Query 010392
Match_columns 512
No_of_seqs 512 out of 3567
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 00:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1217 TypA Predicted membran 100.0 8.8E-74 1.9E-78 562.5 38.3 390 87-477 3-392 (603)
2 COG0480 FusA Translation elong 100.0 2.6E-73 5.6E-78 610.0 42.7 403 86-510 7-523 (697)
3 TIGR01394 TypA_BipA GTP-bindin 100.0 8.1E-73 1.8E-77 604.9 45.4 390 89-480 1-390 (594)
4 PRK10218 GTP-binding protein; 100.0 6.1E-71 1.3E-75 589.3 46.6 390 87-477 3-392 (607)
5 KOG0465 Mitochondrial elongati 100.0 6.6E-71 1.4E-75 557.5 23.7 399 87-509 37-551 (721)
6 PRK00007 elongation factor G; 100.0 3.6E-67 7.8E-72 576.2 43.8 398 86-505 7-519 (693)
7 PRK12739 elongation factor G; 100.0 6E-67 1.3E-71 574.9 41.9 399 86-506 5-517 (691)
8 TIGR00484 EF-G translation elo 100.0 1.3E-66 2.8E-71 572.6 43.8 403 85-509 6-521 (689)
9 PRK13351 elongation factor G; 100.0 8.2E-65 1.8E-69 559.7 42.4 399 85-505 4-515 (687)
10 PRK07560 elongation factor EF- 100.0 1.9E-64 4.1E-69 557.7 40.6 417 78-506 9-497 (731)
11 PRK00741 prfC peptide chain re 100.0 1.3E-62 2.9E-67 520.0 39.6 370 87-480 8-473 (526)
12 PRK05433 GTP-binding protein L 100.0 1.8E-62 4E-67 527.1 40.8 363 85-480 3-381 (600)
13 TIGR00503 prfC peptide chain r 100.0 6.1E-62 1.3E-66 515.1 39.1 367 86-476 8-470 (527)
14 TIGR01393 lepA GTP-binding pro 100.0 1.1E-61 2.3E-66 520.7 41.4 360 88-480 2-377 (595)
15 TIGR00490 aEF-2 translation el 100.0 5.8E-62 1.3E-66 536.5 39.6 416 79-506 9-497 (720)
16 PRK12740 elongation factor G; 100.0 1.6E-61 3.4E-66 533.0 41.1 389 95-505 1-498 (668)
17 PLN00116 translation elongatio 100.0 7.8E-60 1.7E-64 526.4 40.2 418 77-505 7-596 (843)
18 PTZ00416 elongation factor 2; 100.0 6.6E-59 1.4E-63 517.8 40.6 412 80-505 10-589 (836)
19 KOG0462 Elongation factor-type 100.0 1.3E-59 2.7E-64 471.2 28.3 369 84-477 55-430 (650)
20 COG0481 LepA Membrane GTPase L 100.0 2.4E-56 5.2E-61 440.8 30.1 363 84-477 4-380 (603)
21 KOG0464 Elongation factor G [T 100.0 8.3E-55 1.8E-59 421.8 13.0 395 87-503 35-566 (753)
22 COG4108 PrfC Peptide chain rel 100.0 3.1E-50 6.7E-55 394.5 25.4 365 88-476 11-471 (528)
23 KOG0469 Elongation factor 2 [T 100.0 1.8E-48 3.8E-53 385.3 21.1 418 78-505 8-595 (842)
24 KOG0468 U5 snRNP-specific prot 100.0 1.5E-43 3.2E-48 360.2 31.2 421 75-505 114-693 (971)
25 COG5256 TEF1 Translation elong 100.0 1.8E-41 3.8E-46 333.8 27.2 285 86-380 4-320 (428)
26 PLN03126 Elongation factor Tu; 100.0 3.9E-40 8.5E-45 344.6 29.7 286 85-377 77-377 (478)
27 PLN00043 elongation factor 1-a 100.0 2.7E-40 5.8E-45 344.8 27.4 281 86-376 4-318 (447)
28 CHL00071 tufA elongation facto 100.0 4.9E-40 1.1E-44 341.3 29.1 285 85-376 8-307 (409)
29 PRK12736 elongation factor Tu; 100.0 5.9E-40 1.3E-44 339.0 29.0 282 86-376 9-297 (394)
30 PTZ00141 elongation factor 1- 100.0 1.3E-39 2.9E-44 339.8 28.9 281 86-376 4-318 (446)
31 PRK12735 elongation factor Tu; 100.0 3.9E-39 8.4E-44 333.1 28.8 284 86-376 9-299 (396)
32 TIGR00485 EF-Tu translation el 100.0 3.5E-39 7.6E-44 333.7 28.3 280 86-376 9-297 (394)
33 PRK00049 elongation factor Tu; 100.0 6.6E-39 1.4E-43 331.2 28.0 284 86-376 9-299 (396)
34 PRK12317 elongation factor 1-a 100.0 1.1E-38 2.4E-43 333.8 28.5 282 86-377 3-311 (425)
35 PLN03127 Elongation factor Tu; 100.0 3.1E-38 6.7E-43 328.9 30.6 286 85-376 57-350 (447)
36 TIGR02034 CysN sulfate adenyly 100.0 1.5E-37 3.3E-42 322.0 28.3 279 90-377 1-301 (406)
37 TIGR00483 EF-1_alpha translati 100.0 3.2E-37 7E-42 322.7 27.3 281 86-377 4-313 (426)
38 KOG0460 Mitochondrial translat 100.0 2.7E-38 5.8E-43 301.0 16.2 285 86-377 51-342 (449)
39 COG0050 TufB GTPases - transla 100.0 9.5E-38 2.1E-42 292.1 19.5 284 85-377 8-298 (394)
40 PRK05124 cysN sulfate adenylyl 100.0 1.3E-36 2.9E-41 319.5 28.8 283 86-377 24-329 (474)
41 KOG0467 Translation elongation 100.0 9.6E-37 2.1E-41 316.0 22.8 385 84-478 4-549 (887)
42 PRK05306 infB translation init 100.0 1.7E-35 3.6E-40 323.2 32.7 305 86-435 287-623 (787)
43 PTZ00327 eukaryotic translatio 100.0 3.1E-35 6.7E-40 305.6 24.9 262 85-377 30-352 (460)
44 PRK10512 selenocysteinyl-tRNA- 100.0 9.5E-35 2.1E-39 313.1 27.4 251 91-376 2-260 (614)
45 TIGR00487 IF-2 translation ini 100.0 7.5E-34 1.6E-38 303.9 33.2 302 87-435 85-421 (587)
46 KOG0458 Elongation factor 1 al 100.0 1.5E-34 3.3E-39 294.1 26.2 281 83-374 171-488 (603)
47 PRK05506 bifunctional sulfate 100.0 2E-34 4.3E-39 315.0 28.7 279 87-377 22-325 (632)
48 PRK04000 translation initiatio 100.0 5.8E-34 1.3E-38 295.3 27.5 261 86-377 6-319 (411)
49 COG2895 CysN GTPases - Sulfate 100.0 2E-34 4.4E-39 276.5 21.8 375 87-477 4-403 (431)
50 TIGR03680 eif2g_arch translati 100.0 9.3E-34 2E-38 294.0 28.0 260 87-377 2-314 (406)
51 TIGR00475 selB selenocysteine- 100.0 1.3E-33 2.9E-38 303.5 26.9 253 91-376 2-261 (581)
52 CHL00189 infB translation init 100.0 1.9E-32 4.1E-37 296.6 25.4 254 86-375 241-501 (742)
53 COG3276 SelB Selenocysteine-sp 100.0 2.2E-32 4.7E-37 271.6 20.1 250 91-376 2-256 (447)
54 PF00009 GTP_EFTU: Elongation 100.0 3.1E-30 6.7E-35 240.6 13.9 183 87-280 1-188 (188)
55 COG5257 GCD11 Translation init 100.0 1.3E-28 2.7E-33 233.7 23.2 259 87-376 8-319 (415)
56 COG5258 GTPBP1 GTPase [General 100.0 4.7E-29 1E-33 241.4 20.4 274 85-375 113-436 (527)
57 cd01884 EF_Tu EF-Tu subfamily. 100.0 9E-29 1.9E-33 231.0 18.0 191 89-281 2-195 (195)
58 cd04168 TetM_like Tet(M)-like 100.0 1.2E-28 2.5E-33 237.3 18.4 181 91-281 1-237 (237)
59 KOG1145 Mitochondrial translat 100.0 1.6E-28 3.4E-33 247.4 19.3 251 88-374 152-406 (683)
60 PRK04004 translation initiatio 100.0 6.2E-28 1.3E-32 259.1 25.2 274 88-374 5-327 (586)
61 cd01885 EF2 EF2 (for archaea a 100.0 2.6E-28 5.6E-33 231.7 19.5 190 90-281 1-222 (222)
62 cd01891 TypA_BipA TypA (tyrosi 100.0 4.1E-28 9E-33 227.4 20.0 193 89-281 2-194 (194)
63 cd01886 EF-G Elongation factor 100.0 2.5E-28 5.5E-33 239.0 18.1 142 91-232 1-144 (270)
64 KOG0461 Selenocysteine-specifi 100.0 4E-28 8.6E-33 231.7 18.1 251 88-360 6-267 (522)
65 cd04169 RF3 RF3 subfamily. Pe 100.0 6.1E-28 1.3E-32 236.1 19.4 144 89-232 2-151 (267)
66 COG0532 InfB Translation initi 100.0 1.6E-27 3.4E-32 243.1 21.7 251 88-374 4-260 (509)
67 TIGR00491 aIF-2 translation in 100.0 7.3E-27 1.6E-31 249.7 25.9 259 89-374 4-325 (590)
68 KOG0459 Polypeptide release fa 100.0 5.7E-28 1.2E-32 235.4 14.7 285 85-379 75-393 (501)
69 cd01883 EF1_alpha Eukaryotic e 99.9 1.8E-26 3.8E-31 220.3 14.2 185 91-278 1-216 (219)
70 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.7E-25 3.7E-30 211.9 17.0 187 91-281 1-207 (208)
71 cd01890 LepA LepA subfamily. 99.9 1.3E-24 2.9E-29 200.5 19.8 174 90-281 1-179 (179)
72 cd04170 EF-G_bact Elongation f 99.9 8.2E-25 1.8E-29 215.4 16.8 142 91-232 1-144 (268)
73 cd04167 Snu114p Snu114p subfam 99.9 5.6E-24 1.2E-28 202.3 18.5 190 90-281 1-213 (213)
74 cd01889 SelB_euk SelB subfamil 99.9 6.9E-24 1.5E-28 198.4 16.2 174 90-282 1-189 (192)
75 cd00881 GTP_translation_factor 99.9 3.7E-23 8.1E-28 192.0 18.9 181 91-281 1-189 (189)
76 PRK14845 translation initiatio 99.9 7.7E-23 1.7E-27 228.3 24.2 248 101-375 473-783 (1049)
77 cd01888 eIF2_gamma eIF2-gamma 99.9 1.1E-23 2.4E-28 198.7 14.3 166 90-282 1-202 (203)
78 cd04165 GTPBP1_like GTPBP1-lik 99.9 3E-22 6.5E-27 191.0 15.7 178 91-281 1-224 (224)
79 KOG0463 GTP-binding protein GP 99.9 2.5E-22 5.5E-27 194.0 12.5 273 89-376 133-456 (641)
80 cd04171 SelB SelB subfamily. 99.9 2.8E-21 6.1E-26 175.1 16.2 159 91-276 2-163 (164)
81 KOG0466 Translation initiation 99.9 3.2E-22 7E-27 188.6 8.8 327 76-443 25-416 (466)
82 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2E-20 4.4E-25 170.4 17.2 160 91-277 2-164 (168)
83 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 3.4E-20 7.3E-25 164.9 15.4 165 87-283 20-189 (221)
84 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.9E-20 8.4E-25 168.6 14.2 161 91-276 1-166 (167)
85 KOG0084 GTPase Rab1/YPT1, smal 99.8 3.4E-20 7.3E-25 165.7 13.1 161 86-278 6-171 (205)
86 COG1160 Predicted GTPases [Gen 99.8 5.8E-20 1.2E-24 185.1 16.3 153 90-279 4-165 (444)
87 cd01864 Rab19 Rab19 subfamily. 99.8 1.9E-19 4.2E-24 163.8 15.8 157 88-277 2-164 (165)
88 cd04124 RabL2 RabL2 subfamily. 99.8 2E-19 4.3E-24 163.3 15.7 155 90-279 1-158 (161)
89 KOG1143 Predicted translation 99.8 3.1E-19 6.6E-24 172.7 16.8 272 89-377 167-492 (591)
90 KOG0078 GTP-binding protein SE 99.8 2.8E-19 6E-24 162.3 15.3 163 85-279 8-174 (207)
91 PF02421 FeoB_N: Ferrous iron 99.8 1.4E-19 3E-24 161.1 13.1 147 90-274 1-156 (156)
92 cd01865 Rab3 Rab3 subfamily. 99.8 2.9E-19 6.2E-24 162.8 15.1 158 90-279 2-163 (165)
93 KOG0092 GTPase Rab5/YPT51 and 99.8 1.7E-19 3.7E-24 160.6 13.0 164 88-283 4-171 (200)
94 cd01867 Rab8_Rab10_Rab13_like 99.8 4.1E-19 9E-24 162.1 15.7 157 88-278 2-164 (167)
95 cd01894 EngA1 EngA1 subfamily. 99.8 4.5E-19 9.8E-24 159.3 15.4 149 93-278 1-157 (157)
96 cd04145 M_R_Ras_like M-Ras/R-R 99.8 7.8E-19 1.7E-23 159.3 17.1 157 89-278 2-163 (164)
97 cd04121 Rab40 Rab40 subfamily. 99.8 4.8E-19 1E-23 164.8 15.9 158 87-278 4-166 (189)
98 TIGR00436 era GTP-binding prot 99.8 7.1E-19 1.5E-23 173.3 18.0 157 91-281 2-166 (270)
99 cd04122 Rab14 Rab14 subfamily. 99.8 4.6E-19 9.9E-24 161.6 15.4 158 89-278 2-163 (166)
100 cd04154 Arl2 Arl2 subfamily. 99.8 4.1E-19 8.9E-24 163.1 15.1 156 87-276 12-172 (173)
101 PRK15494 era GTPase Era; Provi 99.8 6.6E-19 1.4E-23 178.5 17.9 160 88-281 51-218 (339)
102 cd01860 Rab5_related Rab5-rela 99.8 5.9E-19 1.3E-23 160.0 15.8 158 90-279 2-163 (163)
103 PRK12299 obgE GTPase CgtA; Rev 99.8 5.1E-19 1.1E-23 178.1 16.6 191 36-280 124-329 (335)
104 cd04120 Rab12 Rab12 subfamily. 99.8 5.9E-19 1.3E-23 165.9 15.9 155 91-278 2-162 (202)
105 cd04119 RJL RJL (RabJ-Like) su 99.8 6.4E-19 1.4E-23 160.2 15.5 156 91-278 2-166 (168)
106 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 7.5E-19 1.6E-23 165.5 16.4 160 90-280 1-169 (201)
107 KOG1144 Translation initiation 99.8 3E-19 6.6E-24 185.2 14.7 216 88-329 474-740 (1064)
108 cd04157 Arl6 Arl6 subfamily. 99.8 4.3E-19 9.4E-24 160.6 13.9 153 91-276 1-161 (162)
109 COG1159 Era GTPase [General fu 99.8 7E-19 1.5E-23 168.3 15.8 163 88-282 5-175 (298)
110 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 8E-19 1.7E-23 159.9 15.6 158 89-278 2-163 (166)
111 cd04136 Rap_like Rap-like subf 99.8 9.9E-19 2.1E-23 158.4 15.8 156 90-278 2-162 (163)
112 cd04113 Rab4 Rab4 subfamily. 99.8 7.2E-19 1.6E-23 159.2 14.8 156 90-277 1-160 (161)
113 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.3E-18 2.9E-23 157.1 16.5 153 90-278 2-161 (162)
114 cd01866 Rab2 Rab2 subfamily. 99.8 1E-18 2.2E-23 159.8 15.8 159 88-278 3-165 (168)
115 smart00173 RAS Ras subfamily o 99.8 1.3E-18 2.8E-23 158.1 16.1 156 91-279 2-162 (164)
