Confidence 00012235688888887777655 4456779999987665332110 011235688999
Q ss_pred eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390 282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360 (512)
Q Consensus 282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~ 360 (512)
.++++.+.+ |+. +-|..||..+........... ......+.++...++|.+.+....+| +..|+..+.+. ..+.
T Consensus 457 ~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~--~~~~ 531 (781)
T 3v9f_A 457 EDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV--RKFN 531 (781)
T ss_dssp ECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE--EEEC
T ss_pred ECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE--EEcc
Confidence 888886444 444 568889875533222111110 01124577888888888665544345 78888765432 1221
Q ss_pred c----ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 361 S----HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 361 ~----h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
. ....|.++...+++ .+.++ +.+|.|..||..+++..
T Consensus 532 ~~~~l~~~~i~~i~~d~~g-~lWi~-T~~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 532 QYEGFCSNTINQIYRSSKG-QMWLA-TGEGLVCFPSARNFDYQ 572 (781)
T ss_dssp TTTTCSCSCEEEEEECTTS-CEEEE-ETTEEEEESCTTTCCCE
T ss_pred CCCCCCCCeeEEEEECCCC-CEEEE-ECCCceEEECCCCCcEE
Confidence 1 23578999998887 54444 44776589998877643
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.56 E-value=0.00012 Score=66.11 Aligned_cols=239 Identities=12% Similarity=0.020 Sum_probs=130.3
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCC
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSP 186 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~ 186 (512)
.....++|+++++.+++-..++.|..||.... ....+. ....+..+++.+++ +++++..... .|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEE
Confidence 56788999999987777667899999997654 333232 23468899999988 6655554332 3666665544321
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
... .. ........++..+++ .++++...++.|..+|...+........+....
T Consensus 109 ~~~-------------------------~~-~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 109 TLL-------------------------TL-PDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp EEE-------------------------EC-TTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred EEE-------------------------eC-CCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 100 00 001122333333433 444444457889888876542111000000000
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEccc-CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQ-LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 344 (512)
. ...........+ ++++..|+++. ..+.|..|++.. ........+... .....++++++|+++++....+.|
T Consensus 162 ~-~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V 235 (306)
T 2p4o_A 162 S-NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSV 235 (306)
T ss_dssp S-STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCE
T ss_pred c-cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeE
Confidence 0 000111223444 77887666555 568999999864 211111222111 123348899999988877778889
Q ss_pred EEEecCCCCCC-CceeccccCCeEEEEeC---CCCCCeEEEEeCC
Q 010390 345 YVWQVNKPQAD-PIKLKSHDGEVTAVNWC---PNEAGKIVTSSDD 385 (512)
Q Consensus 345 ~iw~~~~~~~~-~~~~~~h~~~v~~v~~~---~~~~~~l~s~~~d 385 (512)
.+++.. ++.. .......-...++++|. |++ ..|+.++..
T Consensus 236 ~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~-~~LyVt~~~ 278 (306)
T 2p4o_A 236 VRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTNG 278 (306)
T ss_dssp EEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTT-TEEEEEECT
T ss_pred EEECCC-CCEEEEeecccccCCceEEEEecccCCC-CEEEEECCC
Confidence 999875 3221 11112223568999998 787 444444433
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.55 E-value=1.1e-05 Score=69.37 Aligned_cols=194 Identities=9% Similarity=-0.036 Sum_probs=119.9
Q ss_pred eeeecccCcC--CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccc
Q 010390 141 KCTGALMGHT--GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA 218 (512)
Q Consensus 141 ~~~~~~~~h~--~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (512)
+.+.++. |. .....+.|+. + .++++.+.+|.|+++|+.+++..... .
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--------------------------- 92 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-R--------------------------- 92 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-E---------------------------
T ss_pred EEEEEEc-CCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-C---------------------------
Confidence 3445553 44 3457888874 3 78888889999999999988765422 1
Q ss_pred ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeE
Q 010390 219 ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRI 298 (512)
Q Consensus 219 ~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 298 (512)
.......-..+++..++.+...++.+.+||..+.+...+...+ ..-..++ +++..|+.+..++.|
T Consensus 93 -~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~------------~eGwGLt--~Dg~~L~vSdGs~~l 157 (268)
T 3nok_A 93 -LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS------------GEGWGLC--YWNGKLVRSDGGTML 157 (268)
T ss_dssp -CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS------------SCCCCEE--EETTEEEEECSSSEE
T ss_pred -CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC------------CceeEEe--cCCCEEEEECCCCEE
Confidence 0112221123345566666668999999999998877654221 1112333 567888888889999
Q ss_pred EEEEcccCCCCceEeeeece-eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc-------------ccC
Q 010390 299 YLYNVLQLDKGPIQHFSGCR-IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS-------------HDG 364 (512)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~-------------h~~ 364 (512)
.++|..+.+........... .-..+..+.|. +|+..+..-.+..|.+.|..+++.. ..+.- -..
T Consensus 158 ~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~~~~ 235 (268)
T 3nok_A 158 TFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDASALTRAVAGQVTNPEA 235 (268)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCCTTC
T ss_pred EEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECCCCcccccccccCcCC
Confidence 99998664332222221111 11123445665 6765555556788999999888652 22211 124
Q ss_pred CeEEEEeCCCCCCeEEEE
Q 010390 365 EVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 365 ~v~~v~~~~~~~~~l~s~ 382 (512)
-.+.|+|+|++..+++||
T Consensus 236 vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 236 VLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CEEEEEECTTTCCEEEEE
T ss_pred ceEEEEEcCCCCEEEEeC
Confidence 679999999885666665
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.55 E-value=1.7e-06 Score=74.26 Aligned_cols=191 Identities=10% Similarity=0.036 Sum_probs=116.9
Q ss_pred cEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCeeeecccCcCCC-EEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390 110 AIFDLCWIKEDTNILTASGDQ--TIKIWDAEKKKCTGALMGHTGS-IKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
-...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+...... -..++.. +..+.+..-.++.+.+||..+.+..
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 35788998 676666777766 8999999999988877543321 2334444 4356666667899999999876644
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
..+.. .. ....+.+++..++.+. .++.|.++|..+.+.........
T Consensus 121 ~ti~~----------------------------~~--eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~--- 166 (262)
T 3nol_A 121 RSFNY----------------------------DG--EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTA--- 166 (262)
T ss_dssp EEEEC----------------------------SS--CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEE---
T ss_pred EEEEC----------------------------CC--CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEecc---
Confidence 32211 01 1223336777777755 37789999999887665432100
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec--------eeceeEEEEEECCCCCEEEEe
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC--------RIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~g 338 (512)
.......++.+.+. +|+..+..-.++.|.+.|..+++......+.+- ........+||+|+++.|++.
T Consensus 167 ---~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 167 ---HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp ---TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred ---CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 00011234456776 676554444678999999876543322222211 112346779999998777666
Q ss_pred cCC
Q 010390 339 SSD 341 (512)
Q Consensus 339 ~~d 341 (512)
+..
T Consensus 243 GK~ 245 (262)
T 3nol_A 243 GKL 245 (262)
T ss_dssp ETT
T ss_pred CCC
Confidence 644
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=0.0002 Score=74.14 Aligned_cols=298 Identities=11% Similarity=0.025 Sum_probs=164.4
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 131 (512)
.|.+|.. .++|.+.+ |+.+ -+.+||..+..... ... ............|.++...++|. |..|+..+-
T Consensus 212 ~i~~i~~---d~~g~lwi-gt~~-Gl~~~d~~~~~~~~--~~~----~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~G 279 (781)
T 3v9f_A 212 DVRCIYK---DTNGNIWI-GTSK-GLALFNANTETFTN--FHN----NPGNIHGALSSYIFSIKQLKDNK-LWIATELNG 279 (781)
T ss_dssp SEEEEEE---CTTCCEEE-EETT-EEEEEETTTTEEEC-----------------CCCCEEEEEECTTSE-EEEEESSSC
T ss_pred ceeEEEE---cCCCCEEE-EeCC-cHheECCCCCcEEE--EEc----CCCccccccCceEEEEEECCCCC-EEEEeCCCC
Confidence 3555555 67776554 4444 58889876542110 000 00000011246799999887765 555666455
Q ss_pred EEEEeCCCCeeeeccc--------------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 132 IKIWDAEKKKCTGALM--------------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
|.++|..+++...... .....|.++...+++ .|..|+.++-|..++.............
T Consensus 280 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~----- 352 (781)
T 3v9f_A 280 IMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWSYSP----- 352 (781)
T ss_dssp EEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC--------
T ss_pred eEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeeccCc-----
Confidence 8899987765322111 134579999888765 3666776777888887654321100000
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
. ...........|.++...+++...+ |+.++-|..||..+....... . ........|
T Consensus 353 -----------~--~~~~~~l~~~~v~~i~~d~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~--~------~~~~~~~~v 409 (781)
T 3v9f_A 353 -----------T--QMNESSLSNKVVSSVCDDGQGKLWI--GTDGGGINVFENGKRVAIYNK--E------NRELLSNSV 409 (781)
T ss_dssp --------------CCCSSCCSSSCEEEEEECTTSCEEE--EEBSSCEEEEETTEEEEECC-------------CCCSBE
T ss_pred -----------c--ccccCCCCCcceEEEEEcCCCCEEE--EeCCCcEEEEECCCCeEEEcc--C------CCCCCCcce
Confidence 0 0000011234688888888777665 445677889998765432210 0 011223568
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
.++..++++.+. +|+.++-|..+|..+. ....+.. ......+.++...+++.+.+. +..| |..|+..+.+..
T Consensus 410 ~~i~~d~~g~lW-igt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~~~- 482 (781)
T 3v9f_A 410 LCSLKDSEGNLW-FGTYLGNISYYNTRLK---KFQIIELEKNELLDVRVFYEDKNKKIWIG-THAG-VFVIDLASKKVI- 482 (781)
T ss_dssp EEEEECTTSCEE-EEETTEEEEEECSSSC---EEEECCSTTTCCCCEEEEEECTTSEEEEE-ETTE-EEEEESSSSSCC-
T ss_pred EEEEECCCCCEE-EEeccCCEEEEcCCCC---cEEEeccCCCCCCeEEEEEECCCCCEEEE-ECCc-eEEEeCCCCeEE-
Confidence 899988887644 4666677888886432 1222211 112245677888887775554 4444 889988765432
Q ss_pred ceeccc-----cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 357 IKLKSH-----DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 357 ~~~~~h-----~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
...... ...|.++...+++ .+. .|+.++-|..||..+++...
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~~g-~lW-igt~~~Gl~~~~~~~~~~~~ 529 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDSEG-RFW-IGTFGGGVGIYTPDMQLVRK 529 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECTTC-CEE-EEESSSCEEEECTTCCEEEE
T ss_pred ecccCcccccccceeEEEEEcCCC-CEE-EEEcCCCEEEEeCCCCeEEE
Confidence 111111 3579999998887 444 44543447778887765443
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.53 E-value=2.1e-06 Score=73.74 Aligned_cols=189 Identities=11% Similarity=0.044 Sum_probs=116.4
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCE--EEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSI--KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
.-...+.|+ ++.+.++.+.+|.|+++|+++++.+..+ -. ... ..+++. +..+.+..-.++.+.+||..+.+..
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 345788887 4566668888899999999999988777 22 233 335554 4466677777899999999876543
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
..+. . ...-..+ .+++..++.+. .++.|.++|..+.+.........
T Consensus 130 ~ti~---------------------------~-~~eGwGL--t~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~--- 175 (268)
T 3nok_A 130 RTTR---------------------------Y-SGEGWGL--CYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKL--- 175 (268)
T ss_dssp EEEE---------------------------C-SSCCCCE--EEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEE---
T ss_pred EEEe---------------------------C-CCceeEE--ecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCC---
Confidence 3221 0 1111233 35678888765 48899999999887665432110
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee---------ceeceeEEEEEECCCCCEEEE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG---------CRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~~~l~~ 337 (512)
.......++.+.|. +|...+..-.++.|.+.|..+++......+.+ .........+|++|+++.|+.
T Consensus 176 ---~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 176 ---RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp ---TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred ---CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence 00111234566766 66555444467899999987654333222221 112235678999998666555
Q ss_pred ecC
Q 010390 338 GSS 340 (512)
Q Consensus 338 g~~ 340 (512)
.+.
T Consensus 252 TGK 254 (268)
T 3nok_A 252 TGK 254 (268)
T ss_dssp EET
T ss_pred eCC
Confidence 443
No 257
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=9e-05 Score=69.39 Aligned_cols=230 Identities=9% Similarity=-0.066 Sum_probs=136.3
Q ss_pred EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeeec
Q 010390 67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTGA 145 (512)
Q Consensus 67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~ 145 (512)
+|+.+. ...|+.+++..... ..+......+..++|.+.+..|+ +-...+.|..+++........
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~--------------~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 153 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEY--------------TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 153 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCC--------------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred eeEeec-CccceeeccCCCcE--------------EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence 444433 35688888765432 11222335688999998666555 545678899999877654333
Q ss_pred ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
+.........+++.+.++.++++-...+.|.+.++....... ...........
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~---------------------------l~~~~l~~P~g 206 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---------------------------LLWQSLEKPRA 206 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE---------------------------EECSSCSCEEE
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE---------------------------eecCCCCCCcE
Confidence 332233456788887665666776667788888876432110 01112235788
Q ss_pred EEEeecCCEEEEEeecC-CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEc
Q 010390 226 VLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNV 303 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~ 303 (512)
+++.|.+..++.+...+ +.|..+++........ ..........|++++++..|+.+. ..+.|..+|+
T Consensus 207 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-----------~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-----------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-----------ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred EEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE-----------EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 99999888777765445 7788888765432221 111223467899998766666554 5678999997
Q ss_pred ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
..... ..+.... ......+++ ..+.++++-...+.|..++..+++.
T Consensus 276 dG~~~---~~~~~~~-~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 276 DGSHR---KAVISQG-LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp TSCSC---EEEECSS-CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCee---EEEEECC-CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence 54221 1111111 122345666 3445556666677788888555544
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.50 E-value=0.00058 Score=61.94 Aligned_cols=231 Identities=8% Similarity=-0.045 Sum_probs=134.4
Q ss_pred EEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCC----Cee
Q 010390 68 FAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEK----KKC 142 (512)
Q Consensus 68 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~----~~~ 142 (512)
|+.+. ...|+..|+++... .. +........+++|.+.+..|+ +-..++.|..+++.. ...
T Consensus 4 ll~~~-~~~I~~i~~~~~~~-------------~~-~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEY-------------TS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCC-------------EE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred EEEEC-CCeEEEEECCCcce-------------Ee-hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 44443 34688899876532 11 112345688999998766555 445568999999876 222
Q ss_pred eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390 143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222 (512)
Q Consensus 143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (512)
...+...-.....+++.+.+++++++-...+.|.+.++....... ........
T Consensus 69 ~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~---------------------------~~~~~~~~ 121 (316)
T 1ijq_A 69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---------------------------LFRENGSK 121 (316)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE---------------------------EEECTTCC
T ss_pred EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEE---------------------------EEECCCCC
Confidence 222222223557888887664666676777899999876432100 00111235
Q ss_pred EEEEEEeecCCEEEEEeecC-CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEE
Q 010390 223 ITSVLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYL 300 (512)
Q Consensus 223 v~~~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i 300 (512)
...++++|.+..++.+.... +.|...++........ ..........+++++++..|+.+. ..+.|..
T Consensus 122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~-----------~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-----------VTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-----------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE-----------EECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 78899999777777665333 6888888764322111 111224577899998877776665 5579999
Q ss_pred EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
+|+.......+ ............+++. .+.++++-...+.|..++..+++.
T Consensus 191 ~d~dg~~~~~~--~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 191 IDVNGGNRKTI--LEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EETTSCSCEEE--EECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EecCCCceEEE--eecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 99864222111 1111111223456664 355556666677888888766554
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.49 E-value=1.3e-05 Score=81.03 Aligned_cols=288 Identities=9% Similarity=0.019 Sum_probs=142.2
Q ss_pred cC-CCcEEEEeeCCC-----------cEEEEECCCCCCccccccccccccceecc-ccCCCcEEEEEEecCCCEEEEEeC
Q 010390 62 SK-NSHIFAVSDEDG-----------YVSLFDSRRKLPSFACHRENAEKARISDW-VAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 62 s~-~~~~latg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
.+ ++++++.|+.+. .+.+||..+..... +..+ ..+.....++++..+++.++.|+.
T Consensus 194 ~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-----------~~~~~~~~~~~~~~~~~~~~g~lyv~GG~ 262 (656)
T 1k3i_A 194 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-----------RTVTVTKHDMFCPGISMDGNGQIVVTGGN 262 (656)
T ss_dssp ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-----------CEEEECSCCCSSCEEEECTTSCEEEECSS
T ss_pred EecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-----------CcccCCCCCCccccccCCCCCCEEEeCCC
Confidence 56 889999887543 58899987764311 1111 122333445677789999999884
Q ss_pred -CCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEe-CC-----CcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 129 -DQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGS-RD-----GSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 129 -dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
+..+.+||..+++-...-..+. ..-.+++..+++ ++++.|+ .+ ..+.+||..+..-.......
T Consensus 263 ~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~-------- 333 (656)
T 1k3i_A 263 DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAK-------- 333 (656)
T ss_dssp STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSC--------
T ss_pred CCCceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCcc--------
Confidence 5689999988775433211111 112344555666 7888888 34 46889998754311100000
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc----cccccC
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK----ETRLHG 276 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 276 (512)
..... .... .........+..+.. .++..+. .+ ....+..||..+......... . .. ......
T Consensus 334 --~~p~~-~~~~-~~~~~~~~~iyv~Gg-~~g~~~~-~~-~~~~v~~yd~~~~~w~~~~~~-~-----~~~~~~~~~~~~ 400 (656)
T 1k3i_A 334 --VNPML-TADK-QGLYRSDNHAWLFGW-KKGSVFQ-AG-PSTAMNWYYTSGSGDVKSAGK-R-----QSNRGVAPDAMC 400 (656)
T ss_dssp --SGGGC-CCCT-TGGGTTTCSCCEEEC-GGGCEEE-CC-SSSEEEEEECSTTCEEEEEEE-C-----EETTEECCCCBT
T ss_pred --ccccc-cccc-cceeecCCceEEEEC-CCCcEEE-ec-CccceeeeecCCcceeecCCc-c-----ccccccCCCCCC
Confidence 00000 0000 000001111111111 1222221 12 245678888876543211100 0 00 000011
Q ss_pred eeEEEeC-CCCCEEEEEecCC-----------eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC---
Q 010390 277 ISSLSQD-SNGVFLTASCMDH-----------RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD--- 341 (512)
Q Consensus 277 i~~~~~~-~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--- 341 (512)
-.++.+. .++++++.|+.++ .|.+||........+. ............++..|++++++.|+.+
T Consensus 401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence 2334443 3678888887542 6777776542211111 0011111112234666899999999854
Q ss_pred --------CCEEEEecCCCCCC-CceeccccCCeEEEEeCCCCCCeEEEEeC
Q 010390 342 --------GNAYVWQVNKPQAD-PIKLKSHDGEVTAVNWCPNEAGKIVTSSD 384 (512)
Q Consensus 342 --------g~i~iw~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 384 (512)
..+.+||..+.+-. ...+........+..+.+++ ++++.||.
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg-~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDG-RVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTS-CEEEEECC
T ss_pred CcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCc-EEEecCCC
Confidence 46899998765321 11111112223345567888 89999885
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.48 E-value=4.3e-05 Score=78.42 Aligned_cols=252 Identities=10% Similarity=0.014 Sum_probs=130.0
Q ss_pred cCCC-cEEEEEEe-cCCCEEEEEeC-CC----cEEEEeCCCC-eeeec-ccCcCCCEEEEEeeCCCCCeEEEEeCC----
Q 010390 106 AHQN-AIFDLCWI-KEDTNILTASG-DQ----TIKIWDAEKK-KCTGA-LMGHTGSIKSLCSHPTNSDILVSGSRD---- 172 (512)
Q Consensus 106 ~h~~-~V~~l~~s-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~d---- 172 (512)
+|.- .+...+|| |||++|+.+.. +| +|+++|+.++ +.+.. +. .....++|+|++ +.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg-~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDH-TSLFYVTKDETLR 245 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSST-TEEEEEEECTTCC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCC-CEEEEEEECCCCC
Confidence 3443 68889999 99999884432 33 5999999998 63221 11 113467899998 555554544
Q ss_pred -CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec--CCeEEEEe
Q 010390 173 -GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV--NSIVKFWD 249 (512)
Q Consensus 173 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~--dg~i~iwd 249 (512)
..|.++++.++..... .+. ..........+.|+||++.|+..... ...|.++|
T Consensus 246 ~~~v~~~~lgt~~~~~~-----lv~-------------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDV-----CLY-------------------EEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp EEEEEEEETTSCGGGCE-----EEE-------------------ECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred CCEEEEEECCCCchhcE-----EEE-------------------ecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence 2577777754321100 000 00112245678999999998876532 34688888
Q ss_pred ccCcccee--cccCCCccccccccccccCeeEEEeCCCCCEEEEEecC----CeEEEEEcccCCCCceEe-eeeceecee
Q 010390 250 TRNLKAQI--TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD----HRIYLYNVLQLDKGPIQH-FSGCRIESF 322 (512)
Q Consensus 250 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~-~~~~~~~~~ 322 (512)
+.++.... ... .........++.|+.++.+++.+..+ ..|..+|+... ..... +..+.....
T Consensus 302 ~~~~~~~~~~~~l---------~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~--~~~~~~li~~~~~~~ 370 (751)
T 2xe4_A 302 LRKGNAHNTLEIV---------RPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVF 370 (751)
T ss_dssp SSSCTTCCCEEES---------SCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST--TCCCCEEECCCSSEE
T ss_pred CCCCCCCceeEEe---------ecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc--ccceeeEECCCCCcE
Confidence 87652111 111 11112334455554444444554443 36777776432 11111 111211222
Q ss_pred EEEEEECCCCCEEEEecCCCCE--EEEec-------CCCCCCCceec-cccCCeEEEEe----CCCCCCeEEEEeCC---
Q 010390 323 YVKSEICPNASHILSGSSDGNA--YVWQV-------NKPQADPIKLK-SHDGEVTAVNW----CPNEAGKIVTSSDD--- 385 (512)
Q Consensus 323 ~~~~~~s~~~~~l~~g~~dg~i--~iw~~-------~~~~~~~~~~~-~h~~~v~~v~~----~~~~~~~l~s~~~d--- 385 (512)
+..+.+. .+.++++...++.. +++++ .++.. ...+. .....+..+.+ ++++..++++.+..
T Consensus 371 l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~-~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P 448 (751)
T 2xe4_A 371 MESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTG-LREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATP 448 (751)
T ss_dssp EEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTC-CEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEE
T ss_pred EEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCcc-ceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCC
Confidence 3344554 23455666667764 45554 22220 12221 11122444543 34664555555433
Q ss_pred CcEEEEeCCCCcc
Q 010390 386 YTVRLWSLENSRC 398 (512)
Q Consensus 386 g~i~vwd~~~~~~ 398 (512)
..+..+|+.+++.
T Consensus 449 ~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 449 NTWFDVSPQDHSR 461 (751)
T ss_dssp EEEEEECTTTCCE
T ss_pred CEEEEEECCCCcE
Confidence 4677888877653
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.46 E-value=0.00015 Score=66.87 Aligned_cols=233 Identities=7% Similarity=-0.097 Sum_probs=141.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
+|+.+. ...|+..++........+.. ...+..++|.+.++.++++-...+.|..+++........
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~------------- 110 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV------------- 110 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------------
T ss_pred eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE-------------
Confidence 444443 34588888876554443433 345889999987746666666778899998875432110
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
..........+++.+.+..++.+....+.|.+.++........ ..........++
T Consensus 111 --------------~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-----------~~~~l~~P~~ia 165 (349)
T 3v64_C 111 --------------VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-----------LWQSLEKPRAIA 165 (349)
T ss_dssp --------------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECTTCSCEEEEE
T ss_pred --------------EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE-----------EeCCCCCcceEE
Confidence 0011124577888887777777666678999999875432221 112224468899
Q ss_pred eCCCCCEEEEEe-cC-CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCCCce
Q 010390 282 QDSNGVFLTASC-MD-HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 282 ~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~~~~ 358 (512)
++|.+..|+.+. .. +.|..+++..... ..+... .......+++++++..|.. -...+.|..+++..... ...
T Consensus 166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~ 240 (349)
T 3v64_C 166 LHPMEGTIYWTDWGNTPRIEASSMDGSGR---RIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAV 240 (349)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSC---EESCCS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred EecCcCeEEEeccCCCCEEEEEeCCCCCc---EEEEEC-CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEE
Confidence 998665555544 44 7888888754221 111111 1123567999987666644 44567899999875432 222
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
....-....++++. .+ .++++-...+.|...+..+|+....
T Consensus 241 ~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~ 281 (349)
T 3v64_C 241 ISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEI 281 (349)
T ss_dssp ECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred EeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEE
Confidence 33334467788883 34 5777777788899888766665444
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.45 E-value=1.8e-05 Score=67.45 Aligned_cols=194 Identities=11% Similarity=-0.025 Sum_probs=116.0
Q ss_pred eeecccCcC--CCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc
Q 010390 142 CTGALMGHT--GSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217 (512)
Q Consensus 142 ~~~~~~~h~--~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (512)
.+.++ .|. .....+.|+. + .++.+.+.+| .|+.+|+.+++.......
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l-------------------------- 61 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEV-------------------------- 61 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEEC--------------------------
T ss_pred EEEEc-CCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeC--------------------------
Confidence 34445 354 3577899986 4 6777777754 899999998865432211
Q ss_pred cccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCe
Q 010390 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR 297 (512)
Q Consensus 218 ~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 297 (512)
............+..+......++.+.+||..+.+...+...+ . . -..++ +++..|+++..++.
T Consensus 62 --~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~---------~--~-Gwglt--~dg~~L~vSdgs~~ 125 (243)
T 3mbr_X 62 --PPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP---------G--E-GWALT--SDDSHLYMSDGTAV 125 (243)
T ss_dssp --CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS---------S--C-CCEEE--ECSSCEEEECSSSE
T ss_pred --CCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC---------C--C-ceEEe--eCCCEEEEECCCCe
Confidence 1112222223345666666668999999999998877654221 1 1 13333 56777777777899
Q ss_pred EEEEEcccCCCCceEeeeece-eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec-------------ccc
Q 010390 298 IYLYNVLQLDKGPIQHFSGCR-IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK-------------SHD 363 (512)
Q Consensus 298 i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-------------~h~ 363 (512)
|.++|..+.+........... .-..+..+.+. +|+..+..-.+..|.+.|..+++.. ..+. .-.
T Consensus 126 l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~-~~idl~~l~~~~~~~~~~~~ 203 (243)
T 3mbr_X 126 IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV-AWIDLQALVPDADALTDSTN 203 (243)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE-EEEECGGGSTTTTSCCCTTS
T ss_pred EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE-EEEECCcCccccccccCCcC
Confidence 999998764332222221111 11223334544 6665555545778999999887642 2211 112
Q ss_pred CCeEEEEeCCCCCCeEEEE
Q 010390 364 GEVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~ 382 (512)
...+.|+++|++..+++||
T Consensus 204 ~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 204 DVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp SCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEC
Confidence 4679999999884555555
No 263
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.44 E-value=0.0004 Score=62.97 Aligned_cols=237 Identities=9% Similarity=-0.051 Sum_probs=142.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
+|+.+.. ..|+..|+.+.+....+. ....+.+++|.+.++.++++-..++.|..+++.........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~------------ 68 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY------------ 68 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C------------
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc------------
Confidence 3444433 458999998876555444 34567899999876466666667789999998752100000
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
.............+++.+.+..++.+-..++.|.+++......... ..........++
T Consensus 69 -----------~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-----------~~~~~~~P~~ia 126 (316)
T 1ijq_A 69 -----------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-----------FRENGSKPRAIV 126 (316)
T ss_dssp -----------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-----------EECTTCCEEEEE
T ss_pred -----------EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE-----------EECCCCCcceEE
Confidence 0000011134578888877777776666688999999875432211 111223568899
Q ss_pred eCCCCCEEEEEecC--CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCCCce
Q 010390 282 QDSNGVFLTASCMD--HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 282 ~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~~~~ 358 (512)
++|.+..|+.+... +.|..+++... ....+.... -.....+++++++..|+. -...+.|..+++..... ...
T Consensus 127 vdp~~g~ly~~d~~~~~~I~~~~~dG~---~~~~~~~~~-~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~ 201 (316)
T 1ijq_A 127 VDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTI 201 (316)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred eCCCCCEEEEEccCCCCeEEEEcCCCC---CeEEEEECC-CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEE
Confidence 99866666555543 68888887432 222221111 234567999987766654 44567899999875332 112
Q ss_pred ecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 359 LKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 359 ~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
... .-....++++.. + .++++-...+.|..++..+++.+..
T Consensus 202 ~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~~~~~ 244 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNL 244 (316)
T ss_dssp EECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCCCEE
T ss_pred eecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCcceEE
Confidence 221 223467788843 4 6777777788999999877765443
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.42 E-value=2.3e-05 Score=77.41 Aligned_cols=329 Identities=9% Similarity=-0.029 Sum_probs=157.6
Q ss_pred CcEEEEeeC-CCcEEEEEC-CCCCCccccccccccccceeccccCCCcEEEEEEecCCCE----EEEEeCCCcEEEEeCC
Q 010390 65 SHIFAVSDE-DGYVSLFDS-RRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN----ILTASGDQTIKIWDAE 138 (512)
Q Consensus 65 ~~~latg~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~----l~s~~~dg~i~iwd~~ 138 (512)
+..+.+++. ++.|.-+|. .+++..-......... .............++++|.+.. |+.++.|+.|..+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~--~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPA--ARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGG--GGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcc--ccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 345555665 788888888 6765421110000000 0000000000122445444444 8888889999999999
Q ss_pred CCeeeecccCcC----CCEEE-EEeeCCCCCeEEEEe------CCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 139 KKKCTGALMGHT----GSIKS-LCSHPTNSDILVSGS------RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 139 ~~~~~~~~~~h~----~~v~~-l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
+|+.+....... ..+.+ ..+. + ..++.++ .+|.|+.+|.++++..-....................
