BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010392
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 168/314 (53%), Gaps = 31/314 (9%)
Query: 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI 147
+IRN +IIAH+DHGK+TL D +++ D + ++ +++DS DLERERGITI +++ ++
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTL 61
Query: 148 TYNDT-----KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE 202
Y + ++N IDTPGH DF EV R L EG LLVVD+ +G QT A+E
Sbjct: 62 DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121
Query: 203 FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN 262
VV V+NKID P+A P+ V E + ++ATD A K G+ +
Sbjct: 122 MDLEVVPVLNKIDLPAADPERVAEE-IEDIVGIDATD---------AVRCSAKTGVGVQD 171
Query: 263 LADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322
+ E ++R IP P + +G LQ L + +D + G +++ R+ G LRKG +V+
Sbjct: 172 -------VLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVK 224
Query: 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQ---IGE--TIADKVS 377
V ++ + R+ +F ++ R + G + VC I DI +G+ T+A +
Sbjct: 225 VMSTGQTYNADRLG-IFTPKQVDRTELKCGEVGWL--VCAIKDIHGAPVGDTLTLARNPA 281
Query: 378 GKPLPSIKVEEPTV 391
K LP K +P V
Sbjct: 282 EKALPGFKKVKPQV 295
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 168/314 (53%), Gaps = 31/314 (9%)
Query: 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI 147
+IRN +IIAH+DHGK+TL D +++ D + ++ +++DS DLERERGITI +++ ++
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTL 61
Query: 148 TYNDT-----KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE 202
Y + ++N IDTPGH DF EV R L EG LLVVD+ +G QT A+E
Sbjct: 62 DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121
Query: 203 FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN 262
VV V+NKID P+A P+ V E + ++ATD A K G+ +
Sbjct: 122 MDLEVVPVLNKIDLPAADPERVAEE-IEDIVGIDATD---------AVRCSAKTGVGVQD 171
Query: 263 LADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322
+ E ++R IP P + +G LQ L + +D + G +++ R+ G LRKG +V+
Sbjct: 172 -------VLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVK 224
Query: 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQ---IGE--TIADKVS 377
V ++ + R+ +F ++ R + G + VC I DI +G+ T+A +
Sbjct: 225 VMSTGQTYNADRLG-IFTPKQVDRTELKCGEVGWL--VCAIKDIHGAPVGDTLTLARNPA 281
Query: 378 GKPLPSIKVEEPTV 391
K LP K +P V
Sbjct: 282 EKALPGFKKVKPQV 295
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 167/320 (52%), Gaps = 35/320 (10%)
Query: 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSK 143
M + ++RN IIAHVDHGK+TL D +L+ + + +E+++D+ D+ERERGIT+ +
Sbjct: 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK-REQLLDTLDVERERGITVKMQ 59
Query: 144 NTSITY-----NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLK 198
+ Y N K+++IDTPGH DF EV R L EG LL++D+ +G QT
Sbjct: 60 AVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW 119
Query: 199 KALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGL 258
KA+E ++ V+NKID PSA D V E+ D + +AI AS +G
Sbjct: 120 KAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVL----GLDPE---EAILASAKEGIG-- 170
Query: 259 SPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKG 318
+ + E+I+ IP P+ + L+ L + YD ++G +A R+ G ++ G
Sbjct: 171 --------IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPG 222
Query: 319 MEVRVCTSEDSCRYARI-SELFVYEKFSRVSAEIVAAGDI----CAVCGIDDIQIGETI- 372
++ + ++ + ++ KF ++S AGD+ ++ + DI+IG+TI
Sbjct: 223 DKIMLMSTGKEYEVTEVGAQTPKMTKFDKLS-----AGDVGYIAASIKDVRDIRIGDTIT 277
Query: 373 -ADKVSGKPLPSIKVEEPTV 391
A + +P+P + +P V
Sbjct: 278 HAKNPTKEPVPGFQPAKPMV 297
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 165/318 (51%), Gaps = 35/318 (11%)
Query: 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNT 145
+ ++RN IIAHVDHGK+TL D +L+ + + +E+++D+ D+ERERGIT+ +
Sbjct: 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK-REQLLDTLDVERERGITVKXQAV 61
Query: 146 SITY-----NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKA 200
Y N K+++IDTPGH DF EV R L EG LL++D+ +G QT KA
Sbjct: 62 RXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA 121
Query: 201 LEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSP 260
+E ++ V+NKID PSA D V E+ D + +AI AS +G
Sbjct: 122 VEQDLVIIPVINKIDLPSADVDRVKKQIEEVL----GLDPE---EAILASAKEGIG---- 170
Query: 261 DNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGME 320
+ + E+I+ IP P+ + L+ L + YD ++G +A R+ G ++ G +
Sbjct: 171 ------IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDK 224
Query: 321 VRVCTSEDSCRYARI-SELFVYEKFSRVSAEIVAAGDI----CAVCGIDDIQIGETI--A 373
+ + ++ + ++ KF ++S AGD+ ++ + DI+IG+TI A
Sbjct: 225 IXLXSTGKEYEVTEVGAQTPKXTKFDKLS-----AGDVGYIAASIKDVRDIRIGDTITHA 279
Query: 374 DKVSGKPLPSIKVEEPTV 391
+ +P+P + +P V
Sbjct: 280 KNPTKEPVPGFQPAKPXV 297
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 97/162 (59%), Gaps = 20/162 (12%)
Query: 73 AETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL 132
A T + +S + + +++RN+++IAHVDHGK+TL D+++++A + + + R D+
Sbjct: 3 AFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKD 62
Query: 133 ERERGITILSKNTSITY------------------NDTKINIIDTPGHSDFGGEVERILN 174
E+ERGITI K+T+I+ N IN+ID+PGH DF EV L
Sbjct: 63 EQERGITI--KSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALR 120
Query: 175 MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDR 216
+ +G L+VVD++EG QT VL++AL VVV+NK+DR
Sbjct: 121 VTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 97/162 (59%), Gaps = 20/162 (12%)
Query: 73 AETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL 132
A T + +S + + +++RN+++IAHVDHGK+TL D+++++A + + + R D+
Sbjct: 3 AFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKD 62
Query: 133 ERERGITILSKNTSITY------------------NDTKINIIDTPGHSDFGGEVERILN 174
E+ERGITI K+T+I+ N IN+ID+PGH DF EV L
Sbjct: 63 EQERGITI--KSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALR 120
Query: 175 MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDR 216
+ +G L+VVD++EG QT VL++AL VVV+NK+DR
Sbjct: 121 VTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162
>pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio
Parahaemolyticus Rimd 2210633
Length = 332
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 69/96 (71%)
Query: 361 CGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLY 420
G+ +++I +TI + + + LP++ V+EPTV +F +NTSPF G EG +VTSRN+ +RL
Sbjct: 4 TGLGELKISDTICAQNAVEALPALSVDEPTVTXTFQVNTSPFAGXEGXFVTSRNILERLE 63
Query: 421 RELERNLAMRVADGETADTFIVSGRGTLHITILIEN 456
+EL N+A+RV + D F VSGRG LH++ILIEN
Sbjct: 64 KELVHNVALRVEQTDDPDKFRVSGRGELHLSILIEN 99
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 81/130 (62%), Gaps = 2/130 (1%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIM--DSNDLERERGITILSKNTS 146
I NI ++AHVD GKTTL +++L + + +V + D+ LER+RGITI + TS
Sbjct: 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 61
Query: 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA 206
+ +TK+NIIDTPGH DF EV R L++++G +L++ + +G QTR + + G
Sbjct: 62 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 121
Query: 207 VVVVVNKIDR 216
+ +NKID+
Sbjct: 122 TIFFINKIDQ 131
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE--RIMDSNDLERERGITILSKNTS 146
+RNI I AH+D GKTT + +L V E MD + ERERGITI + T+
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA 206
+ D +INIIDTPGH DF EVER + +++G ++V DS +G PQ+ V ++A ++
Sbjct: 72 CFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 207 VVVVVNKIDRPSA 219
+ NK+D+ A
Sbjct: 132 RIAFANKMDKTGA 144
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 18/226 (7%)
Query: 284 EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+ +G L LA + D + GR+ R+++G L G V T R R++ L
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTK---GRKERVARLLRMHA 360
Query: 344 FSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKP-LPSIKVEEPTVKMSFSINTSPF 402
R E + AGD+ AV G+ + G+T+ + + + L SI+V EP + ++ T
Sbjct: 361 NHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK-- 418
Query: 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWR 462
L L R E + RV+ I+SG G LH+ I+++ + ++
Sbjct: 419 -------ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK 471
Query: 463 YQKNIWGLWLNFLAK-----DAGRCLICRELGRKEQHSLSIKFQPV 503
N+ + + D I + GR + + IK +P+
Sbjct: 472 VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPL 517
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE--RIMDSNDLERERGITILSKNTS 146
+RNI I AH+D GKTT + +L V E MD + ERERGITI + T+
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA 206
+ D +INIIDTPGH DF EVER + +++G ++V DS +G PQ+ V ++A ++
Sbjct: 72 CFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 207 VVVVVNKIDRPSA 219
+ NK+D+ A
Sbjct: 132 RIAFANKMDKTGA 144
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 18/226 (7%)
Query: 284 EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+ +G L LA + D + GR+ R+++G L G V T R R++ L
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTK---GRKERVARLLRMHA 360
Query: 344 FSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKP-LPSIKVEEPTVKMSFSINTSPF 402
R E + AGD+ AV G+ + G+T+ + + + L SI+V EP + ++ T
Sbjct: 361 NHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK-- 418
Query: 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWR 462
L L R E + RV+ I+SG G LH+ I+++ + ++
Sbjct: 419 -------ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK 471
Query: 463 YQKNIWGLWLNFLAK-----DAGRCLICRELGRKEQHSLSIKFQPV 503
N+ + + D I + GR + + IK +P+
Sbjct: 472 VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPL 517
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE--RIMDSNDLERERGITILSKNTS 146
+RNI I AH+D GKTT + +L V E MD + ERERGITI + T+
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA 206
+ D +INIIDTPGH DF EVER + +++G ++V DS +G PQ+ V ++A ++
Sbjct: 72 CFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 207 VVVVVNKIDRPSA 219
+ NK+D+ A
Sbjct: 132 RIAFANKMDKTGA 144
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 18/226 (7%)
Query: 284 EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+ +G L LA + D + GR+ R+++G L G V T R R++ L
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTK---GRKERVARLLRMHA 360
Query: 344 FSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKP-LPSIKVEEPTVKMSFSINTSPF 402
R E + AGD+ AV G+ + G+T+ + + + L SI+V EP + ++ T
Sbjct: 361 NHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK-- 418
Query: 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWR 462
L L R E + RV+ I+SG G LH+ I+++ + ++