116 cd01868 Rab11_like Rab11-like. 99.8 1.2E-18 2.7E-23 158.4 16.0 156 89-278 3-164 (165)
117 COG1160 Predicted GTPases [Gen 99.8 8.1E-19 1.8E-23 176.8 15.9 160 88-278 177-350 (444)
118 cd04106 Rab23_lke Rab23-like s 99.8 1.4E-18 3E-23 157.4 15.9 155 91-277 2-161 (162)
119 PF14492 EFG_II: Elongation Fa 99.8 1.6E-19 3.4E-24 141.1 8.2 75 386-469 1-75 (75)
120 cd04127 Rab27A Rab27a subfamil 99.8 1.5E-18 3.3E-23 160.2 15.5 159 88-278 3-176 (180)
121 TIGR03594 GTPase_EngA ribosome 99.8 2.3E-18 5E-23 181.2 18.8 162 88-278 171-343 (429)
122 PTZ00369 Ras-like protein; Pro 99.8 1.9E-18 4.2E-23 161.1 16.0 158 89-279 5-167 (189)
123 cd04175 Rap1 Rap1 subgroup. T 99.8 2.4E-18 5.2E-23 156.4 16.2 154 90-278 2-162 (164)
124 cd04151 Arl1 Arl1 subfamily. 99.8 1.5E-18 3.3E-23 156.8 14.7 152 91-276 1-157 (158)
125 cd01895 EngA2 EngA2 subfamily. 99.8 3E-18 6.4E-23 156.3 16.7 161 89-277 2-173 (174)
126 cd04140 ARHI_like ARHI subfami 99.8 3E-18 6.5E-23 156.1 16.6 155 90-277 2-163 (165)
127 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.8E-18 3.9E-23 158.5 15.0 157 91-278 2-164 (170)
128 PRK03003 GTP-binding protein D 99.8 3.9E-18 8.5E-23 180.8 19.8 157 87-280 36-200 (472)
129 cd00877 Ran Ran (Ras-related n 99.8 1.9E-18 4.1E-23 157.7 15.0 156 90-279 1-159 (166)
130 cd01897 NOG NOG1 is a nucleola 99.8 2.6E-18 5.7E-23 156.6 16.0 153 90-278 1-167 (168)
131 cd04116 Rab9 Rab9 subfamily. 99.8 2.9E-18 6.4E-23 156.7 16.2 158 88-277 4-169 (170)
132 TIGR03594 GTPase_EngA ribosome 99.8 2.7E-18 5.8E-23 180.7 18.0 154 91-281 1-162 (429)
133 TIGR02729 Obg_CgtA Obg family 99.8 2.5E-18 5.5E-23 173.0 16.9 189 36-278 123-328 (329)
134 cd04110 Rab35 Rab35 subfamily. 99.8 3E-18 6.6E-23 161.1 16.1 158 88-279 5-167 (199)
135 cd04149 Arf6 Arf6 subfamily. 99.8 2.5E-18 5.3E-23 157.3 15.0 154 89-276 9-167 (168)
136 cd04158 ARD1 ARD1 subfamily. 99.8 2.8E-18 6.1E-23 157.0 15.2 157 91-280 1-162 (169)
137 cd04150 Arf1_5_like Arf1-Arf5- 99.8 3.9E-18 8.4E-23 154.5 15.9 152 91-276 2-158 (159)
138 cd01861 Rab6 Rab6 subfamily. 99.8 3.8E-18 8.3E-23 154.3 15.9 154 90-277 1-160 (161)
139 KOG0080 GTPase Rab18, small G 99.8 1.1E-18 2.3E-23 150.0 11.2 164 86-281 8-177 (209)
140 cd04112 Rab26 Rab26 subfamily. 99.8 2.5E-18 5.3E-23 160.7 14.8 160 90-281 1-165 (191)
141 cd01898 Obg Obg subfamily. Th 99.8 4.5E-18 9.9E-23 155.3 16.1 153 91-277 2-169 (170)
142 cd01862 Rab7 Rab7 subfamily. 99.8 3.8E-18 8.2E-23 156.0 15.4 155 91-278 2-166 (172)
143 smart00175 RAB Rab subfamily o 99.8 3.4E-18 7.4E-23 155.0 14.8 156 90-279 1-162 (164)
144 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 3E-18 6.5E-23 159.0 14.7 162 89-279 3-170 (183)
145 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 4.9E-18 1.1E-22 155.9 16.0 154 90-278 3-163 (172)
146 PLN03110 Rab GTPase; Provision 99.8 3.8E-18 8.2E-23 162.5 15.8 163 86-280 9-175 (216)
147 cd04114 Rab30 Rab30 subfamily. 99.8 4.4E-18 9.6E-23 155.3 15.5 158 87-278 5-168 (169)
148 cd04176 Rap2 Rap2 subgroup. T 99.8 5.9E-18 1.3E-22 153.6 16.2 156 90-278 2-162 (163)
149 KOG0098 GTPase Rab2, small G p 99.8 2.6E-18 5.7E-23 151.7 13.2 160 86-277 3-166 (216)
150 cd04109 Rab28 Rab28 subfamily. 99.8 4.5E-18 9.8E-23 162.0 15.9 155 91-279 2-166 (215)
151 PLN03071 GTP-binding nuclear p 99.8 3.6E-18 7.8E-23 163.0 15.1 159 87-279 11-172 (219)
152 cd04133 Rop_like Rop subfamily 99.8 3.8E-18 8.3E-23 157.0 14.7 159 90-280 2-174 (176)
153 cd01863 Rab18 Rab18 subfamily. 99.8 3.8E-18 8.3E-23 154.4 14.5 155 90-277 1-160 (161)
154 cd04128 Spg1 Spg1p. Spg1p (se 99.8 3.9E-18 8.5E-23 158.0 14.8 156 91-278 2-165 (182)
155 PRK00093 GTP-binding protein D 99.8 4.9E-18 1.1E-22 178.9 17.4 160 88-277 172-342 (435)
156 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.9E-18 8.5E-23 153.9 14.4 152 91-276 1-157 (158)
157 smart00177 ARF ARF-like small 99.8 5.6E-18 1.2E-22 156.0 15.5 157 88-278 12-173 (175)
158 TIGR03598 GTPase_YsxC ribosome 99.8 4.2E-18 9.2E-23 157.4 14.7 152 83-256 12-177 (179)
159 PLN00223 ADP-ribosylation fact 99.8 5E-18 1.1E-22 157.2 15.1 157 87-278 15-177 (181)
160 cd04115 Rab33B_Rab33A Rab33B/R 99.8 6.4E-18 1.4E-22 154.7 15.5 159 89-278 2-168 (170)
161 cd00154 Rab Rab family. Rab G 99.8 6E-18 1.3E-22 151.7 15.0 153 91-275 2-158 (159)
162 cd04144 Ras2 Ras2 subfamily. 99.8 4.6E-18 9.9E-23 158.7 14.7 154 91-279 1-163 (190)
163 PRK12296 obgE GTPase CgtA; Rev 99.8 5.7E-18 1.2E-22 176.7 16.8 190 36-279 125-340 (500)
164 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 6.8E-18 1.5E-22 155.3 15.4 155 88-276 14-173 (174)
165 cd00879 Sar1 Sar1 subfamily. 99.8 3.1E-18 6.7E-23 159.7 13.4 160 87-278 17-190 (190)
166 cd04161 Arl2l1_Arl13_like Arl2 99.8 6E-18 1.3E-22 154.5 14.6 159 91-276 1-166 (167)
167 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 7.9E-18 1.7E-22 153.3 15.3 151 92-276 2-163 (164)
168 PLN03108 Rab family protein; P 99.8 8.8E-18 1.9E-22 159.4 16.2 160 87-278 4-167 (210)
169 cd01893 Miro1 Miro1 subfamily. 99.8 1E-17 2.3E-22 152.7 16.0 157 91-278 2-163 (166)
170 cd04123 Rab21 Rab21 subfamily. 99.8 9.2E-18 2E-22 151.6 15.5 157 90-278 1-161 (162)
171 cd04118 Rab24 Rab24 subfamily. 99.8 8.5E-18 1.8E-22 157.2 15.7 157 91-278 2-165 (193)
172 cd04117 Rab15 Rab15 subfamily. 99.8 1.1E-17 2.5E-22 151.7 16.0 153 91-277 2-160 (161)
173 cd04126 Rab20 Rab20 subfamily. 99.8 1.2E-17 2.5E-22 158.9 16.7 160 90-278 1-189 (220)
174 cd01892 Miro2 Miro2 subfamily. 99.8 7.4E-18 1.6E-22 154.3 14.4 161 88-279 3-166 (169)
175 PRK12297 obgE GTPase CgtA; Rev 99.8 8.6E-18 1.9E-22 173.4 16.5 188 36-280 124-328 (424)
176 KOG0093 GTPase Rab3, small G p 99.8 4.6E-18 1E-22 144.0 11.7 161 86-278 18-182 (193)
177 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.4E-17 3.1E-22 149.4 15.8 147 90-278 2-156 (157)
178 cd01879 FeoB Ferrous iron tran 99.8 8.1E-18 1.7E-22 151.5 14.1 147 94-277 1-155 (158)
179 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.3E-17 2.9E-22 154.3 15.6 160 87-277 3-178 (182)
180 smart00178 SAR Sar1p-like memb 99.8 9.4E-18 2E-22 155.8 14.6 159 87-277 15-183 (184)
181 PRK12298 obgE GTPase CgtA; Rev 99.8 1E-17 2.2E-22 172.0 16.0 193 36-280 125-334 (390)
182 cd04142 RRP22 RRP22 subfamily. 99.8 1.2E-17 2.7E-22 156.7 15.1 157 91-280 2-175 (198)
183 PRK03003 GTP-binding protein D 99.8 7.9E-18 1.7E-22 178.5 15.5 160 88-278 210-381 (472)
184 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.5E-17 3.3E-22 153.1 15.4 153 90-277 2-173 (175)
185 cd04101 RabL4 RabL4 (Rab-like4 99.8 1.7E-17 3.7E-22 150.6 15.5 156 91-278 2-163 (164)
186 cd04134 Rho3 Rho3 subfamily. 99.8 1.1E-17 2.5E-22 155.9 14.7 162 90-282 1-177 (189)
187 smart00176 RAN Ran (Ras-relate 99.8 8.5E-18 1.8E-22 157.7 13.9 151 95-279 1-154 (200)
188 cd04139 RalA_RalB RalA/RalB su 99.8 1.6E-17 3.5E-22 150.4 15.3 156 90-278 1-161 (164)
189 PTZ00133 ADP-ribosylation fact 99.8 2.1E-17 4.5E-22 153.2 16.2 155 89-278 17-177 (182)
190 PLN03118 Rab family protein; P 99.8 2.6E-17 5.6E-22 156.3 17.2 160 88-280 13-178 (211)
191 cd01875 RhoG RhoG subfamily. 99.8 1.5E-17 3.3E-22 155.4 15.3 163 89-282 3-180 (191)
192 cd04125 RabA_like RabA-like su 99.8 1.5E-17 3.2E-22 154.9 15.2 158 90-279 1-162 (188)
193 cd04147 Ras_dva Ras-dva subfam 99.8 1.7E-17 3.6E-22 156.0 15.4 158 91-281 1-165 (198)
194 PRK00093 GTP-binding protein D 99.8 3.1E-17 6.6E-22 172.9 19.1 154 90-280 2-163 (435)
195 PRK00089 era GTPase Era; Revie 99.8 3.5E-17 7.6E-22 163.3 18.3 162 88-281 4-173 (292)
196 cd04111 Rab39 Rab39 subfamily. 99.7 2.6E-17 5.6E-22 156.2 16.0 157 89-279 2-166 (211)
197 cd01871 Rac1_like Rac1-like su 99.7 2.4E-17 5.2E-22 151.6 15.3 157 90-277 2-173 (174)
198 PRK09518 bifunctional cytidyla 99.7 3.2E-17 7E-22 181.8 19.3 158 86-280 272-437 (712)
199 cd04177 RSR1 RSR1 subgroup. R 99.7 2.7E-17 5.9E-22 150.2 15.5 156 90-279 2-164 (168)
200 KOG0087 GTPase Rab11/YPT3, sma 99.7 7.1E-18 1.5E-22 152.4 11.2 150 85-256 10-163 (222)
201 cd04143 Rhes_like Rhes_like su 99.7 2.5E-17 5.5E-22 159.6 15.8 160 91-282 2-174 (247)
202 cd04156 ARLTS1 ARLTS1 subfamil 99.7 2.5E-17 5.5E-22 148.8 14.6 153 91-276 1-159 (160)
203 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 2.8E-17 6.1E-22 157.3 15.5 160 88-278 12-187 (232)
204 cd04135 Tc10 TC10 subfamily. 99.7 2E-17 4.3E-22 151.8 13.6 158 90-278 1-173 (174)
205 cd04131 Rnd Rnd subfamily. Th 99.7 3E-17 6.5E-22 151.5 14.8 158 90-277 2-174 (178)
206 KOG0095 GTPase Rab30, small G 99.7 1.9E-17 4.1E-22 140.5 11.9 161 86-278 4-168 (213)
207 cd04132 Rho4_like Rho4-like su 99.7 3.6E-17 7.9E-22 152.0 15.1 157 90-279 1-167 (187)
208 COG2229 Predicted GTPase [Gene 99.7 5.3E-17 1.2E-21 144.1 15.2 166 88-277 9-176 (187)
209 cd00157 Rho Rho (Ras homology) 99.7 2.9E-17 6.3E-22 150.0 14.0 156 90-276 1-170 (171)
210 cd00876 Ras Ras family. The R 99.7 4.6E-17 9.9E-22 146.7 15.0 153 91-278 1-160 (160)
211 cd04155 Arl3 Arl3 subfamily. 99.7 2.8E-17 6.1E-22 150.6 13.6 156 86-276 11-172 (173)
212 cd04159 Arl10_like Arl10-like 99.7 3.8E-17 8.3E-22 146.5 14.1 151 92-276 2-158 (159)
213 cd04163 Era Era subfamily. Er 99.7 1.6E-16 3.5E-21 143.5 18.3 157 89-277 3-167 (168)
214 cd01878 HflX HflX subfamily. 99.7 5.6E-17 1.2E-21 153.1 15.7 153 87-278 39-204 (204)
215 smart00174 RHO Rho (Ras homolo 99.7 3.9E-17 8.5E-22 149.8 14.1 154 92-278 1-171 (174)
216 cd04146 RERG_RasL11_like RERG/ 99.7 3.9E-17 8.5E-22 148.6 13.8 156 91-278 1-163 (165)
217 PF00025 Arf: ADP-ribosylation 99.7 3E-17 6.4E-22 151.1 13.1 159 86-277 11-174 (175)
218 cd04137 RheB Rheb (Ras Homolog 99.7 5.9E-17 1.3E-21 149.6 15.1 154 90-278 2-162 (180)
219 KOG0086 GTPase Rab4, small G p 99.7 1.5E-17 3.2E-22 141.7 9.9 150 86-257 6-159 (214)
220 PRK00454 engB GTP-binding prot 99.7 7.9E-17 1.7E-21 150.8 16.0 161 85-279 20-194 (196)
221 PRK05291 trmE tRNA modificatio 99.7 5E-17 1.1E-21 170.7 15.5 148 89-279 215-370 (449)
222 cd04130 Wrch_1 Wrch-1 subfamil 99.7 5.3E-17 1.1E-21 149.1 13.8 155 90-275 1-170 (173)
223 PRK04213 GTP-binding protein; 99.7 1.1E-16 2.5E-21 150.6 16.4 159 88-281 8-194 (201)
224 PRK09518 bifunctional cytidyla 99.7 4.3E-17 9.3E-22 180.8 15.4 163 88-280 449-622 (712)
225 KOG0394 Ras-related GTPase [Ge 99.7 1.5E-17 3.2E-22 146.7 8.8 162 87-278 7-177 (210)
226 PRK15467 ethanolamine utilizat 99.7 6.1E-17 1.3E-21 146.4 12.8 143 90-280 2-148 (158)
227 cd04148 RGK RGK subfamily. Th 99.7 1.3E-16 2.7E-21 152.6 15.3 155 91-279 2-163 (221)
228 cd01870 RhoA_like RhoA-like su 99.7 1.4E-16 3E-21 146.3 13.8 157 90-277 2-173 (175)
229 TIGR00450 mnmE_trmE_thdF tRNA 99.7 2.6E-16 5.5E-21 164.4 17.5 151 87-278 201-359 (442)
230 TIGR00231 small_GTP small GTP- 99.7 3.7E-16 8.1E-21 139.5 16.1 149 90-274 2-159 (161)
231 cd03690 Tet_II Tet_II: This su 99.7 7.2E-17 1.6E-21 129.7 10.1 85 286-374 1-85 (85)