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~--~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVV--K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCCEEEeecCCCCCccceeecCCEEE--C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 998876653221 01111 1111 2 3455554 3799999999988765432211100000000000000
Q ss_pred -c------cccc---ceecccccccE-EEEEEeecCCEEEEEeec---------------CCeEEEEeccCccceecccC
Q 010390 208 -S------QSKR---VSRRKAASMSI-TSVLYLKDEVSIATASAV---------------NSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 208 -~------~~~~---~~~~~~~~~~v-~~~~~~~~~~~l~~~g~~---------------dg~i~iwd~~~~~~~~~~~~ 261 (512)
. .... -.........+ ..+++.+....+++..+. .+.|..+|.++++.......
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 0 0000 00000001111 234566666666553322 14799999999988766432
Q ss_pred CCccccccccccccCeeEEEeC-CCC---CEEEEEecCCeEEEEEcccCCCCceEeeee-------c--eece-------
Q 010390 262 PHAESSSAKETRLHGISSLSQD-SNG---VFLTASCMDHRIYLYNVLQLDKGPIQHFSG-------C--RIES------- 321 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~--~~~~------- 321 (512)
.+...- .......++. +... .+| ..++.++.+|.++++|..+++..-...+.. . ....
T Consensus 297 ~~~d~w-d~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 374 (599)
T 1w6s_A 297 TPHDEW-DYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEY 374 (599)
T ss_dssp STTCSS-CCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred CCCccc-cccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeecccc
Confidence 211000 0001111111 2221 466 467778899999999986643211111000 0 0000
Q ss_pred -------------------eEEEEEECCCCCEEEEe---------------------------------c------CCCC
Q 010390 322 -------------------FYVKSEICPNASHILSG---------------------------------S------SDGN 343 (512)
Q Consensus 322 -------------------~~~~~~~s~~~~~l~~g---------------------------------~------~dg~ 343 (512)
....++++|+..++++. + ..|.
T Consensus 375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~ 454 (599)
T 1w6s_A 375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ 454 (599)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred CCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe
Confidence 00124566665555432 1 3467
Q ss_pred EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 344 i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
|..||+.+++.......+ .++..-.....+ .+++.++.||.|+.||.++|+.+-.+.
T Consensus 455 l~A~D~~tG~~~W~~~~~--~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 455 IKAYNAITGDYKWEKMER--FAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEEECTTTCCEEEEEEES--SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEeEecCC--CCccCcceEecC-CEEEEECCCCeEEEEECCCCCEEEEee
Confidence 888888887653222111 111111111234 578889999999999999999876543
No 265
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.42 E-value=1.1e-05 Score=79.78 Aligned_cols=276 Identities=10% Similarity=-0.017 Sum_probs=140.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcC----CCEEE-EEeeCCCCCeEEEEeC------CCcEEEEeCCCCCCCCC
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHT----GSIKS-LCSHPTNSDILVSGSR------DGSFAIWDLRCKSSPKS 188 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~-l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~ 188 (512)
+..|+.++.|+.|..+|..+|+.+....... ..+.+ .... + ..++.++. ++.|..+|..+++..-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--C-CEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 5678888889999999999998876654211 01111 1111 3 34555554 78999999998876543
Q ss_pred ccccceeeec----ccccccccc---cccccc---ee-cccccccEEEEEEeecCCEEEEEeec-----------C----
Q 010390 189 NCAESFVFSS----AVVKGAHLL---SQSKRV---SR-RKAASMSITSVLYLKDEVSIATASAV-----------N---- 242 (512)
Q Consensus 189 ~~~~~~~~~~----~~~~~~~~~---~~~~~~---~~-~~~~~~~v~~~~~~~~~~~l~~~g~~-----------d---- 242 (512)
.......... ......... ...... .. ..........+++.++...+++..+. +
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 2211000000 000000000 000000 00 00011111235566655555543321 1
Q ss_pred CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC---EEEEEecCCeEEEEEcccCCCCceEeeee---
Q 010390 243 SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV---FLTASCMDHRIYLYNVLQLDKGPIQHFSG--- 316 (512)
Q Consensus 243 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--- 316 (512)
+.|..+|.++++............- .......++. +....+|+ .++.++.+|.++++|..+++..-...+..
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~-d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEW-DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSS-CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred EEEEEEecCCCcEEEEecCCCCccc-ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence 3699999999888765432211000 0001111111 22224663 57778889999999976643211111110
Q ss_pred ----------cee-----------ceeE-----------EEEEECCCCCEEEEec-------------------------
Q 010390 317 ----------CRI-----------ESFY-----------VKSEICPNASHILSGS------------------------- 339 (512)
Q Consensus 317 ----------~~~-----------~~~~-----------~~~~~s~~~~~l~~g~------------------------- 339 (512)
... ...+ ..++++|+..++++..
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 000 0000 1356778777665543
Q ss_pred ------------CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 340 ------------SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 340 ------------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
.+|.|..||..+++... ... +...+.+..+...+ .+++.++.||.|+.||..+|+.+-.+.
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W-~~~-~~~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKW-TKW-EKFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEE-EEE-ESSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEE-Eec-CCCCccceeEEECC-CEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 34789999998876532 222 12222222222234 577789999999999999999876544
No 266
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.42 E-value=0.0012 Score=62.04 Aligned_cols=232 Identities=8% Similarity=-0.054 Sum_probs=137.3
Q ss_pred EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE-eCCCcEEEEeCCCC----e
Q 010390 67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA-SGDQTIKIWDAEKK----K 141 (512)
Q Consensus 67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~----~ 141 (512)
+|+.+. ...|+..+++.... ..+......+..|+|++.+..|+-+ ...+.|+.+++... .
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--------------~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~ 149 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--------------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 149 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--------------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC
T ss_pred eeEEec-cceeEEEccCCcce--------------eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc
Confidence 444444 45788888875432 1222345678999999866666544 45688999998652 2
Q ss_pred eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390 142 CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM 221 (512)
Q Consensus 142 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (512)
....+.........+++.+.+.+++++-...+.|.+.++....... .......
T Consensus 150 ~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~---------------------------l~~~~~~ 202 (400)
T 3p5b_L 150 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---------------------------LFRENGS 202 (400)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE---------------------------EEECSSC
T ss_pred ceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE---------------------------EEeCCCC
Confidence 2222332345678899988654677776777889988876432111 0111223
Q ss_pred cEEEEEEeecCCEEEEEee-cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEE
Q 010390 222 SITSVLYLKDEVSIATASA-VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIY 299 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~ 299 (512)
....+++.|.+..++.+-. ..+.|...++........ ..........|++++++..|+.+. ..+.|.
T Consensus 203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~-----------~~~~l~~P~glavd~~~~~lY~aD~~~~~I~ 271 (400)
T 3p5b_L 203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-----------VTENIQWPNGITLDLLSGRLYWVDSKLHSIS 271 (400)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE-----------ECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE-----------EECCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence 5789999997777776542 236788888775433221 111224578899998877777665 457899
Q ss_pred EEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 300 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
.+|+.......+. ...........+++. .+.++++-...+.|..++..+++.
T Consensus 272 ~~d~dG~~~~~~~--~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 272 SIDVNGGNRKTIL--EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEETTSCCCEEEE--ECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EEeCCCCccEEEE--eCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 9998543222221 111111223345552 344555656667888888666654
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.41 E-value=0.00011 Score=69.80 Aligned_cols=253 Identities=9% Similarity=0.017 Sum_probs=138.4
Q ss_pred CCcceEEEEEecCC--CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 51 TPPLAVSFCKTSKN--SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 51 ~~v~~v~~~~~s~~--~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
..+.+|++ +|+ +..|..+...+.|+.+|..++. +..+.........++|+++++++++...
T Consensus 139 ~~P~gvav---d~~s~~g~Lyv~D~~~~I~~id~~~g~--------------v~~~~~~~~~P~giavd~dG~lyVad~~ 201 (433)
T 4hw6_A 139 DNIWRMMF---DPNSNYDDLYWVGQRDAFRHVDFVNQY--------------VDIKTTNIGQCADVNFTLNGDMVVVDDQ 201 (433)
T ss_dssp SCCCEEEE---CTTTTTCEEEEECBTSCEEEEETTTTE--------------EEEECCCCSCEEEEEECTTCCEEEEECC
T ss_pred CCCceEEE---ccccCCCEEEEEeCCCCEEEEECCCCE--------------EEEeecCCCCccEEEECCCCCEEEEcCC
Confidence 34667877 884 3344444434899999986553 2333334567899999999994444331
Q ss_pred C---Cc-EEEEeCCCCee-eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 129 D---QT-IKIWDAEKKKC-TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 129 d---g~-i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
. .. +...+...+.. ...+. .-.....+++.|+++.++++-..++.|+.+|..++...... .
T Consensus 202 ~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~------~------- 267 (433)
T 4hw6_A 202 SSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE------V------- 267 (433)
T ss_dssp SCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE------E-------
T ss_pred CCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE------e-------
Confidence 1 11 33333222111 01111 12344567888844366666667788999988644320000 0
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC--ccce--ecccC--CCcccc--cccccccc
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN--LKAQ--ITQAW--PHAESS--SAKETRLH 275 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~--~~~~--~~~~~--~~~~~~--~~~~~~~~ 275 (512)
. .........++++|+++.|+++-..++.|..++... +... ..... ...... ........
T Consensus 268 -----------~-~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 335 (433)
T 4hw6_A 268 -----------M-MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLW 335 (433)
T ss_dssp -----------E-CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred -----------c-cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEc
Confidence 0 000112346999999997877776788999988653 2110 00000 000000 00011123
Q ss_pred CeeEEEe---------CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece----------------eceeEEEEEEC-
Q 010390 276 GISSLSQ---------DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR----------------IESFYVKSEIC- 329 (512)
Q Consensus 276 ~i~~~~~---------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~s- 329 (512)
....+++ .+++.++++-...+.|+.++.. ..+..+.+.. .-.....++++
T Consensus 336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~----G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE----GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT----SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred CCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC----CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 4667888 7777777776677899999842 1222222210 01235668888
Q ss_pred CCCCEEEEecCCCCEEEEecC
Q 010390 330 PNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 330 ~~~~~l~~g~~dg~i~iw~~~ 350 (512)
+++.++++-..++.|+.++++
T Consensus 412 ~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEecC
Confidence 667666666667778887754
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=9.6e-05 Score=70.23 Aligned_cols=250 Identities=11% Similarity=0.096 Sum_probs=138.1
Q ss_pred CcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-C
Q 010390 52 PPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-D 129 (512)
Q Consensus 52 ~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-d 129 (512)
.+..|++ +| ++..|.++...+.|+.+|.++.. +..+.........++|++++++|+.+.. +
T Consensus 138 ~P~~lav---dp~~~g~Lyv~d~~~~I~~id~~~~~--------------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~ 200 (430)
T 3tc9_A 138 GAVWLSF---DPKNHNHLYLVGEQHPTRLIDFEKEY--------------VSTVYSGLSKVRTICWTHEADSMIITNDQN 200 (430)
T ss_dssp CCCEEEE---ETTEEEEEEEEEBTEEEEEEETTTTE--------------EEEEECCCSCEEEEEECTTSSEEEEEECCS
T ss_pred CCCEEEE---CCCCCCeEEEEeCCCcEEEEECCCCE--------------EEEEecCCCCcceEEEeCCCCEEEEEeCCC
Confidence 4566776 87 45556666555889999987643 2222234567889999999996666554 2
Q ss_pred C----cEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 130 Q----TIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 130 g----~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
+ .+.+.+ ..+... ..+. .......++++|+++.++++-..++.|..++.........
T Consensus 201 ~~~~~~v~~~~-~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~--------------- 263 (430)
T 3tc9_A 201 NNDRPNNYILT-RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL--------------- 263 (430)
T ss_dssp CTTSEEEEEEE-GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE---------------
T ss_pred CcccceEEEEe-CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE---------------
Confidence 2 233344 333221 2222 1234567889995447777766778999999874321000
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce----ecccC--CCcccc--cccccccc
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ----ITQAW--PHAESS--SAKETRLH 275 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~----~~~~~--~~~~~~--~~~~~~~~ 275 (512)
...........++++|+++.++++...++.|..++.+..... ..... ...... ........
T Consensus 264 -----------~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 332 (430)
T 3tc9_A 264 -----------FTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH 332 (430)
T ss_dssp -----------EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS
T ss_pred -----------EEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeC
Confidence 000111346789999999977777767889999887642111 00000 000000 00000111
Q ss_pred Cee-EEEeC--------CCCCEEEEEecCCeEEEEEcccCCCCceEeeeec---------e-------eceeEEEEEECC
Q 010390 276 GIS-SLSQD--------SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC---------R-------IESFYVKSEICP 330 (512)
Q Consensus 276 ~i~-~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~-------~~~~~~~~~~s~ 330 (512)
... .++.. +++.+.++-...+.|+.++.. ..+..+.+. . .-.....+++++
T Consensus 333 ~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~----G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 408 (430)
T 3tc9_A 333 APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ----GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE 408 (430)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT----SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred CCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC----CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence 222 44443 445555555566788888732 122222221 0 012456789998
Q ss_pred C-CCEEEEecCCCCEEEEecC
Q 010390 331 N-ASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 331 ~-~~~l~~g~~dg~i~iw~~~ 350 (512)
+ +.++++-..++.|+.++++
T Consensus 409 ~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 409 ERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEccC
Confidence 4 6666666666778887754
No 269
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.38 E-value=1.7e-05 Score=80.00 Aligned_cols=257 Identities=12% Similarity=0.122 Sum_probs=134.9
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC------CCcEEEEeCC
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG------DQTIKIWDAE 138 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------dg~i~iwd~~ 138 (512)
+..+++++.||.|..+|..+++..-....... .........++. .++ .++.+.. +|.|..+|..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~----~~~~~~~~~P~v-----~~~-~v~vg~~~~~~~~~g~v~a~D~~ 186 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP----AKPYSITGAPRV-----VKG-KVIIGNGGAEYGVRGFVSAYDAD 186 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCT----TSSCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCC----CCcceecCCCEE-----ECC-EEEEeCCCCCcCCCCEEEEEECC
Confidence 45788888899999999988764211100000 000000111211 134 4554433 5899999999
Q ss_pred CCeeeecccCcC-------------------------------CCEEEEEeeCCCCCeEEEEeCCCc-------------
Q 010390 139 KKKCTGALMGHT-------------------------------GSIKSLCSHPTNSDILVSGSRDGS------------- 174 (512)
Q Consensus 139 ~~~~~~~~~~h~-------------------------------~~v~~l~~~~~~~~~l~s~~~dg~------------- 174 (512)
+|+.+..+.... .....+++.|+. .+++.+..++.
T Consensus 187 tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd 265 (668)
T 1kv9_A 187 TGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGD 265 (668)
T ss_dssp TCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCC
T ss_pred CCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCC
Confidence 999877664210 011236777776 67777776653
Q ss_pred ------EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC--EEEEEeecCCeEE
Q 010390 175 ------FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV--SIATASAVNSIVK 246 (512)
Q Consensus 175 ------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~g~~dg~i~ 246 (512)
|..+|..+++..-...... + ..... ....+........+++ .+++.++.+|.++
T Consensus 266 ~l~~~~v~AlD~~tG~~~W~~~~~~-----------~------~~wd~-~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~ 327 (668)
T 1kv9_A 266 NLYLSSILAIRPDTGKLAWHYQVTP-----------G------DSWDF-TATQQITLAELNIDGKPRKVLMQAPKNGFFY 327 (668)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESST-----------T------CCSCC-CCCSCEEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred ceeeeeEEEEcCCCCceeeEeecCC-----------C------ccccc-cCCCCcEEEEeccCCcEEEEEEEECCCCEEE
Confidence 8888888776433221100 0 00000 0011222223333554 2344567899999
Q ss_pred EEeccCccceecccCCCc-----------ccc----ccccc--------c--ccCeeEEEeCCCCCEEEEEe--------
Q 010390 247 FWDTRNLKAQITQAWPHA-----------ESS----SAKET--------R--LHGISSLSQDSNGVFLTASC-------- 293 (512)
Q Consensus 247 iwd~~~~~~~~~~~~~~~-----------~~~----~~~~~--------~--~~~i~~~~~~~~~~~l~~~~-------- 293 (512)
++|..+++.+........ .+. ..... . ...-..++++|+..++++..
T Consensus 328 ~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~ 407 (668)
T 1kv9_A 328 VLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYR 407 (668)
T ss_dssp EEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEC
T ss_pred EEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEee
Confidence 999999887633221110 000 00000 0 00012367777766655421
Q ss_pred ----------------------------cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEE
Q 010390 294 ----------------------------MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAY 345 (512)
Q Consensus 294 ----------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 345 (512)
.+|.|..||+.+++.. -...... ......+...+.+++.|+.|+.++
T Consensus 408 ~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~--W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~ 482 (668)
T 1kv9_A 408 NEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA--WKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMH 482 (668)
T ss_dssp CCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE--EEEEESS---SCCCCEEEETTTEEEEECTTSEEE
T ss_pred eeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEE--EEccCCC---CCcCceeEeCCCEEEEECCcccch
Confidence 2377888998664322 1111110 111122334678888999999999
Q ss_pred EEecCCCCCC
Q 010390 346 VWQVNKPQAD 355 (512)
Q Consensus 346 iw~~~~~~~~ 355 (512)
.||..+++..
T Consensus 483 a~d~~tG~~l 492 (668)
T 1kv9_A 483 AYSADKGEAL 492 (668)
T ss_dssp EEETTTCCEE
T ss_pred hhhhhcChhh
Confidence 9999988763
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.37 E-value=0.00016 Score=67.69 Aligned_cols=234 Identities=7% Similarity=-0.102 Sum_probs=143.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
.+|+.+. ...|+..++........+.. ...+..++|.+.++.++++-...+.|..+++.......
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~------------- 152 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE------------- 152 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------
T ss_pred ceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------
Confidence 3444443 45688889877654444433 34688999998764666666677889999887543111
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
...........+++.+.+..++.+....+.|.+.++........ ..........+
T Consensus 153 --------------~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l-----------~~~~l~~P~gi 207 (386)
T 3v65_B 153 --------------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-----------LWQSLEKPRAI 207 (386)
T ss_dssp --------------EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE-----------ECSSCSCEEEE
T ss_pred --------------EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe-----------ecCCCCCCcEE
Confidence 00011124567888887777777666677888888765432211 11222456889
Q ss_pred EeCCCCCEEEEEe-cC-CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE-EecCCCCEEEEecCCCCCCCc
Q 010390 281 SQDSNGVFLTASC-MD-HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL-SGSSDGNAYVWQVNKPQADPI 357 (512)
Q Consensus 281 ~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~ 357 (512)
+++|.+..|+.+. .. +.|..+++.... ...+.... ......++++|++..|+ +-...+.|..+++..... ..
T Consensus 208 avdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~ 282 (386)
T 3v65_B 208 ALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KA 282 (386)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EE
T ss_pred EEEcCCCeEEEeccCCCCEEEEEeCCCCC---cEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EE
Confidence 9998766666554 33 688888875422 11221111 12356799998766554 445567899999875432 22
Q ss_pred eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
..........++++ ..+ .++++-...+.|..++..+++....
T Consensus 283 ~~~~~~~~P~giav-~~~-~ly~td~~~~~V~~~~~~~G~~~~~ 324 (386)
T 3v65_B 283 VISQGLPHPFAITV-FED-SLYWTDWHTKSINSANKFTGKNQEI 324 (386)
T ss_dssp EECSSCSSEEEEEE-ETT-EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred EEECCCCCceEEEE-ECC-EEEEeeCCCCeEEEEECCCCcceEE
Confidence 33333446778888 334 5777777888999999767765544
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.36 E-value=9.3e-06 Score=82.12 Aligned_cols=249 Identities=8% Similarity=-0.008 Sum_probs=130.1
Q ss_pred EEEEec-CCCEEEEEeCCC-----------cEEEEeCCCCeeee--ccc-CcCCCEEEEEeeCCCCCeEEEEeC-CCcEE
Q 010390 113 DLCWIK-EDTNILTASGDQ-----------TIKIWDAEKKKCTG--ALM-GHTGSIKSLCSHPTNSDILVSGSR-DGSFA 176 (512)
Q Consensus 113 ~l~~s~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~--~~~-~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~ 176 (512)
.+++.+ +++.++.|+.+. .+.+||..+++... .+. .+.....++++..++ .+++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceE
Confidence 556777 888888887643 58899998875432 221 122333456677776 88888884 45899
Q ss_pred EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-----CeEEEEecc
Q 010390 177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-----SIVKFWDTR 251 (512)
Q Consensus 177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-----g~i~iwd~~ 251 (512)
+||..+.+-.... .... ...-.+++..++++.+++.|..+ ..+.+||..
T Consensus 269 ~yd~~t~~W~~~~-------------------------~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 269 LYDSSSDSWIPGP-------------------------DMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EEEGGGTEEEECC-------------------------CCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred EecCcCCceeECC-------------------------CCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 9998754311100 0000 11112345556788777755233 468999998
Q ss_pred CccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---------CeEEEEEcccCCCCceEeeeecee---
Q 010390 252 NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---------HRIYLYNVLQLDKGPIQHFSGCRI--- 319 (512)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~--- 319 (512)
+.+-......... + ...... ...+..++..++.++.+ ..+..||...... .........
T Consensus 323 t~~W~~~~~~~~~-p---~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~ 393 (656)
T 1k3i_A 323 SKTWTSLPNAKVN-P---MLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRG 393 (656)
T ss_dssp TTEEEEETTSCSG-G---GCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTE
T ss_pred CCcceeCCCcccc-c---cccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccc
Confidence 7653321100000 0 000000 01122344444555444 4567788754321 111111111
Q ss_pred ----ceeEEEEEEC-CCCCEEEEecCCC-----------CEEEEecCCCCCCCcee---ccccCC-eEEEEeCCCCCCeE
Q 010390 320 ----ESFYVKSEIC-PNASHILSGSSDG-----------NAYVWQVNKPQADPIKL---KSHDGE-VTAVNWCPNEAGKI 379 (512)
Q Consensus 320 ----~~~~~~~~~s-~~~~~l~~g~~dg-----------~i~iw~~~~~~~~~~~~---~~h~~~-v~~v~~~~~~~~~l 379 (512)
...-.++.|. .++++++.|+.++ .|.+||..+..-. .. ..+... -.+++..|++ +++
T Consensus 394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~--~~~~~~mp~~R~~~~~~~l~~g-~i~ 470 (656)
T 1k3i_A 394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT--VFASNGLYFARTFHTSVVLPDG-STF 470 (656)
T ss_dssp ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE--EECTTCCSSCCBSCEEEECTTS-CEE
T ss_pred cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee--EEccCCCCCCcccCCeEECCCC-CEE
Confidence 0112233443 4678888887532 5777777654321 11 111121 2334566788 899
Q ss_pred EEEeCC-----------CcEEEEeCCCCcccc
Q 010390 380 VTSSDD-----------YTVRLWSLENSRCSS 400 (512)
Q Consensus 380 ~s~~~d-----------g~i~vwd~~~~~~~~ 400 (512)
+.||.+ ..+.+||..+++...
T Consensus 471 v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 471 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp EECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred EECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence 998854 468899998776544
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.35 E-value=9.6e-05 Score=62.94 Aligned_cols=199 Identities=8% Similarity=-0.003 Sum_probs=115.4
Q ss_pred CccCC--cceEEEEEecCCCcEEEEeeCC--CcEEEEECCCCCCccccccccccccceeccccCCCcE--EEEEEecCCC
Q 010390 48 GEETP--PLAVSFCKTSKNSHIFAVSDED--GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAI--FDLCWIKEDT 121 (512)
Q Consensus 48 gh~~~--v~~v~~~~~s~~~~~latg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V--~~l~~s~~~~ 121 (512)
.|... ...+.| ++ +.+..+.+.+ ..|+.+|+++++. +....-. ... -.+.. .++
T Consensus 16 phd~~~ftqGL~~---~~-~~LyestG~~g~S~v~~vD~~tgkv-------------~~~~~l~-~~~fgeGi~~--~~~ 75 (243)
T 3mbr_X 16 PHDTTAFTEGLFY---LR-GHLYESTGETGRSSVRKVDLETGRI-------------LQRAEVP-PPYFGAGIVA--WRD 75 (243)
T ss_dssp ECCTTCCEEEEEE---ET-TEEEEEECCTTSCEEEEEETTTCCE-------------EEEEECC-TTCCEEEEEE--ETT
T ss_pred CCCCccccccEEE---EC-CEEEEECCCCCCceEEEEECCCCCE-------------EEEEeCC-CCcceeEEEE--eCC
Confidence 56544 448888 54 5555665654 4899999998754 2222111 122 22333 344
Q ss_pred EEE-EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 122 NIL-TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 122 ~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
.|. ....++.+.+||..+.+.+.++.... .-+.++ +++..++++ ..++.|.++|..+.+........
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~-------- 143 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVT-------- 143 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECE--------
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEc--------
Confidence 454 45568999999999999998887433 224554 456344444 55789999998876543221110
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc--cccccCee
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK--ETRLHGIS 278 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~ 278 (512)
.....-..++.+.|. ++. +++....+..|.+.|..+++...........+.... .....-.+
T Consensus 144 --------------~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlN 207 (243)
T 3mbr_X 144 --------------AGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLN 207 (243)
T ss_dssp --------------ETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEE
T ss_pred --------------cCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceE
Confidence 000001234555654 554 444444677999999999887765543221110000 11223578
Q ss_pred EEEeCCCCCEEEEEec
Q 010390 279 SLSQDSNGVFLTASCM 294 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~ 294 (512)
.++++|+++.|++.+.
T Consensus 208 GIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 208 GIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEEET
T ss_pred EEEEcCCCCEEEEECC
Confidence 8999998877766653
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00017 Score=68.44 Aligned_cols=243 Identities=7% Similarity=-0.010 Sum_probs=136.5
Q ss_pred cEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCC-eEEEEeCCC----cEEEEeCCCC
Q 010390 110 AIFDLCWIK-EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSD-ILVSGSRDG----SFAIWDLRCK 183 (512)
Q Consensus 110 ~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~dg----~i~vwd~~~~ 183 (512)
....|+++| ++..|+.+...+.|+.+|+.++....... .......|+|++++ + ++++...++ .+.+.+. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEEeC-CC
Confidence 457889998 45667666655889999998776544333 44568899999988 6 444443322 2333332 22
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
..... ..+ ........++++|++..++++...++.|..++..........
T Consensus 215 ~~~~~-------------------------~~l-~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~---- 264 (430)
T 3tc9_A 215 GFKVI-------------------------TEL-TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF---- 264 (430)
T ss_dssp TSCSE-------------------------EEE-EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE----
T ss_pred ceeee-------------------------eee-ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE----
Confidence 11100 000 012345678899954455555556789999998865432110
Q ss_pred ccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCC--CceEeeeec------e-------eceeEE-EE
Q 010390 264 AESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDK--GPIQHFSGC------R-------IESFYV-KS 326 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~--~~~~~~~~~------~-------~~~~~~-~~ 326 (512)
..........++++|++++|+.+ ...+.|..++...... .....+.+. . .-.... .+
T Consensus 265 ------~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv 338 (430)
T 3tc9_A 265 ------TIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGT 338 (430)
T ss_dssp ------ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEE
T ss_pred ------EcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceE
Confidence 11111346789999999965555 4678899988653211 011111111 0 000112 24
Q ss_pred EE--------CCCCCEEEEecCCCCEEEEecCCCCCCCceeccc------------------cCCeEEEEeCCCCCCeEE
Q 010390 327 EI--------CPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH------------------DGEVTAVNWCPNEAGKIV 380 (512)
Q Consensus 327 ~~--------s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h------------------~~~v~~v~~~~~~~~~l~ 380 (512)
+. .+++.++++-...+.|+.++.. +.. ..+.+. -.....|++.+++..+++
T Consensus 339 ~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~v--~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyV 415 (430)
T 3tc9_A 339 FVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GRV--TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFI 415 (430)
T ss_dssp EEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SEE--EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEE
T ss_pred EEccccccccCCCCeEEEEECCCcEEEEECCC-CcE--EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEE
Confidence 44 2446666666666778888742 221 122111 125788999985325666
Q ss_pred EEeCCCcEEEEeCC
Q 010390 381 TSSDDYTVRLWSLE 394 (512)
Q Consensus 381 s~~~dg~i~vwd~~ 394 (512)
+-.....|+..+++
T Consensus 416 aD~~n~rIr~i~~e 429 (430)
T 3tc9_A 416 GDRENRRIRKIGYE 429 (430)
T ss_dssp EEGGGTEEEEEEEC
T ss_pred EECCCCeEEEEccC
Confidence 66667788887764
No 274
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.34 E-value=9.5e-05 Score=73.10 Aligned_cols=279 Identities=8% Similarity=-0.073 Sum_probs=141.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCC----CEE-EEEeeCC---CCCeEEEEe------CCCcEEEEeCCCCCC
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTG----SIK-SLCSHPT---NSDILVSGS------RDGSFAIWDLRCKSS 185 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~----~v~-~l~~~~~---~~~~l~s~~------~dg~i~vwd~~~~~~ 185 (512)
+..|+.++.|+.|.-+|..+|+.+........ .+. +.....+ +...++.++ .++.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 55788888999999999999998766543210 111 1111111 111566655 378999999998876
Q ss_pred CCCccccceeeeccc--------ccccccccc------cccceecccccccEEEEEEeecCCEEEEEeec----------
Q 010390 186 PKSNCAESFVFSSAV--------VKGAHLLSQ------SKRVSRRKAASMSITSVLYLKDEVSIATASAV---------- 241 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~--------~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~---------- 241 (512)
.-............. ..+...... .+...........-..+++.++...+++..+.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 542211100000000 000000000 00000000111112346677776666653321
Q ss_pred ---------C----CeEEEEeccCccceecccCCCccccccccccccCeeEEEeC-CCCC---EEEEEecCCeEEEEEcc
Q 010390 242 ---------N----SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD-SNGV---FLTASCMDHRIYLYNVL 304 (512)
Q Consensus 242 ---------d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~ 304 (512)
| +.|..+|..+++........+...- .......++. +... .+|+ .++.++.+|.++++|..