Sbjct: 419 -------ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK 471
Query: 463 YQKNIWGLWLNFLAK-----DAGRCLICRELGRKEQHSLSIKFQPV 503
N+ + + D I + GR + + IK +P+
Sbjct: 472 VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPL 517
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE--RIMDSNDLERERGITILSKNTS 146
+RNI I AH+D GKTT + +L V E MD + ERERGITI + T+
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA 206
+ D +INIIDTPGH DF EVER + +++G ++V DS +G PQ+ V ++A ++
Sbjct: 72 CFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 207 VVVVVNKIDRPSA 219
+ NK+D+ A
Sbjct: 132 RIAFANKMDKTGA 144
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 18/226 (7%)
Query: 284 EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+ +G L LA + D + GR+ R+++G L G V T R R++ L
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTK---GRKERVARLLRMHA 360
Query: 344 FSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKP-LPSIKVEEPTVKMSFSINTSPF 402
R E + AGD+ AV G+ + G+T+ + + + L SI+V EP + ++ T
Sbjct: 361 NHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK-- 418
Query: 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWR 462
L L R E + RV+ I+SG G LH+ I+++ + ++
Sbjct: 419 -------ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK 471
Query: 463 YQKNIWGLWLNFLAK-----DAGRCLICRELGRKEQHSLSIKFQPV 503
N+ + + D I + GR + + IK +P+
Sbjct: 472 VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPL 517
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE--RIMDSNDLERERGITILSKNTS 146
+RNI I AH+D GKTT + +L V E MD + ERERGITI + T+
Sbjct: 12 LRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA 206
+ D +INIIDTPGH DF EVER + +++G ++V DS +G PQ+ V ++A ++
Sbjct: 72 CFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 207 VVVVVNKIDRPSA 219
+ NK+D+ A
Sbjct: 132 RIAFANKMDKTGA 144
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 18/226 (7%)
Query: 284 EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+ +G L LA + D + GR+ R+++G L G V T R R++ L
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTK---GRKERVARLLRMHA 360
Query: 344 FSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKP-LPSIKVEEPTVKMSFSINTSPF 402
R E + AGD+ AV G+ + G+T+ + + + L SI+V EP + ++ T
Sbjct: 361 NHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK-- 418
Query: 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWR 462
L L R E + RV+ I+SG G LH+ I+++ + ++
Sbjct: 419 -------ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK 471
Query: 463 YQKNIWGLWLNFLAK-----DAGRCLICRELGRKEQHSLSIKFQPV 503
N+ + + D I + GR + + IK +P+
Sbjct: 472 VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPL 517
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE--RIMDSNDLERERGITILSKNTS 146
+RNI I AH+D GKTT + +L V E MD + ERERGITI + T+
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA 206
+ D +INIID PGH DF EVER + +++G ++V DS +G PQ+ V ++A ++
Sbjct: 72 CFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 207 VVVVVNKIDRPSA 219
+ NK+D+ A
Sbjct: 132 RIAFANKMDKTGA 144
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 18/226 (7%)
Query: 284 EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+ +G L LA + D + GR+ R+++G L G V T R R++ L
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTK---GRKERVARLLRMHA 360
Query: 344 FSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKP-LPSIKVEEPTVKMSFSINTSPF 402
R E + AGD+ AV G+ + G+T+ + + + L SI+V EP + ++ T
Sbjct: 361 NHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK-- 418
Query: 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWR 462
L L R E + RV+ I+SG G LH+ I+++ + ++
Sbjct: 419 -------ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK 471
Query: 463 YQKNIWGLWLNFLAK-----DAGRCLICRELGRKEQHSLSIKFQPV 503
N+ + + D I + GR + + IK +P+
Sbjct: 472 VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPL 517
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE--RIMDSNDLERERGITILSKNTS 146
+RNI I AH+D GKTT + +L V E MD + ERERGITI + T+
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA 206
+ D +INIID PGH DF EVER + +++G ++V DS +G PQ+ V ++A ++
Sbjct: 72 CFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 207 VVVVVNKIDRPSA 219
+ NK+D+ A
Sbjct: 132 RIAFANKMDKTGA 144
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 18/226 (7%)
Query: 284 EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+ +G L LA + D + GR+ R+++G L G V T R R++ L
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT---KGRKERVARLLRMHA 360
Query: 344 FSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKP-LPSIKVEEPTVKMSFSINTSPF 402
R E + AGD+ AV G+ + G+T+ + + + L SI+V EP + ++ T
Sbjct: 361 NHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK-- 418
Query: 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWR 462
L L R E + V+ + I+SG G L + I+++ + ++
Sbjct: 419 -------ADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREFK 471
Query: 463 YQKNIWGLWLNFLAK-----DAGRCLICRELGRKEQHSLSIKFQPV 503
N+ + + D I + GR + + IK +P+
Sbjct: 472 VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPL 517
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE--RIMDSNDLERERGITILSKNTS 146
+RNI I AH+D GKTT + +L V E MD + ERERGITI + T+
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA 206
+ D +INIID PGH DF EVER + +++G ++V DS +G PQ+ V ++A ++
Sbjct: 72 CFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 207 VVVVVNKIDRPSA 219
+ NK+D+ A
Sbjct: 132 RIAFANKMDKTGA 144
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 18/226 (7%)
Query: 284 EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+ +G L LA + D + GR+ R+++G L G V T R R++ L
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTK---GRKERVARLLRMHA 360
Query: 344 FSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKP-LPSIKVEEPTVKMSFSINTSPF 402
R E + AGD+ AV G+ + G+T+ + + + L SI+V EP + ++ T
Sbjct: 361 NHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK-- 418
Query: 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWR 462
L L R E + RV+ I+SG G LH+ I+++ + ++
Sbjct: 419 -------ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK 471
Query: 463 YQKNIWGLWLNFLAK-----DAGRCLICRELGRKEQHSLSIKFQPV 503
N+ + + D I + GR + + IK +P+
Sbjct: 472 VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPL 517
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 9/166 (5%)
Query: 90 RNIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVK-ERIMDSNDLERERGITILSKNTSI 147
RNI IIAH+D GKTT + +L ++ + +T + MD + E++RGITI S T+
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 148 TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV 207
+ ++NIIDTPGH DF EVER L +++G + V+D+ G PQT V ++A +G
Sbjct: 71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 208 VVVVNKIDRPSARPDYVINSTFELFIELNATDEQC------DFQAI 247
+V VNK+D+ A +Y + ST ++ NA Q +F+AI
Sbjct: 131 IVFVNKMDKLGANFEYSV-STLHDRLQANAAPIQLPIGAEDEFEAI 175
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 292 LATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEI 351
LA + D + G++ R+++G + G V+ T + R+ L SR +
Sbjct: 312 LAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK---GKRERVGRLLQMHANSRQEIDT 368
Query: 352 VAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVT 411
V +GDI A G+ D G+T+ + + L S++ EP + +S
Sbjct: 369 VYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPK------------- 415
Query: 412 SRNLRDRLYREL----ERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNI 467
S+ +D++ + L E + E I+ G G LH+ IL++ + + + N+
Sbjct: 416 SKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNV 475
Query: 468 WGLWLN----FLAKDAGRCLICRELGRKEQHS-LSIKFQP 502
++ F + + R+ G + Q+ + I+F P
Sbjct: 476 GAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTP 515
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 9/166 (5%)
Query: 90 RNIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVK-ERIMDSNDLERERGITILSKNTSI 147
RNI I+AH+D GKTT + +L ++ + +T + MD + E++RGITI S T+
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 148 TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV 207
+ ++NIIDTPGH DF EVER L +++G + V+D+ G PQT V ++A +G
Sbjct: 71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 208 VVVVNKIDRPSARPDYVINSTFELFIELNATDEQC------DFQAI 247
+V VNK+D+ A +Y + ST ++ NA Q +F+AI
Sbjct: 131 IVFVNKMDKLGANFEYSV-STLHDRLQANAAPIQLPIGAEDEFEAI 175
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 292 LATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEI 351
LA + D + G++ R+++G + G V+ T + R+ L SR +
Sbjct: 312 LAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK---GKRERVGRLLQMHANSRQEIDT 368
Query: 352 VAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVT 411
V +GDI A G+ D G+T+ + + L S++ EP + +S
Sbjct: 369 VYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPK------------- 415
Query: 412 SRNLRDRLYREL----ERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNI 467
S+ +D++ + L E + E I+ G G LH+ IL++ + + + N+
Sbjct: 416 SKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNV 475
Query: 468 WGLWLN----FLAKDAGRCLICRELGRKEQHS-LSIKFQP 502
++ F + + R+ G + Q+ + I+F P
Sbjct: 476 GAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTP 515
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 90 RNIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVK-ERIMDSNDLERERGITILSKNTSI 147
RNI IIAH+D GKTT + +L ++ + +T + MD + E++RGITI S T+
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 148 TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV 207
+ ++NIIDTPGH D EVER L +++G + V+D+ G PQT V ++A +G
Sbjct: 71 AWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 208 VVVVNKIDRPSARPDYVINSTFELFIELNATDEQC------DFQAI 247
+V VNK+D+ A +Y + ST ++ NA Q +F+AI
Sbjct: 131 IVFVNKMDKLGANFEYSV-STLHDRLQANAAPIQLPIGAEDEFEAI 175
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 292 LATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEI 351
LA + D + G++ R+++G + G V+ T + R+ L SR +
Sbjct: 312 LAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK---GKRERVGRLLQMHANSRQEIDT 368
Query: 352 VAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVT 411
V +GDI A G+ D G+T+ + + L S++ EP + +S
Sbjct: 369 VYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPK------------- 415
Query: 412 SRNLRDRLYREL----ERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNI 467
S+ +D++ + L E + E I+ G G LH+ IL++ + + + N+
Sbjct: 416 SKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNV 475