232 TIGR03156 GTP_HflX GTP-binding 99.7 1.3E-16 2.8E-21 162.0 13.8 151 87-277 187-350 (351)
233 PF00071 Ras: Ras family; Int 99.7 2.7E-16 5.8E-21 142.4 14.4 156 91-278 1-160 (162)
234 KOG0073 GTP-binding ADP-ribosy 99.7 3.1E-16 6.7E-21 135.7 13.8 146 87-255 14-164 (185)
235 TIGR02528 EutP ethanolamine ut 99.7 1.2E-16 2.5E-21 141.7 11.7 136 91-275 2-141 (142)
236 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 3E-16 6.5E-21 149.4 15.2 158 90-277 2-174 (222)
237 PRK09554 feoB ferrous iron tra 99.7 2.9E-16 6.2E-21 173.6 17.3 153 89-279 3-168 (772)
238 COG0218 Predicted GTPase [Gene 99.7 6.7E-16 1.4E-20 140.3 16.5 166 82-278 17-196 (200)
239 COG0486 ThdF Predicted GTPase 99.7 1.9E-16 4E-21 160.3 14.3 155 88-281 216-378 (454)
240 cd00880 Era_like Era (E. coli 99.7 4.3E-16 9.2E-21 139.2 15.2 154 94-277 1-162 (163)
241 cd04103 Centaurin_gamma Centau 99.7 5.2E-16 1.1E-20 140.4 14.9 149 90-277 1-157 (158)
242 cd01881 Obg_like The Obg-like 99.7 2.8E-16 6.1E-21 144.1 12.9 150 94-277 1-175 (176)
243 KOG0079 GTP-binding protein H- 99.7 1.3E-16 2.7E-21 135.4 9.0 159 88-278 7-168 (198)
244 cd04092 mtEFG2_II_like mtEFG2_ 99.7 2.5E-16 5.4E-21 126.2 10.3 83 289-374 1-83 (83)
245 cd03689 RF3_II RF3_II: this su 99.7 5.7E-16 1.2E-20 124.2 10.3 81 291-374 1-84 (85)
246 PRK11058 GTPase HflX; Provisio 99.7 1.5E-15 3.2E-20 157.8 15.7 154 88-280 196-363 (426)
247 PTZ00132 GTP-binding nuclear p 99.7 3.5E-15 7.6E-20 142.0 16.7 160 86-279 6-168 (215)
248 cd04102 RabL3 RabL3 (Rab-like3 99.7 2.2E-15 4.8E-20 141.4 14.8 115 91-219 2-144 (202)
249 cd01873 RhoBTB RhoBTB subfamil 99.6 2.7E-15 5.7E-20 140.5 14.9 161 90-277 3-194 (195)
250 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 1E-15 2.2E-20 122.7 10.3 83 289-374 1-83 (83)
251 cd01876 YihA_EngB The YihA (En 99.6 5.2E-15 1.1E-19 134.0 15.9 155 92-278 2-170 (170)
252 cd04129 Rho2 Rho2 subfamily. 99.6 3.4E-15 7.4E-20 138.9 14.7 156 90-278 2-172 (187)
253 COG0536 Obg Predicted GTPase [ 99.6 2.9E-15 6.3E-20 145.2 14.5 194 36-281 125-335 (369)
254 KOG1423 Ras-like GTPase ERA [C 99.6 1.4E-14 2.9E-19 137.9 18.2 169 86-281 69-273 (379)
255 cd04091 mtEFG1_II_like mtEFG1_ 99.6 1.7E-15 3.6E-20 120.7 10.1 81 289-374 1-81 (81)
256 KOG1489 Predicted GTP-binding 99.6 2.6E-15 5.6E-20 143.7 12.2 155 87-277 194-365 (366)
257 cd00882 Ras_like_GTPase Ras-li 99.6 4.2E-15 9.1E-20 131.2 12.3 149 94-275 1-156 (157)
258 cd03691 BipA_TypA_II BipA_TypA 99.6 4.4E-15 9.5E-20 119.9 11.2 86 289-374 1-86 (86)
259 KOG0097 GTPase Rab14, small G 99.6 5.2E-15 1.1E-19 124.5 11.5 151 85-257 7-161 (215)
260 TIGR00437 feoB ferrous iron tr 99.6 5.7E-15 1.2E-19 159.7 15.1 146 96-278 1-154 (591)
261 KOG0088 GTPase Rab21, small G 99.6 5.4E-16 1.2E-20 133.0 5.5 160 86-277 10-173 (218)
262 KOG0081 GTPase Rab27, small G 99.6 1.7E-16 3.7E-21 136.2 2.1 164 87-278 7-184 (219)
263 COG1084 Predicted GTPase [Gene 99.6 9.4E-15 2E-19 141.2 13.8 155 87-276 166-333 (346)
264 cd04104 p47_IIGP_like p47 (47- 99.6 9.4E-15 2E-19 137.1 13.2 167 90-281 2-186 (197)
265 cd01882 BMS1 Bms1. Bms1 is an 99.6 4.6E-14 9.9E-19 135.1 18.1 181 87-298 37-220 (225)
266 PLN00023 GTP-binding protein; 99.6 1.9E-14 4.1E-19 141.8 15.1 121 85-219 17-166 (334)
267 PF10662 PduV-EutP: Ethanolami 99.6 8.8E-15 1.9E-19 127.4 10.9 137 90-275 2-142 (143)
268 PF01926 MMR_HSR1: 50S ribosom 99.6 1.8E-14 3.8E-19 123.2 12.7 107 91-213 1-116 (116)
269 KOG0070 GTP-binding ADP-ribosy 99.6 7.3E-15 1.6E-19 130.8 10.1 161 86-280 14-179 (181)
270 cd03699 lepA_II lepA_II: This 99.6 1.1E-14 2.5E-19 117.3 10.3 82 289-374 1-86 (86)
271 KOG0091 GTPase Rab39, small G 99.6 8.7E-15 1.9E-19 126.4 9.9 159 88-278 7-172 (213)
272 KOG0083 GTPase Rab26/Rab37, sm 99.6 4.8E-16 1E-20 129.5 1.6 153 94-278 2-159 (192)
273 cd04105 SR_beta Signal recogni 99.6 2.3E-14 4.9E-19 135.1 13.0 114 90-222 1-127 (203)
274 cd01896 DRG The developmentall 99.6 5.6E-14 1.2E-18 135.2 14.9 82 91-188 2-90 (233)
275 COG0370 FeoB Fe2+ transport sy 99.5 8.5E-14 1.8E-18 146.8 15.9 155 90-281 4-166 (653)
276 COG1100 GTPase SAR1 and relate 99.5 6.4E-14 1.4E-18 133.5 13.4 165 90-279 6-185 (219)
277 KOG0075 GTP-binding ADP-ribosy 99.5 3.7E-14 8E-19 120.5 8.9 156 90-279 21-182 (186)
278 KOG0076 GTP-binding ADP-ribosy 99.5 4.3E-14 9.4E-19 123.7 9.1 169 87-281 15-189 (197)
279 COG2262 HflX GTPases [General 99.5 2.6E-13 5.6E-18 135.2 14.8 156 86-280 189-357 (411)
280 KOG0071 GTP-binding ADP-ribosy 99.5 3.2E-13 7E-18 113.9 12.4 156 89-278 17-177 (180)
281 COG3596 Predicted GTPase [Gene 99.5 1.6E-13 3.5E-18 129.7 11.8 162 86-281 36-224 (296)
282 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 3E-13 6.5E-18 126.8 13.5 159 90-280 1-185 (196)
283 KOG0395 Ras-related GTPase [Ge 99.5 3E-13 6.4E-18 126.2 12.6 159 89-280 3-166 (196)
284 PF08477 Miro: Miro-like prote 99.5 7.8E-14 1.7E-18 119.6 7.8 113 91-215 1-119 (119)
285 PRK09866 hypothetical protein; 99.5 9.5E-13 2.1E-17 138.3 16.0 115 152-277 230-351 (741)
286 cd01850 CDC_Septin CDC/Septin. 99.5 4.3E-12 9.2E-17 125.0 19.8 124 88-218 3-157 (276)
287 cd03700 eEF2_snRNP_like_II EF2 99.5 3.2E-13 7E-18 110.5 9.1 85 289-373 1-92 (93)
288 cd04090 eEF2_II_snRNP Loc2 eEF 99.4 1E-12 2.2E-17 107.7 10.9 85 289-373 1-92 (94)
289 PF09439 SRPRB: Signal recogni 99.4 7.3E-13 1.6E-17 120.6 9.9 113 89-222 3-130 (181)
290 PTZ00099 rab6; Provisional 99.4 2.3E-12 4.9E-17 118.6 12.2 116 149-282 26-145 (176)
291 KOG1191 Mitochondrial GTPase [ 99.4 1.5E-12 3.3E-17 131.7 11.6 163 86-278 265-449 (531)
292 KOG4252 GTP-binding protein [S 99.4 1.4E-13 3.1E-18 120.6 3.0 149 87-257 18-169 (246)
293 KOG0393 Ras-related small GTPa 99.4 9.8E-13 2.1E-17 120.3 6.9 158 88-278 3-178 (198)
294 KOG0090 Signal recognition par 99.3 4.7E-12 1E-16 115.0 9.9 120 88-226 37-167 (238)
295 COG1163 DRG Predicted GTPase [ 99.3 8.5E-12 1.8E-16 120.3 11.9 86 86-187 60-152 (365)
296 cd01853 Toc34_like Toc34-like 99.3 1.3E-10 2.9E-15 112.4 19.0 119 85-218 27-163 (249)
297 KOG0072 GTP-binding ADP-ribosy 99.3 4.9E-12 1.1E-16 107.3 7.5 160 86-280 15-180 (182)
298 cd01899 Ygr210 Ygr210 subfamil 99.3 3.9E-11 8.5E-16 120.0 15.3 87 92-186 1-110 (318)
299 KOG0074 GTP-binding ADP-ribosy 99.3 1.3E-11 2.8E-16 104.4 9.8 146 87-256 15-166 (185)
300 cd03693 EF1_alpha_II EF1_alpha 99.3 1.9E-11 4.1E-16 99.5 10.3 85 286-377 2-90 (91)
301 KOG1532 GTPase XAB1, interacts 99.3 1.9E-12 4E-17 121.6 4.0 183 86-278 16-263 (366)
302 PRK13768 GTPase; Provisional 99.3 3.7E-11 8E-16 117.0 12.5 120 152-281 97-249 (253)
303 cd03698 eRF3_II_like eRF3_II_l 99.3 3.7E-11 8E-16 96.1 9.6 79 288-374 1-83 (83)
304 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 6.5E-11 1.4E-15 112.7 12.6 158 91-278 1-175 (232)
305 PRK09435 membrane ATPase/prote 99.2 1.9E-10 4.1E-15 115.3 16.2 177 86-279 53-260 (332)
306 PF05049 IIGP: Interferon-indu 99.2 6.9E-11 1.5E-15 119.1 12.3 171 88-282 34-221 (376)
307 TIGR02836 spore_IV_A stage IV 99.2 1.5E-10 3.3E-15 116.1 14.3 177 86-281 14-239 (492)
308 KOG0077 Vesicle coat complex C 99.2 5.6E-11 1.2E-15 103.5 9.6 150 87-255 18-179 (193)
309 PRK09602 translation-associate 99.2 3.7E-10 8.1E-15 116.4 16.0 81 90-186 2-113 (396)
310 COG4917 EutP Ethanolamine util 99.2 1.1E-10 2.4E-15 97.0 7.7 138 90-276 2-143 (148)
311 TIGR00073 hypB hydrogenase acc 99.1 7.3E-10 1.6E-14 104.8 14.0 169 86-278 19-206 (207)
312 cd04089 eRF3_II eRF3_II: domai 99.1 4.3E-10 9.3E-15 89.7 9.8 78 288-374 1-82 (82)
313 smart00053 DYNc Dynamin, GTPas 99.1 6.8E-10 1.5E-14 106.4 12.8 132 88-219 25-207 (240)
314 PF03144 GTP_EFTU_D2: Elongati 99.1 7.1E-11 1.5E-15 92.3 4.4 71 303-373 1-74 (74)
315 PF03029 ATP_bind_1: Conserved 99.1 1.2E-10 2.5E-15 112.1 6.0 113 153-277 92-235 (238)
316 cd03695 CysN_NodQ_II CysN_NodQ 99.1 8.4E-10 1.8E-14 87.7 9.7 79 289-374 1-81 (81)
317 KOG0052 Translation elongation 99.1 2.3E-10 5.1E-15 113.6 7.6 229 87-378 5-262 (391)
318 KOG1490 GTP-binding protein CR 99.1 5E-10 1.1E-14 113.5 10.0 153 86-260 165-332 (620)
319 TIGR00991 3a0901s02IAP34 GTP-b 99.1 4.9E-09 1.1E-13 103.1 16.7 117 87-218 36-167 (313)
320 COG5192 BMS1 GTP-binding prote 99.1 4.1E-09 9E-14 107.7 16.5 212 88-328 68-292 (1077)
321 cd03694 GTPBP_II Domain II of 99.1 1.3E-09 2.7E-14 88.0 10.1 82 289-374 1-87 (87)
322 TIGR00750 lao LAO/AO transport 99.1 3.9E-09 8.5E-14 105.5 15.9 112 150-278 125-237 (300)
323 cd03697 EFTU_II EFTU_II: Elong 99.0 1.2E-09 2.6E-14 88.1 9.4 82 289-375 1-86 (87)
324 PF00350 Dynamin_N: Dynamin fa 99.0 9.8E-10 2.1E-14 100.1 9.8 64 151-214 100-168 (168)
325 PF03308 ArgK: ArgK protein; 99.0 1.4E-09 3.1E-14 103.2 10.5 172 86-278 26-229 (266)
326 cd03696 selB_II selB_II: this 99.0 1.7E-09 3.6E-14 86.5 8.9 79 289-374 1-83 (83)
327 KOG0096 GTPase Ran/TC4/GSP1 (n 99.0 8E-10 1.7E-14 98.6 7.2 146 88-257 9-157 (216)
328 KOG1673 Ras GTPases [General f 99.0 7.4E-10 1.6E-14 95.3 6.6 163 88-277 19-184 (205)
329 KOG2486 Predicted GTPase [Gene 99.0 1.9E-09 4.1E-14 102.1 9.9 162 86-273 133-310 (320)
330 KOG1707 Predicted Ras related/ 99.0 3.2E-09 6.8E-14 109.8 11.3 159 89-281 9-177 (625)
331 PF00735 Septin: Septin; Inte 99.0 2.2E-08 4.7E-13 98.7 16.8 123 89-218 4-156 (281)
332 PF04548 AIG1: AIG1 family; I 99.0 5E-09 1.1E-13 99.4 11.2 115 90-219 1-131 (212)
333 PRK09601 GTP-binding protein Y 98.9 2.1E-08 4.5E-13 101.3 15.3 81 90-186 3-107 (364)
334 TIGR00101 ureG urease accessor 98.9 1.1E-08 2.4E-13 95.8 12.5 105 151-278 91-195 (199)
335 KOG3883 Ras family small GTPas 98.9 5.6E-08 1.2E-12 83.7 14.7 167 88-289 8-185 (198)
336 COG1703 ArgK Putative periplas 98.9 3.4E-08 7.5E-13 95.0 15.0 180 80-278 42-253 (323)
337 PRK10463 hydrogenase nickel in 98.9 2E-08 4.4E-13 98.1 11.6 173 81-277 96-287 (290)
338 cd01342 Translation_Factor_II_ 98.8 1.9E-08 4.1E-13 79.3 9.5 78 289-373 1-82 (83)
339 KOG0410 Predicted GTP binding 98.8 1.8E-08 3.8E-13 97.4 10.6 149 86-279 175-341 (410)
340 COG5019 CDC3 Septin family pro 98.8 5.4E-08 1.2E-12 96.2 14.2 132 80-219 14-177 (373)
341 KOG1954 Endocytosis/signaling 98.8 1.1E-07 2.5E-12 93.1 14.1 131 88-218 57-225 (532)
342 PTZ00258 GTP-binding protein; 98.8 5.1E-08 1.1E-12 99.6 11.6 85 86-186 18-126 (390)
343 KOG4423 GTP-binding protein-li 98.7 4.1E-10 8.9E-15 99.9 -3.8 160 86-277 22-192 (229)
344 KOG2655 Septin family protein 98.7 5.1E-07 1.1E-11 90.1 17.1 131 81-219 13-173 (366)
345 COG0378 HypB Ni2+-binding GTPa 98.7 1.2E-07 2.5E-12 86.2 11.3 162 89-277 13-199 (202)
346 KOG3886 GTP-binding protein [S 98.7 2.3E-08 5E-13 92.1 6.8 121 89-224 4-136 (295)
347 COG0012 Predicted GTPase, prob 98.7 2.3E-07 5.1E-12 92.4 14.2 81 90-186 3-108 (372)
348 TIGR00993 3a0901s04IAP86 chlor 98.7 5.6E-07 1.2E-11 95.8 16.5 117 87-218 116-250 (763)
349 KOG1547 Septin CDC10 and relat 98.7 5.6E-07 1.2E-11 83.5 14.3 149 77-233 34-214 (336)