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~w-d~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAW-DFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCS-CCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcc-cccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 6899999999998876533211000 0001111221 1221 4663 78888999999999976
Q ss_pred cCCCCceEeeee-------------c-----------------eecee-----------EEEEEECCCCCEEEEec----
Q 010390 305 QLDKGPIQHFSG-------------C-----------------RIESF-----------YVKSEICPNASHILSGS---- 339 (512)
Q Consensus 305 ~~~~~~~~~~~~-------------~-----------------~~~~~-----------~~~~~~s~~~~~l~~g~---- 339 (512)
+++..-...+.. . ..... ...++++|+...+++..
T Consensus 355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 543211111100 0 00000 01246667655554422
Q ss_pred -----------------------------CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390 340 -----------------------------SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL 390 (512)
Q Consensus 340 -----------------------------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 390 (512)
.+|.|..||+.+++........ .++..-.....+ .+++.++.||.++.
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tag-glvf~g~~dg~l~A 511 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAG-NLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETT-TEEEEECTTSEEEE
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--CCCcccceEeCC-CEEEEECCCCcEEE
Confidence 2577899999888763222111 122111111134 57888999999999
Q ss_pred EeCCCCccccccc
Q 010390 391 WSLENSRCSSMRS 403 (512)
Q Consensus 391 wd~~~~~~~~~~~ 403 (512)
||.++|+.+-.+.
T Consensus 512 ~D~~tG~~lW~~~ 524 (582)
T 1flg_A 512 FDAKSGKELWKFQ 524 (582)
T ss_dssp EETTTCCEEEEEE
T ss_pred EECCCCCEEEEec
Confidence 9999999876543
No 275
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.31 E-value=3.3e-05 Score=76.30 Aligned_cols=73 Identities=8% Similarity=0.102 Sum_probs=41.7
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC------CCcEEEEeCC
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG------DQTIKIWDAE 138 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------dg~i~iwd~~ 138 (512)
+..+++++.|+.|..+|..+++..-....... .........++ .. ++ .++.++. ++.|..+|..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~----~~~~~~~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~ 184 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDP----KVGSTLTQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLK 184 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCG----GGTCBCCSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETT
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCC----CccceeccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECC
Confidence 55777888899999999988754221100000 00000011121 11 34 4555544 7899999999
Q ss_pred CCeeeeccc
Q 010390 139 KKKCTGALM 147 (512)
Q Consensus 139 ~~~~~~~~~ 147 (512)
+|+.+..+.
T Consensus 185 tG~~~W~~~ 193 (571)
T 2ad6_A 185 TGELKWRAF 193 (571)
T ss_dssp TCCEEEEEE
T ss_pred CCcEEEEEc
Confidence 998876554
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.27 E-value=0.00051 Score=65.22 Aligned_cols=244 Identities=7% Similarity=-0.006 Sum_probs=138.7
Q ss_pred CcEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---Cc-EEEEeCCC
Q 010390 109 NAIFDLCWIKE--DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GS-FAIWDLRC 182 (512)
Q Consensus 109 ~~V~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~-i~vwd~~~ 182 (512)
.....|+|.|+ +..|+.+...+.|+.+|..+++...... .......+++++++ +++++.... .. +...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECCC
Confidence 34678999984 4456555544889999998877654433 44568999999998 555554321 11 22222211
Q ss_pred CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP 262 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~ 262 (512)
.. .. . ...........+++++++..++++...++.|+.+|..++.......
T Consensus 217 ~~-~~----------------------~----~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-- 267 (433)
T 4hw6_A 217 GF-TE----------------------R----LSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-- 267 (433)
T ss_dssp TT-CC----------------------E----EEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE--
T ss_pred Ce-ec----------------------c----ccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe--
Confidence 10 00 0 0001123456788888444455545567889999987655411110
Q ss_pred CccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCC--CceEeeeec-e------------eceeEEEE
Q 010390 263 HAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDK--GPIQHFSGC-R------------IESFYVKS 326 (512)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~-~------------~~~~~~~~ 326 (512)
.......-..++++|+++.|+.+. ..+.|+.++...... .....+.+. . .-.....+
T Consensus 268 -------~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gi 340 (433)
T 4hw6_A 268 -------MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQG 340 (433)
T ss_dssp -------ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEE
T ss_pred -------ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccE
Confidence 000111234699999999666554 568899988643211 111122111 0 01224568
Q ss_pred EE---------CCCCCEEEEecCCCCEEEEecCCCCCCCceeccc------------------cCCeEEEEeC-CCCCCe
Q 010390 327 EI---------CPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH------------------DGEVTAVNWC-PNEAGK 378 (512)
Q Consensus 327 ~~---------s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h------------------~~~v~~v~~~-~~~~~~ 378 (512)
++ .+++.++++-...+.|+.++.. +.. ..+.+. -.....|++. +++ .+
T Consensus 341 av~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v--~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~l 416 (433)
T 4hw6_A 341 IFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRV--TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CF 416 (433)
T ss_dssp EEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEE--EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EE
T ss_pred EEEccccccccCCCCcEEEEECCCCEEEEECCC-CCE--EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EE
Confidence 88 7778877777777889998853 221 122111 1246788998 555 56
Q ss_pred EEEEeCCCcEEEEeCC
Q 010390 379 IVTSSDDYTVRLWSLE 394 (512)
Q Consensus 379 l~s~~~dg~i~vwd~~ 394 (512)
+++=...+.|+..+++
T Consensus 417 yVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 417 YIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCEEEEEecC
Confidence 6666667788887764
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.26 E-value=0.00036 Score=63.23 Aligned_cols=229 Identities=7% Similarity=-0.092 Sum_probs=139.9
Q ss_pred CCcEEEEeCCCCe-eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 129 DQTIKIWDAEKKK-CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 129 dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
...|+..++.... ....+......+.+++|.+.++.++++-...+.|..+++.........
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~------------------ 73 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV------------------ 73 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE------------------
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE------------------
Confidence 4568999987653 111111122356789999876466667667788999988755321100
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
....-.....+++.+.+..++.+-...+.|.++++........ ..........++++|.+.
T Consensus 74 --------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-----------~~~~~~~P~giavdp~~g 134 (318)
T 3sov_A 74 --------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-----------FWQELDQPRAIALDPSSG 134 (318)
T ss_dssp --------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECSSCSSEEEEEEEGGGT
T ss_pred --------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE-----------EeCCCCCccEEEEeCCCC
Confidence 0011124667888877777776666678999999875432211 112224467899998766
Q ss_pred EEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCCCceeccccC
Q 010390 288 FLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQADPIKLKSHDG 364 (512)
Q Consensus 288 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~~~~~~~h~~ 364 (512)
.|+.+. ..+.|...++.... ...+.... -.....+++++++..|+. -...+.|..++++.... .....+...
T Consensus 135 ~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~-l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~ 209 (318)
T 3sov_A 135 FMYWTDWGEVPKIERAGMDGSS---RFIIINSE-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLP 209 (318)
T ss_dssp EEEEEECSSSCEEEEEETTSCS---CEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCS
T ss_pred EEEEEecCCCCEEEEEEcCCCC---eEEEEECC-CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCC
Confidence 666655 25788888875322 11221111 123457999997666644 45567899999875432 222333345
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 365 EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 365 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
...++++..+ .++++-...+.|..++..+|+....
T Consensus 210 ~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 210 HPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE 244 (318)
T ss_dssp CEEEEEEETT--EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred CceEEEEeCC--EEEEEecCCCeEEEEECCCCCceEE
Confidence 5677887533 5777777788999999987775443
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.23 E-value=0.00043 Score=59.80 Aligned_cols=215 Identities=8% Similarity=0.016 Sum_probs=125.8
Q ss_pred cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390 145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT 224 (512)
Q Consensus 145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (512)
.+.+-...+..++|.|+++.++++...++.|...|.. ++..... .+ .......
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-------------------------~l-~g~~D~E 73 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-------------------------PL-DFVKDLE 73 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-------------------------EC-SSCSSEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-------------------------ec-CCCCChH
Confidence 3445556899999999875666667788888888886 3321111 00 1124678
Q ss_pred EEEEeecCCEEEEEeecCCeEEEEeccCcccee---cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390 225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI---TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301 (512)
Q Consensus 225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 301 (512)
.+++.+++.++++ ...++.+.++++....... ....+. ...........++++|.++.|+++.......+|
T Consensus 74 GIa~~~~g~~~vs-~E~~~~l~~~~v~~~~~i~~~~~~~~~~-----~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~ 147 (255)
T 3qqz_A 74 TIEYIGDNQFVIS-DERDYAIYVISLTPNSEVKILKKIKIPL-----QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVY 147 (255)
T ss_dssp EEEECSTTEEEEE-ETTTTEEEEEEECTTCCEEEEEEEECCC-----SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEE
T ss_pred HeEEeCCCEEEEE-ECCCCcEEEEEcCCCCeeeeeeeecccc-----ccccccCCcceEEEeCCCCEEEEEECcCCceEE
Confidence 8888888865554 4457789999877654311 110000 012334568999999999888877766555555
Q ss_pred EcccCCC-CceEeeee-----ceeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceec-cc------cCCeE
Q 010390 302 NVLQLDK-GPIQHFSG-----CRIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLK-SH------DGEVT 367 (512)
Q Consensus 302 d~~~~~~-~~~~~~~~-----~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-~h------~~~v~ 367 (512)
.+..... ..+..... .........++++|. +++++.......+.++|..........+. +. -..--
T Consensus 148 ~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpE 227 (255)
T 3qqz_A 148 KVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAE 227 (255)
T ss_dssp EEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEE
T ss_pred EEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCC
Confidence 5532111 11111111 001112456888886 45556666677888888765422111222 11 12568
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 368 AVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
.|+|.++| +++++ ++.+.++++.-.
T Consensus 228 Gia~d~~G-~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 228 GVAMDASG-NIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp EEEECTTC-CEEEE-ETTTEEEEEEC-
T ss_pred eeEECCCC-CEEEE-cCCceEEEEEec
Confidence 89999999 65555 666666666543
No 279
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.19 E-value=0.00028 Score=69.77 Aligned_cols=83 Identities=7% Similarity=0.054 Sum_probs=44.7
Q ss_pred CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccC-CeEEEEeCC
Q 010390 295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDG-EVTAVNWCP 373 (512)
Q Consensus 295 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~-~v~~v~~~~ 373 (512)
+|.|..||+.+++..-........... .....+.+++.|+.||.++.||.++++.. ..+....+ .-.-+.|..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g-----~~~tagglvf~g~~dg~l~A~D~~tG~~l-W~~~~~~g~~a~P~~y~~ 538 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAG-----VLATAGNLVFTGTGDGYFKAFDAKSGKEL-WKFQTGSGIVSPPITWEQ 538 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSC-----CEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCccc-----ceEeCCCEEEEECCCCcEEEEECCCCCEE-EEecCCCCcccCceEEEE
Confidence 577888887664322111111110011 11124667888999999999999998874 33332221 112255656
Q ss_pred CCCCeEEEEe
Q 010390 374 NEAGKIVTSS 383 (512)
Q Consensus 374 ~~~~~l~s~~ 383 (512)
+|..++++.+
T Consensus 539 ~G~qYv~~~~ 548 (582)
T 1flg_A 539 DGEQYLGVTV 548 (582)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEc
Confidence 7744555443
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.17 E-value=0.0011 Score=57.24 Aligned_cols=219 Identities=9% Similarity=0.093 Sum_probs=128.0
Q ss_pred ecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCCCE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~ 122 (512)
.+.|-.+.+.++++ .|+++ ++|+...++.|...|.. +.. +..+. +-....-.|++.+++.+
T Consensus 21 ~l~g~~~~lSGla~---~~~~~~L~aV~d~~~~I~~ld~~-g~v-------------~~~i~l~g~~D~EGIa~~~~g~~ 83 (255)
T 3qqz_A 21 EIAGITNNISSLTW---SAQSNTLFSTINKPAAIVEMTTN-GDL-------------IRTIPLDFVKDLETIEYIGDNQF 83 (255)
T ss_dssp ECTTCCSCEEEEEE---ETTTTEEEEEEETTEEEEEEETT-CCE-------------EEEEECSSCSSEEEEEECSTTEE
T ss_pred ECCCcccCcceeEE---eCCCCEEEEEECCCCeEEEEeCC-CCE-------------EEEEecCCCCChHHeEEeCCCEE
Confidence 44555566888888 77665 55667888899999986 322 22221 12256788899888877
Q ss_pred EEEEeCCCcEEEEeCCCCee---eecc------cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 123 ILTASGDQTIKIWDAEKKKC---TGAL------MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~---~~~~------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
+++.-.++.+.++++..... +... ...+.....|+|.|.+ +.|+++.......+|.+.. ....... .
T Consensus 84 ~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g--~~~~~~l-~ 159 (255)
T 3qqz_A 84 VISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNG--LLSSNEL-H 159 (255)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEES--TTCSSCC-E
T ss_pred EEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcc--cccCCce-e
Confidence 67665678899988765432 1111 1234567899999988 5555555544556665541 1000000 0
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
....... .....-..+.+++++|....+++.+..+..|..+|.... ........... ..+...
T Consensus 160 i~~~~~~--------------~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~--~~l~~~ 222 (255)
T 3qqz_A 160 ISKDKAL--------------QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGS--RGLSHN 222 (255)
T ss_dssp EEECHHH--------------HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTG--GGCSSC
T ss_pred eecchhh--------------ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCcc--CCcccc
Confidence 0000000 000112357899999988888777878899999997754 33222111100 001111
Q ss_pred ccCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 010390 274 LHGISSLSQDSNGVFLTASCMDHRIYLYN 302 (512)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 302 (512)
......|+++++|++.+ .+..+.++.+.
T Consensus 223 ~~qpEGia~d~~G~lyI-vsE~n~~y~f~ 250 (255)
T 3qqz_A 223 IKQAEGVAMDASGNIYI-VSEPNRFYRFT 250 (255)
T ss_dssp CCSEEEEEECTTCCEEE-EETTTEEEEEE
T ss_pred cCCCCeeEECCCCCEEE-EcCCceEEEEE
Confidence 23567899999998444 46667666665
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.16 E-value=0.0028 Score=64.66 Aligned_cols=207 Identities=8% Similarity=-0.058 Sum_probs=121.1
Q ss_pred CCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390 107 HQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 181 (512)
....+..|+|.+....|+ +-...+.|+.+++... .....+.........|++.+.+.+++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 446788999998555555 5555678999998753 22223332334567888888775677777778899999987
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-CeEEEEeccCccceeccc
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQA 260 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~ 260 (512)
...... ...........|++.|.+..|+.+-..+ +.|...++........
T Consensus 502 G~~~~~---------------------------l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l-- 552 (791)
T 3m0c_C 502 GVKRKT---------------------------LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-- 552 (791)
T ss_dssp SSSEEE---------------------------EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE--
T ss_pred CCeEEE---------------------------EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE--
Confidence 432111 0111223578999999877777654323 6788888875433221
Q ss_pred CCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390 261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 339 (512)
..........|++++.+..|+.+. ..+.|..+++.......+ ............+++.. +.++++-.
T Consensus 553 ---------v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v--~~~~~~l~~P~glav~~-~~lYwtD~ 620 (791)
T 3m0c_C 553 ---------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI--LEDEKRLAHPFSLAVFE-DKVFWTDI 620 (791)
T ss_dssp ---------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--EECTTTTSSEEEEEEET-TEEEEEET
T ss_pred ---------EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE--ecCCCccCCCCEEEEeC-CEEEEEEC
Confidence 112224578899998777676665 457899999854322221 12111111233455532 23444445
Q ss_pred CCCCEEEEecCCCCC
Q 010390 340 SDGNAYVWQVNKPQA 354 (512)
Q Consensus 340 ~dg~i~iw~~~~~~~ 354 (512)
..+.|...+..+++.
T Consensus 621 ~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 621 INEAIFSANRLTGSD 635 (791)
T ss_dssp TTTEEEEEETTTCCC
T ss_pred CCCEEEEEeCCCCcc
Confidence 556777777666544
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.16 E-value=0.0019 Score=60.61 Aligned_cols=238 Identities=9% Similarity=-0.054 Sum_probs=144.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
.+|+.+. ...|+..++........+. ....+..|+|.+.++.++++-...+.|+.+++.........
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~----------- 150 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY----------- 150 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC-----------
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc-----------
Confidence 3455443 4678999987765444443 44578899999877466666666788988888643210000
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
.............+++.+.+..|+.+-...+.|.+.+++....... ..........+
T Consensus 151 ------------~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-----------~~~~~~~P~~i 207 (400)
T 3p5b_L 151 ------------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-----------FRENGSKPRAI 207 (400)
T ss_dssp ------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-----------EECSSCCEEEE
T ss_pred ------------eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEE-----------EeCCCCCcceE
Confidence 0011112235778899887777777666778999998875543221 11122347889
Q ss_pred EeCCCCCEEEEEec--CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCCc
Q 010390 281 SQDSNGVFLTASCM--DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQADPI 357 (512)
Q Consensus 281 ~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~ 357 (512)
+++|.+..|+.+.. .+.|...++..... ..+.... -.....+++++++..|+.+ ...+.|..+|++..... .
T Consensus 208 avdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~~~~~-l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~ 282 (400)
T 3p5b_L 208 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-T 282 (400)
T ss_dssp EEETTTTEEEEEECSSSCCEEEEETTSCSC---EEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-E
T ss_pred EEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEEEECC-CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-E
Confidence 99997666665542 37888888754221 1221111 1245679999877766555 44678999998754331 2
Q ss_pred eecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 358 KLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 358 ~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.... .-....++++.. + .++++-...+.|..+|..+|+.+..
T Consensus 283 ~~~~~~~l~~P~gl~v~~-~-~lywtd~~~~~V~~~~~~~G~~~~~ 326 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNL 326 (400)
T ss_dssp EEECSSTTSSEEEEEEET-T-EEEEEESSSCSEEEEESSSCCCCEE
T ss_pred EEeCCCCCCCCEEEEEeC-C-EEEEecCCCCeEEEEEcCCCCceEE
Confidence 2222 223456777733 3 5777777788999999877766554
No 283
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.15 E-value=0.00014 Score=71.80 Aligned_cols=53 Identities=6% Similarity=-0.067 Sum_probs=31.7
Q ss_pred CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe
Q 010390 331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS 383 (512)
Q Consensus 331 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 383 (512)
.+.+++.++.|+.++.||.++++.....-.+......-+.+..+|.+++++.+
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 46677789999999999999988743222222111122445556644555443
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.09 E-value=0.00035 Score=71.70 Aligned_cols=200 Identities=8% Similarity=0.005 Sum_probs=108.9
Q ss_pred CEEEEEee-CCCCCeEEEEeCCC----cEEEEeCCCC-CCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 152 SIKSLCSH-PTNSDILVSGSRDG----SFAIWDLRCK-SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 152 ~v~~l~~~-~~~~~~l~s~~~dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
.+...+|+ |++..+.++...+| .|+++|+.++ +..... + ......
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--------------------------~---~~~~~~ 225 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--------------------------V---SGTNGE 225 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--------------------------E---EEECSC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--------------------------c---cCceee
Confidence 67889999 99843444444443 4999999877 422100 0 011346
Q ss_pred EEEeecCCEEEEEeecC----CeEEEEeccCccceecccCCCcccccccc-ccccCeeEEEeCCCCCEEEEEec---CCe
Q 010390 226 VLYLKDEVSIATASAVN----SIVKFWDTRNLKAQITQAWPHAESSSAKE-TRLHGISSLSQDSNGVFLTASCM---DHR 297 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---dg~ 297 (512)
+.|+||++.|+.+...+ ..|.++++.+....... ... ........+.|+|||++|+..+. ...
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l---------v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 296 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVC---------LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAE 296 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEE---------EEECCCTTCEEEEEECTTSSEEEEEEECSSCEE
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEE---------EEecCCCceEEEEEECCCCCEEEEEecCCCCce
Confidence 78999999888765322 36888888765422111 011 11123567899999998887653 346
Q ss_pred EEEEEcccCCCCc-eEeeeeceeceeEEEEEECCCCCEEEEecCC----CCEEEEecCCCCCCCce-eccccC--CeEEE
Q 010390 298 IYLYNVLQLDKGP-IQHFSGCRIESFYVKSEICPNASHILSGSSD----GNAYVWQVNKPQADPIK-LKSHDG--EVTAV 369 (512)
Q Consensus 298 i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----g~i~iw~~~~~~~~~~~-~~~h~~--~v~~v 369 (512)
|+++|+.+..... +..+.... ......+.|+..+.+++....+ ..|..+++.+... ... +..|.. .+..+
T Consensus 297 l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~ 374 (751)
T 2xe4_A 297 VHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESI 374 (751)
T ss_dssp EEEEESSSCTTCCCEEESSCCC-TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEE
T ss_pred EEEEECCCCCCCceeEEeecCC-CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEE
Confidence 8888886542222 02222111 1222233433334444444433 2466667654222 122 333433 45566
Q ss_pred EeCCCCCCeEEEEeCCCcEE--EEeC
Q 010390 370 NWCPNEAGKIVTSSDDYTVR--LWSL 393 (512)
Q Consensus 370 ~~~~~~~~~l~s~~~dg~i~--vwd~ 393 (512)
.+. +..++++...|+..+ ++++
T Consensus 375 ~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 375 AVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEE--CCEEEEEEEeCCEEEEEEEec
Confidence 665 325777777888554 5554
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.08 E-value=0.0059 Score=55.54 Aligned_cols=274 Identities=7% Similarity=-0.009 Sum_probs=139.9
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccccccccee-ccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARIS-DWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
...+.+|.| .+++..+|+| .+|.| +...+.++. - ..+. ........+.+|.|.+ +. ++.++.
T Consensus 35 ~~~~~~v~~---~~~~~~~~~G-~~g~i-~~s~DgG~t-W---------~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~ 97 (327)
T 2xbg_A 35 TATILDMSF---IDRHHGWLVG-VNATL-METRDGGQT-W---------EPRTLVLDHSDYRFNSVSFQG-NE-GWIVGE 97 (327)
T ss_dssp SSCEEEEEE---SSSSCEEEEE-TTTEE-EEESSTTSS-C---------EECCCCCSCCCCEEEEEEEET-TE-EEEEEE
T ss_pred CCcEEEEEE---CCCCcEEEEc-CCCeE-EEeCCCCCC-C---------eECCCCCCCCCccEEEEEecC-Ce-EEEEEC
Confidence 446788887 7777777755 46655 333333321 0 0010 0112245788999976 43 444556
Q ss_pred CCcEEEEeCCCCee---eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 129 DQTIKIWDAEKKKC---TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 129 dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
++.|.. ....++. +.....+.+.+..+.+.+++ ..++++ .+|.|.. ....++.-.
T Consensus 98 ~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~------------------ 155 (327)
T 2xbg_A 98 PPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQ------------------ 155 (327)
T ss_dssp TTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEE------------------
T ss_pred CCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCE------------------
Confidence 675544 2233332 22111233557788877655 555544 4554422 111111100
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEE-Eec--cCccceecccCCCccccccccccccCeeEEEe
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF-WDT--RNLKAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~i-wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
.........+..+.+.+++..+++ + .+|.+.. .|- .+.+.. .......+..+.+
T Consensus 156 --------~~~~~~~~~~~~~~~~~~~~~~~~-g-~~G~~~~S~d~gG~tW~~~-------------~~~~~~~~~~~~~ 212 (327)
T 2xbg_A 156 --------ALVQEAIGVMRNLNRSPSGEYVAV-S-SRGSFYSTWEPGQTAWEPH-------------NRTTSRRLHNMGF 212 (327)
T ss_dssp --------EEECSCCCCEEEEEECTTSCEEEE-E-TTSSEEEEECTTCSSCEEE-------------ECCSSSCEEEEEE
T ss_pred --------EeecCCCcceEEEEEcCCCcEEEE-E-CCCcEEEEeCCCCCceeEC-------------CCCCCCccceeEE
Confidence 001122346788899988776654 4 3554443 332 111111 0112245788889
Q ss_pred CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec--eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390 283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC--RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360 (512)
Q Consensus 283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~ 360 (512)
.+++..++ .+.+|.+++.+...+. ........ .....+..+++.+++..++++. +|.| ++..+.++. ...+.
T Consensus 213 ~~~g~~~~-~~~~G~~~~s~~D~G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t-W~~~~ 286 (327)
T 2xbg_A 213 TPDGRLWM-IVNGGKIAFSDPDNSE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT-WQQDV 286 (327)
T ss_dssp CTTSCEEE-EETTTEEEEEETTEEE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS-CEECG
T ss_pred CCCCCEEE-EeCCceEEEecCCCCC--eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc-cEEcC
Confidence 98887654 4467887776421110 00000000 0112356688888887777665 6666 344444432 22222
Q ss_pred ---cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 361 ---SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 361 ---~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
.....+.++.|.++ ..++.++.+|.|.-++-
T Consensus 287 ~~~~~~~~~~~v~~~~~--~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 287 DVKKVPSNFYKILFFSP--DQGFILGQKGILLRYVT 320 (327)
T ss_dssp GGTTSSSCCCEEEEEET--TEEEEECSTTEEEEECC
T ss_pred ccCCCCCCeEEEEEECC--CceEEEcCCceEEEEcC
Confidence 22456788888754 46778888998776653
No 286
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.07 E-value=0.0049 Score=54.32 Aligned_cols=278 Identities=11% Similarity=0.082 Sum_probs=165.3
Q ss_pred cEEEEe---eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390 66 HIFAVS---DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC 142 (512)
Q Consensus 66 ~~latg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 142 (512)
+|+.+- +.+..|.|.|+.+.... .+.-..-+. .-.+|..+.||.-. ..++.|+|+++.+.
T Consensus 37 kyicVrE~~~~~~~VvIiDl~n~~~~------------~Rrpi~Ads----AIMnP~~~ViALra-g~~LQiFnletK~k 99 (365)
T 2xzh_A 37 KFICIREKVGEQAQVVIIDMNDPSNP------------IRRPISADS----AIMNPASKVIALKA-GKTLQIFNIEMKSK 99 (365)
T ss_dssp TEEEEEEEETTEEEEEEEETTSTTSC------------EEEECCCSE----EEECSSSSEEEEEE-TTEEEEEETTTTEE
T ss_pred ceEEEEecCCCCCEEEEEECCCCCCc------------cccccccce----eeeCCCccEEEEec-CCeEEEechHHhhh
Confidence 455543 33447899998875321 222222222 33478877777554 67899999999988
Q ss_pred eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390 143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222 (512)
Q Consensus 143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (512)
+..+.-. ..|.-=.|-.. +.|+-.+. ..|.-|++......... + .+...+ ....
T Consensus 100 lks~~~~-e~VvfWkWis~--~~L~lVT~-taVyHWs~~~~s~P~kv------F--------------dR~~~L--~~~Q 153 (365)
T 2xzh_A 100 MKAHTMT-DDVTFWKWISL--NTVALVTD-NAVYHWSMEGESQPVKM------F--------------DRHSSL--AGCQ 153 (365)
T ss_dssp EEEEECS-SCEEEEEECSS--SEEEEEES-SEEEEEESSTTCCCEEE------E--------------ECCGGG--TTCE
T ss_pred hcceecC-CccEEEEecCC--CeEEEEcC-CcEEEEcccCCCCCcee------e--------------ecchhc--ccce
Confidence 8877643 56766667654 55666554 58999999763322111 0 000011 1345
Q ss_pred EEEEEEeecCCEEEEEee------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC---CCEEEEEe
Q 010390 223 ITSVLYLKDEVSIATASA------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN---GVFLTASC 293 (512)
Q Consensus 223 v~~~~~~~~~~~l~~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~ 293 (512)
|..-..+++.++++.+|- -.|.+.+|..+..... ..++|......+.+..+ ..+++.+.
T Consensus 154 IInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ------------~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 154 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ------------PIEGHAASFAQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE------------EECCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc------------eeeeeeeeeEEEecCCCCCCceEEEEEE
Confidence 666677788888877663 2367888888765543 24555444433433322 12333333
Q ss_pred c---CCeEEEEEcccC-CCCceE-------eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390 294 M---DHRIYLYNVLQL-DKGPIQ-------HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362 (512)
Q Consensus 294 ~---dg~i~i~d~~~~-~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h 362 (512)
. .+.+++.++... ...+.. .+.......+..++..|+....+..-+.-|.|++||+.++.+. ..-+-.
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i-~~nrIS 300 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRIS 300 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE-EEEECC
T ss_pred ecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE-EEeccC
Confidence 2 268999998543 111111 1122234567788899999999999999999999999998773 333434
Q ss_pred cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
...|..-+-.... .=++.....|.|.--.++....+.
T Consensus 301 ~d~iF~ta~~~~~-~Gi~~Vnr~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 301 GETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEEENIIP 337 (365)
T ss_dssp SSCEEEEEEEGGG-TEEEEEETTCEEEEEEECTTTHHH
T ss_pred CCceEEecccCCC-CcEEEEcCCCEEEEEEECcccEeh
Confidence 5556555544443 345555577777777776655443
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=0.0025 Score=60.77 Aligned_cols=267 Identities=10% Similarity=0.043 Sum_probs=142.7
Q ss_pred EEEecC-CCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceecc-ccCCCcEEEEEE-------ecCCCEEEEEe
Q 010390 58 FCKTSK-NSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-VAHQNAIFDLCW-------IKEDTNILTAS 127 (512)
Q Consensus 58 ~~~~s~-~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~-------s~~~~~l~s~~ 127 (512)
+++++| ++. ++++-...+.|++.|.+++... .+... .........|+| ++++++|+.+.
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-----------~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad 211 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-----------SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI 211 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-----------EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-----------EEEccCccccCCCcEEEEeecccccCCCCCEEEEEe
Confidence 344488 344 4444444567899998765321 01111 112346899999 99999777665
Q ss_pred CCC-------cEEEEeCCC-Ceee-----ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC-------CCCCCC
Q 010390 128 GDQ-------TIKIWDAEK-KKCT-----GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR-------CKSSPK 187 (512)
Q Consensus 128 ~dg-------~i~iwd~~~-~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~-------~~~~~~ 187 (512)
..+ .|.+.+... +... ..+... .....++++|++..++++-..++.|..+|+. ++..-.
T Consensus 212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 543 266665433 2221 122211 2345678899765777777788889999987 443200
Q ss_pred CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee----cccC--
Q 010390 188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI----TQAW-- 261 (512)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~----~~~~-- 261 (512)
...... .+ ..... ...........++|+|++..++++-...+.|+.++........ ....