Query: 468 WGLWLN----FLAKDAGRCLICRELGRKEQHS-LSIKFQP 502
++ F + + R+ G + Q+ + I+F P
Sbjct: 476 GAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTP 515
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 90 RNIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVK-ERIMDSNDLERERGITILSKNTSI 147
RNI I+AH+D GKTT + +L ++ + +T + MD + E++RGITI S T+
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 148 TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV 207
+ ++NIIDTPGH D EVER L +++G + V+D+ G PQT V ++A +G
Sbjct: 71 AWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 208 VVVVNKIDRPSARPDYVINSTFELFIELNATDEQC------DFQAI 247
+V VNK+D+ A +Y + ST ++ NA Q +F+AI
Sbjct: 131 IVFVNKMDKLGANFEYSV-STLHDRLQANAAPIQLPIGAEDEFEAI 175
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 292 LATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEI 351
LA + D + G++ R+++G + G V+ T + R+ L SR +
Sbjct: 312 LAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK---GKRERVGRLLQMHANSRQEIDT 368
Query: 352 VAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVT 411
V +GDI A G+ D G+T+ + + L S++ EP + +S
Sbjct: 369 VYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPK------------- 415
Query: 412 SRNLRDRLYREL----ERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNI 467
S+ +D++ + L E + E I+ G G LH+ IL++ + + + N+
Sbjct: 416 SKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNV 475
Query: 468 WGLWLN----FLAKDAGRCLICRELGRKEQHS-LSIKFQP 502
++ F + + R+ G + Q+ + I+F P
Sbjct: 476 GAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTP 515
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 81/149 (54%), Gaps = 15/149 (10%)
Query: 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE-----RIMDSNDLERERGITILSKN 144
RNI I AH+D GKTT + +L V N + E MD + E+ERGITI S
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGV---NHKIGEVHDGAATMDWMEQEQERGITITSAA 67
Query: 145 TSI-------TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVL 197
T+ Y +INIIDTPGH DF EVER + +++G ++V +V G PQ+ V
Sbjct: 68 TTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127
Query: 198 KKALEFGHAVVVVVNKIDRPSARPDYVIN 226
++A ++ + VNK+DR A V+N
Sbjct: 128 RQANKYKVPRIAFVNKMDRMGANFLKVVN 156
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 12/182 (6%)
Query: 286 DGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFS 345
D LA + D G + R+++GV+ G V R+ RI ++ +
Sbjct: 314 DEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANK--- 370
Query: 346 RVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGR 405
R + V AGDI A G+ D+ G+T+ D + L ++ EP + ++ T
Sbjct: 371 REEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTK----- 425
Query: 406 EGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQK 465
+ L R + + + RV E ++ I++G G LH+ I+++ + + +
Sbjct: 426 ----ADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEA 481
Query: 466 NI 467
N+
Sbjct: 482 NV 483
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 81/149 (54%), Gaps = 15/149 (10%)
Query: 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE-----RIMDSNDLERERGITILSKN 144
RNI I AH+D GKTT + +L V N + E MD + E+ERGITI S
Sbjct: 10 RNIGISAHIDAGKTTTTERILFYTGV---NHKIGEVHDGAATMDWMEQEQERGITITSAA 66
Query: 145 TSI-------TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVL 197
T+ Y +INIIDTPGH DF EVER + +++G ++V +V G PQ+ V
Sbjct: 67 TTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 126
Query: 198 KKALEFGHAVVVVVNKIDRPSARPDYVIN 226
++A ++ + VNK+DR A V+N
Sbjct: 127 RQANKYKVPRIAFVNKMDRMGANFLKVVN 155
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 12/182 (6%)
Query: 286 DGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFS 345
D LA + D G + R+++GV+ G V R+ RI ++ +
Sbjct: 313 DEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANK--- 369
Query: 346 RVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGR 405
R + V AGDI A G+ D+ G+T+ D + L ++ EP + ++ T
Sbjct: 370 REEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTK----- 424
Query: 406 EGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQK 465
+ L R + + + RV E ++ I++G G LH+ I+++ + + +
Sbjct: 425 ----ADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEA 480
Query: 466 NI 467
N+
Sbjct: 481 NV 482
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 9/139 (6%)
Query: 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL--ERERGITILS----- 142
RNI I AHVD GKTT + +L V V + ++ + E+ERGITI S
Sbjct: 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTT 73
Query: 143 --KNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKA 200
K + Y++ ++N+IDTPGH DF EVER L +++G ++V G PQ+ V ++A
Sbjct: 74 FWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA 133
Query: 201 LEFGHAVVVVVNKIDRPSA 219
++G +V VNK+DR A
Sbjct: 134 NKYGVPRIVYVNKMDRQGA 152
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 12/176 (6%)
Query: 292 LATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEI 351
LA + D G + R+++GVL G V R R+ ++ + R +
Sbjct: 323 LAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQ---REEIKE 379
Query: 352 VAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVT 411
V AGDI A+ G+ D+ G+T+ L + EP + ++ T
Sbjct: 380 VRAGDIAALIGMKDVTTGDTLCSIEKPIILERMDFPEPVISVAVEPKTK---------AD 430
Query: 412 SRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNI 467
+ L + + + + RV E + I+SG G LH+ I+++ + + + NI
Sbjct: 431 QEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANI 486
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 36/287 (12%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGI 138
K +R N+ I HVDHGKTTL A+ A N VK+ +D ER RGI
Sbjct: 2 KGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQ 192
TI + + + +D PGH+D+ I NM+ +G +LVV + +GPMPQ
Sbjct: 62 TINTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQ 115
Query: 193 TRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYA 249
TR + A + G +VV +NK+ D V + +E+ D Q +F
Sbjct: 116 TREHILLARQVGVPYIVVFMNKV-------DMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168
Query: 250 SGIQGKAGLSPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296
I+G A L+ + + D + L ++I IP P + D M ++
Sbjct: 169 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+G +A GR+ G ++ G EV + R ++ + ++ K
Sbjct: 229 FTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRK 275
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 36/287 (12%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGI 138
K +R N+ I HVDHGKTTL A+ A N VK+ +D ER RGI
Sbjct: 2 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQ 192
TI + + + +D PGH+D+ I NM+ +G +LVV + +GPMPQ
Sbjct: 62 TINTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQ 115
Query: 193 TRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYA 249
TR + A + G +VV +NK+ D V + +E+ D Q +F
Sbjct: 116 TREHILLARQVGVPYIVVFMNKV-------DMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168
Query: 250 SGIQGKAGLSPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296
I+G A L+ + + D + L ++I IP P + D M ++
Sbjct: 169 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+G +A GR+ G ++ G EV + R ++ + ++ K
Sbjct: 229 FTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRK 275
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 36/287 (12%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGI 138
K +R N+ I HVDHGKTTL A+ A N VK+ +D ER RGI
Sbjct: 2 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQ 192
TI + + + +D PGH+D+ I NM+ +G +LVV + +GPMPQ
Sbjct: 62 TINTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQ 115
Query: 193 TRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYA 249
TR + A + G +VV +NK+ D V + +E+ D Q +F
Sbjct: 116 TREHILLARQVGVPYIVVFMNKV-------DMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168
Query: 250 SGIQGKAGLSPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296
I+G A L+ + + D + L ++I IP P + D M ++
Sbjct: 169 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+G +A GR+ G ++ G EV + R ++ + ++ K
Sbjct: 229 FTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRK 275
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 36/287 (12%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGI 138
K +R N+ I HVDHGKTTL A+ A N VK+ +D ER RGI
Sbjct: 3 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGI 62
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQ 192
TI + + + +D PGH+D+ I NM+ +G +LVV + +GPMPQ
Sbjct: 63 TINTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQ 116
Query: 193 TRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYA 249
TR + A + G +VV +NK+ D V + +E+ D Q +F
Sbjct: 117 TREHILLARQVGVPYIVVFMNKV-------DMVDDPELLDLVEMEVRDLLNQYEFPGDEV 169
Query: 250 SGIQGKAGLSPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296
I+G A L+ + + D + L ++I IP P + D M ++
Sbjct: 170 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 229
Query: 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+G +A GR+ G ++ G EV + R ++ + ++ K
Sbjct: 230 FTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRK 276
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 36/287 (12%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGI 138
K +R N+ I HVDHGKTTL A+ A N VK+ +D ER RGI
Sbjct: 2 KGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQ 192
TI + + + +D PGH+D+ I NM+ +G +LVV + +GPMPQ
Sbjct: 62 TINTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQ 115
Query: 193 TRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYA 249
TR + A + G +VV +NK+ D V + +E+ D Q +F
Sbjct: 116 TREHILLARQVGVPYIVVFMNKV-------DMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168
Query: 250 SGIQGKAGLSPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296
I+G A L+ + + D + L ++I IP P + D M ++
Sbjct: 169 PVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+G +A GR+ G ++ G EV + R ++ + ++ K
Sbjct: 229 FTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRK 275
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER------IMDSNDLERERGITILSKN 144
AII+H D GKTTL + +L + +VK R D +ERERGI++ +
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 145 TSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG 204
Y D +N++DTPGH DF + R+L V+ L+V+D+ +G QTR ++
Sbjct: 93 MQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA 152
Query: 205 HAVVVVVNKIDRPSARP 221
V+ VNK+DR + P
Sbjct: 153 TPVMTFVNKMDREALHP 169
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 36/287 (12%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGI 138