350 cd01900 YchF YchF subfamily. 98.7 7.1E-08 1.5E-12 94.4 8.6 80 92-187 1-104 (274)
351 cd03692 mtIF2_IVc mtIF2_IVc: t 98.6 2.8E-07 6E-12 73.7 10.2 78 291-372 3-82 (84)
352 cd03688 eIF2_gamma_II eIF2_gam 98.6 2.3E-07 5E-12 76.4 9.5 86 285-374 2-111 (113)
353 cd01859 MJ1464 MJ1464. This f 98.6 1.3E-07 2.9E-12 85.1 8.0 95 166-280 3-97 (156)
354 KOG0448 Mitofusin 1 GTPase, in 98.6 9.1E-07 2E-11 93.4 14.1 164 88-252 108-309 (749)
355 KOG1486 GTP-binding protein DR 98.5 4.8E-07 1E-11 84.5 9.7 85 88-188 61-152 (364)
356 cd01858 NGP_1 NGP-1. Autoanti 98.3 3.3E-06 7.1E-11 76.1 8.6 91 169-278 2-94 (157)
357 cd01858 NGP_1 NGP-1. Autoanti 98.3 2E-06 4.4E-11 77.4 6.8 57 88-162 101-157 (157)
358 KOG3905 Dynein light intermedi 98.2 1.2E-05 2.7E-10 77.9 12.0 85 88-187 51-139 (473)
359 KOG0082 G-protein alpha subuni 98.2 1.4E-05 3.1E-10 79.9 12.9 82 136-217 179-275 (354)
360 cd01855 YqeH YqeH. YqeH is an 98.2 2.7E-06 5.9E-11 79.2 7.5 102 164-279 23-125 (190)
361 cd04178 Nucleostemin_like Nucl 98.2 2.4E-06 5.2E-11 78.1 6.6 57 88-162 116-172 (172)
362 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 7.4E-06 1.6E-10 72.4 8.9 79 167-255 3-83 (141)
363 cd01856 YlqF YlqF. Proteins o 98.2 4.6E-06 9.9E-11 76.3 7.5 99 160-280 3-102 (171)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 2.9E-06 6.3E-11 75.0 5.9 55 91-163 85-139 (141)
365 PF03193 DUF258: Protein of un 98.2 1.1E-06 2.5E-11 78.6 3.0 66 90-166 36-101 (161)
366 PRK10416 signal recognition pa 98.2 5.7E-05 1.2E-09 75.9 15.4 151 88-256 113-297 (318)
367 PRK14722 flhF flagellar biosyn 98.1 8.1E-06 1.8E-10 83.2 9.2 129 89-217 137-294 (374)
368 TIGR00157 ribosome small subun 98.1 5.4E-06 1.2E-10 80.4 7.6 93 164-275 25-119 (245)
369 smart00275 G_alpha G protein a 98.1 1.8E-05 4E-10 80.4 10.8 132 136-277 168-332 (342)
370 TIGR00092 GTP-binding protein 98.1 1.2E-05 2.6E-10 81.5 9.4 82 90-187 3-109 (368)
371 TIGR00064 ftsY signal recognit 98.1 5.3E-05 1.2E-09 74.5 13.5 127 87-217 70-230 (272)
372 KOG1487 GTP-binding protein DR 98.1 5.3E-06 1.1E-10 78.0 5.8 84 89-188 59-149 (358)
373 TIGR03596 GTPase_YlqF ribosome 98.1 9.8E-06 2.1E-10 80.1 8.0 99 160-280 5-104 (276)
374 cd00066 G-alpha G protein alph 98.1 1.8E-05 3.8E-10 79.8 10.0 131 136-277 145-309 (317)
375 cd01849 YlqF_related_GTPase Yl 98.1 7.5E-06 1.6E-10 73.6 6.5 57 88-162 99-155 (155)
376 cd01849 YlqF_related_GTPase Yl 98.1 1.6E-05 3.5E-10 71.4 8.6 83 177-278 1-84 (155)
377 cd01855 YqeH YqeH. YqeH is an 98.0 6.6E-06 1.4E-10 76.6 5.6 63 89-162 127-190 (190)
378 cd01856 YlqF YlqF. Proteins o 98.0 1.1E-05 2.3E-10 73.8 6.9 57 88-162 114-170 (171)
379 TIGR01425 SRP54_euk signal rec 98.0 2.4E-05 5.3E-10 81.0 10.1 125 89-217 100-252 (429)
380 cd01851 GBP Guanylate-binding 98.0 3.5E-05 7.5E-10 73.7 10.4 89 87-187 5-103 (224)
381 PF05783 DLIC: Dynein light in 98.0 5.7E-05 1.2E-09 79.4 12.6 85 88-187 24-112 (472)
382 TIGR03597 GTPase_YqeH ribosome 98.0 6.2E-06 1.3E-10 84.6 5.1 115 90-218 155-280 (360)
383 cd03110 Fer4_NifH_child This p 98.0 0.00012 2.5E-09 67.4 13.0 66 150-217 91-156 (179)
384 PRK12288 GTPase RsgA; Reviewed 98.0 8.5E-06 1.8E-10 82.8 5.8 65 91-166 207-271 (347)
385 KOG1491 Predicted GTP-binding 98.0 2.8E-05 6E-10 76.2 8.4 86 86-187 17-126 (391)
386 cd03115 SRP The signal recogni 98.0 9.3E-05 2E-09 67.7 11.5 66 151-218 82-153 (173)
387 TIGR03596 GTPase_YlqF ribosome 97.9 1.7E-05 3.6E-10 78.5 6.9 57 88-162 117-173 (276)
388 COG1162 Predicted GTPases [Gen 97.9 8.7E-06 1.9E-10 79.6 4.7 66 90-166 165-230 (301)
389 PRK09563 rbgA GTPase YlqF; Rev 97.9 1.7E-05 3.6E-10 78.9 6.8 99 160-280 8-107 (287)
390 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.1E-05 4.6E-10 78.2 7.5 59 88-164 120-178 (287)
391 cd03112 CobW_like The function 97.9 8.1E-05 1.8E-09 67.1 10.6 63 151-216 86-158 (158)
392 cd03114 ArgK-like The function 97.9 5E-05 1.1E-09 67.7 8.8 58 151-215 91-148 (148)
393 PF09547 Spore_IV_A: Stage IV 97.9 4.3E-05 9.4E-10 77.3 8.7 176 87-281 15-239 (492)
394 TIGR00157 ribosome small subun 97.9 1.8E-05 3.9E-10 76.7 5.8 64 90-165 121-184 (245)
395 PRK14974 cell division protein 97.9 9.1E-05 2E-09 74.7 11.0 151 88-256 139-317 (336)
396 PRK12289 GTPase RsgA; Reviewed 97.9 4.9E-05 1.1E-09 77.3 9.1 84 172-275 86-171 (352)
397 PF00448 SRP54: SRP54-type pro 97.9 4.8E-05 1E-09 71.1 7.8 124 90-217 2-153 (196)
398 COG1161 Predicted GTPases [Gen 97.8 2.3E-05 5.1E-10 79.0 5.9 57 89-163 132-188 (322)
399 PRK12289 GTPase RsgA; Reviewed 97.8 2.1E-05 4.4E-10 80.0 5.2 64 91-165 174-237 (352)
400 cd03702 IF2_mtIF2_II This fami 97.8 0.00016 3.4E-09 59.0 9.3 77 290-374 2-79 (95)
401 cd01859 MJ1464 MJ1464. This f 97.8 6.9E-05 1.5E-09 67.3 7.7 58 87-162 99-156 (156)
402 PRK00098 GTPase RsgA; Reviewed 97.8 7.5E-05 1.6E-09 74.6 8.2 84 172-274 77-162 (298)
403 cd01854 YjeQ_engC YjeQ/EngC. 97.7 4.5E-05 9.7E-10 75.8 5.9 65 90-165 162-226 (287)
404 TIGR03597 GTPase_YqeH ribosome 97.7 8.6E-05 1.9E-09 76.2 8.2 100 162-277 50-151 (360)
405 PF14578 GTP_EFTU_D4: Elongati 97.7 0.0003 6.6E-09 55.0 9.0 75 288-373 4-80 (81)
406 PRK12727 flagellar biosynthesi 97.7 0.00023 5.1E-09 75.1 11.0 127 89-217 350-497 (559)
407 KOG1534 Putative transcription 97.7 3.4E-05 7.3E-10 70.7 4.2 68 152-219 98-179 (273)
408 cd01854 YjeQ_engC YjeQ/EngC. 97.7 7E-05 1.5E-09 74.4 6.7 84 172-275 75-160 (287)
409 cd02036 MinD Bacterial cell di 97.7 0.00048 1E-08 63.0 11.4 64 153-218 64-128 (179)
410 KOG0447 Dynamin-like GTP bindi 97.7 0.00057 1.2E-08 70.7 12.4 134 86-219 305-494 (980)
411 PRK12288 GTPase RsgA; Reviewed 97.6 0.00022 4.8E-09 72.5 9.4 87 173-276 118-205 (347)
412 smart00010 small_GTPase Small 97.6 7.8E-05 1.7E-09 63.6 5.3 24 91-114 2-25 (124)
413 PRK11537 putative GTP-binding 97.6 0.00044 9.5E-09 69.6 11.2 143 88-237 3-178 (318)
414 COG0523 Putative GTPases (G3E 97.6 0.0011 2.3E-08 66.6 13.6 150 90-251 2-184 (323)
415 PRK13796 GTPase YqeH; Provisio 97.6 8.9E-05 1.9E-09 76.2 6.1 62 89-163 160-221 (365)
416 cd03703 aeIF5B_II aeIF5B_II: T 97.6 0.00061 1.3E-08 56.6 9.6 83 290-373 2-93 (110)
417 KOG3859 Septins (P-loop GTPase 97.5 0.00033 7.1E-09 66.8 8.3 129 77-218 30-190 (406)
418 KOG3887 Predicted small GTPase 97.5 0.00035 7.6E-09 65.3 8.0 116 90-220 28-151 (347)
419 PRK00771 signal recognition pa 97.5 0.00042 9E-09 72.5 9.4 123 88-217 94-245 (437)
420 PRK00098 GTPase RsgA; Reviewed 97.5 0.00015 3.4E-09 72.4 5.9 65 90-165 165-229 (298)
421 PRK11889 flhF flagellar biosyn 97.4 0.00085 1.8E-08 68.4 10.4 127 88-218 240-391 (436)
422 cd02038 FleN-like FleN is a me 97.4 0.0012 2.5E-08 58.2 9.5 103 94-216 5-109 (139)
423 PRK05703 flhF flagellar biosyn 97.4 0.0019 4E-08 67.7 12.5 125 89-217 221-370 (424)
424 cd03111 CpaE_like This protein 97.4 0.0019 4.1E-08 54.0 10.2 100 92-213 2-106 (106)
425 PRK01889 GTPase RsgA; Reviewed 97.4 0.00078 1.7E-08 69.0 9.3 82 173-274 110-192 (356)
426 PRK10867 signal recognition pa 97.4 0.0011 2.4E-08 69.1 10.5 124 88-217 99-253 (433)
427 PRK14721 flhF flagellar biosyn 97.4 0.001 2.2E-08 69.0 10.1 127 89-217 191-339 (420)
428 PF02492 cobW: CobW/HypB/UreG, 97.4 0.0004 8.7E-09 63.9 6.4 141 91-236 2-171 (178)
429 TIGR00959 ffh signal recogniti 97.3 0.0011 2.4E-08 69.1 10.1 124 88-217 98-252 (428)
430 cd03701 IF2_IF5B_II IF2_IF5B_I 97.3 0.0016 3.5E-08 53.2 8.8 76 290-373 2-78 (95)
431 cd02042 ParA ParA and ParB of 97.3 0.002 4.3E-08 53.4 9.6 82 92-198 2-84 (104)
432 KOG1707 Predicted Ras related/ 97.3 0.0035 7.7E-08 65.9 13.2 160 87-281 423-585 (625)
433 COG3640 CooC CO dehydrogenase 97.3 0.00051 1.1E-08 64.4 6.4 61 153-216 135-197 (255)
434 KOG2743 Cobalamin synthesis pr 97.3 0.0036 7.8E-08 60.6 12.1 146 86-235 54-239 (391)
435 TIGR03348 VI_IcmF type VI secr 97.3 0.00068 1.5E-08 79.9 8.8 116 88-217 110-256 (1169)
436 TIGR02475 CobW cobalamin biosy 97.3 0.0027 5.7E-08 64.7 11.6 142 89-235 4-201 (341)
437 KOG4181 Uncharacterized conser 97.2 0.0048 1E-07 60.8 12.6 34 86-119 185-218 (491)
438 KOG2485 Conserved ATP/GTP bind 97.2 0.00047 1E-08 67.2 5.6 68 86-163 140-207 (335)
439 KOG1424 Predicted GTP-binding 97.1 0.0004 8.6E-09 71.8 4.0 57 89-163 314-370 (562)
440 PRK13796 GTPase YqeH; Provisio 97.1 0.0015 3.2E-08 67.3 8.2 98 164-278 58-158 (365)
441 PRK12723 flagellar biosynthesi 97.1 0.0052 1.1E-07 63.4 11.9 127 89-217 174-325 (388)
442 PRK12724 flagellar biosynthesi 97.1 0.0027 5.8E-08 65.5 9.6 125 90-217 224-372 (432)
443 PRK06995 flhF flagellar biosyn 97.0 0.0041 8.9E-08 65.7 10.3 126 90-217 257-404 (484)
444 PRK14723 flhF flagellar biosyn 97.0 0.0015 3.2E-08 72.3 7.1 127 90-217 186-336 (767)
445 PRK12726 flagellar biosynthesi 96.9 0.0031 6.8E-08 64.1 8.4 25 88-112 205-229 (407)
446 cd01983 Fer4_NifH The Fer4_Nif 96.9 0.0085 1.8E-07 48.2 9.4 77 92-196 2-79 (99)
447 TIGR00487 IF-2 translation ini 96.9 0.0039 8.5E-08 67.9 9.3 103 268-374 469-576 (587)
448 PRK06731 flhF flagellar biosyn 96.9 0.01 2.2E-07 58.2 11.3 127 88-218 74-225 (270)
449 COG1618 Predicted nucleotide k 96.9 0.016 3.4E-07 51.5 11.0 24 89-112 5-28 (179)
450 PRK05306 infB translation init 96.8 0.022 4.7E-07 64.0 14.9 104 267-374 670-778 (787)
451 CHL00189 infB translation init 96.8 0.0048 1E-07 68.5 9.5 102 268-374 626-732 (742)
452 COG1419 FlhF Flagellar GTP-bin 96.8 0.012 2.6E-07 60.1 11.3 127 89-217 203-351 (407)
453 PRK08099 bifunctional DNA-bind 96.7 0.0042 9E-08 64.5 7.8 31 85-115 215-245 (399)
454 PRK13695 putative NTPase; Prov 96.7 0.0057 1.2E-07 56.0 7.9 36 180-215 99-137 (174)
455 cd02037 MRP-like MRP (Multiple 96.7 0.007 1.5E-07 55.0 8.4 66 150-217 66-134 (169)
456 PF00503 G-alpha: G-protein al 96.7 0.005 1.1E-07 64.1 7.9 82 136-217 219-316 (389)
457 PF05621 TniB: Bacterial TniB 96.7 0.015 3.2E-07 57.3 10.7 100 86-213 58-189 (302)
458 KOG2484 GTPase [General functi 96.7 0.0016 3.5E-08 65.4 3.9 59 87-163 250-308 (435)
459 TIGR03371 cellulose_yhjQ cellu 96.6 0.022 4.7E-07 55.0 11.7 64 152-217 115-181 (246)
460 KOG1533 Predicted GTPase [Gene 96.5 0.0037 8.1E-08 58.5 5.0 67 152-218 97-177 (290)
461 PRK13849 putative crown gall t 96.5 0.018 3.8E-07 55.3 9.5 64 150-215 82-151 (231)
462 KOG0099 G protein subunit Galp 96.4 0.006 1.3E-07 57.9 5.9 85 134-218 184-283 (379)
463 PRK10751 molybdopterin-guanine 96.4 0.01 2.2E-07 54.0 7.1 25 88-112 5-29 (173)
464 PRK01889 GTPase RsgA; Reviewed 96.4 0.0035 7.6E-08 64.2 4.6 25 90-114 196-220 (356)
465 cd04178 Nucleostemin_like Nucl 96.4 0.007 1.5E-07 55.3 5.9 42 177-218 1-44 (172)
466 KOG0780 Signal recognition par 96.4 0.021 4.5E-07 57.4 9.5 125 88-217 100-253 (483)
467 COG1162 Predicted GTPases [Gen 96.3 0.017 3.8E-07 56.8 8.7 82 176-275 80-163 (301)
468 COG0532 InfB Translation initi 96.3 0.02 4.4E-07 60.0 9.5 81 290-374 415-497 (509)