T Consensus 291 p~~~~~--------~g-----~~~~l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~ 356 (496)
T 3kya_A 291 PIVKNN--------PN-----TFKQL-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY 356 (496)
T ss_dssp CBGGGC--------TT-----TEEEE-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred cccccc--------cc-----cccee-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence 000000 00 00000 0011123467899999999777766678899997654322110 0000
Q ss_pred CCcccc--ccccccccCee-EEEeC-------CCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-------------
Q 010390 262 PHAESS--SAKETRLHGIS-SLSQD-------SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR------------- 318 (512)
Q Consensus 262 ~~~~~~--~~~~~~~~~i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------- 318 (512)
...... ........... .+... .++.++++-...++|+.++. . ..+..+.+..
T Consensus 357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~---G~v~TiaG~g~~~~~~~~~~~G~ 432 (496)
T 3kya_A 357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-E---GIVSTYAGRGASTSLADGNQWGT 432 (496)
T ss_dssp TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-T---CBEEEEEESCTTHHHHHSCSCCC
T ss_pred CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-C---CCEEEEecccccccccCcccccc
Confidence 000000 00011112233 44554 45666666667789999984 2 1333333220
Q ss_pred ---------eceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCC
Q 010390 319 ---------IESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 319 ---------~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
.-.....++++++ +.++++=..++.|+.+++.....
T Consensus 433 ~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 433 DDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp CCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred CCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 0123567888886 77777777778899998876543
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=0.0025 Score=60.69 Aligned_cols=263 Identities=10% Similarity=-0.033 Sum_probs=143.7
Q ss_pred cEEEEEEec-CCCEEEEE-eCCCcEEEEeCCCCeeeecccC---cCCCEEEEEe-------eCCCCCeEEEEeCCC-c--
Q 010390 110 AIFDLCWIK-EDTNILTA-SGDQTIKIWDAEKKKCTGALMG---HTGSIKSLCS-------HPTNSDILVSGSRDG-S-- 174 (512)
Q Consensus 110 ~V~~l~~s~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~-------~~~~~~~l~s~~~dg-~-- 174 (512)
....|+|.| +...|+.+ ...+.|++.|+.++.....+.. .......|+| ++++ ..|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCCCCCcc
Confidence 467899998 35555544 4446799999888766544432 1235889999 9988 5444444433 2
Q ss_pred ----EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390 175 ----FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT 250 (512)
Q Consensus 175 ----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~ 250 (512)
|.+.+............ .. .+. .......++.+|++..|+++...++.|..+|+
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~------------------~~---~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSD------------------IQ---LIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSC------------------EE---EEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred cCceEEEEecCCCCceeeccc------------------ce---eec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 55665332111100000 00 000 11244577889977777777778889999999
Q ss_pred c-------Ccccee---cccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCc--eEeeeec
Q 010390 251 R-------NLKAQI---TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGP--IQHFSGC 317 (512)
Q Consensus 251 ~-------~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~--~~~~~~~ 317 (512)
. ++.... .......... ...........++|+|+|+.|+.+. ..+.|+.++........ ...+.+.
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQL-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEE-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred ccccccccCceeeccccccccccccee-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 7 333200 0000000000 0011123467899999999655554 56789987753321110 0112111
Q ss_pred --------------eeceeEE-EEEEC-------CCCCEEEEecCCCCEEEEecCCCCCCCceeccc-------------
Q 010390 318 --------------RIESFYV-KSEIC-------PNASHILSGSSDGNAYVWQVNKPQADPIKLKSH------------- 362 (512)
Q Consensus 318 --------------~~~~~~~-~~~~s-------~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h------------- 362 (512)
... ... .++.. .++.++++=...+.|+.++. ++. +.++.+.
T Consensus 356 ~g~~G~~DG~~~~a~f~-~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~--v~TiaG~g~~~~~~~~~~~G 431 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMN-NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI--VSTYAGRGASTSLADGNQWG 431 (496)
T ss_dssp TTBCCCBCCBGGGCBCS-SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB--EEEEEESCTTHHHHHSCSCC
T ss_pred CCCCcccCCcccccccC-CCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC--EEEEecccccccccCccccc
Confidence 001 122 34443 45677777677788999984 332 1222211
Q ss_pred -----------cCCeEEEEeCCC-CCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 363 -----------DGEVTAVNWCPN-EAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 363 -----------~~~v~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
-.....|++.++ + .++++=.....|+.++++...+..-
T Consensus 432 ~~dG~~~~~a~f~~P~gIavd~~~g-~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 432 TDDGDLREVARFRDVSGLVYDDVKE-MFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp CCCEETTTTCCCSSEEEEEEETTTT-EEEEEETTTTEEEEEEECCCC----
T ss_pred cCCCCchhhhhcCCCcEEEEECCCC-EEEEEeCCCCEEEEEECCCCccccc
Confidence 124678999986 6 6666666778999999987766553
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.05 E-value=0.0047 Score=55.80 Aligned_cols=226 Identities=8% Similarity=-0.082 Sum_probs=132.7
Q ss_pred CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeee-cccCcCC
Q 010390 74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTG-ALMGHTG 151 (512)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~-~~~~h~~ 151 (512)
...|+..|++..... ..........+.+++|.+.+..|+ +-...+.|..+++..+.... .+...-.
T Consensus 12 ~~~I~~i~l~~~~~~------------~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~ 79 (318)
T 3sov_A 12 RRDLRLVDATNGKEN------------ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL 79 (318)
T ss_dssp EEEEEEEETTCTTSC------------CEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred cCeEEEEECCCCceE------------EEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC
Confidence 457899998765211 111111224577899998655555 55567889999987663221 2222223
Q ss_pred CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec
Q 010390 152 SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD 231 (512)
Q Consensus 152 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 231 (512)
....+++.+.+++++++-...+.|.++++....... ...........+++.|.
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~---------------------------l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV---------------------------LFWQELDQPRAIALDPS 132 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---------------------------EECSSCSSEEEEEEEGG
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE---------------------------EEeCCCCCccEEEEeCC
Confidence 566788887664677776677899999986432111 00112235688999998
Q ss_pred CCEEEEEee-cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCC
Q 010390 232 EVSIATASA-VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKG 309 (512)
Q Consensus 232 ~~~l~~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~ 309 (512)
+..++.+.. ..+.|...++........ ..........+++++++..|+.+. ..+.|..+|+......
T Consensus 133 ~g~ly~td~~~~~~I~r~~~dG~~~~~~-----------~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~ 201 (318)
T 3sov_A 133 SGFMYWTDWGEVPKIERAGMDGSSRFII-----------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ 201 (318)
T ss_dssp GTEEEEEECSSSCEEEEEETTSCSCEEE-----------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCeEEE-----------EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE
Confidence 777776542 357788888764322111 111123467899999777666654 5688999998542221
Q ss_pred ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 310 PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
.+.... ......+++. .+.++++-...+.|..++..+++.
T Consensus 202 ---~~~~~~-~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 202 ---AVVKGS-LPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp ---EEECSC-CSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred ---EEecCC-CCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 111111 1223445654 334555555667888888866654
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.90 E-value=0.025 Score=56.37 Aligned_cols=229 Identities=8% Similarity=-0.108 Sum_probs=137.3
Q ss_pred EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeeec
Q 010390 67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTGA 145 (512)
Q Consensus 67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~ 145 (512)
+|+.+ ....|+..++++... .....+ ..-..+..|+|++.+..|+ +-..++.|..+++........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~-----------~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v 74 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNN-----------NVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV 74 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTC-----------EEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCc-----------ceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE
Confidence 44444 356799999875432 011111 2235688999999666665 555678899999876543333
Q ss_pred ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
+.........|++.+.+++++++-...+.|.+.++....... .....-.....
T Consensus 75 ~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~---------------------------l~~~~l~~P~~ 127 (628)
T 4a0p_A 75 VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV---------------------------LVWKDLDSPRA 127 (628)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE---------------------------EECSSCCCEEE
T ss_pred EeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE---------------------------EEeCCCCCccc
Confidence 332224567888887765677776677889999886432110 00011235689
Q ss_pred EEEeecCCEEEEEe-ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEc
Q 010390 226 VLYLKDEVSIATAS-AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNV 303 (512)
Q Consensus 226 ~~~~~~~~~l~~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~ 303 (512)
+++.|....++.+- +..+.|...++........ .........+++++++..|+.+. ..+.|..+|+
T Consensus 128 iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l------------~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 128 LALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL------------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE------------ECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 99998766676654 2256787777765433221 11234578899999877776665 5678999998
Q ss_pred ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390 304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 353 (512)
..... ..+... ......+++.. +.++++-...+.|...|..+++
T Consensus 196 dG~~~---~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 196 LGLNR---EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TSCSC---EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCce---EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 65332 122211 11233566654 4444555556778888865554
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.89 E-value=0.007 Score=61.78 Aligned_cols=237 Identities=9% Similarity=-0.058 Sum_probs=141.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
+|+.+ ....|+..++........+. ....+.+|+|.+.++.++++-...+.|+.+++........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~------------- 461 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS------------- 461 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc-------------
Confidence 44433 34568888887665444343 3456789999986646666666678888888864321000
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
..............|++.+.+..|+.+-...+.|.+.++........ ..........|+
T Consensus 462 ----------~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l-----------~~~~l~~P~gIa 520 (791)
T 3m0c_C 462 ----------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-----------FRENGSKPRAIV 520 (791)
T ss_dssp ----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-----------EECTTCCEEEEE
T ss_pred ----------eeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEE-----------EeCCCCCcceEE
Confidence 00011112235678899888888888777788999999875443221 112223478999
Q ss_pred eCCCCCEEEEEec--CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCCce
Q 010390 282 QDSNGVFLTASCM--DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 282 ~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~ 358 (512)
++|.+..|+.+.. .+.|.+.++... ....+.... -.....+++++.+..|+.+ ...+.|..+++..... ...
T Consensus 521 VDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v 595 (791)
T 3m0c_C 521 VDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTI 595 (791)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred EecCCCCEEEecCCCCCeEEEEecCCC---ceEEEEeCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEE
Confidence 9997666666543 268888887532 222222211 1345678999776666554 4456799999865443 222
Q ss_pred ecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 359 LKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 359 ~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
... .-....+|++..+ .++++-...+.|...|..+|+.+..
T Consensus 596 ~~~~~~l~~P~glav~~~--~lYwtD~~~~~I~~~dk~tG~~~~~ 638 (791)
T 3m0c_C 596 LEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL 638 (791)
T ss_dssp EECTTTTSSEEEEEEETT--EEEEEETTTTEEEEEETTTCCCCEE
T ss_pred ecCCCccCCCCEEEEeCC--EEEEEECCCCEEEEEeCCCCcceEE
Confidence 222 1234556776432 5666666778888888777765444
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.88 E-value=0.0062 Score=65.02 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=63.7
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC------CCEEEEEeC-CCcEEEEeC
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE------DTNILTASG-DQTIKIWDA 137 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~------~~~l~s~~~-dg~i~iwd~ 137 (512)
+..++.+. .+.+.+++++.+.. ..... ..-...|.|+++.|. +++++.|.. |++|+|+++
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~L-----------~~~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQEL-----------RQISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTEE-----------EEEEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred CCEEEEEE-CCEEEEEEeeCCce-----------eeecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 34555554 56777777764311 11111 122468999999863 478999996 999999999
Q ss_pred CCCeeeecccC-cCCCEEEEEeeC-CCCCeEEEEeCCCcEEEEeCC
Q 010390 138 EKKKCTGALMG-HTGSIKSLCSHP-TNSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 138 ~~~~~~~~~~~-h~~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~ 181 (512)
.+.+.+....- ......++.+.. .+..+|..|-.||.+..+.+.
T Consensus 590 ~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 590 PSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 87665543221 112344444332 233578889999988776654
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.85 E-value=9.7e-05 Score=74.78 Aligned_cols=228 Identities=9% Similarity=-0.062 Sum_probs=130.2
Q ss_pred CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC---CCCCccccceeeecccccccc
Q 010390 129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS---SPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~ 205 (512)
.+.|++.++.+.+....+... ..+..|+|.+.++.++++-...+.|+.+++.... ....
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~----------------- 446 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT----------------- 446 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC-----------------
T ss_pred ccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE-----------------
Confidence 456888888776655444433 3566889998764555555566789999887521 0000
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (512)
...........+++.+.+..|+++-...+.|.++++......... .........++++|.
T Consensus 447 ---------~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-----------~~~~~~P~giavDp~ 506 (699)
T 1n7d_A 447 ---------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----------REQGSKPRAIVVDPV 506 (699)
T ss_dssp ---------BCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-----------CCSSCCCCCEECCSS
T ss_pred ---------EEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-----------eCCCCCcceEEEccC
Confidence 000111234567777666666665555788999988754332211 111234578899987
Q ss_pred CCEEEEEec--CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEecCCCCCCCceecc-
Q 010390 286 GVFLTASCM--DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQVNKPQADPIKLKS- 361 (512)
Q Consensus 286 ~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~- 361 (512)
+.+|+.+.. .+.|.++++....... +.... ......++++|++..| ++-...+.|..+++..... ..+..
T Consensus 507 ~g~ly~td~~~~~~I~~~~~dG~~~~~---l~~~~-l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--~~~~~~ 580 (699)
T 1n7d_A 507 HGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILED 580 (699)
T ss_dssp SSCCEECCCSSSCCEEBCCSSSCCCCE---ESCSS-CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--EEECCC
T ss_pred CCcEEEcccCCCCeEEEEeCCCCCeeE---EEeCC-CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--EEEEec
Confidence 665555543 2678888764322211 11111 1223458999876555 5555567899999875332 22211
Q ss_pred --ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 362 --HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 362 --h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
.-....+|++..+ .++++....+.|..++..+++.+..+
T Consensus 581 ~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 581 EKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp SSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred CCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 1123445555443 56777777789999998887766543
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.82 E-value=0.00011 Score=74.48 Aligned_cols=204 Identities=8% Similarity=-0.059 Sum_probs=111.7
Q ss_pred CcEEEEEEecCCCEEEEE-eCCCcEEEEeCCC----CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 109 NAIFDLCWIKEDTNILTA-SGDQTIKIWDAEK----KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~-~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
..+..|+|.+.+..|+.+ ...+.|+.+++.. ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456788999877666654 4467899999875 22222222222234567887655466666666788999987643
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-CeEEEEeccCccceecccCC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQAWP 262 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~~~ 262 (512)
..... ..........+++.|.+..|+.+.... +.|..+++........
T Consensus 486 ~~~~l---------------------------~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l---- 534 (699)
T 1n7d_A 486 KRKTL---------------------------FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---- 534 (699)
T ss_dssp CEEEE---------------------------CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE----
T ss_pred ceEEE---------------------------EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE----
Confidence 21110 001112456778888766666544222 6777777654322111
Q ss_pred CccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390 263 HAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 341 (512)
..........|++++++..|+.+ ...+.|.++++.......+.. ..........+++..+ .++++....
T Consensus 535 -------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~--~~~~~~~P~glavd~~-~lywtd~~~ 604 (699)
T 1n7d_A 535 -------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE--DEKRLAHPFSLAVFED-KVFWTDIIN 604 (699)
T ss_dssp -------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC--CSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred -------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe--cCCcCCCceEeEEECC-EEEEEeCCC
Confidence 11112346789999876655554 456789999985422211111 1000111222444333 444555556
Q ss_pred CCEEEEecCCCC
Q 010390 342 GNAYVWQVNKPQ 353 (512)
Q Consensus 342 g~i~iw~~~~~~ 353 (512)
+.|..++..+++
T Consensus 605 ~~V~~~d~~~G~ 616 (699)
T 1n7d_A 605 EAIFSANRLTGS 616 (699)
T ss_dssp TCEEEEETTTEE
T ss_pred CeEEEEEccCCC
Confidence 778888865544
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.82 E-value=0.018 Score=57.29 Aligned_cols=232 Identities=7% Similarity=-0.118 Sum_probs=145.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
+|+.+ ..+.|+..++.+......+. ..-..+.+|+|.+.++.++++-..++.|..+++.......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~------------- 73 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH------------- 73 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------
Confidence 44444 45678999987654332222 1234688999999775666676778899988886532111
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
...........+++...+..|+.+-...+.|.+.++........ ..........+
T Consensus 74 --------------v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l-----------~~~~l~~P~~i 128 (628)
T 4a0p_A 74 --------------VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL-----------VWKDLDSPRAL 128 (628)
T ss_dssp --------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE-----------ECSSCCCEEEE
T ss_pred --------------EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE-----------EeCCCCCcccE
Confidence 00011134678888887777877776778999999875432211 11222446899
Q ss_pred EeCCCCCEEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCCc
Q 010390 281 SQDSNGVFLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQADPI 357 (512)
Q Consensus 281 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~ 357 (512)
+++|....|+.+. ..+.|...++.......+ .. .-.....++++++++.|+.+ ...+.|..+++..... .
T Consensus 129 avdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l--~~---~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~ 201 (628)
T 4a0p_A 129 ALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL--VP---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--E 201 (628)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--EC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--E
T ss_pred EEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE--EC---CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--E
Confidence 9998655666554 256888888754322211 11 12345678999976666544 4567899999876443 2
Q ss_pred eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.+...-....++++.. + .++++-...+.|...|..+++....
T Consensus 202 v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 202 VIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp EEEECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred EeeccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCceEE
Confidence 3333344566788765 3 5667766788999999877765443
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.78 E-value=0.038 Score=54.91 Aligned_cols=298 Identities=5% Similarity=-0.100 Sum_probs=157.0
Q ss_pred CCcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-
Q 010390 51 TPPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG- 128 (512)
Q Consensus 51 ~~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~- 128 (512)
..+.+|++ .+. +++.++-...+.|.+.+.+.... .......-.....|++.|.+.+|+.+..
T Consensus 84 ~~P~GlAv---D~~~~~ly~~d~~~~~I~v~~~dG~~~-------------~~l~~~~l~~P~~Iavdp~~g~ly~tD~g 147 (619)
T 3s94_A 84 LSPDGLAC---DWLGEKLYWTDSETNRIEVSNLDGSLR-------------KVLFWQELDQPRAIALDPSSGFMYWTDWG 147 (619)
T ss_dssp SCEEEEEE---ETTTTEEEEEETTTTEEEEEETTSCSC-------------EEEECSSCSCCCCEEEETTTTEEEEEECS
T ss_pred CCcCeEEE---EecCCEEEEEeCCCCEEEEEECCCCCE-------------EEEEeCCCCCCceEEEecCCCeEEEeccC
Confidence 35677887 764 44555556778999999876532 0111123345678999997666654443
Q ss_pred -CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 129 -DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 129 -dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
.+.|...++............-...+.|++.+++..++++-...+.|...|+..........
T Consensus 148 ~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~----------------- 210 (619)
T 3s94_A 148 EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK----------------- 210 (619)
T ss_dssp SSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------------------
T ss_pred CCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-----------------
Confidence 45677677654332222222345678999999775666666667788888886432211100
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc------------cc--cccccc
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE------------SS--SAKETR 273 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~--~~~~~~ 273 (512)
........+++..+ .++.+...++.|...|..+++........... +. ..-...
T Consensus 211 ----------~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ 278 (619)
T 3s94_A 211 ----------GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGID 278 (619)
T ss_dssp ---------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTT
T ss_pred ----------CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCC
Confidence 00112234555433 56655556677888887665433221110000 00 000000
Q ss_pred ccC-------------eeEEE-----eCCC--------CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390 274 LHG-------------ISSLS-----QDSN--------GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE 327 (512)
Q Consensus 274 ~~~-------------i~~~~-----~~~~--------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (512)
.+. ..|.+ +.+| ..+|+.+ ..+.|+..++........ .+.... -.....++
T Consensus 279 ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~-~~~~~~-l~~~~~ld 355 (619)
T 3s94_A 279 NGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDI-VLQLED-IRHAIAID 355 (619)
T ss_dssp GGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCE-ECCCSC-CSSEEEEE
T ss_pred CCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCcccee-EEeccc-cCccEEEE
Confidence 001 11111 1111 1233333 345677777654332211 111111 12356789
Q ss_pred ECCCCCEE-EEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 328 ICPNASHI-LSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 328 ~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
|++.+..| ++-...+.|+.+++..... .......-.....+++...+.+++++-+..+.|.+.++....
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 98865555 4545577899998876433 122322234677888886553566676677899999987653
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.71 E-value=0.013 Score=52.29 Aligned_cols=172 Identities=10% Similarity=0.082 Sum_probs=103.1
Q ss_pred EEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeee-cccC----cC--CCEEEEEe---eCCCCCeEEEEe---------
Q 010390 111 IFDLCWIKEDTNILTAS-GDQTIKIWDAEKKKCTG-ALMG----HT--GSIKSLCS---HPTNSDILVSGS--------- 170 (512)
Q Consensus 111 V~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~-~~~~----h~--~~v~~l~~---~~~~~~~l~s~~--------- 170 (512)
-.+++|.+....|..++ ..++|..||...+.... .+.+ .. ..+..|.| .|++ .++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccccccc
Confidence 34678988555665555 78999999987653322 3332 11 13578999 5775 6666543
Q ss_pred ----CCCcEEEEeCC---CCCCCCCccccceeeecccccccccccccccceeccc-ccccEEEEEEeecCCEEEEEeecC
Q 010390 171 ----RDGSFAIWDLR---CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA-ASMSITSVLYLKDEVSIATASAVN 242 (512)
Q Consensus 171 ----~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~g~~d 242 (512)
.+..|..+|+. +++.......... ........+ .......++..++|+..++ ++..
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~---------------~~~~~~~~g~~~~~~nDvavD~~GnaYVt-~s~~ 157 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKV---------------QDEFEKKAGKRPFGVVQSAQDRDGNSYVA-FALG 157 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHH---------------HHHHHHHHSSCCEEEEEEEECTTSCEEEE-EEES
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccc---------------cccccccccccccCCceeEECCCCCEEEe-CCCC
Confidence 25779999988 5544321110000 000000000 1135889999999988886 4456
Q ss_pred -CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 243 -SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 243 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
+.|..++............ . .........+.|+++|+|..|++....|.|..+|+..
T Consensus 158 ~~~I~rV~pdG~~~~~~~~~-~-----~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 158 MPAIARVSADGKTVSTFAWE-S-----GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCEEEEECTTSCCEEEEEEC-C-----CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCeEEEEeCCCCEEeeeeec-C-----CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 7777777665422211000 0 0111234578999999999999887799999999874
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.71 E-value=0.0066 Score=54.60 Aligned_cols=202 Identities=9% Similarity=0.074 Sum_probs=112.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCC---CC---eEEEEeC---CCcEEEEeCCCCCC-CCC
Q 010390 119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN---SD---ILVSGSR---DGSFAIWDLRCKSS-PKS 188 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~---~l~s~~~---dg~i~vwd~~~~~~-~~~ 188 (512)
...+++.....+-+.+||+ +|+.++.+.. +.++.+..-|.- +. ++++... +++|++|++..... +..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3455666667788999999 8888888764 567777776621 01 2333333 57899997742211 110
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEE--eec-CCEEEEEeecCCeEEEEeccC---ccceecccCC
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY--LKD-EVSIATASAVNSIVKFWDTRN---LKAQITQAWP 262 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~~l~~~g~~dg~i~iwd~~~---~~~~~~~~~~ 262 (512)
... ...........+..+++ ++. +...+.....+|.+..|++.. +....+..
T Consensus 116 i~~--------------------~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV-- 173 (355)
T 3amr_A 116 MTD--------------------PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV-- 173 (355)
T ss_dssp CSC--------------------TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE--
T ss_pred ccc--------------------cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE--
Confidence 000 00000001145666777 553 444344455789999999843 21111100
Q ss_pred CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC---CCceEeeeeceeceeEEEEEE--CCCCC-EEE
Q 010390 263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD---KGPIQHFSGCRIESFYVKSEI--CPNAS-HIL 336 (512)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~--s~~~~-~l~ 336 (512)
........+..+..++....|+.+-.+.-|..++..... ...+...........+-.+++ .++++ +|+
T Consensus 174 ------R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi 247 (355)
T 3amr_A 174 ------RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM 247 (355)
T ss_dssp ------EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred ------EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence 111122468889999988899999998777777754322 112222222212223444555 55655 555
Q ss_pred Eec-CCCCEEEEecCC
Q 010390 337 SGS-SDGNAYVWQVNK 351 (512)
Q Consensus 337 ~g~-~dg~i~iw~~~~ 351 (512)
+.+ .+++..+||...
T Consensus 248 vSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 248 ASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEGGGTEEEEEESST
T ss_pred EEcCCCCEEEEEECCC
Confidence 544 567899999863
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.68 E-value=0.0024 Score=56.88 Aligned_cols=171 Identities=7% Similarity=0.052 Sum_probs=107.3
Q ss_pred cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe---CCCCCEEEEEec--
Q 010390 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ---DSNGVFLTASCM-- 294 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~-- 294 (512)
.....++.|++....+.++.-..+.|..||...+..... ..+... ........+..|.+ +++++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s---~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS---SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC---CSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc---ccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 345678899987777777666799999999975543322 111100 00011123578999 688877776442
Q ss_pred -----------CCeEEEEEcc---cCCCCceEeeeecee---------ceeEEEEEECCCCCEEEEecCC-CCEEEEecC
Q 010390 295 -----------DHRIYLYNVL---QLDKGPIQHFSGCRI---------ESFYVKSEICPNASHILSGSSD-GNAYVWQVN 350 (512)
Q Consensus 295 -----------dg~i~i~d~~---~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~l~~g~~d-g~i~iw~~~ 350 (512)
+..|..||+. +.+......+..... ......++..++|+..++++.. +.|...+..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 6789999987 433332222222111 1246789999999999988877 776666655
Q ss_pred CCCCCCcee----ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 351 KPQADPIKL----KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 351 ~~~~~~~~~----~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
........+ .......+.|+++|++ ++|+....+|.|..+|+..
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence 432110111 1112246799999999 7777776699999999884
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.66 E-value=0.016 Score=53.26 Aligned_cols=246 Identities=10% Similarity=0.084 Sum_probs=120.4
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee--eecc---cCcCCCEEEEEeeCC---CCCeEEEEeCC-----CcE
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC--TGAL---MGHTGSIKSLCSHPT---NSDILVSGSRD-----GSF 175 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~---~~h~~~v~~l~~~~~---~~~~l~s~~~d-----g~i 175 (512)
..-..++|.|+|+++++ ..+|.|++++ +++. +..+ .........|+|+|+ +..++++-..+ ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45679999999985554 5679999998 4432 2211 122356889999997 43445544432 567
Q ss_pred EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec------------CC
Q 010390 176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV------------NS 243 (512)
Q Consensus 176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~------------dg 243 (512)
..++...... .....+.. ..............++|.|++..+++.|.. .|
T Consensus 108 ~r~~~~~~~~----~~~~~l~~--------------~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g 169 (352)
T 2ism_A 108 VRLRHLGERG----VLDRVVLD--------------GIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGG 169 (352)
T ss_dssp EEEEECSSCE----EEEEEEEE--------------EECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSS
T ss_pred EEEEeCCCCc----CceEEEEE--------------eCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCce
Confidence 7777653210 00000000 000000111123589999999766665421 14
Q ss_pred eEEEEeccCccceecccCCC-c-cccccccccccCeeEEEeCC-CCCEEEEEecCCe--------EEEEEcccCC-----
Q 010390 244 IVKFWDTRNLKAQITQAWPH-A-ESSSAKETRLHGISSLSQDS-NGVFLTASCMDHR--------IYLYNVLQLD----- 307 (512)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~i~d~~~~~----- 307 (512)
.|.-++... .......... . ...............++|+| ++.++++-...+. |.+.. ...
T Consensus 170 ~I~ri~~dG-~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp 246 (352)
T 2ism_A 170 KILRLTPEG-EPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWP 246 (352)
T ss_dssp EEEEECTTS-SBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTT
T ss_pred EEEEEcCCC-CCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCC
Confidence 555555542 1100000000 0 00001111112367789999 5665544333332 33332 111
Q ss_pred -----------CCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC-----CceeccccCCeEEEEe
Q 010390 308 -----------KGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD-----PIKLKSHDGEVTAVNW 371 (512)
Q Consensus 308 -----------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~-----~~~~~~h~~~v~~v~~ 371 (512)
..+...+.. ......++| .+|.++++.-..+.|...++...... ...+..-...+..+++
T Consensus 247 ~~~g~~~~~~~~~p~~~~~~---~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 322 (352)
T 2ism_A 247 RVVGRGNDPRYRDPLYFWPQ---GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQV 322 (352)
T ss_dssp TCCSCCCCTTSCCCSEECTT---CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEE
T ss_pred cccCCCCCCCCcCCeEecCC---CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEE
Confidence 011222211 112345666 46777776666777888777644310 1111122357899999
Q ss_pred CCCCCCeEEEEe
Q 010390 372 CPNEAGKIVTSS 383 (512)
Q Consensus 372 ~~~~~~~l~s~~ 383 (512)
.||| .++++..
T Consensus 323 ~pdG-~lyv~~~ 333 (352)
T 2ism_A 323 GPDG-ALYVTTS 333 (352)
T ss_dssp CTTS-CEEEEEC
T ss_pred CCCC-cEEEEEe
Confidence 9999 5655543
No 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.64 E-value=0.033 Score=50.74 Aligned_cols=203 Identities=12% Similarity=0.151 Sum_probs=112.7
Q ss_pred cCCcceEEEEEecCCCcEEEEe------------eCCCcEEEEECCCCCCccccccccccccceec--cccCCCcEEEEE
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVS------------DEDGYVSLFDSRRKLPSFACHRENAEKARISD--WVAHQNAIFDLC 115 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~l~ 115 (512)
......|.. .|+|..+.++ ..+|.|.++|.++...... .-.+.. +....-....+.