K +R N+ I HVDHGKTTL A+ A N VK+ +D ER RGI
Sbjct: 2 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQ 192
TI + + + +D PGH+D+ I NM+ +G +LVV + +GPMPQ
Sbjct: 62 TINTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQ 115
Query: 193 TRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYA 249
TR + A + G +VV +NK+ D V + +E+ D Q +F
Sbjct: 116 TREHILLARQVGVPYIVVFMNKV-------DMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168
Query: 250 SGIQGKAGLSPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296
I+G A L+ + + D + L ++I IP P + D M ++
Sbjct: 169 PVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+G +A GR+ G ++ G EV + R ++ + ++ K
Sbjct: 229 FTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRK 275
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 124/287 (43%), Gaps = 36/287 (12%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGI 138
K +R N+ I HVDHGKTTL A+ N VK+ +D ER RGI
Sbjct: 2 KGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQ 192
TI + + + +D PGH+D+ I NM+ +G +LVV + +GPMPQ
Sbjct: 62 TINTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQ 115
Query: 193 TRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYA 249
TR + A + G +VV +NK+ D V + +E+ D Q +F
Sbjct: 116 TREHILLARQVGVPYIVVFMNKV-------DMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168
Query: 250 SGIQGKAGLSPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296
I+G A L+ + + D + L ++I IP P + D M ++
Sbjct: 169 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+G +A GR+ G ++ G EV + R ++ + ++ K
Sbjct: 229 FTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRK 275
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 124/287 (43%), Gaps = 36/287 (12%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGI 138
K +R N+ I HVDHGKTTL A+ N VK+ +D ER RGI
Sbjct: 2 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQ 192
TI + + + +D PGH+D+ I NM+ +G +LVV + +GPMPQ
Sbjct: 62 TINTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQ 115
Query: 193 TRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYA 249
TR + A + G +VV +NK+ D V + +E+ D Q +F
Sbjct: 116 TREHILLARQVGVPYIVVFMNKV-------DMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168
Query: 250 SGIQGKAGLSPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296
I+G A L+ + + D + L ++I IP P + D M ++
Sbjct: 169 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+G +A GR+ G ++ G EV + R ++ + ++ K
Sbjct: 229 FTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRK 275
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 124/287 (43%), Gaps = 36/287 (12%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGI 138
K +R N+ I HVDHGKTTL A+ N VK+ +D ER RGI
Sbjct: 2 KGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQ 192
TI + + + +D PGH+D+ I NM+ +G +LVV + +GPMPQ
Sbjct: 62 TINTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQ 115
Query: 193 TRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYA 249
TR + A + G +VV +NK+ D V + +E+ D Q +F
Sbjct: 116 TREHILLARQVGVPYIVVFMNKV-------DMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168
Query: 250 SGIQGKAGLSPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296
I+G A L+ + + D + L ++I IP P + D M ++
Sbjct: 169 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+G +A GR+ G ++ G EV + R ++ + ++ K
Sbjct: 229 FTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRK 275
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 124/287 (43%), Gaps = 36/287 (12%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGI 138
K +R N+ I HVDHGKTTL A+ N VK+ +D ER RGI
Sbjct: 2 KGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQ 192
TI + + + +D PGH+D+ I NM+ +G +LVV + +GPMPQ
Sbjct: 62 TINTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQ 115
Query: 193 TRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYA 249
TR + A + G +VV +NK+ D V + +E+ D Q +F
Sbjct: 116 TREHILLARQVGVPYIVVFMNKV-------DMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168
Query: 250 SGIQGKAGLSPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296
I+G A L+ + + D + L ++I IP P + D M ++
Sbjct: 169 PVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+G +A GR+ G ++ G EV + R ++ + ++ K
Sbjct: 229 FTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRK 275
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Query: 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER------IMDSNDLERERGITILSK 143
R AII+H D GKTTL + +L + T+K R D +LE++RGI++ +
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 144 NTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF 203
Y D IN++DTPGH+DF + R L V+ L V+D+ +G P+T L +
Sbjct: 74 VXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRT-IKLXEVCRL 132
Query: 204 GHA-VVVVVNKIDRPSARP 221
H + +NK DR RP
Sbjct: 133 RHTPIXTFINKXDR-DTRP 150
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 18/150 (12%)
Query: 81 SRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITI 140
S ++ R + + I+ HVDHGKTTL+DA ++ +KV + GIT
Sbjct: 2 SHMVERPPV--VTIMGHVDHGKTTLLDA-IRHSKVTE---------------QEAGGITQ 43
Query: 141 LSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKA 200
+T ND KI +DTPGH F R + + V+LVV + +G MPQT + A
Sbjct: 44 HIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHA 103
Query: 201 LEFGHAVVVVVNKIDRPSARPDYVINSTFE 230
++V +NK+D+P A PD V+ E
Sbjct: 104 KAANVPIIVAINKMDKPEANPDRVMQELME 133
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER------IMDSNDLERERGITILSK 143
R AII+H D GKTT+ + +L + + TVK R D ++E++RGI+I +
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 144 NTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF 203
Y+D +N++DTPGH DF + R L V+ L+V+D+ +G +TR +++
Sbjct: 74 VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR 133
Query: 204 GHAVVVVVNKIDRPSARP 221
++ +NK+DR P
Sbjct: 134 DTPILTFMNKLDRDIRDP 151
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 300 EHKGRIAIGRLHAGVLRKGMEVR-VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDIC 358
+H+ R+A R+ +G KGM++R V T++D IS+ + R E GDI
Sbjct: 310 KHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVV----ISDALTFMAGDRSHVEEAYPGDIL 365
Query: 359 AVCGIDDIQIGETIAD----KVSGKP 380
+ IQIG+T K +G P
Sbjct: 366 GLHNHGTIQIGDTFTQGEMMKFTGIP 391
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER------IMDSNDLERERGITILSK 143
R AII+H D GKTT+ + +L + + TVK R D ++E++RGI+I +
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 144 NTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF 203
Y+D +N++DTPGH DF + R L V+ L+V+D+ +G +TR +++
Sbjct: 74 VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR 133
Query: 204 GHAVVVVVNKIDRPSARP 221
++ +NK+DR P
Sbjct: 134 DTPILTFMNKLDRDIRDP 151
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 300 EHKGRIAIGRLHAGVLRKGMEVR-VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDIC 358
+H+ R+A R+ +G KGM++R V T++D IS+ + R E GDI
Sbjct: 310 KHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVV----ISDALTFMAGDRSHVEEAYPGDIL 365
Query: 359 AVCGIDDIQIGETIAD----KVSGKP 380
+ IQIG+T K +G P
Sbjct: 366 GLHNHGTIQIGDTFTQGEMMKFTGIP 391
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 110/262 (41%), Gaps = 5/262 (1%)
Query: 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN 150
N+ I HVDHGKTTL A+ K + K +D+ ER RGITI + + +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 64
Query: 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG-HAVVV 209
D PGH+D+ + ++G +LVV + +GPMPQTR L A + G VVV
Sbjct: 65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVV 124
Query: 210 VVNKID--RPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDL 267
VNK D + S + V EL E E+ I S + P+ +
Sbjct: 125 YVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPI--IVGSALCALEQRDPELGLKSV 182
Query: 268 GPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE 327
L +++ IP P + + + ++ +G + G L G+L+KG E
Sbjct: 183 QKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHS 242
Query: 328 DSCRYARISELFVYEKFSRVSA 349
+ R ++ R A
Sbjct: 243 KNIRTVVTGIEMFHKSLDRAEA 264
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 107/248 (43%), Gaps = 5/248 (2%)
Query: 76 AAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERE 135
A E K +R N+ I HVDHGKTTL A+ K + K +D+ ER
Sbjct: 1 AVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERA 60
Query: 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRF 195
RGITI + + + D PGH+D+ ++G +LVV + +GP PQTR
Sbjct: 61 RGITINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTRE 120
Query: 196 VLKKALEFG-HAVVVVVNKID--RPSARPDYVINSTFELFIELNATDEQCDFQAIYASGI 252
L A + G VVV VNK D + S + V EL E E+ I S +
Sbjct: 121 HLLLARQIGVEHVVVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEETPI--IVGSAL 178
Query: 253 QGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHA 312
P+ + L +++ IP P + + + ++ +G + G L
Sbjct: 179 CALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLER 238
Query: 313 GVLRKGME 320
G+L+KG E
Sbjct: 239 GILKKGDE 246
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 26/131 (19%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT 148
+RNI I AH+D GKTT + +L RI T+
Sbjct: 7 LRNIGIAAHIDAGKTTTTERILYYTG----------RI----------------AVTTCF 40
Query: 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV 208
+ D +INIIDTPGH DF EVER + +++G ++V DS +G PQ+ V ++A ++ +
Sbjct: 41 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 100
Query: 209 VVVNKIDRPSA 219
NK+D+ A
Sbjct: 101 AFANKMDKTGA 111
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 18/226 (7%)
Query: 284 EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343
+ +G L LA + D + GR+ R+++G L G V T R R++ L
Sbjct: 271 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTK---GRKERVARLLRMHA 327
Query: 344 FSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKP-LPSIKVEEPTVKMSFSINTSPF 402
R E + AGD+ AV G+ + G+T+ + + + L SI+V EP + ++ T
Sbjct: 328 NHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK-- 385
Query: 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWR 462
L L R E + RV+ I+SG G LH+ I+++ + ++
Sbjct: 386 -------ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK 438
Query: 463 YQKNIWGLWLNFLAK-----DAGRCLICRELGRKEQHSLSIKFQPV 503
N+ + + D I + GR + + IK +P+
Sbjct: 439 VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPL 484
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 25/227 (11%)
Query: 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND 151