469 KOG2749 mRNA cleavage and poly 96.2 0.024 5.2E-07 56.4 8.8 29 87-115 101-129 (415)
470 PF06858 NOG1: Nucleolar GTP-b 96.2 0.013 2.7E-07 42.6 5.1 41 175-215 13-58 (58)
471 COG0541 Ffh Signal recognition 96.1 0.032 7E-07 57.2 9.6 126 87-217 98-252 (451)
472 COG3523 IcmF Type VI protein s 96.1 0.0054 1.2E-07 70.7 4.5 115 89-218 125-270 (1188)
473 COG0552 FtsY Signal recognitio 96.1 0.028 6E-07 55.9 8.8 125 87-216 137-296 (340)
474 PF03266 NTPase_1: NTPase; In 96.0 0.011 2.3E-07 53.8 5.2 23 91-113 1-23 (168)
475 PF13671 AAA_33: AAA domain; P 96.0 0.011 2.5E-07 51.7 5.2 23 92-114 2-24 (143)
476 cd02117 NifH_like This family 95.9 0.046 1E-06 51.7 9.4 67 150-217 115-188 (212)
477 TIGR03574 selen_PSTK L-seryl-t 95.9 0.031 6.7E-07 54.3 8.2 21 92-112 2-22 (249)
478 KOG2423 Nucleolar GTPase [Gene 95.8 0.005 1.1E-07 61.7 2.4 30 86-115 304-333 (572)
479 PF13555 AAA_29: P-loop contai 95.8 0.011 2.3E-07 44.0 3.3 23 91-113 25-47 (62)
480 PF00004 AAA: ATPase family as 95.5 0.086 1.9E-06 45.1 8.6 22 92-113 1-22 (132)
481 cd03116 MobB Molybdenum is an 95.4 0.054 1.2E-06 48.8 7.3 23 90-112 2-24 (159)
482 PF13207 AAA_17: AAA domain; P 95.4 0.015 3.3E-07 49.3 3.5 23 91-113 1-23 (121)
483 COG1116 TauB ABC-type nitrate/ 95.4 0.011 2.3E-07 56.4 2.7 23 92-114 32-54 (248)
484 PF08433 KTI12: Chromatin asso 95.2 0.14 2.9E-06 50.4 10.0 87 179-276 72-171 (270)
485 cd01120 RecA-like_NTPases RecA 95.2 0.15 3.2E-06 45.2 9.6 23 92-114 2-24 (165)
486 PRK08118 topology modulation p 95.2 0.02 4.3E-07 52.1 3.7 26 90-115 2-27 (167)
487 cd02040 NifH NifH gene encodes 95.1 0.079 1.7E-06 51.9 8.0 38 151-188 116-154 (270)
488 CHL00072 chlL photochlorophyll 95.1 0.12 2.5E-06 51.6 9.1 64 151-215 115-183 (290)
489 COG1763 MobB Molybdopterin-gua 95.0 0.085 1.8E-06 47.4 7.2 24 90-113 3-26 (161)
490 COG1136 SalX ABC-type antimicr 95.0 0.017 3.8E-07 54.7 2.8 22 91-112 33-54 (226)
491 PRK14493 putative bifunctional 94.9 0.068 1.5E-06 52.6 7.0 24 90-113 2-25 (274)
492 PRK07261 topology modulation p 94.9 0.025 5.5E-07 51.6 3.6 23 91-113 2-24 (171)
493 COG3839 MalK ABC-type sugar tr 94.9 0.028 6E-07 56.6 4.1 48 91-138 31-79 (338)
494 COG0563 Adk Adenylate kinase a 94.9 0.023 5E-07 52.1 3.3 102 91-207 2-107 (178)
495 cd02019 NK Nucleoside/nucleoti 94.8 0.027 6E-07 42.9 3.1 21 92-112 2-22 (69)
496 TIGR03420 DnaA_homol_Hda DnaA 94.8 0.064 1.4E-06 51.0 6.4 26 88-113 37-62 (226)
497 KOG0085 G protein subunit Galp 94.8 0.075 1.6E-06 49.8 6.4 73 146-218 193-280 (359)
498 TIGR00235 udk uridine kinase. 94.8 0.029 6.3E-07 52.8 3.9 27 87-113 4-30 (207)
499 PF03205 MobB: Molybdopterin g 94.8 0.029 6.3E-07 49.4 3.5 23 91-113 2-24 (140)
500 PF00005 ABC_tran: ABC transpo 94.7 0.023 5E-07 49.4 2.7 23 90-112 12-34 (137)
No 1
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-74 Score=562.53 Aligned_cols=390 Identities=55% Similarity=0.899 Sum_probs=379.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
..+|||+|+.|+++|||||++.|+.+++.......+.+++||+...|++|||||-.....+.|++.+|||+|||||.||.
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 46899999999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
+++++.+.+.|+++|++||.+|..+||+.+++.+.+.+++.|||+||+|+++++++++++++.++|.+++..+++++||+
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPi 162 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPI 162 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccC
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTS 326 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~ 326 (512)
+|.||+.|+...++......+.+|++.|++++|.|..+.++||+++|+...++++.|++..|||++|++++|+.|.+...
T Consensus 163 vYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~ 242 (603)
T COG1217 163 VYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS 242 (603)
T ss_pred EEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcC
Confidence 99999999998888888888999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCCeEEEEEEecCCCCCCcC
Q 010392 327 EDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGRE 406 (512)
Q Consensus 327 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~ 406 (512)
+......||.+++-+.|-++.++++|.|||||+|+|+.++.+|||||+++.+.+||.+.+.+|.++|.|.++++|+++++
T Consensus 243 ~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~E 322 (603)
T COG1217 243 DGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDEPTLSMTFSVNDSPFAGKE 322 (603)
T ss_pred CCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCccCCCCcccCCCceEEEEEecCCCCCCcC
Confidence 87777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEee
Q 010392 407 GKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLAK 477 (512)
Q Consensus 407 ~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e~ 477 (512)
|++++..++.++|.++.+.|.+|+|+..++-+.+.++|+|||||.|++|.|||+ |.|+.++.|+|+|+|-
T Consensus 323 Gk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE-GfEl~VsrP~Vi~kei 392 (603)
T COG1217 323 GKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE-GFELQVSRPEVIIKEI 392 (603)
T ss_pred CceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc-ceEEEecCceEEEEec
Confidence 999999999999999999999999999998889999999999999999999998 9999999999999994
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-73 Score=610.04 Aligned_cols=403 Identities=29% Similarity=0.439 Sum_probs=366.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECC-eeEEEEeCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGH 162 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~i~liDtPG~ 162 (512)
.+++|||+|+||.++|||||.++|+..++.+...+.+. ++++|++++|++||+||.++...+.|++ ++|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 66899999999999999999999999999988876665 6799999999999999999999999996 99999999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh-------
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL------- 235 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~------- 235 (512)
.||..++.++++.+|++++|+|+.+|++.|+..+|+++.++++|.++|+||||+..+++....+++.+.+...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999888888877655310
Q ss_pred -c------------------CC-----------c----------------------c-----------------------
Q 010392 236 -N------------------AT-----------D----------------------E----------------------- 240 (512)
Q Consensus 236 -~------------------~~-----------~----------------------~----------------------- 240 (512)
+ .. . +
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~ 246 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG 246 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHh
Confidence 0 00 0 0
Q ss_pred ---ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC--------------------cccccceeeeEEEe
Q 010392 241 ---QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI--------------------EKDGALQMLATNLE 297 (512)
Q Consensus 241 ---~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~p~~~~V~~~~ 297 (512)
...+|+++.||.++. |++.||+++.+++|+|.+ +.++|+.+++||+.
T Consensus 247 ~~~~~~~pvl~gsa~kn~----------gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~ 316 (697)
T COG0480 247 TIAGKIVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIM 316 (697)
T ss_pred hhccceeeEEeeecccCC----------cHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeE
Confidence 002577888887776 999999999999999932 33689999999999
Q ss_pred eeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCC
Q 010392 298 YDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVS 377 (512)
Q Consensus 298 ~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~ 377 (512)
.+++.|+++|+|||||+|+.|+.|++...++++ ||.+|+.++|..+++++++.||||+++.|++++.+|||||+...
T Consensus 317 ~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~e---rv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~ 393 (697)
T COG0480 317 TDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKE---RVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENK 393 (697)
T ss_pred ecCCCCeEEEEEEeccEEcCCCEEEeCCCCccE---EEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCC
Confidence 999999999999999999999999999998887 99999999999999999999999999999999999999998776
Q ss_pred CCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHH
Q 010392 378 GKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENI 457 (512)
Q Consensus 378 ~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L 457 (512)
+..++.+.+|+|+++++++|++ .+| .+||.++|.+|++|||+|+++.|++|+|++|+|||||||||+++||
T Consensus 394 ~v~~~~~~~pePVi~vavepk~----~~d-----~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl 464 (697)
T COG0480 394 PVILESMEFPEPVISVAVEPKT----KAD-----QEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRL 464 (697)
T ss_pred ccccccccCCCceEEEEEeECC----hhh-----HHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHH
Confidence 6788999999999999999987 566 7899999999999999999999999999999999999999999999
Q ss_pred chhcCceEEeeceeEEEEeecccchh----hhhhcCCCCc-cceEEEEeecccc-Cccc
Q 010392 458 LPLWRYQKNIWGLWLNFLAKDAGRCL----ICRELGRKEQ-HSLSIKFQPVAFL-DYEM 510 (512)
Q Consensus 458 ~~~y~v~~~~~~~~v~~~e~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 510 (512)
+++|||++++++|+|+||||+...+- +.+|+|+++| ++++|.++|++.+ +|++
T Consensus 465 ~~~~~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f 523 (697)
T COG0480 465 KREFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEF 523 (697)
T ss_pred HhhcCceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEE
Confidence 99999999999999999999886433 7889999999 9999999999874 6654
No 3
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=8.1e-73 Score=604.94 Aligned_cols=390 Identities=59% Similarity=0.926 Sum_probs=365.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
+|||+|+||+|+|||||+++|++..+.......+..+++|+.++|++||+|+......+.|++++++|||||||.||..+
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 58999999999999999999999888777777777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceee
Q 010392 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIY 248 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~ 248 (512)
+..+++.+|++|+|+|+.+|.+.+++.+|..+...++|+++|+||+|+..+++.++.+++.++|..++..++...+|+++
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~ 160 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVY 160 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEe
Confidence 99999999999999999999999999999999999999999999999988888888899999998877666667899999
Q ss_pred eccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCC
Q 010392 249 ASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSED 328 (512)
Q Consensus 249 ~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~ 328 (512)
+||++|++..+.....+|+.+||+.|.+++|+|..+.+.||+++|++++++++.|++++|||++|+|+.||.|++.+.+.