T Consensus 49 ~~G~EDi~~---~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-------~l~~~g~~~~~~~f~PhGi~ 118 (355)
T 3sre_A 49 DNGSEDLEI---LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-------ELEIIGNTLDISSFNPHGIS 118 (355)
T ss_dssp CSCCCEEEE---CTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-------ECEEECSSCCGGGCCEEEEE
T ss_pred CCCcceeEE---cCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-------EEEccCCCCCcCceeeeeeE
Confidence 344667776 7887655554 2699999999874322110 000111 122334677888
Q ss_pred Eec--CCC-EEEEEe-C--CCcEEEEeCCCC--e--eeecccCc-CCCEEEEEeeCCCCCeEEEEeC---C---------
Q 010390 116 WIK--EDT-NILTAS-G--DQTIKIWDAEKK--K--CTGALMGH-TGSIKSLCSHPTNSDILVSGSR---D--------- 172 (512)
Q Consensus 116 ~s~--~~~-~l~s~~-~--dg~i~iwd~~~~--~--~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~---d--------- 172 (512)
+.+ ++. +|+.+. . +.+|.+|++..+ . .+..+.+. -...+.+.+.+++ .++++... |
T Consensus 119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~ 197 (355)
T 3sre_A 119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMH 197 (355)
T ss_dssp EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHH
T ss_pred EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhh
Confidence 776 353 344442 2 467888776543 1 23333332 2357889999887 65555431 1
Q ss_pred -----CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEE
Q 010390 173 -----GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF 247 (512)
Q Consensus 173 -----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~i 247 (512)
|.|..+|. ++ .......-...+.++|+||++.++++-+..+.|..
T Consensus 198 ~~~~~g~vyr~d~--~~----------------------------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~ 247 (355)
T 3sre_A 198 LGLAWSFVTYYSP--ND----------------------------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHV 247 (355)
T ss_dssp TTCCCEEEEEECT--TC----------------------------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ccCCccEEEEEEC--Ce----------------------------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEE
Confidence 22333332 11 01111222357899999999999988878899999
Q ss_pred EeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecC-CeEEEEE
Q 010390 248 WDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMD-HRIYLYN 302 (512)
Q Consensus 248 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d 302 (512)
|++.......... .. ........+++++ +|++.+++..+ +.|..|+
T Consensus 248 ~~~~~~g~l~~~~--------~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 248 YEKHANWTLTPLR--------VL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEECTTSCEEEEE--------EE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EEECCCCcEecCE--------EE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 9987422111100 11 1134567889998 58877766533 3444444
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.63 E-value=0.015 Score=57.77 Aligned_cols=230 Identities=7% Similarity=-0.074 Sum_probs=132.7
Q ss_pred CCCcEEEEeCCCCe-eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 128 GDQTIKIWDAEKKK-CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 128 ~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
....|+..++.... ....+...-..+.+++|++.++.++++-...+.|..+++........
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------ 77 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------ 77 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------
Confidence 35668888887653 22222223446789999997745566655567888888864321100
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG 286 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (512)
.....-.....+++.+.+..++.+....+.|.+.++........ ..........|+++|.+
T Consensus 78 --------v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l-----------~~~~l~~P~~Iavdp~~ 138 (619)
T 3s94_A 78 --------VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-----------FWQELDQPRAIALDPSS 138 (619)
T ss_dssp --------EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECSSCSCCCCEEEETTT
T ss_pred --------EEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE-----------EeCCCCCCceEEEecCC
Confidence 01111236788999998888887777789999999886543221 11223447789999976
Q ss_pred CEEEEEec--CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE-EecCCCCEEEEecCCCCCCCceecccc
Q 010390 287 VFLTASCM--DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL-SGSSDGNAYVWQVNKPQADPIKLKSHD 363 (512)
Q Consensus 287 ~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~~~~~h~ 363 (512)
..|+.+.. .+.|...++..... ..+.... -.....++++++++.|+ +-...+.|..+++...... ....+.-
T Consensus 139 g~ly~tD~g~~~~I~r~~~dG~~~---~~l~~~~-~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~~ 213 (619)
T 3s94_A 139 GFMYWTDWGEVPKIERAGMDGSSR---FIIINSE-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSL 213 (619)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSC---EEEECSS-CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------
T ss_pred CeEEEeccCCCCEEEEEECCCCce---EEEEeCC-CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-EEEeCCC
Confidence 66665543 46777777643221 2221111 12356689998766554 4455678999998764432 1222122
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
....+|++..+ .++++-...+.|...|..+++....
T Consensus 214 ~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 214 PHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp --CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence 23346677654 4666666778899999888865443
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.58 E-value=0.019 Score=51.67 Aligned_cols=194 Identities=9% Similarity=0.131 Sum_probs=111.9
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC----CCE--EE--EEeC--CCcE
Q 010390 63 KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE----DTN--IL--TASG--DQTI 132 (512)
Q Consensus 63 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~----~~~--l~--s~~~--dg~i 132 (512)
|...+++....++-+.+||++.. .+..+.. +.++.+..-|+ ++. |+ +.-. +++|
T Consensus 38 p~~s~ii~t~k~~gL~Vydl~G~--------------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l 101 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSLDGK--------------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI 101 (355)
T ss_dssp GGGCEEEEEETTTEEEEEETTSC--------------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEE
T ss_pred CCccEEEEEcCCCCEEEEcCCCc--------------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeE
Confidence 34456666677889999999543 2444432 56777777662 222 33 3333 5789
Q ss_pred EEEeC--CCCeeeecccC------cC-CCEEEEEe--eCCCC-CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 133 KIWDA--EKKKCTGALMG------HT-GSIKSLCS--HPTNS-DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 133 ~iwd~--~~~~~~~~~~~------h~-~~v~~l~~--~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
.+|++ .+++ +..+.. .. ..+..+++ +|..+ .+++....+|.+..|++.....-..
T Consensus 102 ~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~------------ 168 (355)
T 3amr_A 102 EIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI------------ 168 (355)
T ss_dssp EEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE------------
T ss_pred EEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc------------
Confidence 99966 3443 333311 11 45667777 66443 3688888899999999853211100
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc-----cceecccCCCcccccccccccc
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL-----KAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
..+.++.+ .....+..+...+....|++ +.++..|..++.+-. +.+... .......
T Consensus 169 --------~~~lVR~f-~lgsq~EgcvvDd~~g~Lyv-~eEd~GIw~~da~p~~~~~~~~v~~~---------~~g~l~a 229 (355)
T 3amr_A 169 --------SGKKVRAF-KMNSQTEGMAADDEYGRLYI-AEEDEAIWKFSAEPDGGSNGTVIDRA---------DGRHLTR 229 (355)
T ss_dssp --------EEEEEEEE-ECSSCEEEEEEETTTTEEEE-EETTTEEEEEECSTTSCSCCEEEEEB---------SSSSBCS
T ss_pred --------cceEEEEe-cCCCCcceEEEcCCCCeEEE-ecccceEEEEeCCcCCCCCceEEEEe---------cCCcccc
Confidence 01111122 22347888888888888887 546766666665421 222111 0111123
Q ss_pred CeeEEEe--CCCCC-EEEEEe-cCCeEEEEEcc
Q 010390 276 GISSLSQ--DSNGV-FLTASC-MDHRIYLYNVL 304 (512)
Q Consensus 276 ~i~~~~~--~~~~~-~l~~~~-~dg~i~i~d~~ 304 (512)
.+..|++ .++++ +|++++ .+++..+||..
T Consensus 230 DvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 230 DIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 5777777 45555 666666 66799999974
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.56 E-value=0.049 Score=50.20 Aligned_cols=278 Identities=11% Similarity=0.081 Sum_probs=167.9
Q ss_pred cEEEEe---eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390 66 HIFAVS---DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC 142 (512)
Q Consensus 66 ~~latg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 142 (512)
+|+.+- +.+..|.|.|+.++... .+.-..-. +.-.+|..+.||.-. ..++.|+|+++.+.
T Consensus 36 kyicVrE~~~~~~~vvIiDl~~~~~~------------~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~k 98 (494)
T 1bpo_A 36 KFICIREKVGEQAQVVIIDMNDPSNP------------IRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSK 98 (494)
T ss_dssp TEEEEEECCTTCCEEEEEETTSTTSC------------EEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEE
T ss_pred ceEEEEecCCCCCeEEEEECCCCCcc------------eecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhh
Confidence 455553 33447999998775321 11111111 234577777777554 67899999999988
Q ss_pred eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390 143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222 (512)
Q Consensus 143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (512)
+..+.-.. .|.-=.|-.. +.|+-.+. ..|.-|++......... + .+...+ ....
T Consensus 99 lks~~~~e-~VvfWkWis~--~~l~lVT~-taVyHWsi~~~s~P~kv------F--------------dR~~~L--~~~Q 152 (494)
T 1bpo_A 99 MKAHTMTD-DVTFWKWISL--NTVALVTD-NAVYHWSMEGESQPVKM------F--------------DRHSSL--AGCQ 152 (494)
T ss_dssp EEEEECSS-CCCEEEEEET--TEEEEECS-SEEEEEESSSSCCCEEE------E--------------ECCGGG--TTCE
T ss_pred hcceecCC-CceEEEecCC--CeEEEEcC-CeeEEecccCCCCchhh------e--------------ecchhc--ccce
Confidence 88776443 5555566643 45665554 58999999753222110 0 000011 1345
Q ss_pred EEEEEEeecCCEEEEEee------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC---CEEEEEe
Q 010390 223 ITSVLYLKDEVSIATASA------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG---VFLTASC 293 (512)
Q Consensus 223 v~~~~~~~~~~~l~~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~ 293 (512)
|..-..+++.++++.+|- -.|.+.+|..+..... ..++|......+.+..+. .+++.+.
T Consensus 153 IInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ------------~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ------------PIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp EEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE------------EECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred EEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc------------hheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 666677888888877663 2467888888765543 355555555444444321 2333343
Q ss_pred c---CCeEEEEEcccC-CCCceE-------eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390 294 M---DHRIYLYNVLQL-DKGPIQ-------HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362 (512)
Q Consensus 294 ~---dg~i~i~d~~~~-~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h 362 (512)
. .+.+++.++... ...+.. .+.......+...+..++....+..-+.-|.|++||+.++.+. ..-+-.
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i-~~nrIs 299 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRIS 299 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE-EEEECC
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee-eeeccc
Confidence 3 278999998543 111111 1122233567778999999999999999999999999998773 333444
Q ss_pred cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
...|..-+-.... .=++.....|.|.--.++....+.
T Consensus 300 ~~~iF~t~~~~~~-~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 300 GETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp SSCEEEEEEETTT-TEEEEEETTCEEEEEEECTTTHHH
T ss_pred CCceEEecccCCC-CcEEEEccCceEEEEEEccccchh
Confidence 5566555555444 345556678877777777666543
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.51 E-value=0.038 Score=48.80 Aligned_cols=224 Identities=14% Similarity=0.172 Sum_probs=133.0
Q ss_pred CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
.+..|.|.|+.++..+..-.- .--+.-.+|.. +.+|.-. ...++++|+++.+.++...
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~-~ViALra-g~~LQiFnletK~klks~~----------------- 104 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT----------------- 104 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEEC---CCSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEE-----------------
T ss_pred CCCEEEEEECCCCCCcccccc---ccceeeeCCCc-cEEEEec-CCeEEEechHHhhhhccee-----------------
Confidence 344799999988654422111 11123357865 6666554 6799999999765443221
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
....|.-=.|..+...-++ . +..|+-|++.....+......+. .+ ....|..-..+++.+
T Consensus 105 -----------~~e~VvfWkWis~~~L~lV-T--~taVyHWs~~~~s~P~kvFdR~~----~L--~~~QIInY~~d~~~k 164 (365)
T 2xzh_A 105 -----------MTDDVTFWKWISLNTVALV-T--DNAVYHWSMEGESQPVKMFDRHS----SL--AGCQIINYRTDAKQK 164 (365)
T ss_dssp -----------CSSCEEEEEECSSSEEEEE-E--SSEEEEEESSTTCCCEEEEECCG----GG--TTCEEEEEEECTTSC
T ss_pred -----------cCCccEEEEecCCCeEEEE-c--CCcEEEEcccCCCCCceeeecch----hc--ccceEEEEEECCCCC
Confidence 1235666666655554444 3 68899999986444433322222 11 235688888899999
Q ss_pred EEEEEec-------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC-----CEEEEecC---CCCEEEEecCCC
Q 010390 288 FLTASCM-------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA-----SHILSGSS---DGNAYVWQVNKP 352 (512)
Q Consensus 288 ~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~l~~g~~---dg~i~iw~~~~~ 352 (512)
+++..+- .|.+.+|..+. ...+.+++|... . ..+-.+| .+++.+.. .+.++|-++...
T Consensus 165 W~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~ieGhaa~--F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~ 237 (365)
T 2xzh_A 165 WLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAAS--F--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 237 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTT---TEEEEECCSEEE--E--EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSC
T ss_pred EEEEEeEeccCCccceeEEEEeecc---cccceeeeeeee--e--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 8776552 36788888743 444555555311 1 1222222 23333322 257999998543
Q ss_pred --CCCCc------eec---cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 353 --QADPI------KLK---SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 353 --~~~~~------~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
..... .+. .-.+-..++..++.. ..+..-..-|.|++||++++.++..
T Consensus 238 ~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 238 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp CTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCCCCcccccceeeCCccccCCceEEEEecccC-CEEEEEeCCcEEEEEEcccCcEEEE
Confidence 11110 011 123455677777776 6888899999999999999999876
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.47 E-value=0.053 Score=49.71 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=60.0
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC---CCEEEEEeC
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE---DTNILTASG 128 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~---~~~l~s~~~ 128 (512)
.+.+|+| .|||+++++ ..+|.|++++ . +... ....+..+.........|+|+|+ +..|..+..
T Consensus 32 ~P~~ia~---~pdG~l~V~-e~~g~I~~i~-~-g~~~--------~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 32 VPWALAF---LPDGGMLIA-ERPGRIRLFR-E-GRLS--------TYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp CEEEEEE---CTTSCEEEE-ETTTEEEEEE-T-TEEE--------EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEE---cCCCeEEEE-eCCCeEEEEE-C-CCcc--------EeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence 4568888 999985555 5679999998 2 2110 00001112223467899999998 555554433
Q ss_pred -C-----CcEEEEeCCCCe-----e-eeccc---CcCCCEEEEEeeCCCCCeEEEEe
Q 010390 129 -D-----QTIKIWDAEKKK-----C-TGALM---GHTGSIKSLCSHPTNSDILVSGS 170 (512)
Q Consensus 129 -d-----g~i~iwd~~~~~-----~-~~~~~---~h~~~v~~l~~~~~~~~~l~s~~ 170 (512)
. +.|..++...+. . +..+. ........++|.|++ .++++.+
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G 153 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTG 153 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECC
T ss_pred cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEEC
Confidence 2 568888876431 1 11122 111123578999988 6666644
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.47 E-value=0.17 Score=54.17 Aligned_cols=99 Identities=11% Similarity=0.146 Sum_probs=55.5
Q ss_pred CCEEEEEe----------cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390 286 GVFLTASC----------MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD 355 (512)
Q Consensus 286 ~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 355 (512)
..++++|. ..|.|.+|++.. ..+..+........+.+++-- +|+ |++|- ...|++|++...+..
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~---~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L 917 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSD---GKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKEL 917 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEET---TEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEEC---CEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceE
Confidence 46888876 348899999863 234444444555666665532 344 44443 467999999765432
Q ss_pred CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
..... +-..|..+.....+ ++++.|..-..|.+..
T Consensus 918 ~~~~~-~~~~i~~~~l~~~~-~~I~vgD~~~Sv~~~~ 952 (1158)
T 3ei3_A 918 RTECN-HYNNIMALYLKTKG-DFILVGDLMRSVLLLA 952 (1158)
T ss_dssp EEEEE-ECCCSCEEEEEEET-TEEEEEESSBCEEEEE
T ss_pred EEEee-ccccEEEEEEeccC-CEEEEEEhhheEEEEE
Confidence 11111 11123222222235 6888888666666644
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.28 E-value=0.1 Score=48.09 Aligned_cols=226 Identities=14% Similarity=0.158 Sum_probs=134.5
Q ss_pred CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
.+..|.|.|+.++..+..-.- .--+.-.+|.. +.++.-. ..++.++|+++...+....
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~----------------- 103 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT----------------- 103 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEEC---CCSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEE-----------------
T ss_pred CCCeEEEEECCCCCcceeccc---ccceeeeCCCC-cEEEEec-CCeEEEEchHHhhhhccee-----------------
Confidence 345799999988654422111 11234467866 6666554 6799999998765443221
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
....|.--.|..+...-++ .+..|+-|++.....+......+. .+ ....|..-..+++.+
T Consensus 104 -----------~~e~VvfWkWis~~~l~lV---T~taVyHWsi~~~s~P~kvFdR~~----~L--~~~QIInY~~d~~~k 163 (494)
T 1bpo_A 104 -----------MTDDVTFWKWISLNTVALV---TDNAVYHWSMEGESQPVKMFDRHS----SL--AGCQIINYRTDAKQK 163 (494)
T ss_dssp -----------CSSCCCEEEEEETTEEEEE---CSSEEEEEESSSSCCCEEEEECCG----GG--TTCEEEEEEECTTSS
T ss_pred -----------cCCCceEEEecCCCeEEEE---cCCeeEEecccCCCCchhheecch----hc--ccceEEEEEECCCCC
Confidence 1234555667665554444 378899999976444433322222 11 235688888899999
Q ss_pred EEEEEec-------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC---CCEEEEecC---CCCEEEEecCCCC-
Q 010390 288 FLTASCM-------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN---ASHILSGSS---DGNAYVWQVNKPQ- 353 (512)
Q Consensus 288 ~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~g~~---dg~i~iw~~~~~~- 353 (512)
+++..+- .|.+.+|.... .....+.+|... ...+....+ ...++.+.. .+.++|-++....
T Consensus 164 W~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~ieGhaa~--F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~ 238 (494)
T 1bpo_A 164 WLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAAS--FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT 238 (494)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESTT---CCEEEECCSEEE--EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT
T ss_pred eEEEEeecccCCcccceEEEeeccc---cccchheeeeee--eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc
Confidence 8875542 36788888743 444555555321 111111111 123333332 3789999986531
Q ss_pred --CCC--ce---e---ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 354 --ADP--IK---L---KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 354 --~~~--~~---~---~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
... .. + ..-.+-..++..++.. ..+.....-|.|+++|++++.++..
T Consensus 239 ~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 239 GNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp TCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeee
Confidence 100 00 1 1123456678888877 7888999999999999999998876
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.22 E-value=0.061 Score=48.00 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=106.6
Q ss_pred CCcEEEEee-CC-----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC-----CcE
Q 010390 64 NSHIFAVSD-ED-----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD-----QTI 132 (512)
Q Consensus 64 ~~~~latg~-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-----g~i 132 (512)
++.+++.|+ .+ ..+.+||..+..-.. +..+.........+. -++..++.|+.+ ..+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-----------~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~ 80 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-----------LPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSV 80 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-----------CCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCE
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-----------CCCCChhhccccEEE--ECCEEEEEcCCCCCccCceE
Confidence 556777776 33 368888876653211 111111111111122 256677777754 468
Q ss_pred EEEeCCCCe---e--eecccCcCCCEEEEEeeCCCCCeEEEEeCCC-----cEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 133 KIWDAEKKK---C--TGALMGHTGSIKSLCSHPTNSDILVSGSRDG-----SFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 133 ~iwd~~~~~---~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
.+||+.+.+ - +..+......-.++.+ ++ .+++.|+.++ .+.+||+.+.+-...
T Consensus 81 ~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-------------- 143 (301)
T 2vpj_A 81 ECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSML-------------- 143 (301)
T ss_dssp EEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEE--------------
T ss_pred EEEECCCCCCCeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCeEEEC--------------
Confidence 999987765 2 2222211112222222 33 6777776543 467777664321110
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecC-----CeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-----SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
............+. -++..++. |+.+ ..+.+||+.+.+-......+. .....
T Consensus 144 -----------~~~p~~r~~~~~~~--~~~~iyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~---------~r~~~ 200 (301)
T 2vpj_A 144 -----------GDMQTAREGAGLVV--ASGVIYCL-GGYDGLNILNSVEKYDPHTGHWTNVTPMAT---------KRSGA 200 (301)
T ss_dssp -----------EECSSCCBSCEEEE--ETTEEEEE-CCBCSSCBCCCEEEEETTTTEEEEECCCSS---------CCBSC
T ss_pred -----------CCCCCCcccceEEE--ECCEEEEE-CCCCCCcccceEEEEeCCCCcEEeCCCCCc---------ccccc
Confidence 00000001111122 24444444 5443 458889988765433211111 01111
Q ss_pred eEEEeCCCCCEEEEEecC-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC-----CEEEE
Q 010390 278 SSLSQDSNGVFLTASCMD-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG-----NAYVW 347 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iw 347 (512)
..+.+ ++.+++.|+.+ ..+.+||+.+..-..+..+...... ...+. -++++++.|+.++ .+.+|
T Consensus 201 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~--~~~~~--~~~~i~v~GG~~~~~~~~~v~~y 274 (301)
T 2vpj_A 201 GVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY--VGATV--LRGRLYAIAGYDGNSLLSSIECY 274 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS--CEEEE--ETTEEEEECCBCSSSBEEEEEEE
T ss_pred eEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc--eeEEE--ECCEEEEEcCcCCCcccccEEEE
Confidence 22222 56777777754 4688999865432222211111111 11122 2567777777553 46777
Q ss_pred ecCCC
Q 010390 348 QVNKP 352 (512)
Q Consensus 348 ~~~~~ 352 (512)
|..+.
T Consensus 275 d~~~~ 279 (301)
T 2vpj_A 275 DPIID 279 (301)
T ss_dssp ETTTT
T ss_pred cCCCC
Confidence 77654
No 310
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.18 E-value=0.072 Score=47.74 Aligned_cols=106 Identities=8% Similarity=0.076 Sum_probs=53.1
Q ss_pred cCCCcEEEEeeCC----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----C----
Q 010390 62 SKNSHIFAVSDED----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----D---- 129 (512)
Q Consensus 62 s~~~~~latg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----d---- 129 (512)
.-++.+++.|+.+ ..+.+||..+..-... ...+. ....| +++.. ++..++.|+. +
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~------~~~p~-~r~~~-----~~~~~-~~~lyv~GG~~~~~~~~~~ 88 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL------ADLQV-PRSGL-----AGCVV-GGLLYAVGGRNNSPDGNTD 88 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEEC------CCCSS-CCBSC-----EEEEE-TTEEEEECCEEEETTEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC------CCCCc-ccccc-----eEEEE-CCEEEEECCCcCCCCCCee
Confidence 4567788888742 3588888776532110 00000 01112 12222 5666777765 2
Q ss_pred -CcEEEEeCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCC-----CcEEEEeCCCC
Q 010390 130 -QTIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRD-----GSFAIWDLRCK 183 (512)
Q Consensus 130 -g~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~ 183 (512)
..+.+||+.+.+-.. .+......-..+.+ ++ .+++.|+.+ ..+.+||+.+.
T Consensus 89 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 89 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTT
T ss_pred cceEEEECCCCCeEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCC
Confidence 468899988765322 22211112222222 33 677776643 35777777654
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.16 E-value=0.052 Score=48.48 Aligned_cols=109 Identities=10% Similarity=0.031 Sum_probs=56.2
Q ss_pred CCCEEEEEecC-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-----CCEEEEecCCCCC
Q 010390 285 NGVFLTASCMD-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-----GNAYVWQVNKPQA 354 (512)
Q Consensus 285 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iw~~~~~~~ 354 (512)
++++++.|+.+ ..+.+||+.+..-..+..+...... ...+. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG--AGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS--CEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc--ceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 56777777654 4688899765332222111111111 11122 256777777764 4589999876532
Q ss_pred CC-ceeccccCCeEEEEeCCCCCCeEEEEeCC-----CcEEEEeCCCCcccc
Q 010390 355 DP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDD-----YTVRLWSLENSRCSS 400 (512)
Q Consensus 355 ~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~ 400 (512)
.. ..+.........+.+ ++ .+++.|+.+ ..+.+||+++.+...
T Consensus 235 ~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 235 TTVTSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred EECCCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 10 001111111222333 45 677777765 467888888766443
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.15 E-value=0.096 Score=46.73 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=34.1
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCCC-----cEEEEeCCCC
Q 010390 119 EDTNILTASGD-----QTIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRDG-----SFAIWDLRCK 183 (512)
Q Consensus 119 ~~~~l~s~~~d-----g~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~ 183 (512)
++..++.|+.+ ..+.+||..+.+-. ..+......-.++.+ ++ .+++.|+.++ .+.+||+.+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~ 134 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSN 134 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCC
Confidence 66677777754 35889998876532 222211111222222 34 6777777653 4667776643
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.12 E-value=0.16 Score=46.55 Aligned_cols=102 Identities=8% Similarity=0.076 Sum_probs=58.9
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccccccccee---ccccCCCcEEEEEEecC---CCEEE
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARIS---DWVAHQNAIFDLCWIKE---DTNIL 124 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~V~~l~~s~~---~~~l~ 124 (512)
..+.+|+| .|||+++++ ..+|.|+++|. ++. ..+. .+.........|+++|+ +..|.
T Consensus 29 ~~P~~ia~---~pdG~l~V~-e~~g~I~~~d~-~G~------------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~ly 91 (354)
T 3a9g_A 29 EVPWSIAP---LGGGRYLVT-ERPGRLVLISP-SGK------------KLVASFDVANVGEAGLLGLALHPEFPKKSWVY 91 (354)
T ss_dssp SCEEEEEE---EETTEEEEE-ETTTEEEEECS-SCE------------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred CCCeEEEE---cCCCeEEEE-eCCCEEEEEeC-CCc------------eEeeccceeecCCCceeeEEeCCCCCcCCEEE
Confidence 34678888 889985554 56699999973 221 0111 11223457899999997 55555
Q ss_pred EEeC----C----CcEEEEeCCCC-------eee-ecccC-cCCCEEEEEeeCCCCCeEEEEe
Q 010390 125 TASG----D----QTIKIWDAEKK-------KCT-GALMG-HTGSIKSLCSHPTNSDILVSGS 170 (512)
Q Consensus 125 s~~~----d----g~i~iwd~~~~-------~~~-~~~~~-h~~~v~~l~~~~~~~~~l~s~~ 170 (512)
.+.. + +.|..|+.... +.+ ..+.. .......|+|.|++ .++++.+
T Consensus 92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G 153 (354)
T 3a9g_A 92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTG 153 (354)
T ss_dssp EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECC
T ss_pred EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEEC
Confidence 4432 3 56777776544 111 11221 11124578999988 6666644
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.10 E-value=0.16 Score=46.46 Aligned_cols=109 Identities=10% Similarity=0.131 Sum_probs=57.8
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC---CCEEEEEe-
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE---DTNILTAS- 127 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~---~~~l~s~~- 127 (512)
.+.+|+| .|+|++|.++...|.|++++.+...... . .. ..............|+|+|+ +..|..+.
T Consensus 19 ~P~~i~~---~pdG~~l~V~e~~G~i~~~~~~g~~~~~--~----~~-~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 19 HPWALAF---LPDNHGMLITLRGGELRHWQAGKGLSAP--L----SG-VPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp SEEEEEE---CSTTCCEEEEETTTEEEEEETTTEECCC--C----BS-CCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CcEEEEE---cCCCCEEEEEeCCceEEEEeCCCceeeE--e----cC-CcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 4578888 9999934445568999999854321100 0 00 00111223457789999995 45554332
Q ss_pred C-------CCcEEEEeCCCC-------eee-ecccC---cCCCEEEEEeeCCCCCeEEEEeC
Q 010390 128 G-------DQTIKIWDAEKK-------KCT-GALMG---HTGSIKSLCSHPTNSDILVSGSR 171 (512)
Q Consensus 128 ~-------dg~i~iwd~~~~-------~~~-~~~~~---h~~~v~~l~~~~~~~~~l~s~~~ 171 (512)
. ...|..|++..+ +.+ ..+.. .......|.|.|++ .++++.+.
T Consensus 89 ~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd 149 (353)
T 2g8s_A 89 EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE 149 (353)
T ss_dssp EECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred CCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence 2 234666665432 111 11211 11123579999988 66665543
No 315
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.10 E-value=0.15 Score=46.05 Aligned_cols=240 Identities=8% Similarity=0.009 Sum_probs=118.6
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---eeec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK---CTGA-LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
...+.+|.|.+++..++ ++.+|.|. .....++ .+.. .......+.+|.|.+ + ..++ ++.++.|.. ....+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~-~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWI-VGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEE-EEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEE-EECCCeEEE-ECCCC
Confidence 35789999987777676 45677653 3333332 2211 112244688999976 3 4444 455564433 22222
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
+.-... .........+..+.+.+++..+++ + .++.|.. ..+.++.-...
T Consensus 109 ~tW~~~------------------------~~~~~~~~~~~~i~~~~~~~~~~~-~-~~g~v~~-S~DgG~tW~~~---- 157 (327)
T 2xbg_A 109 QSWSQI------------------------PLDPKLPGSPRLIKALGNGSAEMI-T-NVGAIYR-TKDSGKNWQAL---- 157 (327)
T ss_dssp SSCEEC------------------------CCCTTCSSCEEEEEEEETTEEEEE-E-TTCCEEE-ESSTTSSEEEE----
T ss_pred CCceEC------------------------ccccCCCCCeEEEEEECCCCEEEE-e-CCccEEE-EcCCCCCCEEe----
Confidence 211100 000011234567777766655443 4 3554422 11222221111
Q ss_pred ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390 264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN 343 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 343 (512)
.......+..+.+.+++.+++++...+..+-.|-.. ..-.... ......+..+++.++++.++++ .+|.
T Consensus 158 ------~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG---~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~-~~G~ 226 (327)
T 2xbg_A 158 ------VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQ---TAWEPHN-RTTSRRLHNMGFTPDGRLWMIV-NGGK 226 (327)
T ss_dssp ------ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTC---SSCEEEE-CCSSSCEEEEEECTTSCEEEEE-TTTE
T ss_pred ------ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCC---CceeECC-CCCCCccceeEECCCCCEEEEe-CCce
Confidence 111224578899999988877664433333333201 1111111 1122345678888988766554 4677
Q ss_pred EEEEecCCCCC--CCcee-ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 344 AYVWQVNKPQA--DPIKL-KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 344 i~iw~~~~~~~--~~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
+++.+.+.++. ..... ..+...+.++++.+++ .+++.+ .+|.| .+..+.|+.
T Consensus 227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g-~~g~i-~~S~DgG~t 281 (327)
T 2xbg_A 227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAG-GAGAL-LCSQDGGQT 281 (327)
T ss_dssp EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEE-STTCE-EEESSTTSS
T ss_pred EEEecCCCCCeeEeccCCcccCCcceEEEEecCCC-EEEEEe-CCCeE-EEeCCCCcc
Confidence 77764221211 01100 0123458899999876 555554 46766 455565543
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.08 E-value=0.13 Score=47.46 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=96.6
Q ss_pred EEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390 227 LYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL 306 (512)
Q Consensus 227 ~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 306 (512)
....++..++++ .++.||.-++...........+. ......|..+..+|+|.+|+..+ +..|.|..+...