+ I+ HVDHGKTTL+D + R Q M++ + + G ++S +
Sbjct: 7 VTIMGHVDHGKTTLLDKL-------RKTQVAA---MEAGGITQHIGAFLVSLPSG----- 51
Query: 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVV 211
KI +DTPGH+ F R + + V+LVV + +G M QT ++ A + +V+ +
Sbjct: 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAI 111
Query: 212 NKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLF 271
NK D+ A P+ V L ++ D D QA++ S + G+ ++ L +
Sbjct: 112 NKCDKAEADPEKVKKEL--LAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEML 169
Query: 272 ESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKG 318
E ++ P GA++ D+ +G + + G LRKG
Sbjct: 170 E--LKADP------TGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKG 208
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 111/266 (41%), Gaps = 43/266 (16%)
Query: 91 NIAIIAHVDHGKTTLVDAML---------------KQAKVFRDNQTVK-ERIMDSNDLER 134
N+ +I HVDHGK+TLV +L +QAK R ++ K I+D ER
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKS-RGKESFKFAWILDKMKEER 66
Query: 135 ERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEG------VLLVVDSVEG 188
ERGITI IID PGH DF + NM+ G +LVV + +G
Sbjct: 67 ERGITIDLTFMKFETKKYVFTIIDAPGHRDF------VKNMITGASQADAAILVVSARKG 120
Query: 189 PMP-------QTRFVLKKALEFG-HAVVVVVNKIDRPSA-----RPDYVINSTFELFIEL 235
QTR L A G ++V VNK+D P R ++V++ + L
Sbjct: 121 EFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGL 180
Query: 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATN 295
++ F + A SP N+ GP + + P D L++ N
Sbjct: 181 GYQVDKIPFIPVSAWKGDNLIERSP-NMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQN 239
Query: 296 LEYDEHKGRIAIGRLHAGVLRKGMEV 321
+ G + +GR+ GVLR G +V
Sbjct: 240 VYSIPGAGTVPVGRVETGVLRVGDKV 265
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 111/266 (41%), Gaps = 43/266 (16%)
Query: 91 NIAIIAHVDHGKTTLVDAML---------------KQAKVFRDNQTVK-ERIMDSNDLER 134
N+ +I HVDHGK+TLV +L +QAK R ++ K I+D ER
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKS-RGKESFKFAWILDKMKEER 69
Query: 135 ERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEG------VLLVVDSVEG 188
ERGITI IID PGH DF + NM+ G +LVV + +G
Sbjct: 70 ERGITIDLTFMKFETKKYVFTIIDAPGHRDF------VKNMITGASQADAAILVVSARKG 123
Query: 189 PMP-------QTRFVLKKALEFG-HAVVVVVNKIDRPSA-----RPDYVINSTFELFIEL 235
QTR L A G ++V VNK+D P R ++V++ + L
Sbjct: 124 EFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGL 183
Query: 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATN 295
++ F + A SP N+ GP + + P D L++ N
Sbjct: 184 GYQVDKIPFIPVSAWKGDNLIERSP-NMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQN 242
Query: 296 LEYDEHKGRIAIGRLHAGVLRKGMEV 321
+ G + +GR+ GVLR G +V
Sbjct: 243 VYSIPGAGTVPVGRVETGVLRVGDKV 268
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 73 AETAAEKKSRLMRRSDIR------NIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVKER 125
AE AA K M + N+ I HVDHGKTTL A+ AK + ++
Sbjct: 274 AEVAAMSKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ 333
Query: 126 IMDSNDLERERGITILSKNTSITYNDTKINI---IDTPGHSDFGGEVERILNMVEGVLLV 182
I D+ E+ RGITI NTS DT +D PGH+D+ + ++G +LV
Sbjct: 334 I-DNAPEEKARGITI---NTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILV 389
Query: 183 VDSVEGPMPQTRFVLKKALEFG-HAVVVVVNKID 215
V + +GPMPQTR + + G ++V +NK D
Sbjct: 390 VAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 423
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGITILSKNTSITY 149
N+ I HVDHGKTTL A+ A N VK+ +D ER RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARGITINTAHVEYET 72
Query: 150 NDTKINIIDTPGHSDFGGEVERILNMV------EGVLLVVDSVEGPMPQTRFVLKKALEF 203
+ +D GH+D+ I NM+ +G +LVV + +G M QTR + A +
Sbjct: 73 AKRHYSHVDCRGHADY------IKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQV 126
Query: 204 G-HAVVVVVNKIDRPSARPDYVINSTFEL--FIELNATD--EQCDFQAIYASGIQGKAGL 258
G +VV +NK+D R EL +E+ D Q +F+ I+G A L
Sbjct: 127 GVRYIVVFMNKVDMVDDR---------ELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALL 177
Query: 259 SPDNL-------------ADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRI 305
+ + + D + L ++I I + D M ++ +G +
Sbjct: 178 ALEEMHKNRKTKRGENEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTV 237
Query: 306 AIGRLHAGVLRKGMEVRVC 324
A GR+ G ++ G EV +
Sbjct: 238 ATGRIERGKVKVGDEVEIV 256
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVKERIMDSNDLERERGI 138
K + R N+ I HVDHGKTTL A+ AK + ++I D+ E+ RGI
Sbjct: 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-DNAPEEKARGI 61
Query: 139 TILSKNTSITYNDTKINI---IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRF 195
TI NTS DT +D PGH+D+ + ++G +LVV + +GPMPQTR
Sbjct: 62 TI---NTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 118
Query: 196 VLKKALEFG-HAVVVVVNKID 215
+ + G ++V +NK D
Sbjct: 119 HILLGRQVGVPYIIVFLNKCD 139
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVKERIMDSNDLERERGI 138
K + R N+ I HVDHGKTTL A+ AK + ++I D+ E+ RGI
Sbjct: 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-DNAPEEKARGI 61
Query: 139 TILSKNTSITYNDTKINI---IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRF 195
TI NTS DT +D PGH+D+ + ++G +LVV + +GPMPQTR
Sbjct: 62 TI---NTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 118
Query: 196 VLKKALEFG-HAVVVVVNKID 215
+ + G ++V +NK D
Sbjct: 119 HILLGRQVGVPYIIVFLNKCD 139
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVKERIMDSNDLERERGI 138
K + R N+ I HVDHGKTTL A+ AK + ++I D+ E+ RGI
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-DNAPEEKARGI 60
Query: 139 TILSKNTSITYNDTKINI---IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRF 195
TI NTS DT +D PGH+D+ + ++G +LVV + +GPMPQTR
Sbjct: 61 TI---NTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 117
Query: 196 VLKKALEFG-HAVVVVVNKID 215
+ + G ++V +NK D
Sbjct: 118 HILLGRQVGVPYIIVFLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVKERIMDSNDLERERGI 138
K + R N+ I HVDHGKTTL A+ AK + ++I D+ E+ RGI
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-DNAPEEKARGI 60
Query: 139 TILSKNTSITYNDTKINI---IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRF 195
TI NTS DT +D PGH+D+ + ++G +LVV + +GPMPQTR
Sbjct: 61 TI---NTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 117
Query: 196 VLKKALEFG-HAVVVVVNKID 215
+ + G ++V +NK D
Sbjct: 118 HILLGRQVGVPYIIVFLNKCD 138
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVKERIMDSNDLERERGI 138
K + R N+ I HVDHGKTTL A+ AK + ++I D+ E+ RGI
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-DNAPEEKARGI 60
Query: 139 TILSKNTSITYNDTKINI---IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRF 195
TI NTS DT +D PGH+D+ + ++G +LVV + +GPMPQTR
Sbjct: 61 TI---NTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 117
Query: 196 VLKKALEFG-HAVVVVVNKID 215
+ + G ++V +NK D
Sbjct: 118 HILLGRQVGVPYIIVFLNKCD 138
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 73 AETAAEKKSRLMRRSDIR------NIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVKER 125
AE AA K M + N+ I HVDHGKTTL A+ AK + ++
Sbjct: 274 AEVAAMSKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ 333
Query: 126 IMDSNDLERERGITILSKNTSITYNDTKINI---IDTPGHSDFGGEVERILNMVEGVLLV 182
I D+ E+ RGITI NTS DT +D PGH+D+ + ++G +LV
Sbjct: 334 I-DNAPEEKARGITI---NTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILV 389
Query: 183 VDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKID 215
V + +GPMPQTR + + G ++V +NK D
Sbjct: 390 VAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 423
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 91 NIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY 149
N+ I HVDHGKTTL A+ AK + ++I D+ E+ RGITI NTS
Sbjct: 5 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-DNAPEEKARGITI---NTSHVE 60
Query: 150 NDTKINI---IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG-H 205
DT +D PGH+D+ + ++G +LVV + +GPMPQTR + + G
Sbjct: 61 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 120
Query: 206 AVVVVVNKID 215
++V +NK D
Sbjct: 121 YIIVFLNKCD 130
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 114/272 (41%), Gaps = 61/272 (22%)
Query: 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER----------------IMDSNDLER 134
N+ +I HVDHGK+TLV +L + F D +TVKE ++D ER
Sbjct: 8 NLIVIGHVDHGKSTLVGRLL-MDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEER 66
Query: 135 ERGITILSKNTSITYNDTK---INIIDTPGHSDFGGEVERILNMVEG------VLLVVD- 184
ERG+TI N + +TK IID PGH DF + NM+ G +LVV
Sbjct: 67 ERGVTI---NLTFMRFETKKYFFTIIDAPGHRDF------VKNMITGASQADAAILVVSA 117
Query: 185 ---------SVEGPMPQTR--FVLKKALEFGHAVVVVVNKIDRPSARPDY-------VIN 226
SVEG QTR +L K + ++V VNK+D P Y +++
Sbjct: 118 KKGEYEAGMSVEG---QTREHIILAKTMGLDQ-LIVAVNKMDL--TEPPYDEKRYKEIVD 171
Query: 227 STFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKD 286
+ + F + A S +N+ GP E + + P D
Sbjct: 172 QVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS-ENMKWYNGPTLEEYLDQLELPPKPVD 230
Query: 287 GALQMLATNLEYDEHKGRIAIGRLHAGVLRKG 318
L++ ++ G + +GR+ +GVL+ G
Sbjct: 231 KPLRIPIQDVYSISGVGTVPVGRVESGVLKVG 262
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 21/174 (12%)
Query: 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND 151
+ I+ HVDHGKT+L++ ++ KV + + + +E E G+
Sbjct: 7 VTIMGHVDHGKTSLLE-YIRSTKVASGEAGGITQHIGAYHVETENGM------------- 52
Query: 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVV 211
I +DTPGH+ F R + V+LVV + +G MPQT ++ A VVV V
Sbjct: 53 --ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAV 110
Query: 212 NKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLAD 265
NKID+P A PD V N + I + F + A KAG D L D
Sbjct: 111 NKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSA-----KAGTGIDELLD 159
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 9/125 (7%)
Query: 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN 150
N+ I H+DHGKTTL + + A + + +++ +S ++RGITI ++
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTEIA-----STSAHDKLPES----QKRGITIDIGFSAFKLE 71
Query: 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVV 210
+ +I ++D PGH+D V ++++ L+VVD+ EGP QT + F ++VV
Sbjct: 72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVV 131
Query: 211 VNKID 215
+ K D
Sbjct: 132 ITKSD 136
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGIT 139
K + R N+ I HVDHGKTTL A+ TV + RGIT
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAI----------TTVLAKTYGGA----ARGIT 47
Query: 140 ILSKNTSITYNDTKINI---IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFV 196
I NTS DT +D PGH+D+ + ++G +LVV + +GPMPQTR