T Consensus 161 ~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~ 240 (594)
T TIGR01394 161 ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDG 240 (594)
T ss_pred chhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCC
Confidence 99999987766666677999999999999999988889999999999999999999999999999999999999998754
Q ss_pred ceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCCeEEEEEEecCCCCCCcCCc
Q 010392 329 SCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGK 408 (512)
Q Consensus 329 ~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~ 408 (512)
.....+|++|+.+.|.++.++++|.|||||+|+|++++.+|||||+++.+.+++++++++|+++++|.|+++|+.++|++
T Consensus 241 ~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k 320 (594)
T TIGR01394 241 TIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITVDEPTLSMTFSVNDSPLAGKEGK 320 (594)
T ss_pred ceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCccccCCCCCCCCCeEEEEEEecCCCcccccch
Confidence 33345999999999999999999999999999999999999999999888899999999999999999999999999988
Q ss_pred ccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEeeccc
Q 010392 409 YVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLAKDAG 480 (512)
Q Consensus 409 ~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e~~~~ 480 (512)
+++..+|.++|.|++++||+|+|++++++++++|+|||||||+|+++||+|+ |+|+.++.|+|+||| +.|
T Consensus 321 ~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g~e~~~~~P~V~yre-i~g 390 (594)
T TIGR01394 321 KVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE-GFELQVGRPQVIYKE-IDG 390 (594)
T ss_pred hhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc-CceEEEeCCEEEEEe-CCC
Confidence 8888999999999999999999999999999999999999999999999999 999999999999999 654
No 4
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=6.1e-71 Score=589.28 Aligned_cols=390 Identities=49% Similarity=0.854 Sum_probs=360.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
+++|||+|+||.|+|||||+++|++..+.........++++|+.++|+++|+|+......+.|++.+++|||||||.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 46899999999999999999999997776655555567999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
.++..+++.+|++|+|+|+.+|...+++.+|..+...++|.++|+||+|+..++++++++++.++|..++......++|+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PV 162 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPI 162 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999877655545567999
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccC
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTS 326 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~ 326 (512)
+++||++|++..+.....+|+.+||+.|++++|+|..+.+.||+++|++++++++.|++++|||++|+|+.||.|++.+.
T Consensus 163 i~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~ 242 (607)
T PRK10218 163 VYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS 242 (607)
T ss_pred EEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecC
Confidence 99999999987666666678999999999999999888899999999999999999999999999999999999999877
Q ss_pred CCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCCeEEEEEEecCCCCCCcC
Q 010392 327 EDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGRE 406 (512)
Q Consensus 327 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~ 406 (512)
+......+|++|+.+.|.++.++++|.|||||+++|++++.+|||||+...+.+++++++++|+++++|.++++|+.+++
T Consensus 243 ~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e 322 (607)
T PRK10218 243 EGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKE 322 (607)
T ss_pred CCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCCCcccCCCCCCCCCeEEEEEEeCCCccccch
Confidence 43322348999999999999999999999999999999999999999988888899999999999999999999998888
Q ss_pred CcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEee
Q 010392 407 GKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLAK 477 (512)
Q Consensus 407 ~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e~ 477 (512)
+++++..++.++|.+++++||+|+|++++++++++|+|+|||||+|+++||+|+ |+|+.+++|+|+||||
T Consensus 323 ~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g~e~~~~~P~V~yret 392 (607)
T PRK10218 323 GKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE-GFELAVSRPKVIFREI 392 (607)
T ss_pred hhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC-CceEEEeCCEEEEEEE
Confidence 777766677889999999999999999999999999999999999999999999 9999999999999999
No 5
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-71 Score=557.50 Aligned_cols=399 Identities=29% Similarity=0.438 Sum_probs=359.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
+++|||+++.|.++||||+.+++++..+.......+. ...||+++.|++||+|+.+....+.|.++++||||||||.|
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 4789999999999999999999999888766555443 67899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh--------c
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL--------N 236 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~--------~ 236 (512)
|.-+++++++..|++++|+|+..|++.|+..+|++++++++|.+.++||||+.++++...++++...+... +
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig 196 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIG 196 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEcccc
Confidence 99999999999999999999999999999999999999999999999999999999888888877644200 0
Q ss_pred C--------------------------------------------------------------Ccc--------------
Q 010392 237 A--------------------------------------------------------------TDE-------------- 240 (512)
Q Consensus 237 ~--------------------------------------------------------------~~~-------------- 240 (512)
. +++
T Consensus 197 ~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~ 276 (721)
T KOG0465|consen 197 SESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRA 276 (721)
T ss_pred ccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 0 000
Q ss_pred ---ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC--------------------ccc-ccceeeeEEE
Q 010392 241 ---QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI--------------------EKD-GALQMLATNL 296 (512)
Q Consensus 241 ---~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~-~p~~~~V~~~ 296 (512)
..-+||+++||+.+. |+++|||++++++|+|.. ..+ .||.++.||+
T Consensus 277 Ti~r~fvPVl~GSAlKNk----------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKl 346 (721)
T KOG0465|consen 277 TIKRSFVPVLCGSALKNK----------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKL 346 (721)
T ss_pred HhhcceeeEEechhhccc----------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEe
Confidence 001699999999998 999999999999999941 122 3999999999
Q ss_pred eeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecC-
Q 010392 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADK- 375 (512)
Q Consensus 297 ~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~- 375 (512)
..+++ |.+.|.|||+|+|++||.|+|.++++++ |+.+|..++....++|+++.|||||++.|+ ++.+|||+++.
T Consensus 347 e~g~f-GqLTyvRvYqG~L~kG~~iyN~rtgKKv---rv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~ 421 (721)
T KOG0465|consen 347 EEGRF-GQLTYVRVYQGTLSKGDTIYNVRTGKKV---RVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQ 421 (721)
T ss_pred eecCc-cceEEEEEeeeeecCCcEEEecCCCcee---EhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCc
Confidence 99999 9999999999999999999999999998 999999999999999999999999999999 89999999998
Q ss_pred CCCCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHH
Q 010392 376 VSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIE 455 (512)
Q Consensus 376 ~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~ 455 (512)
.....+..+.+|+|+++++++|.+ .++ .++++++|.++..|||+|++..|.|++|++|+|||||||||..+
T Consensus 422 ~~~~~m~si~vPePVis~aikP~~----k~d-----~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~e 492 (721)
T KOG0465|consen 422 NLALSMESIHIPEPVISVAIKPVN----KKD-----ADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVE 492 (721)
T ss_pred cccceeeeeecCCCeeEEEecccc----ccc-----HHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHH
Confidence 556678889999999999999887 455 67899999999999999999999999999999999999999999
Q ss_pred HHchhcCceEEeeceeEEEEeecccchh----hhhhcCCCCc-cceEEEEeeccccCcc
Q 010392 456 NILPLWRYQKNIWGLWLNFLAKDAGRCL----ICRELGRKEQ-HSLSIKFQPVAFLDYE 509 (512)
Q Consensus 456 ~L~~~y~v~~~~~~~~v~~~e~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~ 509 (512)
||+|+||+++++|.|+|+||||....+- -.+||||-|| +++.=.++|.+-.+++
T Consensus 493 Rl~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~ 551 (721)
T KOG0465|consen 493 RLVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNE 551 (721)
T ss_pred HHHHHhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCc
Confidence 9999999999999999999999887554 6899999999 8888899999876554
No 6
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=3.6e-67 Score=576.17 Aligned_cols=398 Identities=28% Similarity=0.408 Sum_probs=355.0
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
.+++|||+|+||+|+|||||+++|++..+.....+.+. ++++|+.+.|++||+|++.....+.|++++++|+|||||.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 56799999999999999999999998877655443332 6899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc-------
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN------- 236 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~------- 236 (512)
+|..++..++..+|++|+|+|+.+|++.+++.+|..+.+.++|+++|+||+|+..++....++++++.+....
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipi 166 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPI 166 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecC
Confidence 9999999999999999999999999999999999999999999999999999987776666666655432200
Q ss_pred -------------------C--C--------------------------------------------c------------
Q 010392 237 -------------------A--T--------------------------------------------D------------ 239 (512)
Q Consensus 237 -------------------~--~--------------------------------------------~------------ 239 (512)
. . .
T Consensus 167 sa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~ 246 (693)
T PRK00007 167 GAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALR 246 (693)
T ss_pred ccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHH
Confidence 0 0 0
Q ss_pred ----cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC--------------------cccccceeeeEE
Q 010392 240 ----EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI--------------------EKDGALQMLATN 295 (512)
Q Consensus 240 ----~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~p~~~~V~~ 295 (512)
...-+|++++||+++. |+..||+.|.+++|+|.. +++.|+.++|||
T Consensus 247 ~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK 316 (693)
T PRK00007 247 KATIANEIVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFK 316 (693)
T ss_pred HHHhcCcEEEEEecccccCc----------CHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEE
Confidence 0012688999999998 999999999999999852 236789999999
Q ss_pred EeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecC
Q 010392 296 LEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADK 375 (512)
Q Consensus 296 ~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~ 375 (512)
+..+++.|+++++|||||+|++||.|++...++.+ +|.+|+.+.|.+..+++++.|||||++.|++++++||||++.
T Consensus 317 ~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~e---ki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~ 393 (693)
T PRK00007 317 IMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKE---RIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDE 393 (693)
T ss_pred eeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCcee---EeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCC
Confidence 99999999999999999999999999988777666 999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHH
Q 010392 376 VSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIE 455 (512)
Q Consensus 376 ~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~ 455 (512)
.....++++.++.|+++++|+|.+ +.+ .+||.++|++|.++||+|+|..+++++|++|+|||||||||+++
T Consensus 394 ~~~~~l~~~~~~~Pv~~~aIep~~----~~d-----~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~ 464 (693)
T PRK00007 394 KNPIILESMEFPEPVISVAVEPKT----KAD-----QEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVD 464 (693)
T ss_pred CCccccCCCCCCCceEEEEEEECC----ccc-----HHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHH
Confidence 766677888899999999999986 455 68999999999999999999999999999999999999999999
Q ss_pred HHchhcCceEEeeceeEEEEeecccc----hhhhhhcCCCCc-cceEEEEeeccc
Q 010392 456 NILPLWRYQKNIWGLWLNFLAKDAGR----CLICRELGRKEQ-HSLSIKFQPVAF 505 (512)
Q Consensus 456 ~L~~~y~v~~~~~~~~v~~~e~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~ 505 (512)
||+++|+|++.+++|+|.||||+... .-+.+|+|+++| .++++.++|.+.
T Consensus 465 rL~~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~ 519 (693)
T PRK00007 465 RMKREFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEP 519 (693)
T ss_pred HHHHHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCC
Confidence 99999999999999999999998653 458999999999 999999999976
No 7
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=6e-67 Score=574.85 Aligned_cols=399 Identities=29% Similarity=0.402 Sum_probs=356.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
.+++|||+|+||+|+|||||+++|++..+.....+.+. .+++|+.++|++||+|++.....+.|++.+++|||||||.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 56799999999999999999999999877654433332 6799999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc-------
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN------- 236 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~------- 236 (512)
+|..++..+++.+|++|+|+|+.+|+..+++.+|..+...++|+|+++||+|+..++....++++++.+....
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecc
Confidence 9999999999999999999999999999999999999999999999999999987766666666665542200
Q ss_pred -------------------C-C-----------------------------------c----------c-----------
Q 010392 237 -------------------A-T-----------------------------------D----------E----------- 240 (512)
Q Consensus 237 -------------------~-~-----------------------------------~----------~----------- 240 (512)
. . + +
T Consensus 165 s~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~ 244 (691)
T PRK12739 165 GAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIR 244 (691)
T ss_pred cccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHH
Confidence 0 0 0 0
Q ss_pred -----ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC-------------------cccccceeeeEEE
Q 010392 241 -----QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI-------------------EKDGALQMLATNL 296 (512)
Q Consensus 241 -----~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~-------------------~~~~p~~~~V~~~ 296 (512)
..-+|++++||.++. |+..||+.|.+++|+|.. +++.|+.++|||+
T Consensus 245 ~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~ 314 (691)
T PRK12739 245 KATINMEFFPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKI 314 (691)
T ss_pred HHHHcCCEEEEEeccccCCc----------cHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEe
Confidence 011589999999998 999999999999999842 3567999999999
Q ss_pred eeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCC
Q 010392 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKV 376 (512)
Q Consensus 297 ~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~ 376 (512)
.++++.|+++|+|||||+|+.||.|++...++.+ +|.+|+.+.|.+..+++++.|||||+|.|++++++||||++..
T Consensus 315 ~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~ 391 (691)
T PRK12739 315 MTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKE---RIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEK 391 (691)
T ss_pred eeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceE---EecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCC
Confidence 9999999999999999999999999998887776 8999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHH
Q 010392 377 SGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIEN 456 (512)
Q Consensus 377 ~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~ 456 (512)
....++++.++.|+++++|+|.+ +.| .+||.++|.+|.++||+|+|.++++|+|++|+|||||||||+++|
T Consensus 392 ~~~~l~~~~~~~Pv~~~aiep~~----~~d-----~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~r 462 (691)
T PRK12739 392 APIILESMEFPEPVISLAVEPKT----KAD-----QDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDR 462 (691)
T ss_pred CccccCCCCCCCceEEEEEEECC----ccc-----HHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHH
Confidence 66678888899999999999986 455 789999999999999999999999999999999999999999999
Q ss_pred HchhcCceEEeeceeEEEEeeccc----chhhhhhcCCCCc-cceEEEEeecccc
Q 010392 457 ILPLWRYQKNIWGLWLNFLAKDAG----RCLICRELGRKEQ-HSLSIKFQPVAFL 506 (512)
Q Consensus 457 L~~~y~v~~~~~~~~v~~~e~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~ 506 (512)
|+++|+++|.+++|.|+||||+.. +...++|+|+++| .+++|.++|++.+
T Consensus 463 L~~~f~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~ 517 (691)
T PRK12739 463 MKREFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEG 517 (691)
T ss_pred HHHHhCCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCC
Confidence 999999999999999999999875 3458999999999 8999999999763
No 8
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1.3e-66 Score=572.62 Aligned_cols=403 Identities=27% Similarity=0.414 Sum_probs=357.7
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
..+++|||+|+||+|+|||||+++|++..+.+.....+. ++++|+.+.|+++|+|++.....+.|++.+++|||||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 356799999999999999999999999877765444333 489999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc------
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN------ 236 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~------ 236 (512)
.+|..++..+++.+|++|+|+|+.++...++..+|..+...++|+++|+||+|+..++....++++.+.+....
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLP 165 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 99999999999999999999999999999999999999999999999999999987776666666655432100
Q ss_pred -------------------------------------------------------CCc----------------------
Q 010392 237 -------------------------------------------------------ATD---------------------- 239 (512)
Q Consensus 237 -------------------------------------------------------~~~---------------------- 239 (512)
.++
T Consensus 166 is~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~ 245 (689)
T TIGR00484 166 IGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIR 245 (689)
T ss_pred cccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 000
Q ss_pred ----cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC-------------------cccccceeeeEEE
Q 010392 240 ----EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI-------------------EKDGALQMLATNL 296 (512)
Q Consensus 240 ----~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~-------------------~~~~p~~~~V~~~ 296 (512)
...-+|++++||++|. |+..||+.|.+++|+|.. +++.||.++|||+
T Consensus 246 ~~~~~~~~~PV~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~ 315 (689)
T TIGR00484 246 KGVLNCEFFPVLCGSAFKNK----------GVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKV 315 (689)
T ss_pred HHHhcCCEEEEEeccccCCc----------cHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEe
Confidence 0012689999999998 999999999999999852 2367899999999
Q ss_pred eeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCC
Q 010392 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKV 376 (512)
Q Consensus 297 ~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~ 376 (512)
..+++.|+++++|||||+|+.||.|++...++.+ +|.+|+.+.|.+..+++++.|||||+|.|++++.+||||++..