T Consensus 27 ~~~~n~t~i~~a--~~n~iR~~~i~~~~~Yk~L~~~~-------~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~ 96 (452)
T 3pbp_A 27 FSSQNGTRIVFI--QDNIIRWYNVLTDSLYHSLNFSR-------HLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWG 96 (452)
T ss_dssp EEETTTTEEEEE--ETTEEEEEETTTCSSCEEEECTT-------TCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTT
T ss_pred EEEcCCCEEEEE--ECCEEEEEECCCCCcceEEecCc-------ccccCceeEEEECCCCCEEEEec-CCeEEEEEecCc
Confidence 344567777664 47889988887533221111000 00123578899999999999885 558888887632
Q ss_pred CCC----------ceEeeeece----eceeEEEEEECCC---CCEEEEecCCCCEEEEecCCCCCCCceec---------
Q 010390 307 DKG----------PIQHFSGCR----IESFYVKSEICPN---ASHILSGSSDGNAYVWQVNKPQADPIKLK--------- 360 (512)
Q Consensus 307 ~~~----------~~~~~~~~~----~~~~~~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~~~~~~~--------- 360 (512)
... ..+.+.-.. ....+..+.|+|- +..|++-..|+.|++||+.........+.
T Consensus 97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d 176 (452)
T 3pbp_A 97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLD 176 (452)
T ss_dssp CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESC
T ss_pred cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCC
Confidence 111 111222111 2356889999996 56788999999999999986332222222
Q ss_pred cccCCeEEEEeCCCCCCeEEEEe--CCCcEEEE
Q 010390 361 SHDGEVTAVNWCPNEAGKIVTSS--DDYTVRLW 391 (512)
Q Consensus 361 ~h~~~v~~v~~~~~~~~~l~s~~--~dg~i~vw 391 (512)
.+...|.+++|.+++ -.|...+ .+|.|+-.
T Consensus 177 ~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 177 ARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SSCCCEEEEEECTTS-SCEEEEECTTSCEEEEE
T ss_pred cccceEEEEEEcCCC-cEEEEEecCCCCCEEEE
Confidence 223578999999976 6666644 77877654
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.08 E-value=0.17 Score=46.27 Aligned_cols=249 Identities=8% Similarity=-0.008 Sum_probs=124.1
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-eeecc---cCcCCCEEEEEeeCC---CCCeEEEEeC---C----C
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-CTGAL---MGHTGSIKSLCSHPT---NSDILVSGSR---D----G 173 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---~~h~~~v~~l~~~~~---~~~~l~s~~~---d----g 173 (512)
-.....|+|.|+|++++ +..+|.|++++ .+++ .+..+ .........|+++|+ +..++++-.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34678999999997555 55679999997 4554 22221 112346889999997 4345454432 2 4
Q ss_pred cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec------------
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV------------ 241 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~------------ 241 (512)
.|..|+........ .....+.. .......| ....++|.|++..+++.|..
T Consensus 106 ~v~r~~~~~~~~~~--~~~~~l~~--------------~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 106 RVIRGRLDGSTFKL--KEVKTLID--------------GIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEECSSSCCE--EEEEEEEE--------------EEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEEECCCCcCc--CccEEEEE--------------cCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCC
Confidence 56667665331000 00000000 00000112 34678999999877765531
Q ss_pred CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecCC---eEEEEEcccC-----------
Q 010390 242 NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDH---RIYLYNVLQL----------- 306 (512)
Q Consensus 242 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~----------- 306 (512)
.|.|.-++.... .... .+.... ............++|++ ++.++++-...+ .|.+..--..
T Consensus 168 ~G~I~ri~~dG~-~p~~--npf~~~-~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~ 243 (354)
T 3a9g_A 168 AGKILRVDEEGR-PPAD--NPFPNS-PIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG 243 (354)
T ss_dssp SSEEEEECTTSC-CCTT--SSSTTC-CEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCC
T ss_pred CeEEEEEcCCCC-CCCC--CCCCCC-cEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCC
Confidence 244555554321 0000 000000 01111122356899999 566544433222 2433321000
Q ss_pred ---CCCceEeeeeceeceeEEEEEEC-------CCCCEEEEecCCCCEEEEecCCCCCCC--ce-eccccCCeEEEEeCC
Q 010390 307 ---DKGPIQHFSGCRIESFYVKSEIC-------PNASHILSGSSDGNAYVWQVNKPQADP--IK-LKSHDGEVTAVNWCP 373 (512)
Q Consensus 307 ---~~~~~~~~~~~~~~~~~~~~~~s-------~~~~~l~~g~~dg~i~iw~~~~~~~~~--~~-~~~h~~~v~~v~~~~ 373 (512)
...+...+. ........++|. .+|.++++.-..+.|...++....... .. +.+-...+..+++.|
T Consensus 244 ~~~~~~p~~~~~--~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p 321 (354)
T 3a9g_A 244 RGEFVDPVIDTG--SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD 321 (354)
T ss_dssp CTTSCCCSEECT--TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT
T ss_pred CCCCcCCEeecC--CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC
Confidence 001112210 011234567773 567777777777788888887532111 12 222245789999999
Q ss_pred CCCCeEEEEe
Q 010390 374 NEAGKIVTSS 383 (512)
Q Consensus 374 ~~~~~l~s~~ 383 (512)
|| .++++..
T Consensus 322 DG-~lyv~~~ 330 (354)
T 3a9g_A 322 DG-GILISTS 330 (354)
T ss_dssp TS-CEEEEEC
T ss_pred CC-cEEEEEe
Confidence 98 6666654
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.01 E-value=0.17 Score=45.14 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=52.8
Q ss_pred CcEEEEeeCC--CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC----CcEEEEeCC
Q 010390 65 SHIFAVSDED--GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD----QTIKIWDAE 138 (512)
Q Consensus 65 ~~~latg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~i~iwd~~ 138 (512)
+.+++.|+.+ ..+.+||..+..-.. +..+......-..+. -++..++.|+.+ ..+.+||+.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~-----------~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~ 78 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTD-----------IRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVV 78 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEE-----------CCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETT
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEec-----------CCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCC
Confidence 4466666643 568888887653211 111111111111222 266677777754 668899988
Q ss_pred CCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCC------CcEEEEeCCCC
Q 010390 139 KKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRD------GSFAIWDLRCK 183 (512)
Q Consensus 139 ~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~ 183 (512)
+.+-. ..+......-..+.+ ++ .+++.|+.+ ..+.+||..+.
T Consensus 79 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 79 KDSWYSKLGPPTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp TTEEEEEECCSSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred CCeEEECCCCCccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 77532 222211111122222 33 677777765 45778887654
No 319
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.95 E-value=0.23 Score=53.09 Aligned_cols=271 Identities=11% Similarity=0.061 Sum_probs=154.1
Q ss_pred CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCC
Q 010390 73 EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGS 152 (512)
Q Consensus 73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~ 152 (512)
....|.|.|+..+... .+.-..-. +.-.+|..+.|+.-. ..++.|+|+++.+.+..+.-. .+
T Consensus 46 ~~~~vvIidl~~~~~~------------~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~ 107 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNP------------IRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DD 107 (1630)
T ss_pred CCceEEEEECCCCCCc------------ccccccch----hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CC
Confidence 3447999998775321 11111111 233567666666443 678999999998877776643 45
Q ss_pred EEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecC
Q 010390 153 IKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE 232 (512)
Q Consensus 153 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 232 (512)
|.-=.|-.. +.|+-.+. ..|..|++.....+..... +...+ ....|..-..+++.
T Consensus 108 VvfWkWis~--~~l~lVT~-~aVyHW~~~~~s~P~k~fd--------------------R~~~L--~~~QIinY~~d~~~ 162 (1630)
T 1xi4_A 108 VTFWKWISL--NTVALVTD-NAVYHWSMEGESQPVKMFD--------------------RHSSL--AGCQIINYRTDAKQ 162 (1630)
T ss_pred ceEEEecCC--CeeEEEcC-CeEEEeccCCCCccHHHHh--------------------cchhc--ccCeeEEeeeCCCC
Confidence 655566543 45555543 5899999975322211100 00011 13456666777888
Q ss_pred CEEEEEee------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC--C-CCEEEEEec---CCeEEE
Q 010390 233 VSIATASA------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS--N-GVFLTASCM---DHRIYL 300 (512)
Q Consensus 233 ~~l~~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~l~~~~~---dg~i~i 300 (512)
++++..|- ..|.+.+|..+..... ...+|......+.... . ...++.+.. .+.++|
T Consensus 163 kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ------------~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 163 KWLLLTGISAQQNRVVGAMQLYSVDRKVSQ------------PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred CeEEEEeeccCCCcccceeeeeecccccch------------hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 88887663 3478888887765433 2444444443333321 1 122322222 378999
Q ss_pred EEcccC-CCCceE-------eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeC
Q 010390 301 YNVLQL-DKGPIQ-------HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC 372 (512)
Q Consensus 301 ~d~~~~-~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~ 372 (512)
.++... ...+.. .+.......+.+.+..++....+..-+.-|.|++||+.++... ..-+-....|...+-.
T Consensus 231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i-~~~ris~~~iF~~~~~ 309 (1630)
T 1xi4_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRISGETIFVTAPH 309 (1630)
T ss_pred EecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh-hhccccCCceEEeccC
Confidence 998543 111111 1222233456677888998889988999999999999998763 3333334455544444
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 373 PNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 373 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
... .=++.....|.|.--.++....+.
T Consensus 310 ~~~-~g~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 310 EAT-AGIIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred CCC-CceEEEcCCceEEEEEEccchhhh
Confidence 433 234444466766666666555443
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.93 E-value=0.23 Score=45.42 Aligned_cols=60 Identities=15% Similarity=0.332 Sum_probs=38.1
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee---ecc----cCcCCCEEEEEeeCC---CCCeEEEE
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT---GAL----MGHTGSIKSLCSHPT---NSDILVSG 169 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~----~~h~~~v~~l~~~~~---~~~~l~s~ 169 (512)
.....|+|.|+|++|+.+...|.|++++.. ++.. ..+ .........|+++|+ +..+.++-
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 456899999999834445578999999853 4322 111 112346789999996 43444443
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.90 E-value=0.16 Score=45.37 Aligned_cols=230 Identities=9% Similarity=0.048 Sum_probs=108.1
Q ss_pred EEEEEeC--CCcEEEEeCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCCccccc
Q 010390 122 NILTASG--DQTIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 122 ~l~s~~~--dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~ 193 (512)
.++.|+. ...+.+||..+++-.. .+......-..+.+ ++ .+++.|+.+ ..+.+||+.+.+-...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~----- 85 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSK----- 85 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TT-EEEEECCBSSSBCCEEEEEETTTTEEEEE-----
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CC-EEEEEeCCCCCCcceEEEEeCCCCeEEEC-----
Confidence 4445554 3568899988875322 22211112222222 33 677777754 5677777765421110
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC------CeEEEEeccCccceecccCCCcccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN------SIVKFWDTRNLKAQITQAWPHAESS 267 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~ 267 (512)
............+.+ ++..++. |+.+ ..+.+||..+.+-......+..
T Consensus 86 --------------------~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--- 139 (306)
T 3ii7_A 86 --------------------LGPPTPRDSLAACAA--EGKIYTS-GGSEVGNSALYLFECYDTRTESWHTKPSMLTQ--- 139 (306)
T ss_dssp --------------------ECCSSCCBSCEEEEE--TTEEEEE-CCBBTTBSCCCCEEEEETTTTEEEEECCCSSC---
T ss_pred --------------------CCCCccccceeEEEE--CCEEEEE-CCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC---
Confidence 000000111111222 4444444 5444 4588899887653332111110
Q ss_pred ccccccccCeeEEEeCCCCCEEEEEec---------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390 268 SAKETRLHGISSLSQDSNGVFLTASCM---------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 338 (512)
. .....+.+ ++++++.|+. -..+.+||+.+..-..+..+...... ...+.+ ++++++.|
T Consensus 140 --r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~--~~~i~v~G 207 (306)
T 3ii7_A 140 --R----CSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN--HGLVFV--KDKIFAVG 207 (306)
T ss_dssp --C----BSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS--CEEEEE--TTEEEEEC
T ss_pred --c----ceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc--ceEEEE--CCEEEEEe
Confidence 1 11112222 5666666653 34588899865432222211111111 111222 56777777
Q ss_pred cCC-----CCEEEEecCCCCCC-CceeccccCCeEEEEeCCCCCCeEEEEeCC-----CcEEEEeCCCCcccc
Q 010390 339 SSD-----GNAYVWQVNKPQAD-PIKLKSHDGEVTAVNWCPNEAGKIVTSSDD-----YTVRLWSLENSRCSS 400 (512)
Q Consensus 339 ~~d-----g~i~iw~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~ 400 (512)
+.+ ..+.+||..+.+-. +..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-..
T Consensus 208 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 208 GQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp CEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 754 35888998765311 1111111112233333 44 688888754 467888888766443
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.88 E-value=0.15 Score=45.46 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=54.8
Q ss_pred CCCEEEEEecC-------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-----CCEEEEecCCC
Q 010390 285 NGVFLTASCMD-------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-----GNAYVWQVNKP 352 (512)
Q Consensus 285 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iw~~~~~ 352 (512)
++++++.|+.+ ..+.+||+.+..-..+..+...... ...+. -++++++.|+.+ ..+.+||..+.
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG--AGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS--CEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc--ccEEE--ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 56666666542 4588899765332222111111111 11122 256777887764 36889998765
Q ss_pred CCCC-ceeccccCCeEEEEeCCCCCCeEEEEeCCC-----cEEEEeCCCCcccc
Q 010390 353 QADP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDDY-----TVRLWSLENSRCSS 400 (512)
Q Consensus 353 ~~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~ 400 (512)
+-.. ..+......-..+.+ ++ .+++.|+.++ .+.+||+.+.+...
T Consensus 231 ~W~~~~~~~~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 281 (302)
T 2xn4_A 231 AWRQVADMNMCRRNAGVCAV--NG-LLYVVGGDDGSCNLASVEYYNPTTDKWTV 281 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CEeeCCCCCCccccCeEEEE--CC-EEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence 3210 001000111122222 44 6777777653 48888888776543
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.77 E-value=0.21 Score=46.02 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=97.6
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeeeecccCc----CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc-c-
Q 010390 117 IKEDTNILTASGDQTIKIWDAEKKKCTGALMGH----TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN-C- 190 (512)
Q Consensus 117 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~- 190 (512)
+.+|..|+.+- ++.||.-++......+.+... -..|..+..+|+| .+||..+. ..|.|-.+..+...... .
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFND-NEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEecC-CeEEEEEecCccccCccccc
Confidence 34777777664 578888888754444444322 2257889999988 78877765 58999988743322211 0
Q ss_pred -ccceeeeccccccccccccccccee-cccccccEEEEEEeecC---CEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390 191 -AESFVFSSAVVKGAHLLSQSKRVSR-RKAASMSITSVLYLKDE---VSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265 (512)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~---~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 265 (512)
........ .... ......+|..+.|||-+ ..+++.. .|+.|++||+........ ......
T Consensus 106 ~~~~q~~ty-------------~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~-~L~k~~ 170 (452)
T 3pbp_A 106 QDAFQIFHY-------------SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPI-VLNKPN 170 (452)
T ss_dssp HHTTEEEEE-------------EGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCE-EESCCC
T ss_pred ccccceeEE-------------EcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCc-chhccc
Confidence 00000000 0000 01135789999999954 4566544 699999999986322111 000100
Q ss_pred ccccccccccCeeEEEeCCCCCEEEEEe--cCCeEEEEE
Q 010390 266 SSSAKETRLHGISSLSQDSNGVFLTASC--MDHRIYLYN 302 (512)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d 302 (512)
...........|.+++|..++-.|++.+ .+|.|+-.-
T Consensus 171 ~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 171 NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 0001122336788999999888777755 778877654
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.75 E-value=0.31 Score=44.28 Aligned_cols=192 Identities=10% Similarity=0.167 Sum_probs=104.5
Q ss_pred cEEEEEEecCCCEEEEE------------eCCCcEEEEeCCCC--eee-ecccC-----cCCCEEEEEeeCC--CCCeEE
Q 010390 110 AIFDLCWIKEDTNILTA------------SGDQTIKIWDAEKK--KCT-GALMG-----HTGSIKSLCSHPT--NSDILV 167 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~------------~~dg~i~iwd~~~~--~~~-~~~~~-----h~~~v~~l~~~~~--~~~~l~ 167 (512)
..-++...|+|..++++ ..+|.|.++|..+. +.. -.+.+ .......+.+.++ +...|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34455667776554444 26899999998742 211 11222 2346778887663 322343
Q ss_pred EE-eC--CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc-cccccEEEEEEeecCCEEEEEee---
Q 010390 168 SG-SR--DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK-AASMSITSVLYLKDEVSIATASA--- 240 (512)
Q Consensus 168 s~-~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~g~--- 240 (512)
.+ .. +.+|.+|++......... ..... ..-...+.+.+.++|..+++...
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~-----------------------~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ft 187 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLH-----------------------LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFI 187 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEE-----------------------EEEECCTTCSSEEEEEEEETTEEEEEESCSCS
T ss_pred EEECCCCCCeEEEEEEECCCCEEEE-----------------------EeccccCCCCCCceEEEeCCCCEEecCCcEeC
Confidence 33 33 457788877643221100 00000 11235788999999886664220
Q ss_pred -------------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccC
Q 010390 241 -------------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQL 306 (512)
Q Consensus 241 -------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 306 (512)
..|.|..+|.. +.. .........+.++|+||++.|+++. ..+.|..|++...
T Consensus 188 d~~~~~~e~~~~~~~g~vyr~d~~--~~~------------~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 188 DPYLKSWEMHLGLAWSFVTYYSPN--DVR------------VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 253 (355)
T ss_dssp SHHHHHHHHHTTCCCEEEEEECTT--CCE------------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CcccccchhhccCCccEEEEEECC--eEE------------EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence 12445555542 111 1222234578899999998887765 5689999998632
Q ss_pred C-CCceEeeeeceeceeEEEEEECC-CCCEEEEecCC
Q 010390 307 D-KGPIQHFSGCRIESFYVKSEICP-NASHILSGSSD 341 (512)
Q Consensus 307 ~-~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~d 341 (512)
. ......+ ......-.+++++ +|++.+++..+
T Consensus 254 g~l~~~~~~---~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 254 WTLTPLRVL---SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SCEEEEEEE---ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred CcEecCEEE---eCCCCCceEEEeCCCCcEEEEecCC
Confidence 1 1111122 1123455688888 58877766533
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.67 E-value=0.22 Score=44.54 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=55.0
Q ss_pred CCCEEEEEecC-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-----CCEEEEecCCCCC
Q 010390 285 NGVFLTASCMD-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-----GNAYVWQVNKPQA 354 (512)
Q Consensus 285 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iw~~~~~~~ 354 (512)
++.+++.|+.+ ..+.+||+.+..-..+..+...... ...+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG--AGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc--ceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 56677777654 4688898755332222111111111 111222 66777777764 4589999876532
Q ss_pred C-CceeccccCCeEEEEeCCCCCCeEEEEeCC-----CcEEEEeCCCCcccc
Q 010390 355 D-PIKLKSHDGEVTAVNWCPNEAGKIVTSSDD-----YTVRLWSLENSRCSS 400 (512)
Q Consensus 355 ~-~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~ 400 (512)
. +..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+...
T Consensus 244 ~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 244 TFVAPMKHRRSALGITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EECCCCCCCccceEEEEE--CC-EEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 1 0011111111222222 44 677777754 357788887765433
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.29 E-value=0.16 Score=42.07 Aligned_cols=153 Identities=10% Similarity=-0.051 Sum_probs=80.2
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 301 (512)
.+..++|+|++...++ .+|.+.-.+..+.....-...... .-..--....++.|+++|.+.++ .||.|+-+
T Consensus 42 ~~~~laf~P~G~LYaV---~~G~Ly~~~~~t~~~~~W~~s~t~----IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV---LNDKIYKGTPPTHDNDNWMGRAKK----IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKA 112 (236)
T ss_dssp TCSEEEECTTSCEEEE---ETTEEEEESCCCSTTCCHHHHCEE----EECSCGGGCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred cceeEEECCCccEEEE---eCCeEEEECCCCCCcccccccccE----ecccccccceEEEECCCCCEEEe--CCCEEEEe
Confidence 6779999998886665 478877776644222111000000 00001112478999999988777 66998877
Q ss_pred EcccCCCCce-E--eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC-----Cceec-cccCCeEEEEeC
Q 010390 302 NVLQLDKGPI-Q--HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD-----PIKLK-SHDGEVTAVNWC 372 (512)
Q Consensus 302 d~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~-----~~~~~-~h~~~v~~v~~~ 372 (512)
+-.+...... . ..-+...-..+..+.+.|+|.+.++. |+.++-......... ...+. ..-..-+-+.|.
T Consensus 113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 7422111111 0 11111111245779999999988877 676543322211110 01111 222344556688
Q ss_pred CCCCCeEEEEeCCCcE
Q 010390 373 PNEAGKIVTSSDDYTV 388 (512)
Q Consensus 373 ~~~~~~l~s~~~dg~i 388 (512)
+++ .+.+.. +|.+
T Consensus 191 ~~G-~l~~v~--~g~~ 203 (236)
T 1tl2_A 191 SVG-TLFGVQ--GGKF 203 (236)
T ss_dssp TTS-CEEEEE--TTEE
T ss_pred CCC-cEEEEe--CCeE
Confidence 887 444444 6633
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.11 E-value=0.66 Score=44.03 Aligned_cols=114 Identities=9% Similarity=0.022 Sum_probs=61.7
Q ss_pred cccEEEEEEeecCCEEEEEeecC-CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC---CCEEEEEec-
Q 010390 220 SMSITSVLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN---GVFLTASCM- 294 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~- 294 (512)
-.....|+|.|++..+++ - .. +.|++++..++........+... ...........|+++|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~-e-~~gg~I~~~~~~~g~~~~~~~~~~~~---~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~ 100 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLT-E-RATGKILRVNPESGSVKTVFQVPEIV---NDADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (454)
T ss_dssp CSSEEEEEECTTSCEEEE-E-TTTCEEEEECTTTCCEEEEEECTTCC---CCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEE-E-cCCCEEEEEECCCCcEeEEecCCccc---cccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence 346789999999986665 3 45 47888876544332111111000 00113456789999995 555554442
Q ss_pred ------------CCeEEEEEcccCCCC-----ceEe-eeeceeceeEEEEEECCCCCEEEEec
Q 010390 295 ------------DHRIYLYNVLQLDKG-----PIQH-FSGCRIESFYVKSEICPNASHILSGS 339 (512)
Q Consensus 295 ------------dg~i~i~d~~~~~~~-----~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~ 339 (512)
...|..|++...... .+.. +.. ........++|.|||.+.++.+
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEEC
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEEC
Confidence 235666665332111 1111 111 1123456799999998777644
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.09 E-value=0.39 Score=51.48 Aligned_cols=228 Identities=14% Similarity=0.128 Sum_probs=128.7
Q ss_pred CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
....|.|.|+.++..+..-. -.--+.-.+|.. +.++.- ...++.++|+++...+.....
T Consensus 46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~-~iiALr-ag~~lQiFnl~~k~klks~~~---------------- 104 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPAS-KVIALK-AGKTLQIFNIEMKSKMKAHTM---------------- 104 (1630)
T ss_pred CCceEEEEECCCCCCccccc---ccchhhccCCCc-ceEEEe-cCCeEEEeehHHhhhhccccc----------------
Confidence 34479999998865442111 111233467765 555544 367999999988766554322
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
...|.--.|..+...-++ + +..|+-|++.....+......+. .+ ....|..-..+++.+
T Consensus 105 ------------~e~VvfWkWis~~~l~lV-T--~~aVyHW~~~~~s~P~k~fdR~~----~L--~~~QIinY~~d~~~k 163 (1630)
T 1xi4_A 105 ------------TDDVTFWKWISLNTVALV-T--DNAVYHWSMEGESQPVKMFDRHS----SL--AGCQIINYRTDAKQK 163 (1630)
T ss_pred ------------CCCceEEEecCCCeeEEE-c--CCeEEEeccCCCCccHHHHhcch----hc--ccCeeEEeeeCCCCC
Confidence 234555566555544444 2 67899999976443333222221 11 135688888899999
Q ss_pred EEEEEe-------cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-CCEEEEecC---CCCEEEEecCCC---C
Q 010390 288 FLTASC-------MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-ASHILSGSS---DGNAYVWQVNKP---Q 353 (512)
Q Consensus 288 ~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~---dg~i~iw~~~~~---~ 353 (512)
+++..+ ..|.+.+|....... ..+.||...-.-..+.=.+. ...++.+.. .+.++|-++... .
T Consensus 164 W~~l~gi~~~~~~v~G~mQLyS~er~~s---Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~ 240 (1630)
T 1xi4_A 164 WLLLTGISAQQNRVVGAMQLYSVDRKVS---QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN 240 (1630)
T ss_pred eEEEEeeccCCCcccceeeeeecccccc---hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC
Confidence 877554 347889998754332 22333321100000000011 122222211 367889888543 1
Q ss_pred CC-----Cceecc---ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 354 AD-----PIKLKS---HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 354 ~~-----~~~~~~---h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.. ...+.. -.+-..++..++.. ..+...+.-|.|+++|+.++.++..
T Consensus 241 ~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 241 QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred CCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhhh
Confidence 10 001111 13345567777776 6888888999999999999998876
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.08 E-value=0.49 Score=42.36 Aligned_cols=109 Identities=7% Similarity=0.118 Sum_probs=54.4
Q ss_pred CCCEEEEEec-C-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC-----CEEEEecCCCC
Q 010390 285 NGVFLTASCM-D-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG-----NAYVWQVNKPQ 353 (512)
Q Consensus 285 ~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iw~~~~~~ 353 (512)
++++++.|+. + ..+.+||..+..-..+..+...... ...+. -++++++.|+.++ .+.+||..+.+
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL--FGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc--eEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 5667777765 2 4688999765332222111111111 11122 2667777777654 47888887653
Q ss_pred CCC-ceeccccCCeEEEEeCCCCCCeEEEEeCCC--------------cEEEEeCCCCcccc
Q 010390 354 ADP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDDY--------------TVRLWSLENSRCSS 400 (512)
Q Consensus 354 ~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg--------------~i~vwd~~~~~~~~ 400 (512)
-.. ..+.........+.+ ++ .+++.|+.++ .+.+||+.+.+-..
T Consensus 224 W~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 282 (315)
T 4asc_A 224 WAPFEAFPQERSSLSLVSL--VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG 282 (315)
T ss_dssp EEEECCCSSCCBSCEEEEE--TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred EEECCCCCCcccceeEEEE--CC-EEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence 210 001111111222333 44 6777777542 46788888776444
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.02 E-value=0.84 Score=41.31 Aligned_cols=254 Identities=13% Similarity=0.110 Sum_probs=124.5
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee--eecc----cCcCCCEEEEEeeCC---CCCeEEEEe--CCCc
Q 010390 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC--TGAL----MGHTGSIKSLCSHPT---NSDILVSGS--RDGS 174 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~~h~~~v~~l~~~~~---~~~~l~s~~--~dg~ 174 (512)
..-..-+.|+|.|+|..+++--..|.|++++..+++. +..+ .........|+++|+ +..+.++-+ .+..
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 3345778999999999777765589999998765543 2211 223457899999995 323444322 3445
Q ss_pred EEEEeCCCCCCC-CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec------------
Q 010390 175 FAIWDLRCKSSP-KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV------------ 241 (512)
Q Consensus 175 i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~------------ 241 (512)
|.-|.+...... ........+.. .... ........|.|.|++..+++.|..
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~--------------~~p~--~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~ 172 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFR--------------GIPK--GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSL 172 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEE--------------EECC--CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCS
T ss_pred EEEEEeCCCCcccccCCCcEEEEE--------------cCCC--CCCccCccccCCCCCCEEEEECCCCCCccccCCCCC
Confidence 555555442210 00000000000 0000 111234679999999877776631
Q ss_pred CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCC-------------
Q 010390 242 NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLD------------- 307 (512)
Q Consensus 242 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------- 307 (512)
.|.|.-.+.... ...-. +.... ............++|+|+|.+.++-. .++.=.|.-+..+.
T Consensus 173 ~G~IlRi~~dG~-ip~~n--Pf~~~-~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~ 248 (347)
T 3das_A 173 GGKILRMTPDGE-PAPGN--PFPGS-PVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGG 248 (347)
T ss_dssp TTCEEEECTTSS-BCTTC--SSTTC-CEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCC
T ss_pred CCEEEEEeCCCC-ccCCC--CCCCC-eEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCC
Confidence 234444443321 00000 00000 01111123366899999877555432 22211222111110
Q ss_pred ---CCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC---CCceeccccCCeEEEEeCCCCCCeEEE
Q 010390 308 ---KGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA---DPIKLKSHDGEVTAVNWCPNEAGKIVT 381 (512)
Q Consensus 308 ---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~l~s 381 (512)
..++..+..+ ......++|. ++..++..-..+.|....+..... ....+.+..+.+.+|+..||| .++++
T Consensus 249 ~~~~~P~~~~~~~--~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG-~lyv~ 324 (347)
T 3das_A 249 SGFHDPVAQWSTD--EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD-KLWLV 324 (347)
T ss_dssp TTCCCCSEEECTT--TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT-EEEEE
T ss_pred ccccCCcEecCCC--CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC-cEEEE
Confidence 0111111111 0123345554 466666666666777777765431 112334445689999999999 55555
Q ss_pred Ee
Q 010390 382 SS 383 (512)
Q Consensus 382 ~~ 383 (512)
.+
T Consensus 325 td 326 (347)
T 3das_A 325 TS 326 (347)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.96 E-value=0.81 Score=40.61 Aligned_cols=213 Identities=8% Similarity=-0.026 Sum_probs=107.3
Q ss_pred EEEecCCCEEEEEeCC--------------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe--CCC--cE
Q 010390 114 LCWIKEDTNILTASGD--------------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS--RDG--SF 175 (512)
Q Consensus 114 l~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg--~i 175 (512)
-.+++++.+|+-+... ..|+..++...+... +.. ... ..|++++ ..|+-.. .++ .|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~~--~~~s~~g-~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DPC--IYASLIG-NYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SCE--EEEEEET-TEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CCc--cEEEEeC-CEEEEEeecCCCCceE
Confidence 4557899999865442 367777777664332 221 122 2566777 4555443 334 44
Q ss_pred EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390 176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA 255 (512)
Q Consensus 176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~ 255 (512)
...++...... .+..+. + ..++++++.|+.+......|...++.....