Sbjct: 48 I---NTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 104
Query: 197 LKKALEFG-HAVVVVVNKID 215
+ + G ++V +NK D
Sbjct: 105 ILLGRQVGVPYIIVFLNKCD 124
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 128/320 (40%), Gaps = 48/320 (15%)
Query: 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN-DLERERGI-TILSKNTSITY 149
++++ HVDHGKTTL+D + A R+ + + I + ++ GI K SI
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVV 209
+ IDTPGH F +R + + +L+VD EG PQT+ L + VV
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVV 127
Query: 210 VVNKIDR------PSARP-------------DYVINSTFELFIELN-----------ATD 239
NKIDR RP + +EL +L+ TD
Sbjct: 128 AANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTD 187
Query: 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYD 299
I S I G+ P+ L +G L + +R +IE+D + ++ +
Sbjct: 188 FASQVSIIPISAITGEG--IPELLTMLMG-LAQQYLR--EQLKIEEDSPARGTILEVKEE 242
Query: 300 EHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELF----------VYEKFSRVSA 349
G ++ G+LRK + + TS+D RI L +KF +V
Sbjct: 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVIS-TRIRSLLKPRPLEEMRESRKKFQKVDE 301
Query: 350 EIVAAGDICAVCGIDDIQIG 369
+ AAG GIDD+ G
Sbjct: 302 VVAAAGIKIVAPGIDDVMAG 321
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 129/321 (40%), Gaps = 50/321 (15%)
Query: 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERE--RGI-TILSKNTSIT 148
++++ HVDHGKTTL+D + A R+ + + I + ++ + GI K SI
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHI-GATEIPXDVIEGICGDFLKKFSIR 66
Query: 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV 208
+ IDTPGH F +R + + +L+VD EG PQT+ L + V
Sbjct: 67 ETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPFV 126
Query: 209 VVVNKIDR------PSARP-------------DYVINSTFELFIELNAT-------DEQC 242
V NKIDR RP + +EL +L+ D
Sbjct: 127 VAANKIDRIHGWRVHEGRPFXETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVT 186
Query: 243 DFQA----IYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEY 298
DF + I S I G+ G+ L L L + +R +IE+D + ++
Sbjct: 187 DFASQVSIIPISAITGE-GIP--ELLTXLXGLAQQYLR--EQLKIEEDSPARGTILEVKE 241
Query: 299 DEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELF----------VYEKFSRVS 348
+ G ++ G+LRK + TS+D RI L +KF +V
Sbjct: 242 ETGLGXTIDAVIYDGILRKDDTIAXXTSKDVIS-TRIRSLLKPRPLEEXRESRKKFQKVD 300
Query: 349 AEIVAAGDICAVCGIDDIQIG 369
+ AAG GIDD+ G
Sbjct: 301 EVVAAAGIKIVAPGIDDVXAG 321
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 2/130 (1%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE--RIMDSNDLERERGITILSKNTS 146
IR +A++ H GKTTL +A+L + V+E D + T+ +
Sbjct: 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAP 68
Query: 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA 206
+ + ++ ++D PG+ DF GE+ L + L+ V + G T A G
Sbjct: 69 LLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP 128
Query: 207 VVVVVNKIDR 216
+VVV K+D+
Sbjct: 129 RMVVVTKLDK 138
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 19/193 (9%)
Query: 269 PLFESIMRCIPGPRIEKDGALQMLAT--NLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTS 326
PL E I+ +P P E+ G LA ++ D G++A RL+ G L+ G +
Sbjct: 263 PLLELILEALPSP-TERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPG-----DSL 316
Query: 327 EDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETI--ADKVSGKPLPSI 384
+ R+ L+V + E AG + V + + G + +K + +P
Sbjct: 317 QSEAGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFA 376
Query: 385 KVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSG 444
++ +P V ++ GR L + L + LE + ++++ E ++ G
Sbjct: 377 RLPDPNVPVALHPK-----GR----TDEARLGEALRKLLEEDPSLKLERQEETGELLLWG 427
Query: 445 RGTLHITILIENI 457
G LH+ E +
Sbjct: 428 HGELHLATAKERL 440
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 127/333 (38%), Gaps = 79/333 (23%)
Query: 60 QRHRRIQCSVSP--PAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAML------- 110
QR+ + P P + +A KS L S ++ HVD GK+TL+ +L
Sbjct: 6 QRYYKTTVPTKPKKPHDISAFVKSALPHLS----FVVLGHVDAGKSTLMGRLLYDLNIVN 61
Query: 111 --KQAKVFRDNQTVKER------IMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162
+ K+ R+++T+ + IMD + ERERG+T+ + + + I+D PGH
Sbjct: 62 QSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH 121
Query: 163 SDFGGEVERILNMVEGVLLVVDSVEGPMP-------QTRFVLKKALEFG-HAVVVVVNK- 213
DF ++ + +L VD QT+ + A G H +++ +NK
Sbjct: 122 RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 181
Query: 214 --IDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKA------------GLS 259
+D R + + + +++ ++ ++ I SG G+ +
Sbjct: 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPI--SGFSGEGVYKIEYTDEVRQWYN 239
Query: 260 PDNLADDL-----------------GPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHK 302
NL L P S++ IP + D AL
Sbjct: 240 GPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLAL------------- 286
Query: 303 GRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARI 335
G+L +G ++ G + + SE SC +I
Sbjct: 287 ---VSGKLESGSIQPGESLTIYPSEQSCIVDKI 316
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 129/335 (38%), Gaps = 83/335 (24%)
Query: 60 QRHRRIQCSVSP--PAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAML------- 110
QR+ + P P + +A KS L S ++ HVD GK+TL+ +L
Sbjct: 140 QRYYKTTVPTKPKKPHDISAFVKSALPHLS----FVVLGHVDAGKSTLMGRLLYDLNIVN 195
Query: 111 --KQAKVFRDNQTVKER------IMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162
+ K+ R+++T+ + IMD + ERERG+T+ + + + I+D PGH
Sbjct: 196 QSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH 255
Query: 163 SDFGGEVERILNMVEGVLLVVDSVEGPMP-------QTRFVLKKALEFG-HAVVVVVNK- 213
DF ++ + +L VD QT+ + A G H +++ +NK
Sbjct: 256 RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 315
Query: 214 --IDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKA--------------- 256
+D R + + + +++ ++ ++ I SG G+
Sbjct: 316 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPI--SGFSGEGVYKIEYTDEVRQWYN 373
Query: 257 -------------GLSPDNLA---DDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDE 300
+S +N DD P S++ IP + D AL
Sbjct: 374 GPNLMSTLENAAFKISKENEGINKDD--PFLFSVLEIIPSKKTSNDLAL----------- 420
Query: 301 HKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARI 335
G+L +G ++ G + + SE SC +I
Sbjct: 421 -----VSGKLESGSIQPGESLTIYPSEQSCIVDKI 450
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/333 (20%), Positives = 118/333 (35%), Gaps = 79/333 (23%)
Query: 60 QRHRRIQCSVSP--PAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFR 117
QR+ + P P + +A KS L S ++ HVD GK+TL +L +
Sbjct: 6 QRYYKTTVPTKPKKPHDISAFVKSALPHLS----FVVLGHVDAGKSTLXGRLLYDLNIVN 61
Query: 118 DNQTVKER---------------IMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162
+Q K + I D + ERERG+T+ + + + I+D PGH
Sbjct: 62 QSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH 121
Query: 163 SDFGGEVERILNMVEGVLLVVDSVEGPMP-------QTRFVLKKALEFG-HAVVVVVNK- 213
DF ++ + +L VD QT+ A G H +++ NK
Sbjct: 122 RDFVPNAIXGISQADXAILCVDCSTNAFESGFDLDGQTKEHXLLASSLGIHNLIIAXNKX 181
Query: 214 --IDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKA------------GLS 259
+D R + + + +++ ++ ++ I SG G+ +
Sbjct: 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPI--SGFSGEGVYKIEYTDEVRQWYN 239
Query: 260 PDNLADDL-----------------GPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHK 302
NL L P S++ IP + D AL
Sbjct: 240 GPNLXSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLAL------------- 286
Query: 303 GRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARI 335
G+L +G ++ G + + SE SC +I
Sbjct: 287 ---VSGKLESGSIQPGESLTIYPSEQSCIVDKI 316
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 26/133 (19%)
Query: 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTK 153
+I + GK++LV+AML + ER++ SN G T + +TS TYN +
Sbjct: 200 LIGRPNVGKSSLVNAMLGE-----------ERVIVSN----VAGTTRDAVDTSFTYNQQE 244
Query: 154 INIIDTPGHSDFGGEVE-----------RILNMVEGVLLVVDSVEGPMPQTRFVLKKALE 202
I+DT G G E + ++ E V +V+D EG + Q + + A E
Sbjct: 245 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE 304
Query: 203 FGHAVVVVVNKID 215
G AVV+VVNK D
Sbjct: 305 AGKAVVIVVNKWD 317
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 37/160 (23%)
Query: 91 NIAIIAHVDHGKTTL------VDAMLKQAKVFRDNQTVKER---------IMDSNDLERE 135
NI I HVD GK+TL + M+ + + + + KE +DS ERE
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGV------LLVVDSVEGP 189
+G T+ + +++D PGH + + NM+ G +LV+ + G
Sbjct: 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGY------VTNMINGASQADIGVLVISARRGE 158
Query: 190 MP-------QTR--FVLKKALEFGHAVVVVVNKIDRPSAR 220
QTR VL + H +VVV+NK+D PS +
Sbjct: 159 FEAGFERGGQTREHAVLARTQGINH-LVVVINKMDEPSVQ 197
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 120/292 (41%), Gaps = 62/292 (21%)
Query: 69 VSPPAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTL------VDAMLKQAKVFRDNQTV 122
V+PP A KK + N+ I HVD GK+T+ + M+ + + + +
Sbjct: 7 VAPPG---APKKEHV-------NVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREA 56
Query: 123 KER---------IMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERIL 173
KE+ +D+N ER++G T+ I+D PGH F +
Sbjct: 57 KEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSF------VP 110
Query: 174 NMVEG------VLLVVDSVEGPMP-------QTR--FVLKKALEFGHAVVVVVNKIDRPS 218
NM+ G +LV+ + +G QTR +L K H ++V++NK+D P+
Sbjct: 111 NMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH-LIVLINKMDDPT 169
Query: 219 ARPDYVINSTFE-------LFIELNATDEQCDFQAIYASGIQGKAGL--SPDNLADDLGP 269
N +E F++ + + D + SG+ G A L D +G
Sbjct: 170 VNWS---NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTG-ANLKEQSDFCPWYIGL 225
Query: 270 LFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEV 321
F + +P DG +++ + D G + +G+L +G + KG ++
Sbjct: 226 PFIPYLDNLPNFNRSVDGPIRLPIVDKYKD--MGTVVLGKLESGSIFKGQQL 275
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN-----DLERERGITILSKNT 145
NI ++ HVDHGKTTLV A+ +T+K ++N ++
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVTEPSCK 69
Query: 146 SITYNDT-----KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-PMPQTR--FVL 197
S +D +I+ ID PGH + +++G +LVV + E P PQTR FV
Sbjct: 70 SCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA 129
Query: 198 KKALEFGHAVVVVVNKID 215
+ + +++V NK+D
Sbjct: 130 LGIIGVKN-LIIVQNKVD 146
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 91 NIAIIAHVDHGKTTLVDAML-----KQAKVFRDNQTVKERIMDSN-----DLERERGITI 140
NI ++ HVDHGKTTLV A+ K ++ + T+K ++N ++
Sbjct: 11 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVT 70