T Consensus 316 ~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~---~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~ 392 (689)
T TIGR00484 316 ATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKE---RVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPK 392 (689)
T ss_pred eecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceE---EecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCC
Confidence 9999999999999999999999999998877666 8999999999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHH
Q 010392 377 SGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIEN 456 (512)
Q Consensus 377 ~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~ 456 (512)
....++++.++.|+++++|+|.+ +.| .+||.++|.+|.++||+|+|..+++|+|++|+|||||||||+++|
T Consensus 393 ~~~~~~~~~~~~Pvl~~~i~p~~----~~d-----~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~ 463 (689)
T TIGR00484 393 IDVILERMEFPEPVISLAVEPKT----KAD-----QEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDR 463 (689)
T ss_pred CccccCCCCCCCceEEEEEEECC----ccc-----HHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHH
Confidence 66777888899999999999987 455 789999999999999999999999999999999999999999999
Q ss_pred HchhcCceEEeeceeEEEEeecccc----hhhhhhcCCCCc-cceEEEEeeccccCcc
Q 010392 457 ILPLWRYQKNIWGLWLNFLAKDAGR----CLICRELGRKEQ-HSLSIKFQPVAFLDYE 509 (512)
Q Consensus 457 L~~~y~v~~~~~~~~v~~~e~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 509 (512)
|+++||+++++++|.|+||||+... ...++|+|+++| +.+++.++|.+..+|+
T Consensus 464 L~~~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~g~~ 521 (689)
T TIGR00484 464 MKREFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKGYE 521 (689)
T ss_pred HHHHhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCCCcE
Confidence 9999999999999999999998653 348999999999 7999999999876654
No 9
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=8.2e-65 Score=559.69 Aligned_cols=399 Identities=28% Similarity=0.443 Sum_probs=356.8
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
..++++||+|+||.|+|||||+++|+...+.+...+.+. ++++|+.+.|+++++|+......+.|.+..++|||||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 345789999999999999999999999877655443332 468899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc------
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN------ 236 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~------ 236 (512)
.+|..++..+++.+|++++|+|+.++...++..+|..+...++|+++|+||+|+..+++...++++++.+....
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P 163 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLP 163 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999998888777777765543200
Q ss_pred --------------------C---------------------------------------------Ccc-----------
Q 010392 237 --------------------A---------------------------------------------TDE----------- 240 (512)
Q Consensus 237 --------------------~---------------------------------------------~~~----------- 240 (512)
. +..
T Consensus 164 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~ 243 (687)
T PRK13351 164 IGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243 (687)
T ss_pred cccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 0 000
Q ss_pred ------ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC------------------cccccceeeeEEE
Q 010392 241 ------QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI------------------EKDGALQMLATNL 296 (512)
Q Consensus 241 ------~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~------------------~~~~p~~~~V~~~ 296 (512)
..-+|++++||++|. |++.||+.|.+++|+|.. ++++|+.++|||+
T Consensus 244 ~~~~~~~~~~PV~~gSA~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~ 313 (687)
T PRK13351 244 REGTRSGHLVPVLFGSALKNI----------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKV 313 (687)
T ss_pred HHHHHhCCEEEEEecccCcCc----------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEe
Confidence 012689999999999 999999999999999952 4467999999999
Q ss_pred eeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCC
Q 010392 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKV 376 (512)
Q Consensus 297 ~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~ 376 (512)
..+++.|+++++||+||+|+.||.|++.+.++.+ +|.+|+.+.|.+..++++|.||||+++.|++++.+||||++..
T Consensus 314 ~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~---~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~ 390 (687)
T PRK13351 314 QYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKRE---KVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSA 390 (687)
T ss_pred eecCCCceEEEEEEeEEEEcCCCEEEeCCCCCce---EeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCC
Confidence 9999999999999999999999999999988776 8999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHH
Q 010392 377 SGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIEN 456 (512)
Q Consensus 377 ~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~ 456 (512)
....++++.+|.|+++++|+|.+ +.| ..||.++|.+|.+|||+|+|..+++|+|++|+|||||||||+++|
T Consensus 391 ~~~~~~~~~~~~pv~~~~Iep~~----~~d-----~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~r 461 (687)
T PRK13351 391 DPVLLELLTFPEPVVSLAVEPER----RGD-----EQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALER 461 (687)
T ss_pred CccccCCCCCCCccEEEEEEECC----ccc-----HHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHH
Confidence 55667778899999999999886 455 789999999999999999999999999999999999999999999
Q ss_pred HchhcCceEEeeceeEEEEeeccc----chhhhhhcCCCCc-cceEEEEeeccc
Q 010392 457 ILPLWRYQKNIWGLWLNFLAKDAG----RCLICRELGRKEQ-HSLSIKFQPVAF 505 (512)
Q Consensus 457 L~~~y~v~~~~~~~~v~~~e~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~ 505 (512)
|+++|++++.+++|.|+||||+.. ...+++|+|+++| ++++|.++|.+.
T Consensus 462 L~~~~~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~ 515 (687)
T PRK13351 462 LRREFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLER 515 (687)
T ss_pred HHHHhCCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCC
Confidence 999999999999999999999875 3559999999999 999999999864
No 10
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.9e-64 Score=557.66 Aligned_cols=417 Identities=28% Similarity=0.439 Sum_probs=347.1
Q ss_pred HHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE----CCee
Q 010392 78 EKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY----NDTK 153 (512)
Q Consensus 78 ~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~----~~~~ 153 (512)
.....+...+++|||+++||.|+|||||+++|++..+.+.....-..+++|+.++|++||+|+......+.| .++.
T Consensus 9 ~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 88 (731)
T PRK07560 9 KILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYL 88 (731)
T ss_pred HHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEE
Confidence 344455667889999999999999999999999988876654333367899999999999999999888777 4678
Q ss_pred EEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHH
Q 010392 154 INIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (512)
Q Consensus 154 i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~ 233 (512)
++|+|||||.+|..++..+++.+|++|+|+|+.+|+..+++.+|..+...++|.|+|+||+|+..+++....+++.+.+.
T Consensus 89 i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~ 168 (731)
T PRK07560 89 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLL 168 (731)
T ss_pred EEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999986654443333333222
Q ss_pred -----------HhcCCc-------cccccceeeeccccCccCCCCC--Cc----------------------CCCchhhH
Q 010392 234 -----------ELNATD-------EQCDFQAIYASGIQGKAGLSPD--NL----------------------ADDLGPLF 271 (512)
Q Consensus 234 -----------~~~~~~-------~~~~~pvi~~Sa~~g~~~~~~~--~~----------------------~~gi~~Ll 271 (512)
.+.... ...+-.++++||+.+++..... .. ..-+..||
T Consensus 169 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Ll 248 (731)
T PRK07560 169 KIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVL 248 (731)
T ss_pred HHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHH
Confidence 111100 0112347788999887442100 00 00012799
Q ss_pred HHHHHhCCCCCC-------------------------cccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccC
Q 010392 272 ESIMRCIPGPRI-------------------------EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTS 326 (512)
Q Consensus 272 ~~i~~~lp~p~~-------------------------~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~ 326 (512)
+.|.+++|+|.. +++.|+.++|||+..+++.|+++++||+||+|+.||.|++.+.
T Consensus 249 d~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~ 328 (731)
T PRK07560 249 DMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGA 328 (731)
T ss_pred HHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCC
Confidence 999999999952 3356899999999999999999999999999999999999998
Q ss_pred CCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCC-CCCCCeEEEEEEecCCCCCCc
Q 010392 327 EDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSI-KVEEPTVKMSFSINTSPFVGR 405 (512)
Q Consensus 327 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~-~~~~P~~~~av~~~~~~~~~~ 405 (512)
+..+ +|++|+.++|.+..+++++.|||||+|.|++++.+||||++.....+++++ .+|+|+++++|+|.+ ++
T Consensus 329 ~~~~---~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~----~~ 401 (731)
T PRK07560 329 KKKN---RVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKN----PK 401 (731)
T ss_pred CCce---EeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEEeCCCccccccccccCCCCeEEEEEEECC----HH
Confidence 8776 899999999999999999999999999999999999999987766677776 489999999999886 45
Q ss_pred CCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEeecccchhhh
Q 010392 406 EGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLAKDAGRCLIC 485 (512)
Q Consensus 406 ~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e~~~~~~~~~ 485 (512)
| .+||.++|.++++|||+|+|..+++|+|++|+||||||||++++||+++||++|.+++|+|+||||+.+.+..|
T Consensus 402 d-----~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~ 476 (731)
T PRK07560 402 D-----LPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVV 476 (731)
T ss_pred H-----HHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccce
Confidence 6 78999999999999999999999999999999999999999999999999999999999999999998876444
Q ss_pred hhcCCCCccceEEEEeecccc
Q 010392 486 RELGRKEQHSLSIKFQPVAFL 506 (512)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~ 506 (512)
....++...+++|.++|.+.+
T Consensus 477 ~~~~~~~~~~v~l~iePl~~~ 497 (731)
T PRK07560 477 EGKSPNKHNRFYISVEPLEEE 497 (731)
T ss_pred EEECCCCceEEEEEEEECCHH
Confidence 433333357899999998753
No 11
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.3e-62 Score=520.01 Aligned_cols=370 Identities=23% Similarity=0.348 Sum_probs=328.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee------eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTP 160 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~------~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtP 160 (512)
.++|||+|+||+|+|||||+++|++..+.+...+.+. ...+|+++.|++||+|+......+.|+++++++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4689999999999999999999999888776655543 2458999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh-----
Q 010392 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL----- 235 (512)
Q Consensus 161 G~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~----- 235 (512)
||.+|..++..++..+|++|+|+|+.+++..+++.+|..+...++|+++|+||+|+..+++.++++++++.+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~ 167 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPIT 167 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeEE
Confidence 999999999999999999999999999999999999999999999999999999998877777777766544210
Q ss_pred ---------------------------cC-----------Cc---------c--------------------------cc
Q 010392 236 ---------------------------NA-----------TD---------E--------------------------QC 242 (512)
Q Consensus 236 ---------------------------~~-----------~~---------~--------------------------~~ 242 (512)
+. ++ . ..
T Consensus 168 ~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~ 247 (526)
T PRK00741 168 WPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGE 247 (526)
T ss_pred eccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCC
Confidence 00 00 0 01
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCc---------ccccceeeeEEEe---eeCCCcEEEEEEE
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE---------KDGALQMLATNLE---YDEHKGRIAIGRL 310 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~---~~~~~G~v~~grV 310 (512)
-+||+++||++|. |+.+||+.|.+++|+|... .+.+|.++|||+. .+++.|+++|+||
T Consensus 248 ~~PV~~GSA~~n~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV 317 (526)
T PRK00741 248 LTPVFFGSALNNF----------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRV 317 (526)
T ss_pred eEEEEEeecccCc----------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEE
Confidence 2799999999999 9999999999999999531 2457999999998 4569999999999
Q ss_pred eecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCCe
Q 010392 311 HAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPT 390 (512)
Q Consensus 311 ~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~ 390 (512)
+||+|+.|+.|++..+++.+ |+.+++.+.|.+++++++|.|||||++.+++++++||||++.+ +..+++++++.|+
T Consensus 318 ~sG~l~~g~~v~~~~~~k~~---ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~~~~-~~~~~~i~~~~P~ 393 (526)
T PRK00741 318 CSGKFEKGMKVRHVRTGKDV---RISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KLKFTGIPNFAPE 393 (526)
T ss_pred eccEECCCCEEEeccCCceE---EecceEEEecCCceECceeCCCCEEEEECCCCCccCCCccCCC-ccccCCCCCCCcc
Confidence 99999999999999999887 9999999999999999999999999999999999999999865 5678899999999
Q ss_pred EEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeece
Q 010392 391 VKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGL 470 (512)
Q Consensus 391 ~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~ 470 (512)
++++|+|++ ..+ .+|+..+|++|++||+ +++.++++|+|++|+|||+|||||+++||+++|||+|.+++|
T Consensus 394 ~~~~v~p~~----~~d-----~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey~v~v~~~~~ 463 (526)
T PRK00741 394 LFRRVRLKN----PLK-----QKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEYNVEAIYEPV 463 (526)
T ss_pred EEEEEEECC----chh-----HHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHhCCEEEEecC
Confidence 999999886 455 6899999999999995 999999999999999999999999999999999999999999
Q ss_pred eEEEEeeccc
Q 010392 471 WLNFLAKDAG 480 (512)
Q Consensus 471 ~v~~~e~~~~ 480 (512)
+|.+..-..+
T Consensus 464 ~v~~~rw~~~ 473 (526)
T PRK00741 464 GVATARWVEC 473 (526)
T ss_pred CccEEEEEeC
Confidence 9999886543
No 12
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.8e-62 Score=527.15 Aligned_cols=363 Identities=30% Similarity=0.458 Sum_probs=320.9
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-----CeeEEEEeC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-----DTKINIIDT 159 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-----~~~i~liDt 159 (512)
..+++|||+|+||.|+|||||+++|++.++.+.... ...+++|+.++|++||+|+......+.|. ++.++||||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~-~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDT 81 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE-MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDT 81 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc-cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEEC
Confidence 356799999999999999999999999887665432 24789999999999999999988888875 578999999
Q ss_pred CCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 160 PGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 160 PG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
|||.+|..++.+++..+|++|+|+|++++++.++...|..+...++|+++|+||+|+..++.+...+++.+.+ +..
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~l---g~~- 157 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVI---GID- 157 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHh---CCC-
Confidence 9999999999999999999999999999999999999988888899999999999997665555555554432 211
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGM 319 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~ 319 (512)
...++++||++|. |+.+|+++|.+.+|+|..+.+.||+++||+++.+++.|+++++||++|+|+.||
T Consensus 158 ---~~~vi~iSAktG~----------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd 224 (600)
T PRK05433 158 ---ASDAVLVSAKTGI----------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGD 224 (600)
T ss_pred ---cceEEEEecCCCC----------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCC
Confidence 1238999999999 999999999999999988889999999999999999999999999999999999
Q ss_pred EEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc-c---CCccccCCeEecCCCC--CCCCCCCCCCCeEEE
Q 010392 320 EVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC-G---IDDIQIGETIADKVSG--KPLPSIKVEEPTVKM 393 (512)
Q Consensus 320 ~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-~---l~~~~~Gdtl~~~~~~--~~l~~~~~~~P~~~~ 393 (512)
.|++.+++..+ +|++|+.+. .+..+++++.|||++.+. + ++++++||||++...+ .+++++++++|++++
T Consensus 225 ~i~~~~~~~~~---~V~~i~~~~-~~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~ 300 (600)
T PRK05433 225 KIKMMSTGKEY---EVDEVGVFT-PKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPMVFA 300 (600)
T ss_pred EEEEecCCceE---EEEEeeccC-CCceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCCCcEEEE
Confidence 99999998877 889998654 488999999999998884 3 5679999999987765 478999999999999
Q ss_pred EEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEE-----ecHHHHHHHHHHHchhcCceEEee
Q 010392 394 SFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSG-----RGTLHITILIENILPLWRYQKNIW 468 (512)
Q Consensus 394 av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g-----~Gelhl~i~~~~L~~~y~v~~~~~ 468 (512)
++.|.+ ..+ .++|.++|.||++|||+|+++ ++|++.++.| ||+|||||+++||+|+||+++.++
T Consensus 301 ~i~p~~----~~d-----~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~ 369 (600)
T PRK05433 301 GLYPVD----SDD-----YEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITT 369 (600)
T ss_pred EEEECC----ccC-----HHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEe
Confidence 999876 455 789999999999999999998 5778888888 999999999999999999999999
Q ss_pred ceeEEEEeeccc
Q 010392 469 GLWLNFLAKDAG 480 (512)
Q Consensus 469 ~~~v~~~e~~~~ 480 (512)
.|+|.||||..+
T Consensus 370 ~P~V~Yreti~~ 381 (600)
T PRK05433 370 APSVVYEVTLTD 381 (600)
T ss_pred cCEEEEEEEEeC
Confidence 999999999874
No 13
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=6.1e-62 Score=515.05 Aligned_cols=367 Identities=21% Similarity=0.326 Sum_probs=326.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee------eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------ERIMDSNDLERERGITILSKNTSITYNDTKINIIDT 159 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~------~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDt 159 (512)
..++|||+|+||+|+|||||+++|+...+.+...+.+. ..++|.++.|++||+|+......+.|++.+++||||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 35689999999999999999999998877766555543 468999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh----
Q 010392 160 PGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL---- 235 (512)
Q Consensus 160 PG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~---- 235 (512)
|||.+|...+..++..+|++|+|+|+..++..++..+|+.+...++|+++|+||+|+..+++.++++++++.+...