T Consensus 132 y~~~~dGs~~~----------------------------~lt~~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~ 179 (302)
T 3s25_A 132 YRIRIDGEEKK----------------------------KIKNHY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSE 179 (302)
T ss_dssp EEEETTSCCCE----------------------------EEESSC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred EEEECCCCCeE----------------------------EEeCCC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence 44455432211 111111 1 345778888887654456788877766543
Q ss_pred eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC--CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390 256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD--HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 333 (512)
.... . ... ...+.|++.+|+-...+ ..|..-++.... ...+.... + ..++|+++
T Consensus 180 ~~l~-----------~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~~~----~--~~~~~~g~ 235 (302)
T 3s25_A 180 ALFY-----------D---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN---PVVLTEAN----I--EHYNVYGS 235 (302)
T ss_dssp EEEE-----------C---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC---CEECSCSC----E--EEEEEETT
T ss_pred EEEe-----------C---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC---eEEEeCCC----c--ceEEECCC
Confidence 3211 1 111 12355888887766543 356666654432 22222211 1 34778888
Q ss_pred EEEEec--CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 334 HILSGS--SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 334 ~l~~g~--~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
+|.-+. ..+.|..-+++.... ..+.. +.+..+.. .+..+..+--..+.|..-++.
T Consensus 236 ~Iy~~~~~~~~~i~~~~~DG~~r--~~l~~--~~~~~i~i--~~d~Iy~td~~~~~i~~~~~d 292 (302)
T 3s25_A 236 LIFYQRGGDNPALCVVKNDGTGF--KELAK--GEFCNINV--TSQYVYFTDFVSNKEYCTSTQ 292 (302)
T ss_dssp EEEEEECSSSCEEEEEETTSCCC--EEEEE--SCEEEEEE--CSSEEEEEETTTCCEEEEESS
T ss_pred EEEEEECCCCcEEEEEECCCCcc--EEeeC--CccceEEE--eCCEEEEEECCCCeEEEEECC
Confidence 887553 235566666655433 22221 12444444 341344444344555544443
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.85 E-value=0.94 Score=40.47 Aligned_cols=100 Identities=18% Similarity=0.141 Sum_probs=48.6
Q ss_pred EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----C-------CcEEEE
Q 010390 67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----D-------QTIKIW 135 (512)
Q Consensus 67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----d-------g~i~iw 135 (512)
+++.|+ ..+.+||..+..-.. ..+..............++..++.|+. + ..+.+|
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~------------~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 72 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC------------ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQF 72 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE------------EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEE
T ss_pred EEEEcC--CceEEECCCCCeEec------------CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEe
Confidence 455565 478999987654210 111111111111222347777777873 1 127788
Q ss_pred eCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCC--------CcEEEEeCCCC
Q 010390 136 DAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRD--------GSFAIWDLRCK 183 (512)
Q Consensus 136 d~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vwd~~~~ 183 (512)
|..+.+-.. .+......- +++.. ++ .+++.|+.+ ..+.+||..+.
T Consensus 73 d~~~~~W~~~~~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~ 127 (315)
T 4asc_A 73 DHLDSEWLGMPPLPSPRCLF-GLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSF 127 (315)
T ss_dssp ETTTTEEEECCCBSSCEESC-EEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTT
T ss_pred cCCCCeEEECCCCCcchhce-eEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCC
Confidence 988765322 221111111 12222 23 667777632 35777887654
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.71 E-value=2.2 Score=43.65 Aligned_cols=247 Identities=8% Similarity=-0.046 Sum_probs=127.1
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS 188 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 188 (512)
..|.++....++..|..|+.. -+..+|..+++...........|.++....++ . |..|+.+ -|.+++..+......
T Consensus 191 ~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigT~~-Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG-D-LLAGTDN-GLYVYHNDTTPLQHI 266 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-EEEEEETTTTEEEEEEEEEEEEEEEEEECTTC-C-EEEEETT-EEEEECCTTSCCEEE
T ss_pred ceeEEEEEECCCCEEEEEECC-CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC-C-EEEEeCC-ceeEEecCCCcEEEE
Confidence 358888887777766656544 48889987765432111123457888776655 4 4444544 577888765432110
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccc
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS 268 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 268 (512)
... . ..........|.++....++...+. +..| +.++.....-...... ..
T Consensus 267 ~~~------------------~--~~~~~l~~~~i~~i~~D~~g~lWiG--T~~G-l~~~~~~~~~~~~~~~-~~----- 317 (758)
T 3ott_A 267 IHD------------------S--RNIQSLTNNIIWNIFADQEHNIWLG--TDYG-ISLSRYNSALQFIPIS-QI----- 317 (758)
T ss_dssp CCC------------------T--TCTTSCSCSCEEEEEECTTCCEEEE--ESSS-EEEECCCC-CEEEEHH-HH-----
T ss_pred EcC------------------C--CCcCcCCcCeEEEEEEcCCCCEEEE--eCCc-ccccccCCceeEEecc-cC-----
Confidence 000 0 0000112346888887777776653 3456 5444322110000000 00
Q ss_pred cccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-----ceeceeEEEEEECCCCCEEEEecCCCC
Q 010390 269 AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-----CRIESFYVKSEICPNASHILSGSSDGN 343 (512)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~g~~dg~ 343 (512)
........|.++..+.+|.+.+ |+.+ -+..++...........+.. ......+.++.-..+|++.+ |+.+ -
T Consensus 318 ~~~~~~~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~~-G 393 (758)
T 3ott_A 318 TGTGDGNQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATDG-S 393 (758)
T ss_dssp SCSCCCCBEEEEEECTTCCEEE-EETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EETT-E
T ss_pred CCCCCCceEEEEEEcCCCCEEE-eeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeCC-c
Confidence 0011123588888888887554 4444 46666644321112212210 01123467777777776554 4444 5
Q ss_pred EEEEecCCCCCCCceecc-----ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 344 AYVWQVNKPQADPIKLKS-----HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 344 i~iw~~~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
+..|+..+.+........ ....|.++.-..++ .|..|+..+-|.++|..
T Consensus 394 L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 394 INRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDKH 447 (758)
T ss_dssp EEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEHH
T ss_pred HhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECCCceEEEccc
Confidence 888988765432111111 23468888877766 45556665557777754
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.66 E-value=1 Score=40.25 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=32.5
Q ss_pred cCCCEEEEEeC----CC-------cEEEEeCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCC-------CcEEE
Q 010390 118 KEDTNILTASG----DQ-------TIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRD-------GSFAI 177 (512)
Q Consensus 118 ~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d-------g~i~v 177 (512)
.++..++.|+. ++ .+.++|..+.+-.. .+......- +++.. ++ .+++.|+.+ ..+.+
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DD-KIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE-TT-EEEEEEEEBTTTCCEEEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE-CC-EEEEEcCccCCCCcccceEEE
Confidence 46777777773 12 17788887765322 222111111 22222 33 677777754 24677
Q ss_pred EeCCCC
Q 010390 178 WDLRCK 183 (512)
Q Consensus 178 wd~~~~ 183 (512)
||..+.
T Consensus 132 yd~~~~ 137 (318)
T 2woz_A 132 YDPVAA 137 (318)
T ss_dssp EETTTT
T ss_pred EeCCCC
Confidence 777644
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.44 E-value=1.4 Score=39.77 Aligned_cols=109 Identities=8% Similarity=0.124 Sum_probs=62.4
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccce-eccccCCCcEEEEEEecC---CCEEEEE
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARI-SDWVAHQNAIFDLCWIKE---DTNILTA 126 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~s~~---~~~l~s~ 126 (512)
....+|+| .|||+++++--..|.|++++..++.... ...+ ..+.........|+++|+ +..|...
T Consensus 32 ~~P~~ia~---~pdG~llVter~~G~I~~v~~~~g~~~~--------v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 32 NSPWGLAP---LPGGDLLVSSRDEATITRVDAKTGRKTE--------LGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp SSEEEEEE---CTTSCEEEEETTTCEEEEECTTTCCEEE--------EEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEE---cCCCcEEEEEecCCEEEEEECCCCcEee--------ecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 34678888 9999977776558999999865442200 0000 112234578899999995 3444432
Q ss_pred ---eCCCcEEEEeCCCC----------eee-eccc-CcCCCEEEEEeeCCCCCeEEEEeC
Q 010390 127 ---SGDQTIKIWDAEKK----------KCT-GALM-GHTGSIKSLCSHPTNSDILVSGSR 171 (512)
Q Consensus 127 ---~~dg~i~iwd~~~~----------~~~-~~~~-~h~~~v~~l~~~~~~~~~l~s~~~ 171 (512)
..++.|.-|.+..+ +.+ ..+. ........|.|.|++ .++++.+.
T Consensus 101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd 159 (347)
T 3das_A 101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGE 159 (347)
T ss_dssp EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBC
T ss_pred EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECC
Confidence 23455666655441 111 1121 111234568999988 66666553
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.35 E-value=1.5 Score=39.25 Aligned_cols=110 Identities=8% Similarity=0.144 Sum_probs=53.1
Q ss_pred CCCCEEEEEec------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-----CCEEEEecCCC
Q 010390 284 SNGVFLTASCM------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-----GNAYVWQVNKP 352 (512)
Q Consensus 284 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iw~~~~~ 352 (512)
.++.+++.|+. -..+.+||..+..-..+......... ...+. -++++++.|+.+ ..+.+||..+.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM--FGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS--CEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc--ceEEE--ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 35666677664 24688999865332222111111111 11122 256777777653 24778888765
Q ss_pred CCC-CceeccccCCeEEEEeCCCCCCeEEEEeCC--------------CcEEEEeCCCCcccc
Q 010390 353 QAD-PIKLKSHDGEVTAVNWCPNEAGKIVTSSDD--------------YTVRLWSLENSRCSS 400 (512)
Q Consensus 353 ~~~-~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d--------------g~i~vwd~~~~~~~~ 400 (512)
+-. +..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-..
T Consensus 233 ~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 233 KWEVMTEFPQERSSISLVSL--AG-SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp CEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred eEEECCCCCCcccceEEEEE--CC-EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 321 0111111111122222 34 677777654 356777877765443
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.29 E-value=1.3 Score=39.38 Aligned_cols=140 Identities=6% Similarity=0.062 Sum_probs=75.4
Q ss_pred EEeecCCEEEEEe---ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec-CCeEEEEE
Q 010390 227 LYLKDEVSIATAS---AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-DHRIYLYN 302 (512)
Q Consensus 227 ~~~~~~~~l~~~g---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d 302 (512)
.+++++..++.+. ..+..|...++....... +..+ .+ ..++++++.|+-.+. ...|.+.+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~------------lt~~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~ 173 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK------------IKNH--YL--FTCNTSDRYFYYNNPKNGQLYRYD 173 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE------------EESS--CC--CCSEEETTEEEEECTTTCCEEEEE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE------------EeCC--Cc--eEeeEECCEEEEEeCCCceEEEEE
Confidence 6778888888765 234456666665433221 1111 11 345677887776554 56788888
Q ss_pred cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC--CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEE
Q 010390 303 VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD--GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIV 380 (512)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~ 380 (512)
+.......+ +.+. . . ..+.|++.+|+-...+ ..|..-++..... ..+.. ..+. .|+|++ .+|.
T Consensus 174 l~g~~~~~l--~~~~---~--~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt~--~~~~--~~~~~g-~~Iy 238 (302)
T 3s25_A 174 TASQSEALF--YDCN---C--Y-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLTE--ANIE--HYNVYG-SLIF 238 (302)
T ss_dssp TTTTEEEEE--ECSC---E--E-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECSC--SCEE--EEEEET-TEEE
T ss_pred CCCCCEEEE--eCCC---c--c-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEeC--CCcc--eEEECC-CEEE
Confidence 754332211 2211 1 1 2345888888765433 3466666655443 23332 2332 367777 5665
Q ss_pred EEe--CCCcEEEEeCCCCc
Q 010390 381 TSS--DDYTVRLWSLENSR 397 (512)
Q Consensus 381 s~~--~dg~i~vwd~~~~~ 397 (512)
-++ ..+.|..-+++...
T Consensus 239 ~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 239 YQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEECSSSCEEEEEETTSCC
T ss_pred EEECCCCcEEEEEECCCCc
Confidence 442 34567777776544
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.24 E-value=0.97 Score=41.21 Aligned_cols=54 Identities=11% Similarity=-0.000 Sum_probs=26.1
Q ss_pred eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC------CEEEEecCCCCC
Q 010390 297 RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG------NAYVWQVNKPQA 354 (512)
Q Consensus 297 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg------~i~iw~~~~~~~ 354 (512)
.+.+||+.+..-..+..+....... .+...++++++.|+.++ .|.++++++.+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~----~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYG----VSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSS----EEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred eEEEEecCCCceeeCCCCCCCcccc----eeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 5778888664443333222221111 12224677778887543 355667776654
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.75 E-value=4.3 Score=41.50 Aligned_cols=243 Identities=10% Similarity=0.015 Sum_probs=129.1
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec-ccC----cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA-LMG----HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
..|.++....++...+ |+.+| |..++..+++.... ... ....|.++....++ ..|..|.. +-|..+|..+.
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTT
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCC
Confidence 5688888776776544 55555 77888777654321 111 12348888877665 44444554 45778887643
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
..... .......|.++....++...+. + ++-+.+++..+...........
T Consensus 222 ~~~~~---------------------------~~l~~~~i~~i~~d~~g~lWig--T-~~Gl~~~~~~~~~~~~~~~~~~ 271 (758)
T 3ott_A 222 QIKQT---------------------------EAFHNNSIKSLALDGNGDLLAG--T-DNGLYVYHNDTTPLQHIIHDSR 271 (758)
T ss_dssp EEEEE---------------------------EEEEEEEEEEEEECTTCCEEEE--E-TTEEEEECCTTSCCEEECCCTT
T ss_pred eEEec---------------------------cCCCCCeEEEEEEcCCCCEEEE--e-CCceeEEecCCCcEEEEEcCCC
Confidence 21000 0011235778877777776654 3 3458888877654322111000
Q ss_pred ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-----ceeceeEEEEEECCCCCEEEEe
Q 010390 264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-----CRIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~g 338 (512)
. ........|.++..+.+|.+ ..|+..| +.++... .....+.. ......+.++....+|.+.+.
T Consensus 272 ~----~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG- 340 (758)
T 3ott_A 272 N----IQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYN----SALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG- 340 (758)
T ss_dssp C----TTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCC----C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-
T ss_pred C----cCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccC----CceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-
Confidence 0 01122345889988888764 4454556 5444321 11111110 111234667777777775554
Q ss_pred cCCCCEEEEecCCCCCC-Cceec-------cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 339 SSDGNAYVWQVNKPQAD-PIKLK-------SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~-~~~~~-------~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
+.+| +..++..++... ...+. -....|.++.-..++ .+. .|+. +-|..+|..+++...
T Consensus 341 t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lW-igt~-~GL~~~~~~~~~~~~ 406 (758)
T 3ott_A 341 GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLW-IATD-GSINRYDYATRQFIH 406 (758)
T ss_dssp ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEE-EEET-TEEEEEETTTTEEEE
T ss_pred eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEE-EEeC-CcHhhcCcCCCcEEE
Confidence 4455 666665543211 11111 012458888887777 444 4444 468899988776543
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.70 E-value=0.97 Score=37.55 Aligned_cols=101 Identities=10% Similarity=0.079 Sum_probs=60.4
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCc--------EEEEEEecCCCEE
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA--------IFDLCWIKEDTNI 123 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------V~~l~~s~~~~~l 123 (512)
.+..++| +|||.+.|+ .+|.+.-.+..+... ..+.+-... -.++.|.|+|.+.
T Consensus 42 ~~~~laf---~P~G~LYaV--~~G~Ly~~~~~t~~~--------------~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LY 102 (236)
T 1tl2_A 42 NFKFLFL---SPGGELYGV--LNDKIYKGTPPTHDN--------------DNWMGRAKKIGNGGWNQFQFLFFDPNGYLY 102 (236)
T ss_dssp TCSEEEE---CTTSCEEEE--ETTEEEEESCCCSTT--------------CCHHHHCEEEECSCGGGCSEEEECTTSCEE
T ss_pred cceeEEE---CCCccEEEE--eCCeEEEECCCCCCc--------------ccccccccEecccccccceEEEECCCCCEE
Confidence 5567777 999997777 577655555433211 011111122 3678999999877
Q ss_pred EEEeCCCcEEEEeCCCCeeee------cc-cCcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390 124 LTASGDQTIKIWDAEKKKCTG------AL-MGHTGSIKSLCSHPTNSDILVSGSRDGSFA 176 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~------~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 176 (512)
++ .||.|+-++..+..... .+ ..--..+..|.|.|++ .+.+.. |+.+.
T Consensus 103 av--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~ly 157 (236)
T 1tl2_A 103 AV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFY 157 (236)
T ss_dssp EE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred Ee--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEE
Confidence 77 56999888764321111 11 1112468999999988 555554 77754
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.26 E-value=3.8 Score=38.81 Aligned_cols=105 Identities=12% Similarity=0.154 Sum_probs=59.6
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc------cCCCcEEEEEEecC---CCE
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV------AHQNAIFDLCWIKE---DTN 122 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~s~~---~~~ 122 (512)
...+|+| .|+|+++++-...+.|++++..++.. ..+..+. ...+....|+|+|+ +..
T Consensus 28 ~P~~~a~---~pdG~l~V~e~~gg~I~~~~~~~g~~-----------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~ 93 (454)
T 1cru_A 28 KPHALLW---GPDNQIWLTERATGKILRVNPESGSV-----------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93 (454)
T ss_dssp SEEEEEE---CTTSCEEEEETTTCEEEEECTTTCCE-----------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred CceEEEE---cCCCcEEEEEcCCCEEEEEECCCCcE-----------eEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence 4568888 99999777654445788887644321 1111111 13567899999995 555
Q ss_pred EEEEeC-------------CCcEEEEeCCCC-------eeee-ccc-CcCCCEEEEEeeCCCCCeEEEEeC
Q 010390 123 ILTASG-------------DQTIKIWDAEKK-------KCTG-ALM-GHTGSIKSLCSHPTNSDILVSGSR 171 (512)
Q Consensus 123 l~s~~~-------------dg~i~iwd~~~~-------~~~~-~~~-~h~~~v~~l~~~~~~~~~l~s~~~ 171 (512)
|..+.. ...|.-+++..+ +.+. .+. ........|+|.|++ .++++.+.
T Consensus 94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd 163 (454)
T 1cru_A 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD 163 (454)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence 554332 134555554321 1111 121 112347889999998 66666554
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.67 E-value=4.2 Score=41.04 Aligned_cols=107 Identities=11% Similarity=0.198 Sum_probs=56.9
Q ss_pred CCCcEEEEeeCC----CcEEEEECCCCCCcccccccccccccee-c-----cccCCCcEEEEEEec-CCCEEEEEeCC--
Q 010390 63 KNSHIFAVSDED----GYVSLFDSRRKLPSFACHRENAEKARIS-D-----WVAHQNAIFDLCWIK-EDTNILTASGD-- 129 (512)
Q Consensus 63 ~~~~~latg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~-----~~~h~~~V~~l~~s~-~~~~l~s~~~d-- 129 (512)
.++.+++.|+.+ ..+.+||..+..-.. +. . ....... .+++..+ ++..++.|+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~-----------~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~ 463 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDM-----------KNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAP 463 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEE-----------EECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSST
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEE-----------eccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCC
Confidence 467788888754 358888876653211 11 0 0100111 2233333 67777777754
Q ss_pred ----CcEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCC
Q 010390 130 ----QTIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCK 183 (512)
Q Consensus 130 ----g~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~ 183 (512)
..+.+||..+.+-. ..+......- +++...++ .+++.|+.++ .+.+||..+.
T Consensus 464 ~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 464 HQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDG-NVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp TCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTS-CEEEECCBCSSCSEEEEETTTT
T ss_pred CCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCC-EEEEECCCCCCCCEEEEECCCC
Confidence 35788998875432 2222111111 22222244 7888887655 6888888754
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.33 E-value=6.3 Score=35.69 Aligned_cols=23 Identities=4% Similarity=0.260 Sum_probs=16.3
Q ss_pred CCcEEEEeeC-C---------CcEEEEECCCCC
Q 010390 64 NSHIFAVSDE-D---------GYVSLFDSRRKL 86 (512)
Q Consensus 64 ~~~~latg~~-d---------g~i~iwd~~~~~ 86 (512)
++++++.|+. + ..+.+||..+..
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 6778888776 2 468889887653
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.43 E-value=8.5 Score=38.77 Aligned_cols=116 Identities=5% Similarity=-0.029 Sum_probs=57.0
Q ss_pred cCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEec--C-----CeEEE
Q 010390 231 DEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCM--D-----HRIYL 300 (512)
Q Consensus 231 ~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~--d-----g~i~i 300 (512)
++..++. |+.++ .+.+||..+..-..... .. ..........++.+..+ +.+++.|+. + +.+.+
T Consensus 500 ~~~iyv~-GG~~~~~~v~~yd~~t~~W~~~~~--~g----~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~ 572 (695)
T 2zwa_A 500 DGNVLIL-GGVTEGPAMLLYNVTEEIFKDVTP--KD----EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAII 572 (695)
T ss_dssp TSCEEEE-CCBCSSCSEEEEETTTTEEEECCC--SS----GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEE
T ss_pred CCEEEEE-CCCCCCCCEEEEECCCCceEEccC--CC----CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEE
Confidence 5555555 44443 68999988765332211 00 01111122233555554 667777765 2 46889
Q ss_pred EEcccCCCCc---eEeeeece-eceeEEEEEECCCCCEEEEecC--------CCCEEEEecCCCC
Q 010390 301 YNVLQLDKGP---IQHFSGCR-IESFYVKSEICPNASHILSGSS--------DGNAYVWQVNKPQ 353 (512)
Q Consensus 301 ~d~~~~~~~~---~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~--------dg~i~iw~~~~~~ 353 (512)
||+.+..... ...+.... ....-..++...++++++.|+. ...|.+||..+..
T Consensus 573 yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 9987654100 11111110 1111111222233677777774 2458889887653
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=88.85 E-value=13 Score=33.41 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=40.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCc-CCCEEEEEe--eCCCCCeEEEE-eCCCcEEEEeCCCC
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGH-TGSIKSLCS--HPTNSDILVSG-SRDGSFAIWDLRCK 183 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~--~~~~~~~l~s~-~~dg~i~vwd~~~~ 183 (512)
..++.++.||.|.-.|..+|+....+... ..++....- .+.++..++.. ..||.|..++..++
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G 77 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG 77 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC
Confidence 46788999999999999999988887643 122222110 01121333333 57999999998765
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.38 E-value=0.96 Score=43.27 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=57.2
Q ss_pred ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC-CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390 221 MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW-PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299 (512)
Q Consensus 221 ~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 299 (512)
.....+..+|||++++++|-.+.++.++|++.......... ..............+....+|+++|....+...|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 34556888999999999999999999999986443221110 00000001112234577899999996666666899999
Q ss_pred EEEccc
Q 010390 300 LYNVLQ 305 (512)
Q Consensus 300 i~d~~~ 305 (512)
-|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999854
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.55 E-value=12 Score=35.46 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=60.7
Q ss_pred ccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceec-ccCCCccccccccccccCeeEEEeCCC----CCEEEEEec
Q 010390 221 MSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQIT-QAWPHAESSSAKETRLHGISSLSQDSN----GVFLTASCM 294 (512)
Q Consensus 221 ~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~ 294 (512)
...+.|+|.|++. .++++ ...|.|++++......... ...+.................|+++|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3678999999996 44443 3789999997543211000 000000000000112456889999996 433333222
Q ss_pred --C----------CeEEEEEcccCC--------CCceEeeeeceeceeEEEEEECCCCCEEEEecC
Q 010390 295 --D----------HRIYLYNVLQLD--------KGPIQHFSGCRIESFYVKSEICPNASHILSGSS 340 (512)
Q Consensus 295 --d----------g~i~i~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 340 (512)
+ ..|.-|.+.... ...+..+...........++|.|||.+.++.++
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 145556654311 112222221122334567999999987776554
No 348
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=86.82 E-value=18 Score=32.96 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=85.3
Q ss_pred ccEEEEEEe---ec----CCEEEEEeecCCeEEEEeccCccceeccc---CCCccccccccc----cccCeeEEEeCCC-
Q 010390 221 MSITSVLYL---KD----EVSIATASAVNSIVKFWDTRNLKAQITQA---WPHAESSSAKET----RLHGISSLSQDSN- 285 (512)
Q Consensus 221 ~~v~~~~~~---~~----~~~l~~~g~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~----~~~~i~~~~~~~~- 285 (512)
..+..+.+. +. +.++.++-.....|.++|+.+++.-.... .+.........+ -..++..|+++|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 456777776 21 34444444456789999999876544321 111000000111 1357999999998
Q ss_pred ---CCEEEEEecCC-eEEEEEc---ccCCCCceEeeeecee-ceeEEEEEEC-CCCCEEEEecCCCCEEEEecCC-CC--
Q 010390 286 ---GVFLTASCMDH-RIYLYNV---LQLDKGPIQHFSGCRI-ESFYVKSEIC-PNASHILSGSSDGNAYVWQVNK-PQ-- 353 (512)
Q Consensus 286 ---~~~l~~~~~dg-~i~i~d~---~~~~~~~~~~~~~~~~-~~~~~~~~~s-~~~~~l~~g~~dg~i~iw~~~~-~~-- 353 (512)
++.|+-....+ .+.-... ++..........+... ......++++ .+|.++++--..+.|..|+..+ .-
T Consensus 232 ~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~ 311 (381)
T 3q6k_A 232 SEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRM 311 (381)
T ss_dssp TTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCG
T ss_pred CCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCcccc
Confidence 77777766554 4444442 2211111111222221 1223446775 6788778877888899999875 21
Q ss_pred CCCceec--cccCCeEEEEeCCCCCCeEEEEe
Q 010390 354 ADPIKLK--SHDGEVTAVNWCPNEAGKIVTSS 383 (512)
Q Consensus 354 ~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~ 383 (512)
.....+. ..-..+.++.+..++ .+.+..+
T Consensus 312 ~n~~~l~~d~~l~~pd~~~i~~~g-~Lwv~sn 342 (381)
T 3q6k_A 312 KNTDVVYTSSRFVFGTDISVDSKG-GLWFMSN 342 (381)
T ss_dssp GGEEEEEECTTCCSEEEEEECTTS-CEEEEEC
T ss_pred CceEEEEECCCccccCeEEECCCC-eEEEEEC
Confidence 1011111 111246777776666 4444443
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.46 E-value=10 Score=39.83 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=33.3
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecc
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL 146 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 146 (512)
..+.+++..++..++++-+.|+++|||++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 46788888888899999999999999999999887654
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.12 E-value=41 Score=30.74 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=36.1
Q ss_pred CCcEEEEEEec-CCCEEEEEeCCC----cEEEEeCCCCe---eeec---ccC--------cCCCEEEEEeeCCC-CCeEE
Q 010390 108 QNAIFDLCWIK-EDTNILTASGDQ----TIKIWDAEKKK---CTGA---LMG--------HTGSIKSLCSHPTN-SDILV 167 (512)
Q Consensus 108 ~~~V~~l~~s~-~~~~l~s~~~dg----~i~iwd~~~~~---~~~~---~~~--------h~~~v~~l~~~~~~-~~~l~ 167 (512)
...|.+|++.| +...|..++..| .|...+ ..++ .+.. +.. ....|.++++.|.+ +..+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35799999998 334455454444 344432 2222 2211 111 11257788888743 35566
Q ss_pred EEeCCCcEEEE
Q 010390 168 SGSRDGSFAIW 178 (512)
Q Consensus 168 s~~~dg~i~vw 178 (512)
.+...+.|...
T Consensus 133 ~g~~~ggl~~S 143 (394)
T 3b7f_A 133 AGTSPQGLFRS 143 (394)
T ss_dssp EEEETTEEEEE
T ss_pred EEecCCcEEEE
Confidence 66655554433
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=77.59 E-value=4.3 Score=38.93 Aligned_cols=87 Identities=7% Similarity=0.058 Sum_probs=52.1
Q ss_pred CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390 151 GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230 (512)
Q Consensus 151 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 230 (512)
.....+.++|+|...+++|-.+.++.++|++........ .+......+.....-.......+|.+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~---------------k~~~~~~~~~ae~e~GlGPlHt~Fd~ 387 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAG---------------KLADPRDVIVGEPELGLGPLHTTFDG 387 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTT---------------CCSCGGGGEEECCBCCSCEEEEEECS
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhc---------------cccCcccceEeeccCCCcccEEEECC
Confidence 345567899999656666667889999998732110000 00000000001111234567889999
Q ss_pred cCCEEEEEeecCCeEEEEeccCc
Q 010390 231 DEVSIATASAVNSIVKFWDTRNL 253 (512)
Q Consensus 231 ~~~~l~~~g~~dg~i~iwd~~~~ 253 (512)
+| ...++-..|..|..|++...
T Consensus 388 ~G-~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 388 RG-NAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SS-EEEEEETTTTEEEEEEHHHH
T ss_pred CC-ceEeeeeecceEEEEeccHH
Confidence 98 56666668999999999764
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.11 E-value=44 Score=30.54 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=36.6
Q ss_pred CcEEEEEEec-C-CCEEEEEeCCCcEEEEeCCCC---eeeeccc----------------CcCCCEEEEEeeCCCCCeEE
Q 010390 109 NAIFDLCWIK-E-DTNILTASGDQTIKIWDAEKK---KCTGALM----------------GHTGSIKSLCSHPTNSDILV 167 (512)
Q Consensus 109 ~~V~~l~~s~-~-~~~l~s~~~dg~i~iwd~~~~---~~~~~~~----------------~h~~~v~~l~~~~~~~~~l~ 167 (512)
..|.++++.| + ...|..+...+.|...+ ..+ +.+..+. .....+.+|.+.|.++..++
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 4688899987 2 45666666666555543 222 2222111 11235889999885445555
Q ss_pred EEeCCCcEE
Q 010390 168 SGSRDGSFA 176 (512)
Q Consensus 168 s~~~dg~i~ 176 (512)
.+..++.|.