Query: 141 LSKNTSITYNDT-----KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-PMPQTR 194
S +D +I+ ID PGH + +++G +LVV + E P PQTR
Sbjct: 71 EPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR 130
Query: 195 --FVLKKALEFGHAVVVVVNKID 215
FV + + +++V NK+D
Sbjct: 131 EHFVALGIIGVKN-LIIVQNKVD 152
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 91 NIAIIAHVDHGKTTLVDAML-----KQAKVFRDNQTVKERIMDSN-----DLERERGITI 140
NI ++ HVDHGKTTLV A+ K ++ + T+K ++N ++
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVT 69
Query: 141 LSKNTSITYNDT-----KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-PMPQTR 194
S +D +I+ ID PGH + +++G +LVV + E P PQTR
Sbjct: 70 EPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR 129
Query: 195 --FVLKKALEFGHAVVVVVNKID 215
FV + + +++V NK+D
Sbjct: 130 EHFVALGIIGVKN-LIIVQNKVD 151
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 26/133 (19%)
Query: 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTK 153
+I + GK++LV+A L + ER++ SN G T + +TS TYN +
Sbjct: 180 LIGRPNVGKSSLVNAXLGE-----------ERVIVSN----VAGTTRDAVDTSFTYNQQE 224
Query: 154 INIIDTPGHSDFGGEVE-----------RILNMVEGVLLVVDSVEGPMPQTRFVLKKALE 202
I+DT G G E + ++ E V +V+D EG + Q + + A E
Sbjct: 225 FVIVDTAGXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE 284
Query: 203 FGHAVVVVVNKID 215
G AVV+VVNK D
Sbjct: 285 AGKAVVIVVNKWD 297
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 106/285 (37%), Gaps = 71/285 (24%)
Query: 91 NIAIIAHVDHGKTTLVDAML---------------KQAKVFRDNQTVKERIMDSNDLERE 135
N+ +I HVD GK+T ++ K+A ++D ERE
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 136 RGITI---LSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEG------VLLVVDSV 186
RGITI L K + Y ++ +ID PGH DF I NM+ G +L++
Sbjct: 69 RGITIDIALWKFETPKY---QVTVIDAPGHRDF------IKNMITGTSQADCAILIIAGG 119
Query: 187 EGPMP-------QTRFVLKKALEFG-HAVVVVVNKIDR---PSARPDYVINSTFELFIEL 235
G QTR A G ++V VNK+D +R ++ T ++
Sbjct: 120 VGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKV 179
Query: 236 NATDEQCDFQAIYASGIQGKAGLSPDNL--ADDLGPLFESIMR----------------- 276
+ F I +G + DN+ A P ++ +
Sbjct: 180 GYNPKTVPFVPI--------SGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID 231
Query: 277 CIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEV 321
I P D L++ ++ G + +GR+ GV++ GM V
Sbjct: 232 AIEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVV 276
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 142/339 (41%), Gaps = 53/339 (15%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAML-----KQAKVFRDNQTVKERIMDSNDLER 134
+ R R++++ NI ++ HVDHGKTTL A+ ++ R T+K D+ ++ R
Sbjct: 2 EKRKSRQAEV-NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRR 59
Query: 135 ERGITILSKNTSITY--NDT----KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG 188
S + Y ++T +++ ID PGH + ++++G +LV+ + E
Sbjct: 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP 119
Query: 189 -PMPQTRFVLKKALEFGHA-VVVVVNKI---DRPSARPDYVINSTFELFIELNATDEQCD 243
P PQTR L G +++ NKI D+ A +Y + FIE + +
Sbjct: 120 CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENY---RQIKEFIEGTVAE---N 173
Query: 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHK- 302
I S + G ++ L ++I IP P+ + + +ML +D +K
Sbjct: 174 APIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKMLVLR-SFDVNKP 222
Query: 303 --------GRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARI------SELFVYEKFSRVS 348
G + G + G L+ G E+ + + RI +E+ + +
Sbjct: 223 GTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFV 282
Query: 349 AEIVAAGDICAVCGIDD-IQIGETIADKVSGKP--LPSI 384
E G + +D + G+ +A V GKP LP +
Sbjct: 283 EEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPV 321
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 142/339 (41%), Gaps = 53/339 (15%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAML-----KQAKVFRDNQTVKERIMDSNDLER 134
+ R R++++ NI ++ HVDHGKTTL A+ ++ R T+K D+ ++ R
Sbjct: 2 EKRKSRQAEV-NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRR 59
Query: 135 ERGITILSKNTSITY--NDT----KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG 188
S + Y ++T +++ ID PGH + ++++G +LV+ + E
Sbjct: 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP 119
Query: 189 -PMPQTRFVLKKALEFGHA-VVVVVNKI---DRPSARPDYVINSTFELFIELNATDEQCD 243
P PQTR L G +++ NKI D+ A +Y + FIE + +
Sbjct: 120 CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENY---RQIKEFIEGTVAE---N 173
Query: 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHK- 302
I S + G ++ L ++I IP P+ + + +ML +D +K
Sbjct: 174 APIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKMLVLR-SFDVNKP 222
Query: 303 --------GRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARI------SELFVYEKFSRVS 348
G + G + G L+ G E+ + + RI +E+ + +
Sbjct: 223 GTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFV 282
Query: 349 AEIVAAGDICAVCGIDD-IQIGETIADKVSGKP--LPSI 384
E G + +D + G+ +A V GKP LP +
Sbjct: 283 EEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPV 321
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 145/346 (41%), Gaps = 67/346 (19%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAML-----KQAKVFRDNQTVKERIMDSNDLER 134
+ R R++++ NI ++ HVDHGKTTL A+ ++ R T+K D+ ++ R
Sbjct: 3 EKRKTRQAEV-NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRR 60
Query: 135 ERGITILSKNTSITY--NDT----KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG 188
S + Y ++T +++ ID+PGH + ++++G +LV+ + E
Sbjct: 61 CSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEP 120
Query: 189 -PMPQTRFVLKKALEFGHA-VVVVVNKI---DRPSARPDYVINSTFELFIELNATDEQCD 243
P PQTR L G +++ NKI D+ A +Y + FI+ + +
Sbjct: 121 CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENY---RQIKEFIKGTVAE---N 174
Query: 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHK- 302
I S + G ++ L ++I IP P+ + + +ML +D +K
Sbjct: 175 APIIPISALHGA----------NIDVLVKAIEEFIPTPKRDSNKPPKMLVLR-SFDVNKP 223
Query: 303 --------GRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIV-- 352
G + G + G L+ G E+ + + RI K+ ++ EIV
Sbjct: 224 GTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRI-------KYEPITTEIVSL 276
Query: 353 -AAGDIC------AVCGIDD-----IQIGETIADKVSGKP--LPSI 384
A G + GI + G+ +A V GKP LP +
Sbjct: 277 QAGGQFVEEAYPGGLVGIGTKLDPYLTKGDLMAGNVVGKPGKLPPV 322
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 109/281 (38%), Gaps = 62/281 (22%)
Query: 96 AHVDHGKTTLVDAMLKQAK-VFRDNQTVKER----------------IMDSNDLERERGI 138
+VD GK+TL+ +L +K ++ D+ R ++D ERE+GI
Sbjct: 31 GNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGI 90
Query: 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTR--FV 196
TI + K I DTPGH + + + +++VD+ G QTR
Sbjct: 91 TIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSY 150
Query: 197 LKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAI------YAS 250
+ L H +VV +NK D LN DE+ F++I +A
Sbjct: 151 IASLLGIKH-IVVAINKXD-------------------LNGFDERV-FESIKADYLKFAE 189
Query: 251 GIQGK---------AGLSPDNLAD--DLGPLF--ESIMRCIPGPRIEKDGALQMLATNLE 297
GI K + L DN+ + + P + +S+ + I D L ++
Sbjct: 190 GIAFKPTTXAFVPXSALKGDNVVNKSERSPWYAGQSLXEILETVEIASDRNYTDLRFPVQ 249
Query: 298 YDEHKG---RIAIGRLHAGVLRKGMEVRVCTSEDSCRYARI 335
Y R G L +G++ KG E+ V S S R I
Sbjct: 250 YVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSI 290
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAML-----KQAKVFRDNQTVKERIMDSNDLER 134
+ R R++++ NI + HVDHGKTTL A+ ++ R T+K D+ ++ R
Sbjct: 2 EKRKSRQAEV-NIGXVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRR 59
Query: 135 ERGITILSKNTSITY--NDT----KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG 188
S + Y ++T +++ ID PGH ++ +G +LV+ + E
Sbjct: 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEP 119
Query: 189 -PMPQTRFVLKKALEFGHA-VVVVVNKID 215
P PQTR L G +++ NKI+
Sbjct: 120 CPRPQTREHLXALQIIGQKNIIIAQNKIE 148
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 91 NIAIIAHVDHGKTTLVDAML-----KQAKVFRDNQTVKERIMDSNDLERERGITILSKNT 145
NI ++ HVDHGKTTLV A+ K+ N V E E +
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDD 69
Query: 146 SITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-PMPQTR--FVLKKALE 202
+ +I+ ID PGH + +++G +LVV + E P PQTR FV +
Sbjct: 70 EPKFL-RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG 128
Query: 203 FGHAVVVVVNKID 215
+ +++V NK+D
Sbjct: 129 VKN-LIIVQNKVD 140
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 102/266 (38%), Gaps = 59/266 (22%)
Query: 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI--- 147
NI ++ HVDHGKT+L A+ V+ D S +L R I + + I
Sbjct: 10 NIGMVGHVDHGKTSLTKAL---TGVWTDRH--------SEELRRGISIRLGYADCEIRKC 58
Query: 148 ----TYNDT--------------KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG- 188
TY +++ +D+PGH + ++++G +LV+ + E
Sbjct: 59 PQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC 118
Query: 189 PMPQTRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAI 247
P PQT+ L G +++V NKID L E A + +
Sbjct: 119 PQPQTKEHLMALEILGIDKIIIVQNKID---------------LVDEKQAEENYEQIKEF 163
Query: 248 YASGIQGKAGLSPDNL--ADDLGPLFESIMRCIPGPRIEKDGALQMLAT--------NLE 297
I A + P + ++ L ++I IP P+ + D +M E
Sbjct: 164 VKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTE 223
Query: 298 YDEHKGRIAIGRLHAGVLRKGMEVRV 323
+ KG + G + GV + G E+ +
Sbjct: 224 IKDLKGGVLGGAIIQGVFKVGDEIEI 249
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 137 GITILSKNTSITYNDTKINI---IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQT 193
GITI NTS DT +D PGH+D+ + ++G +LVV + +GPMPQT
Sbjct: 1 GITI---NTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT 57
Query: 194 RFVLKKALEFG-HAVVVVVNKID 215
R + + G ++V +NK D
Sbjct: 58 REHILLGRQVGVPYIIVFLNKCD 80
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 137 GITILSKNTSITYNDTKINI---IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQT 193
GITI NTS DT +D PGH+D+ + ++G +LVV + +GPMPQT
Sbjct: 1 GITI---NTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT 57
Query: 194 RFVLKKALEFG-HAVVVVVNKID 215
R + + G ++V +NK D
Sbjct: 58 REHILLGRQVGVPYIIVFLNKCD 80
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 37/183 (20%)
Query: 92 IAIIAHVDHGKTTLVDAMLKQ--AKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY 149
IAI+ + GK+TL++ +L Q + R QT + RI+ GI +I
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV---------GIHTEGAYQAI-- 56
Query: 150 NDTKINIIDTPG-HSDFGGEVERILNM-----VEGVLLVVDSVEGP--MPQTRFVLKKAL 201
+DTPG H + + R++N + V LV+ VEG P VL K
Sbjct: 57 ------YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLR 110
Query: 202 EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD 261
E V++ VNK+D + D L L Q +F I I + GL+ D
Sbjct: 111 EGKAPVILAVNKVDNVQEKAD--------LLPHLQFLASQMNFLDIVP--ISAETGLNVD 160
Query: 262 NLA 264
+A
Sbjct: 161 TIA 163
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 37/183 (20%)
Query: 92 IAIIAHVDHGKTTLVDAMLKQ--AKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY 149
IAI+ + GK+TL++ +L Q + R QT + RI+ GI +I
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV---------GIHTEGAYQAI-- 59
Query: 150 NDTKINIIDTPG-HSDFGGEVERILNM-----VEGVLLVVDSVEGP--MPQTRFVLKKAL 201
+DTPG H + + R++N + V LV+ VEG P VL K
Sbjct: 60 ------YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLR 113
Query: 202 EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD 261
E V++ VNK+D + D L L Q +F I I + GL+ D
Sbjct: 114 EGKAPVILAVNKVDNVQEKAD--------LLPHLQFLASQMNFLDIVP--ISAETGLNVD 163
Query: 262 NLA 264
+A
Sbjct: 164 TIA 166
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 37/164 (22%)
Query: 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK---------------ERIMDSNDLE 133
+ ++ + HVD GK+T++ ++ + K ++D+ + E
Sbjct: 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEE 236
Query: 134 RERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEG------VLLVVDSVE 187
R RG+T+ +T+ + I D PGH DF I M+ G +LVVDS +
Sbjct: 237 RARGVTMDVASTTFESDKKIYEIGDAPGHRDF------ISGMIAGASSADFAVLVVDSSQ 290
Query: 188 GPMP-------QTR--FVLKKALEFGHAVVVVVNKIDRPSARPD 222
QTR L +AL +VV VNK+D S D
Sbjct: 291 NNFERGFLENGQTREHAYLLRALGISE-IVVSVNKLDLMSWSED 333
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 35.0 bits (79), Expect = 0.094, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 137 GITILSKNTSITYNDTKINIIDTPGHSDFGGEV--ERILN--MVEG----VLLVVDSVEG 188
G+T+ K TY IN+ID PG G E+I +++G V+LV DSV
Sbjct: 37 GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP 96
Query: 189 PMPQTRFVLKKALEFGHAVVVVVNKID 215
Q+ ++L + LE V++ + ID
Sbjct: 97 --EQSLYLLLEILEMEKKVILAMTAID 121
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 92 IAIIAHVDHGKTTLVDAML--KQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY 149
+AI+ + GK+TL++ +L K + + T + R++ ++ E I L +T Y
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFL--DTPGIY 70
Query: 150 NDTKINIIDTPGHSDFGGEV-ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE-FGHAV 207
K +++ GHS E+ ++ L + +L ++D+ EG P+ + + ++ V
Sbjct: 71 EPKKSDVL---GHSMV--EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPV 125
Query: 208 VVVVNKIDR 216
+VV+NKID+
Sbjct: 126 IVVINKIDK 134
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 92 IAIIAHVDHGKTTLVDAML--KQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY 149
+AI+ + GK+TL++ +L K + + T + R++ ++ E I L +T Y
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFL--DTPGIY 69
Query: 150 NDTKINIIDTPGHSDFGGEV-ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE-FGHAV 207
K +++ GHS E+ ++ L + +L ++D+ EG P+ + + ++ V
Sbjct: 70 EPKKSDVL---GHSMV--EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPV 124
Query: 208 VVVVNKIDR 216
+VV+NKID+
Sbjct: 125 IVVINKIDK 133
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 137 GITILSKNTSITYNDTKINIIDTPGHSDFGGEV--ERILN--MVEG----VLLVVDSVEG 188
G+T+ K TY IN+ID PG G E+I +++G V+LV DSV
Sbjct: 37 GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSV-N 95
Query: 189 PMPQTRFVLKKALEFGHAVVVVVNKID 215
P Q+ ++L + LE V++ + ID
Sbjct: 96 P-EQSLYLLLEILEMEKKVILAMTAID 121
>pdb|1KPS|B Chain B, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|D Chain D, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 171
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 82 RLMRRSDIRNIAIIAHVDHGKT-TLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITI 140
+L+R ++ I+ D +V A LK A VFRD+ +VK ++D+ D ++ +
Sbjct: 29 KLLRLGPKVSVLIVQQTDTSDPEKVVSAFLKVASVFRDDASVKTAVLDAIDALMKKAFSC 88
Query: 141 LSKNTS 146
S N++
Sbjct: 89 SSFNSN 94
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND 151
IA+I + + GK+T+ +A+ + V+ N G+T+ K YN
Sbjct: 6 IALIGNPNVGKSTIFNALTGE-NVYIGNWP---------------GVTVEKKEGEFEYNG 49
Query: 152 TKINIIDTPG-HSDFGGEVERILN----MVEGVLLVVDSVEG-PMPQTRFVLKKALEFGH 205
K ++D PG +S ++ I+ + E LVV+ V+ + + ++ + +E G
Sbjct: 50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGA 109
Query: 206 AVVVVVNKID 215
+++ +NK+D
Sbjct: 110 NLLLALNKMD 119
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND 151
IA+I + + GK+T+ +A+ + V+ N G+T+ K YN
Sbjct: 6 IALIGNPNVGKSTIFNALTGE-NVYIGNWP---------------GVTVEKKEGEFEYNG 49
Query: 152 TKINIIDTPG-HSDFGGEVERILN----MVEGVLLVVDSVEG-PMPQTRFVLKKALEFGH 205
K ++D PG +S ++ I+ + E LVV+ V+ + + ++ + +E G
Sbjct: 50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGA 109
Query: 206 AVVVVVNKID 215
+++ +NK+D
Sbjct: 110 NLLLALNKMD 119
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 91 NIAIIAHVDHGKTTLVDAM 109
N+ I HVDHGKTTL A+
Sbjct: 6 NVGTIGHVDHGKTTLTAAI 24
>pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|B Chain B, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|C Chain C, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|D Chain D, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
Length = 338
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 379 KPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETAD 438
K + + E M++SI+ + G+YVT + + R RN R+ DGE A
Sbjct: 232 KLIVDLMYEGGIANMNYSISNNA---EYGEYVTGPEVINAESRAAMRNALKRIQDGEYAK 288
Query: 439 TFIVSG 444
FI G
Sbjct: 289 MFITEG 294
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 142 SKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLV 182
+K I +++I+DT G +FG E+ + EG LLV
Sbjct: 43 TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV 83
>pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I Region
Fitted Into The Cryo-Em Map Of The Eef2.80s.Alf4.Gdp
Complex
Length = 46
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 98 VDHGKTTLVDAMLKQAKVFRDNQTVKER-IMDSNDLERERGITI 140
VDHGKTTL A+ N VK+ +D ER RGITI
Sbjct: 1 VDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITI 44
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND 151
IA+I + + GK+T+ +A+ + V+ N G+T+ K YN
Sbjct: 10 IALIGNPNVGKSTIFNALTGE-NVYIGNWP---------------GVTVEKKEGEFEYNG 53
Query: 152 TKINIIDTPG-HSDFGGEVERILN----MVEGVLLVVDSVEG-PMPQTRFVLKKALEFGH 205
K ++D PG +S ++ I+ + E LVV+ V+ + + ++ + +E G
Sbjct: 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGA 113
Query: 206 AVVVVVNKID 215
+++ +NK+D
Sbjct: 114 NLLLALNKMD 123
>pdb|3UIN|C Chain C, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
pdb|3UIO|C Chain C, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|C Chain C, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 171
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 68 SVSPPAET----AAEKKSRLMRRSDIRNIAIIAHVDHGKT-TLVDAMLKQAKVFRDNQTV 122
S PPA+ A +L+R ++ I D +V A LK + VF+D TV
Sbjct: 11 SSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAFLKVSSVFKDEATV 70
Query: 123 KERIMDSNDLERERGITILSKNT 145
+ + D+ D ++ S N+
Sbjct: 71 RMAVQDAVDALMQKAFNSSSFNS 93
>pdb|2GRN|B Chain B, Crystal Structure Of Human Rangap1-Ubc9
pdb|2GRO|B Chain B, Crystal Structure Of Human Rangap1-Ubc9-N85q
pdb|2GRP|B Chain B, Crystal Structure Of Human Rangap1-Ubc9-Y87a
pdb|2GRQ|B Chain B, Crystal Structure Of Human Rangap1-Ubc9-D127a
pdb|2GRR|B Chain B, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 170
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 68 SVSPPAET----AAEKKSRLMRRSDIRNIAIIAHVDHGK-TTLVDAMLKQAKVFRDNQTV 122
S PPA+ A +L+R ++ I D +V A LK + VF+D TV
Sbjct: 10 SSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAFLKVSSVFKDEATV 69
Query: 123 KERIMDSNDLERERGITILSKNTS 146
+ + D+ D ++ S N++
Sbjct: 70 RMAVQDAVDALMQKAFNSSSFNSN 93
>pdb|1Z5S|C Chain C, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
Length = 172
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 68 SVSPPAET----AAEKKSRLMRRSDIRNIAIIAHVDHGKT-TLVDAMLKQAKVFRDNQTV 122
S PPA+ A +L+R ++ I D +V A LK + VF+D TV
Sbjct: 12 SSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAFLKVSSVFKDEATV 71
Query: 123 KERIMDSNDLERERGITILSKNT 145
+ + D+ D ++ S N+
Sbjct: 72 RMAVQDAVDALMQKAFNSSSFNS 94
>pdb|2IO2|C Chain C, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|C Chain C, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 172
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 67 CSVSPPAET----AAEKKSRLMRRSDIRNIAIIAHVDHGKT-TLVDAMLKQAKVFRDNQT 121
S PPA+ A +L+R ++ I D +V A LK + VF+D T
Sbjct: 11 LSSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAFLKVSSVFKDEAT 70
Query: 122 VKERIMDSNDLERERGITILSKNT 145
V+ + D+ D ++ S N+
Sbjct: 71 VRMAVQDAVDALMQKAFNSSSFNS 94
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND 151
IA+I + + GK+T+ +A+ + V+ N G+T+ K YN
Sbjct: 7 IALIGNPNVGKSTIFNALTGE-NVYIGNWP---------------GVTVEKKEGEFEYNG 50
Query: 152 TKINIIDTPG-HSDFGGEVERILN----MVEGVLLVVDSVEGPMPQTRFVLKKAL-EFGH 205
K ++D PG +S ++ I+ + E LVV+ V+ + L L E G
Sbjct: 51 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLXEXGA 110
Query: 206 AVVVVVNKID 215
+++ +NK D
Sbjct: 111 NLLLALNKXD 120
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM----PQTRFVLKKALEFGHA- 206
T+ ++ PG + + IL V+G++ V DS + R + + E+G
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133
Query: 207 ----VVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKA 256
+V+ VNK D P A P ++ + D + F + A +GK
Sbjct: 134 DDVPIVIQVNKRDLPDALPVEMVRAV---------VDPEGKFPVLEAVATEGKG 178
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 216 RPSARPDYV----INSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLF 271
RPS Y+ I +FI +C +++ G AGL LA+ +
Sbjct: 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFS----GPAGLGKTTLANIISYEX 79
Query: 272 ESIMRCIPGPRIEKDGALQMLATNL 296
+ ++ P IEK G L + TNL
Sbjct: 80 SANIKTTAAPXIEKSGDLAAILTNL 104
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 137 GITILSKNTSITYNDTKINIIDTPGHSDFGGEV--ERILN--MVEG----VLLVVDSV 186
G+T+ K TY IN+ID PG G E+I +++G V+LV DSV
Sbjct: 37 GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSV 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,341,150
Number of Sequences: 62578
Number of extensions: 582102
Number of successful extensions: 1655
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1381
Number of HSP's gapped (non-prelim): 145
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)