T Consensus 194 vg~~~ggl~ 202 (394)
T 3b7f_A 194 IGMSSGGVF 202 (394)
T ss_dssp EEEETBEEE
T ss_pred EEECCCCEE
Confidence 554444443
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.68 E-value=66 Score=32.35 Aligned_cols=100 Identities=11% Similarity=0.095 Sum_probs=57.3
Q ss_pred cCCeEEEEEcccCCC-----CceEeeeeceeceeEEEEEECCCCCEEEEecCCCC--EEEEecCCCCCCCce-ec-cccC
Q 010390 294 MDHRIYLYNVLQLDK-----GPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN--AYVWQVNKPQADPIK-LK-SHDG 364 (512)
Q Consensus 294 ~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~--i~iw~~~~~~~~~~~-~~-~h~~ 364 (512)
..+.|...|+..... .....+-.+.....+..+.+..+ .++++...++. +.++++.++...... +. ...+
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 467899999876421 22222222223345666788765 56666666664 667776655311122 21 1134
Q ss_pred CeEEEEeCCCCCCeEEEEeC---CCcEEEEeCC
Q 010390 365 EVTAVNWCPNEAGKIVTSSD---DYTVRLWSLE 394 (512)
Q Consensus 365 ~v~~v~~~~~~~~~l~s~~~---dg~i~vwd~~ 394 (512)
.+......+++..++++.+. -+.+..+|+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 67777777777556666553 3678888876
No 354
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=76.52 E-value=5 Score=36.04 Aligned_cols=107 Identities=14% Similarity=-0.002 Sum_probs=56.1
Q ss_pred EeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE---eCCCCCEEEEE-ecCCeEEEEEcccCCCCceEe
Q 010390 238 ASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS---QDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQH 313 (512)
Q Consensus 238 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~ 313 (512)
.++.||.|.-+|..+++.......... .++.... ...++..++.. +.||.|..++..++.......
T Consensus 15 v~t~dG~l~Ald~~tG~~~W~~~~~~~----------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~ 84 (339)
T 2be1_A 15 AADVEGGLHAVDRRNGHIIWSIEPENF----------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLS 84 (339)
T ss_dssp EEETTSCEEEEETTTTEEEEEECGGGS----------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCcc----------CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeec
Confidence 366899999999999988876543200 0111000 00133334343 578999888875532111111
Q ss_pred eeeceeceeEEE---EEE-C----CCCCEEEEecCCCCEEEEecCCCCC
Q 010390 314 FSGCRIESFYVK---SEI-C----PNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 314 ~~~~~~~~~~~~---~~~-s----~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
........++.. ..+ . ..+..+++|+.+|.+...|+.+++.
T Consensus 85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 100000011110 000 0 1456788899999999999888765
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.56 E-value=69 Score=30.20 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=34.8
Q ss_pred CcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCe---eeecc----c-----CcCCCEEEEEeeCC
Q 010390 109 NAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKK---CTGAL----M-----GHTGSIKSLCSHPT 161 (512)
Q Consensus 109 ~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~----~-----~h~~~v~~l~~~~~ 161 (512)
..-+.|+|.|++. .|+.+...|.|++++..... .+..+ . ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999986 45556688999999754321 11111 1 11356889999996
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.94 E-value=1e+02 Score=32.22 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=30.7
Q ss_pred ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390 221 MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 221 ~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~ 259 (512)
..+.+++..++...+++.+ .|+++++|++.++++....
T Consensus 236 ~~~~~~~~~~~~~~lftl~-~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLS-LDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEE-TTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEE-CCCEEEEEECCCCCeEeee
Confidence 3567777788888888766 8999999999999877654
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=68.84 E-value=69 Score=29.17 Aligned_cols=160 Identities=9% Similarity=0.058 Sum_probs=83.2
Q ss_pred cEEEEeCCCC--eeeecccC------cCCCEEEEEee---CC---CCCeE-EEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 131 TIKIWDAEKK--KCTGALMG------HTGSIKSLCSH---PT---NSDIL-VSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 131 ~i~iwd~~~~--~~~~~~~~------h~~~v~~l~~~---~~---~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
.|.+||+.++ +.++.+.- ....+..+.+. |. +..++ ++=...+.|.|+|+.+++.-.........
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5889999998 87766532 23467888887 22 11333 33334678999999877643322110000
Q ss_pred eecccccccccccccccceecccccccEEEEEEeec----CCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD----EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
.........+... .-...+..|+.+|+ ++.|.........+ |.+.+.-...... .......
T Consensus 204 -----d~~~~~~i~G~~~----~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~l--y~V~T~~L~~~~~----~~~v~~~ 268 (381)
T 3q6k_A 204 -----ERPTKFDYGGKEY----EFKAGIFGITLGDRDSEGNRPAYYLAGSAIKV--YSVNTKELKQKGG----KLNPELL 268 (381)
T ss_dssp -----CSCEEEEETTEEE----EECCCEEEEEECCCCTTSCCEEEEEESSCSEE--EEEEHHHHSSTTC----CCCCEEE
T ss_pred -----ccCcceEECCEEe----EeccCceEEEecCCcCCCCeEEEEEECCCCcE--EEEEHHHhhCcch----hhceEEe
Confidence 0000000001100 11347899999998 67777655333333 3333211110000 0000122
Q ss_pred ccc---cCeeEEEeC-CCCCEEEEEecCCeEEEEEccc
Q 010390 272 TRL---HGISSLSQD-SNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 272 ~~~---~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
+.. ..-..++++ .+|.++++--..+.|..|+...
T Consensus 269 G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 269 GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 222 233456775 6787777777889999999753
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=68.08 E-value=59 Score=28.10 Aligned_cols=224 Identities=11% Similarity=0.064 Sum_probs=112.8
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN 189 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 189 (512)
.|..++.... ..++. . ||.|+.|-....-.+..-......|..++.... ..++. . ||.|..|-.......-..
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 5666665422 22333 4 899999976543222111112236777776542 33443 4 899999986543322100
Q ss_pred cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390 190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA 269 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 269 (512)
......|..++..... .++ -. +|.|+.|-.......-.
T Consensus 98 ---------------------------~~~~~~v~~ia~G~~h-s~a--l~-~G~v~~wG~n~~gqlg~----------- 135 (282)
T 3qhy_B 98 ---------------------------AEARSGVDAIAAGAWA-SYA--LK-DGKVIAWGDDSDGQTTV----------- 135 (282)
T ss_dssp ---------------------------GGGSSSEEEEEEETTE-EEE--EE-TTEEEEEECCTTSTTSC-----------
T ss_pred ---------------------------cccCCCeEEEECcCCE-EEE--Ee-CCeEEEecCCCCCcCCC-----------
Confidence 0001256666654332 222 23 89999997664322210
Q ss_pred ccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEec
Q 010390 270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQV 349 (512)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~ 349 (512)
.......|..++.-.+.. +.-. ||.|+.|-........+. ......+..++...+.. ++. .||.|+.|-.
T Consensus 136 ~~~~~~~i~~i~~G~~~~--~~l~-~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~ 205 (282)
T 3qhy_B 136 PAEAQSGVTALDGGVYTA--LAVK-NGGVIAWGDNYFGQTTVP----AEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGD 205 (282)
T ss_dssp CGGGGSSEEEEEECSSEE--EEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSSEE-EEE--ETTEEEEEEC
T ss_pred CccCCCCeEEEEcccCEE--EEEE-CCEEEEecCCCCCCCCCc----eecCCCeEEEEecCCEE-EEE--ECCeEEEEEC
Confidence 111223466665544332 2233 799999986542221111 11122344555443322 333 4899999976
Q ss_pred CCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 350 NKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 350 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
......- ....-...|..|+..... .++.. ||.|..|-.....
T Consensus 206 n~~gqlg-~p~~~~~~v~~i~~G~~h--~~al~--~g~v~~wG~n~~g 248 (282)
T 3qhy_B 206 NRYKQTT-VPTEALSGVSAIASGEWY--SLALK--NGKVIAWGSSRTA 248 (282)
T ss_dssp CTTSTTC-CCGGGGSSCCEEEECSSC--EEEEE--TTEEEEESTTCCC
T ss_pred CCCCCCC-CCcccCCCceEEEcCCCE--EEEEE--CCEEEEecCCCCc
Confidence 5433221 111123457777765543 33333 9999999876543
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.89 E-value=12 Score=40.21 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=31.9
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecc
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL 146 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 146 (512)
..+.+++..++..+|++-+.|+++|||++.+++++.+.
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 35566677778899999999999999999999987664
No 360
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=58.70 E-value=1.6e+02 Score=29.97 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=38.3
Q ss_pred CCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCeeeecccC-------cCCCEEEEEeeCCCCCeEEEEe
Q 010390 108 QNAIFDLCWIKE-DTNILTASGDQTIKIWDAEKKKCTGALMG-------HTGSIKSLCSHPTNSDILVSGS 170 (512)
Q Consensus 108 ~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~ 170 (512)
.+.|.+|+++|. ...++.++..+.|...+ ..++.=..+.. ....|.+|++.|.++..++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 468999999995 45666777777666654 23322111211 1246999999986545555554
No 361
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=55.72 E-value=1e+02 Score=26.62 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=119.0
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 131 (512)
.|..|++ .. ...++. . ||.|..|-.+..-..- .+. .....|..++...+ ..++. . ||.
T Consensus 25 ~i~~ia~---G~-~h~~~l-~-~G~v~~wG~n~~Gqlg---------~p~----~~~~~i~~ia~G~~-hs~~l-~-~G~ 82 (282)
T 3qhy_B 25 GVDAIAG---GY-FHGLAL-K-GGKVLGWGANLNGQLT---------MPA----ATQSGVDAIAAGNY-HSLAL-K-DGE 82 (282)
T ss_dssp SCCEEEE---CS-SEEEEE-E-TTEEEEEECCSSSTTS---------CCG----GGGSCCCEEEECSS-EEEEE-E-TTE
T ss_pred CCcEEEe---CC-CeEEEE-E-CCEEEEEeCCCCCCCC---------CCc----cCCCCEEEEEeCCC-EEEEE-E-CCE
Confidence 5777777 32 233444 5 9999999765432210 000 11235666665432 23333 4 899
Q ss_pred EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390 132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK 211 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (512)
|..|-....-.+..-..-...|..++.-. ...+.-. ||.|..|-..........
T Consensus 83 v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~---------------------- 136 (282)
T 3qhy_B 83 VIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVP---------------------- 136 (282)
T ss_dssp EEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCC----------------------
T ss_pred EEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCC----------------------
Confidence 99997654322111111134688887764 3344445 899999976543322100
Q ss_pred cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEE
Q 010390 212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTA 291 (512)
Q Consensus 212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 291 (512)
......|..++.-... .++. . ||.|..|-.......-. .......|..++.-.+.. ++.
T Consensus 137 -----~~~~~~i~~i~~G~~~-~~~l--~-~G~v~~wG~n~~gqlg~-----------p~~~~~~v~~i~~G~~hs-~al 195 (282)
T 3qhy_B 137 -----AEAQSGVTALDGGVYT-ALAV--K-NGGVIAWGDNYFGQTTV-----------PAEAQSGVDDVAGGIFHS-LAL 195 (282)
T ss_dssp -----GGGGSSEEEEEECSSE-EEEE--E-TTEEEEEECCTTSTTSC-----------CGGGGSSEEEEEECSSEE-EEE
T ss_pred -----ccCCCCeEEEEcccCE-EEEE--E-CCEEEEecCCCCCCCCC-----------ceecCCCeEEEEecCCEE-EEE
Confidence 0112346555543332 2222 2 78899997664332210 011123466666544433 333
Q ss_pred EecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEe
Q 010390 292 SCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNW 371 (512)
Q Consensus 292 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~ 371 (512)
.||.|+.|-........+.. .....+..++.......+++ ||.|+.|=....... .. ...|.+|+-
T Consensus 196 --~~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~gq~-~v----~~~v~~iaa 261 (282)
T 3qhy_B 196 --KDGKVIAWGDNRYKQTTVPT----EALSGVSAIASGEWYSLALK---NGKVIAWGSSRTAPS-SV----QSGVSSIEA 261 (282)
T ss_dssp --ETTEEEEEECCTTSTTCCCG----GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCCCCG-GG----SSCEEEEEE
T ss_pred --ECCeEEEEECCCCCCCCCCc----ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCCccc-cC----CCCcEEEEE
Confidence 59999999864432211110 11122444444433333333 888999966543321 11 235667766
Q ss_pred CCC
Q 010390 372 CPN 374 (512)
Q Consensus 372 ~~~ 374 (512)
...
T Consensus 262 G~~ 264 (282)
T 3qhy_B 262 GPN 264 (282)
T ss_dssp CSS
T ss_pred CcC
Confidence 554
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=53.60 E-value=61 Score=32.38 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=28.3
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecc
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL 146 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 146 (512)
.|.++.+ +..+|++-+.|.++|+||+.+++++.+.
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 4555544 5779999999999999999999877654
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.22 E-value=10 Score=40.73 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=29.2
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 366 VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 366 v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
+.+++..++. .++++-+.|+++|||++.+++|+.+.
T Consensus 240 ~vs~~~~~~~-~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEETTT-TEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccCCc-cEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4445555666 79999999999999999999987763
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=42.83 E-value=23 Score=35.27 Aligned_cols=37 Identities=8% Similarity=0.233 Sum_probs=29.7
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
..|.++.+. . .++++-+.|.++|+|++.+++++....
T Consensus 222 ~~Is~~~~~--~-~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLFH--E-RYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEET--T-TEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEeccC--C-cEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 456666553 3 799999999999999999999877644
No 365
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=40.42 E-value=3e+02 Score=27.69 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=36.5
Q ss_pred CcEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCeeeecccCc-------CCCEEEEEeeCCCCCeEEEEe
Q 010390 109 NAIFDLCWIKED-TNILTASGDQTIKIWDAEKKKCTGALMGH-------TGSIKSLCSHPTNSDILVSGS 170 (512)
Q Consensus 109 ~~V~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~ 170 (512)
+.|..|+++|.. ..++.+...+.|..++ ..++.-..+..+ ...|.+|++.|.+++.++.+.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 389999999953 4566666566666654 223221112111 246999999996655555554
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=39.77 E-value=70 Score=31.21 Aligned_cols=57 Identities=9% Similarity=0.062 Sum_probs=35.7
Q ss_pred EEEEECCCCCEEEEecCC------------CCEEEEecCCCCCCCceeccc-cCCeEEEEeCCCCCCeEEEE
Q 010390 324 VKSEICPNASHILSGSSD------------GNAYVWQVNKPQADPIKLKSH-DGEVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 324 ~~~~~s~~~~~l~~g~~d------------g~i~iw~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~ 382 (512)
-.++|++.|+++++-..+ +.+.+.+..+++. ...+.++ ...++.++|+||+ +.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-~rf~~~P~gaE~TG~~fspDg-~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVGPIGCEVTGISFSPDQ-KTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-EEEEECCTTCEEEEEEECTTS-SEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE-EEEEeCCCCccCcCeeECCCC-CEEEEE
Confidence 458999999977765432 2244445444443 2334443 5689999999998 555443
No 367
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=39.17 E-value=3.1e+02 Score=27.50 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=36.4
Q ss_pred CCCCEEEEecCCCC------CCCce-ec-cccCCeEEEEeCCCCCCeEEEEeCCC--cEEEEeCCCCc
Q 010390 340 SDGNAYVWQVNKPQ------ADPIK-LK-SHDGEVTAVNWCPNEAGKIVTSSDDY--TVRLWSLENSR 397 (512)
Q Consensus 340 ~dg~i~iw~~~~~~------~~~~~-~~-~h~~~v~~v~~~~~~~~~l~s~~~dg--~i~vwd~~~~~ 397 (512)
..+.|...++.+.. ..... +. .....+..+.|..+ .++++...++ .|.++++.+++
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEEETTEEEEEEECEETTE
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCc
Confidence 35779999987642 22233 22 22446888999875 5788887776 46777776664
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=38.81 E-value=2.1e+02 Score=25.35 Aligned_cols=257 Identities=11% Similarity=0.044 Sum_probs=128.7
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEE---eCCC--
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIW---DAEK-- 139 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iw---d~~~-- 139 (512)
...+++-+.+|.|+--.+..-... ........-..++ ..+.+..+.-....+.|+.-+..|.++-. ++..
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~----~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~ 77 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQ----KRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS 77 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHH----C--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhc----ccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 356778888999987654321000 0000000011112 23456555555566777777778876544 3332
Q ss_pred ----Ceeeeccc--CcCCCEEEEEeeCC--CCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390 140 ----KKCTGALM--GHTGSIKSLCSHPT--NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK 211 (512)
Q Consensus 140 ----~~~~~~~~--~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (512)
|.++..+- .....|.++...++ ....++..+.+|.++--.+..-..... .+.
T Consensus 78 r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r--------------------~G~ 137 (327)
T 3uc1_A 78 RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS--------------------GGI 137 (327)
T ss_dssp SSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS--------------------SCE
T ss_pred ccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc--------------------Cce
Confidence 33322221 12345666544432 237899999999999988764332211 000
Q ss_pred cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--CccceecccCCCccccccccccccCeeEEEeCCCCCEE
Q 010390 212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL 289 (512)
Q Consensus 212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 289 (512)
....+.. ...+..+........++... ..|.+..+... .-...-...... .. ........|.++...+++..+
T Consensus 138 ~~i~lke-~D~lv~~~~~~~~d~ill~T-~~G~~~rf~~~~~eip~~gr~a~Gv--~~-i~L~~~d~Vv~~~~~~~~~~l 212 (327)
T 3uc1_A 138 VAVNLRD-NDELVGAVLCSAGDDLLLVS-ANGQSIRFSATDEALRPMGRATSGV--QG-MRFNIDDRLLSLNVVREGTYL 212 (327)
T ss_dssp ESCBCCT-TCCEEEEEEECTTCEEEEEE-TTSEEEEEECCTTTSCCCCTTSBCE--ES-SCCCTTCCEEEEEECCTTCEE
T ss_pred EEEEECC-CCEEEEEEEecCCCEEEEEE-CCCeEEEEECcccccCcCCcCCCCe--ee-ecCCCCCEEEEEEEECCCCEE
Confidence 0111222 33455554444555555544 68988888776 322111000000 00 111223456666666666788
Q ss_pred EEEecCCeEEEEEcccCCCC-----ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390 290 TASCMDHRIYLYNVLQLDKG-----PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351 (512)
Q Consensus 290 ~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 351 (512)
+..+..|.++.-.+...... -+..+.-......+..+....+...++..+.+|.+.-++...
T Consensus 213 l~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 213 LVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 89999999999887553221 122221111012233333333445566666778777777654
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=37.26 E-value=2.1e+02 Score=25.03 Aligned_cols=210 Identities=10% Similarity=0.084 Sum_probs=105.6
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC
Q 010390 164 DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS 243 (512)
Q Consensus 164 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg 243 (512)
..+++.+.+|.|+--.+..-....... .+.....+. ....+..+........++... ..|
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~------------------~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T-~~G 68 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGG------------------KGLSSFDLN-DGDEIVIALCVNTHDYLFMIS-NEG 68 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSC------------------CCEECCCCC-TTCCEEEEEEEETTCEEEEEE-TTS
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCC------------------CCceecccC-CCCEEEEEEEECCCCEEEEEE-CCC
Confidence 678889999999987765332111000 000000111 223444544444455555434 688
Q ss_pred eEEEEeccCccceecccCCCccccccccccccCeeEEEeCC---CCCEEEEEecCCeEEEEEcccCCCCc---eEeeeec
Q 010390 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS---NGVFLTASCMDHRIYLYNVLQLDKGP---IQHFSGC 317 (512)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~ 317 (512)
.++-+....-..........+-...........|..+..-+ +..+|+..+..|.++...+....... +..+.-.
T Consensus 69 ~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~ 148 (312)
T 1suu_A 69 KLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN 148 (312)
T ss_dssp EEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC
T ss_pred eEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC
Confidence 87776654321110000000000000111123344443322 45678888999999999886543211 1111111
Q ss_pred eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC--------CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390 318 RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD--------PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVR 389 (512)
Q Consensus 318 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~--------~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 389 (512)
. ...+..+........++..+.+|.+..+....-... ...+.. .+.|.++....++ ..+++.+..|..+
T Consensus 149 ~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~-~~l~~vt~~G~~k 225 (312)
T 1suu_A 149 D-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKEN-PYLLIVSENGYGK 225 (312)
T ss_dssp T-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTC-SEEEEEETTSEEE
T ss_pred C-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCC-CeEEEEECCCceE
Confidence 1 233444444444567878888999888887542111 011222 3456666555445 5788888899888
Q ss_pred EEeCCCC
Q 010390 390 LWSLENS 396 (512)
Q Consensus 390 vwd~~~~ 396 (512)
..++..-
T Consensus 226 r~~~~e~ 232 (312)
T 1suu_A 226 RLNMSKI 232 (312)
T ss_dssp EEEGGGS
T ss_pred EEEHHHh
Confidence 8887643
No 370
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.53 E-value=81 Score=30.77 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=39.5
Q ss_pred cEEEEEEecCCCEEEEEeCC------------CcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEE
Q 010390 110 AIFDLCWIKEDTNILTASGD------------QTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVS 168 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s 168 (512)
..-.|.|+|.|.+++.-..+ ..+.+.+..+++..+.+.++. ..++.++|+|++..+++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45668999999866654322 235566777777766665543 589999999998444443
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=30.59 E-value=1.3e+02 Score=29.22 Aligned_cols=58 Identities=7% Similarity=0.029 Sum_probs=35.6
Q ss_pred EEEEEECCCCCEEEEecC------------CCCEEEEecCCCCCCCceeccc-cCCeEEEEeCCCCCCeEEEE
Q 010390 323 YVKSEICPNASHILSGSS------------DGNAYVWQVNKPQADPIKLKSH-DGEVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 323 ~~~~~~s~~~~~l~~g~~------------dg~i~iw~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~ 382 (512)
.-.++|+++|.+.++... .+.+..++..+++. ...+.+. ...++.++|+||+ +.|..+
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel-~~fl~~P~~aEpnGiafSPD~-ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVGPIGCEVTGISFSPDQ-KTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE-EEEEECCTTCEEEEEEECTTS-SEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE-EEEEeCCCCccccCCEECCCC-CEEEEE
Confidence 456899999988774322 11455555555543 2233332 3579999999999 554443
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=29.40 E-value=3.2e+02 Score=24.69 Aligned_cols=303 Identities=8% Similarity=0.006 Sum_probs=0.0
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--- 140 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--- 140 (512)
....++.-..||.|..|=.+..-+.-.....................+.-.+ ...+.+.-..||.|..|-....
T Consensus 9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~---G~~~~~~l~~~G~v~~wG~n~~GqL 85 (389)
T 3kci_A 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG---GEQTLFAVTADGKLYATGYGAGGRL 85 (389)
T ss_dssp ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE---ETTEEEEEETTSCEEEEECCGGGTT
T ss_pred CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe---CCCeEEEEcCCCcEEEEECCCCCCC
Q ss_pred ---------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390 141 ---------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK 211 (512)
Q Consensus 141 ---------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (512)
.+...-......+..++++.-. ...+.-..||.|..|-......+-...... ...
T Consensus 86 G~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~-~h~~al~~~G~v~~wG~n~~GqLG~g~~~~---------------~~~ 149 (389)
T 3kci_A 86 GIGGTESVSTPTLLESIQHVFIKKVAVNSGG-KHCLALSSEGEVYSWGEAEDGKLGHGNRSP---------------CDR 149 (389)
T ss_dssp SSSSSCCEEEEEECGGGTTSCEEEEEECTTC-SEEEEEETTSCEEEEECCGGGTTCSSSCCC---------------EEE
T ss_pred CCCCcCCccCCEEcccccCCceeEEEECcCC-CeEEEEcCCCCEEEEeCCCCCcCCCCCCcc---------------CcC
Q ss_pred cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccccccccCeeEEEeCCCCCEEE
Q 010390 212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290 (512)
Q Consensus 212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (512)
...........|..++.-.....++. .+|.|+.|-... ++.-.........+..........|..++........+
T Consensus 150 p~~v~~l~~~~i~~va~G~~hs~alt---~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~ 226 (389)
T 3kci_A 150 PRVIESLRGIEVVDVAAGGAHSACVT---AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL 226 (389)
T ss_dssp EEECGGGTTSCEEEEEECSSEEEEEE---TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEE
T ss_pred CeEecccCCCeEEEEEeCcCeEEEEe---CCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEE
Q ss_pred EEecCCeEEEEE------cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEec-----------CCCC
Q 010390 291 ASCMDHRIYLYN------VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQV-----------NKPQ 353 (512)
Q Consensus 291 ~~~~dg~i~i~d------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~-----------~~~~ 353 (512)
+-..+|.|+.|- +-....................-..++.-..+.++-..+|.|+.|=. ....
T Consensus 227 ~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 306 (389)
T 3kci_A 227 CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 306 (389)
T ss_dssp EEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred EEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcccc
Q ss_pred CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 010390 354 ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391 (512)
Q Consensus 354 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 391 (512)
.+..........|..|+... ...+....||.|+.|
T Consensus 307 ~P~~v~~l~~~~v~~ia~G~---~h~~al~~~G~v~~w 341 (389)
T 3kci_A 307 RPRQVQGLQGKKVIAIATGS---LHCVCCTEDGEVYTW 341 (389)
T ss_dssp EEEECGGGTTCCEEEEEECS---SEEEEEETTCCEEEE
T ss_pred CCeEeccCCCCCEEEEEecc---CeEEEECCCCCEEEe
No 373
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=27.20 E-value=4.9e+02 Score=26.12 Aligned_cols=108 Identities=13% Similarity=0.132 Sum_probs=54.0
Q ss_pred CCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceecccc----CCCcEEEEEEec-CCCEEE
Q 010390 51 TPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVA----HQNAIFDLCWIK-EDTNIL 124 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~l~~s~-~~~~l~ 124 (512)
+.|.+|.+ +|.. ..+.++...|.|..++-.... . ..+....+ ....|.+|++.| +...++
T Consensus 23 g~i~~i~~---~p~~~~~~~~~~~~ggv~rS~D~G~t--W---------~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~ 88 (737)
T 2cn3_A 23 GFMPGIVF---NETEKDLIYARAAIGGAYRWDPSTET--W---------IPLLDHFQMDEYSYYGVESIATDPVDPNRVY 88 (737)
T ss_dssp SCCCEEEE---CSSSTTCEEEECSSSCEEEEETTTTE--E---------EECCTTCCGGGGGGGCEEEEEECSSSTTCEE
T ss_pred ceeeEEEE---CCCCCCEEEEEecCCcEEEeCCCCCC--E---------EECcCccCcccccCCCcceEEeCCCCCCEEE
Confidence 37899999 7753 455556655665555422211 0 11111001 124699999998 334444
Q ss_pred EEeCC-------CcEEEEeCCC-Ce---eeec-cc--Cc---CCCEEEEEeeCCCCCeEEEEeCC
Q 010390 125 TASGD-------QTIKIWDAEK-KK---CTGA-LM--GH---TGSIKSLCSHPTNSDILVSGSRD 172 (512)
Q Consensus 125 s~~~d-------g~i~iwd~~~-~~---~~~~-~~--~h---~~~v~~l~~~~~~~~~l~s~~~d 172 (512)
.+... +...||.-.+ |+ .+.. +. .+ ...+..|+++|.++..++.+...
T Consensus 89 v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 89 IVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp EEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred EEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 44321 1244554333 32 2211 11 00 11346789999876777777643
No 374
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=26.85 E-value=2.6e+02 Score=27.17 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=42.7
Q ss_pred CcEEEEEEecCCCEEEEEeC------------CCcEEEEeCCCCeeeecccCc-CCCEEEEEeeCCCCCeEEEEeC
Q 010390 109 NAIFDLCWIKEDTNILTASG------------DQTIKIWDAEKKKCTGALMGH-TGSIKSLCSHPTNSDILVSGSR 171 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~ 171 (512)
+....|.|.++|.+.+.... ...|..++..+++....+... ...++.++|+|++..++++...
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 56788999999987773321 125777777778766655443 3568999999998545555443
No 375
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=24.93 E-value=5.6e+02 Score=26.01 Aligned_cols=158 Identities=14% Similarity=0.123 Sum_probs=70.6
Q ss_pred cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCe-
Q 010390 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHR- 297 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~- 297 (512)
...|.+|+++|....++.++...+.|...+-. ++ .......... ........+.+|+++|. ...++++..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg-G~-tW~~~~~~~~---~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~ 88 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG-TS-KWIPLNDFIE---AQDMNIMGTESIALDPNNPDRLYLAQGRYVG 88 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT-TT-EEEESCTTCC---GGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC-CC-CeeECccCCC---cccccCCceeEEEECCCCCCEEEEEeCccCC
Confidence 35899999999765444446566666544322 21 1111110000 00002346899999884 344544432211
Q ss_pred ---EEEEEcccCCCCceEeeee-c------eeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceec------
Q 010390 298 ---IYLYNVLQLDKGPIQHFSG-C------RIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLK------ 360 (512)
Q Consensus 298 ---i~i~d~~~~~~~~~~~~~~-~------~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~------ 360 (512)
-.||--.+.- ..-..... . .....+..++++|. .+.++++...+. ||....+........
T Consensus 89 ~~~~~v~~S~DgG-~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~ 165 (789)
T 1sqj_A 89 DEWAAFYVSEDRG-QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAF 165 (789)
T ss_dssp SSCCEEEEESSTT-SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCC
T ss_pred CcccEEEEECCCC-CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCcccc
Confidence 2333322111 00011100 0 00001234666664 345556654443 343333322222221
Q ss_pred cccCCeEEEEeCCCCCCeEEEEeCC
Q 010390 361 SHDGEVTAVNWCPNEAGKIVTSSDD 385 (512)
Q Consensus 361 ~h~~~v~~v~~~~~~~~~l~s~~~d 385 (512)
.....+..+.++|..+..++.+..+
T Consensus 166 ~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 166 TNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp STTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1124588899988654566666554
Done!