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 9999999999999999999999999999999999999999988899999999999998777766666666554210
Q ss_pred ----------------------------cC-----------Cc-----------------------------------cc
Q 010392 236 ----------------------------NA-----------TD-----------------------------------EQ 241 (512)
Q Consensus 236 ----------------------------~~-----------~~-----------------------------------~~ 241 (512)
+. .. ..
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 247 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGG 247 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcC
Confidence 00 00 00
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCc---------ccccceeeeEEEee--e-CCCcEEEEEE
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE---------KDGALQMLATNLEY--D-EHKGRIAIGR 309 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~~--~-~~~G~v~~gr 309 (512)
.-+||+++||+++. |++.||+.+.+++|+|... .+.+|.++|||+.. | ++.|+++|+|
T Consensus 248 ~~~PV~~GSA~~n~----------Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~R 317 (527)
T TIGR00503 248 EMTPVFFGTALGNF----------GVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMR 317 (527)
T ss_pred CeeEEEEeecccCc----------cHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEE
Confidence 12689999999999 9999999999999999632 24679999999987 7 5999999999
Q ss_pred EeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCC
Q 010392 310 LHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEP 389 (512)
Q Consensus 310 V~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P 389 (512)
|+||+|+.|++|++..+++++ |+++++.+.|.+++++++|.|||||++.|++++++|||||+.. +..+++++++.|
T Consensus 318 V~sG~l~~g~~v~~~~~~k~~---ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~~~-~~~~~~i~~~~P 393 (527)
T TIGR00503 318 VVSGKYEKGMKLKHVRTGKDV---VISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KIKFTGIPNFAP 393 (527)
T ss_pred EeeeEEcCCCEEEecCCCCcE---EecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecCCC-ceeecCCCCCCc
Confidence 999999999999999999887 9999999999999999999999999999999999999999844 567888999999
Q ss_pred eEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeec
Q 010392 390 TVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWG 469 (512)
Q Consensus 390 ~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~ 469 (512)
++++++.|.+ +.+ .+|+.++|.+|++||| +++.++++|+|++|+|||+|||||+++||+++|||++.+++
T Consensus 394 ~~~~~v~~~~----~~d-----~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey~v~v~~~~ 463 (527)
T TIGR00503 394 ELFRRIRLKD----PLK-----QKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEYNVEARYEP 463 (527)
T ss_pred ceEEEEEECC----hhh-----HHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHhCCeEEEeC
Confidence 9999999886 455 6899999999999998 99999999999999999999999999999999999999999
Q ss_pred eeEEEEe
Q 010392 470 LWLNFLA 476 (512)
Q Consensus 470 ~~v~~~e 476 (512)
|+|...=
T Consensus 464 ~~v~~~r 470 (527)
T TIGR00503 464 VNVATAR 470 (527)
T ss_pred CCceEEE
Confidence 9998654
No 14
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.1e-61 Score=520.72 Aligned_cols=360 Identities=31% Similarity=0.476 Sum_probs=315.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--C---eeEEEEeCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--D---TKINIIDTPGH 162 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~---~~i~liDtPG~ 162 (512)
++|||+++||+|+|||||+++|++..+.+.... ...+++|+.++|+++|+|+......+.|. + +.++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 589999999999999999999999877665432 34788999999999999999988888774 2 68999999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+|..++..++..+|++|+|+|++++.+.++...|..+...++|+++|+||+|+..++.+...+++.+.+ +..
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~l---g~~---- 153 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVI---GLD---- 153 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHh---CCC----
Confidence 9999999999999999999999999999999988888888899999999999997655444444554433 211
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEE
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~ 322 (512)
...++++||++|. |+.+|++.|.+.+|+|..+.+.||+++||+++.+++.|+++++||++|+|+.||.|+
T Consensus 154 ~~~vi~vSAktG~----------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~ 223 (595)
T TIGR01393 154 ASEAILASAKTGI----------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIR 223 (595)
T ss_pred cceEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEE
Confidence 1147999999999 999999999999999988889999999999999999999999999999999999999
Q ss_pred EccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc-c---CCccccCCeEecCCCC--CCCCCCCCCCCeEEEEEE
Q 010392 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC-G---IDDIQIGETIADKVSG--KPLPSIKVEEPTVKMSFS 396 (512)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-~---l~~~~~Gdtl~~~~~~--~~l~~~~~~~P~~~~av~ 396 (512)
+.+.++.+ +|.+|+.+.+ +..+++++.|||++.+. + ++++++||||++..++ .++++++++.|+++.++.
T Consensus 224 ~~~~~~~~---~v~~i~~~~~-~~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~~i~ 299 (595)
T TIGR01393 224 FMSTGKEY---EVDEVGVFTP-KLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEVKPMVFAGLY 299 (595)
T ss_pred EecCCCee---EEeEEEEecC-CceECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcCCCcEEEEEEE
Confidence 99998877 8999986654 44899999999998884 3 5679999999987765 478899999999999999
Q ss_pred ecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEE-----EecHHHHHHHHHHHchhcCceEEeecee
Q 010392 397 INTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVS-----GRGTLHITILIENILPLWRYQKNIWGLW 471 (512)
Q Consensus 397 ~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~-----g~Gelhl~i~~~~L~~~y~v~~~~~~~~ 471 (512)
|.+ ..+ .+||.++|+||++|||+|+++. +|++.++. |||+|||||+++||+|+||+++.++.|+
T Consensus 300 p~~----~~d-----~~kL~~aL~kL~~eD~sl~~~~--e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~~~P~ 368 (595)
T TIGR01393 300 PID----TED-----YEDLRDALEKLKLNDASLTYEP--ESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPS 368 (595)
T ss_pred ECC----ccc-----HHHHHHHHHHHhccCCeEEEEe--cCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEEecCE
Confidence 876 455 7899999999999999999986 56665555 6999999999999999999999999999
Q ss_pred EEEEeeccc
Q 010392 472 LNFLAKDAG 480 (512)
Q Consensus 472 v~~~e~~~~ 480 (512)
|.||||..+
T Consensus 369 V~Yreti~~ 377 (595)
T TIGR01393 369 VIYRVYLTN 377 (595)
T ss_pred EEEEEEecC
Confidence 999999884
No 15
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=5.8e-62 Score=536.47 Aligned_cols=416 Identities=31% Similarity=0.477 Sum_probs=342.5
Q ss_pred HHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeE----EEECCeeE
Q 010392 79 KKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTS----ITYNDTKI 154 (512)
Q Consensus 79 ~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~----~~~~~~~i 154 (512)
....+...+++|||+++||.|+|||||+++|+...+.+.....-..+++|+.+.|++||+|+...... +.|.++++
T Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i 88 (720)
T TIGR00490 9 IKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLI 88 (720)
T ss_pred HHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEE
Confidence 34445567789999999999999999999999987766553333367899999999999999877554 56788999
Q ss_pred EEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHH
Q 010392 155 NIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE 234 (512)
Q Consensus 155 ~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~ 234 (512)
+|||||||.+|...+..++..+|++|+|+|+..|+..++..+|+.+...++|.++|+||+|+..+++....+++++.|..
T Consensus 89 ~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~ 168 (720)
T TIGR00490 89 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIK 168 (720)
T ss_pred EEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998889999999999999887777666666665532
Q ss_pred hc--------C--Cc--------cccccceeeeccccCccCCCC---------CC--------cCCC-------chhhHH
Q 010392 235 LN--------A--TD--------EQCDFQAIYASGIQGKAGLSP---------DN--------LADD-------LGPLFE 272 (512)
Q Consensus 235 ~~--------~--~~--------~~~~~pvi~~Sa~~g~~~~~~---------~~--------~~~g-------i~~Ll~ 272 (512)
.. . .+ ...+..+.+.|++.+++..-+ ++ ...+ +..||+
T Consensus 169 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld 248 (720)
T TIGR00490 169 IITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLD 248 (720)
T ss_pred hhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHH
Confidence 10 0 00 001223456676666422100 00 0111 467899
Q ss_pred HHHHhCCCCCC-------------------------cccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCC
Q 010392 273 SIMRCIPGPRI-------------------------EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE 327 (512)
Q Consensus 273 ~i~~~lp~p~~-------------------------~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~ 327 (512)
.|.+++|+|.. +++.|+.++|||+..+++.|+++++||+||+|++||.|++.+.+
T Consensus 249 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~ 328 (720)
T TIGR00490 249 MVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRK 328 (720)
T ss_pred HHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCC
Confidence 99999999941 23568999999999999999999999999999999999999998
Q ss_pred CceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCC-CCCCCC-CCCCCeEEEEEEecCCCCCCc
Q 010392 328 DSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSG-KPLPSI-KVEEPTVKMSFSINTSPFVGR 405 (512)
Q Consensus 328 ~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~-~~l~~~-~~~~P~~~~av~~~~~~~~~~ 405 (512)
..+ +|.+|+.++|.+..++++|.|||||+|.|++++.+||||++.+.. .+++++ .+++|+++++|+|.+ +.
T Consensus 329 ~~~---kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~----~~ 401 (720)
T TIGR00490 329 AKA---RIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETICTTVENITPFESIKHISEPVVTVAIEAKN----TK 401 (720)
T ss_pred Cee---EeeEEEEeccCCccCccEECCCCEEEEECccccccCceeecCCcccccCcccccCCCceEEEEEEECC----HH
Confidence 776 999999999999999999999999999999999999999976643 345655 488999999999986 45
Q ss_pred CCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEeecccchhhh
Q 010392 406 EGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLAKDAGRCLIC 485 (512)
Q Consensus 406 ~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e~~~~~~~~~ 485 (512)
+ .+||.++|.+|++|||+|+|.++++|+|++|+|||||||||+++||+++|||++++++|+|+||||+.+.+-.+
T Consensus 402 d-----~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~ 476 (720)
T TIGR00490 402 D-----LPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVV 476 (720)
T ss_pred H-----HHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccccce
Confidence 5 78999999999999999999999999999999999999999999999999999999999999999998764422
Q ss_pred hhcCCCCccceEEEEeecccc
Q 010392 486 RELGRKEQHSLSIKFQPVAFL 506 (512)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~ 506 (512)
....+.+.+.++|.++|.+.+
T Consensus 477 ~~~~~~~~~~v~l~iePl~~~ 497 (720)
T TIGR00490 477 EGKSPNKHNRFYIVVEPLEES 497 (720)
T ss_pred EEEcCCCcEEEEEEEEECCcc
Confidence 222222336799999998754
No 16
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.6e-61 Score=532.96 Aligned_cols=389 Identities=27% Similarity=0.392 Sum_probs=347.3
Q ss_pred EeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHH
Q 010392 95 IAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERI 172 (512)
Q Consensus 95 vG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 172 (512)
+||+|+|||||+++|+...+.+...+.+. .+++|..+.|+++|+|+......+.|++..+++||||||.+|..++..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999999988766544332 4799999999999999999999999999999999999999999999999
Q ss_pred HHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc----------------
Q 010392 173 LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN---------------- 236 (512)
Q Consensus 173 ~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~---------------- 236 (512)
+..+|++++|+|+..+...++..+|..+...++|+++|+||+|+...+....++++.+.+....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 9999999999999999999999999999999999999999999987766666666665432100
Q ss_pred -------------------------------------------CCc--------------------------ccccccee
Q 010392 237 -------------------------------------------ATD--------------------------EQCDFQAI 247 (512)
Q Consensus 237 -------------------------------------------~~~--------------------------~~~~~pvi 247 (512)
.++ ...-+|++
T Consensus 161 id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~ 240 (668)
T PRK12740 161 VDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVF 240 (668)
T ss_pred EECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 000 00136899
Q ss_pred eeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC-----------------cccccceeeeEEEeeeCCCcEEEEEEE
Q 010392 248 YASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI-----------------EKDGALQMLATNLEYDEHKGRIAIGRL 310 (512)
Q Consensus 248 ~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~-----------------~~~~p~~~~V~~~~~~~~~G~v~~grV 310 (512)
++||++|. |+..||+.|.+++|+|.. +++.|+.++|||+.++++.|+++++||
T Consensus 241 ~gSA~~~~----------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV 310 (668)
T PRK12740 241 CGSALKNK----------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRV 310 (668)
T ss_pred eccccCCc----------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEE
Confidence 99999999 999999999999999952 456789999999999999999999999
Q ss_pred eecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCCe
Q 010392 311 HAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPT 390 (512)
Q Consensus 311 ~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~ 390 (512)
++|+|++||.|++.+.++.+ +|.+|+.++|.+..++++|.|||||++.|++++.+||||++......++++.++.|+
T Consensus 311 ~sG~L~~g~~v~~~~~~~~~---~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~ 387 (668)
T PRK12740 311 YSGTLKKGDTLYNSGTGKKE---RVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPV 387 (668)
T ss_pred eeeEEcCCCEEEeCCCCCcE---EecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcc
Confidence 99999999999999887777 899999999999999999999999999999999999999987666778888899999
Q ss_pred EEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeece
Q 010392 391 VKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGL 470 (512)
Q Consensus 391 ~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~ 470 (512)
++++|+|.+ ++| ..+|.++|.+|.++||+|+|..+++++|++|+|+|||||||+++||+++||+++.+++|
T Consensus 388 ~~~~i~p~~----~~d-----~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p 458 (668)
T PRK12740 388 ISLAIEPKD----KGD-----EEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPP 458 (668)
T ss_pred eEEEEEECC----cch-----HHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCC
Confidence 999999886 455 78999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeccc----chhhhhhcCCCCcc-ceEEEEeeccc
Q 010392 471 WLNFLAKDAG----RCLICRELGRKEQH-SLSIKFQPVAF 505 (512)
Q Consensus 471 ~v~~~e~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~ 505 (512)
+|+||||+.. ...+++++|+++|+ ++++.++|.+.
T Consensus 459 ~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~ 498 (668)
T PRK12740 459 QVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPR 498 (668)
T ss_pred eeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCC
Confidence 9999999875 34589999999995 99999999976
No 17
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=7.8e-60 Score=526.39 Aligned_cols=418 Identities=26% Similarity=0.420 Sum_probs=334.3
Q ss_pred HHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC------
Q 010392 77 AEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN------ 150 (512)
Q Consensus 77 ~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~------ 150 (512)
......+..++++|||+|+||+|+|||||+++|++..+.+.....-..+++|+.++|++||+|+......+.|.
T Consensus 7 ~~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~ 86 (843)
T PLN00116 7 EELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESL 86 (843)
T ss_pred HHHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccc
Confidence 34455666788999999999999999999999999988766554445778999999999999999998888884
Q ss_pred ----------CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC--
Q 010392 151 ----------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS-- 218 (512)
Q Consensus 151 ----------~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~-- 218 (512)
++.++|+|||||.||..++..+++.+|++|+|||+.+|+..+++.+|+.+...++|+++|+||+|+..
T Consensus 87 ~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~ 166 (843)
T PLN00116 87 KDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLE 166 (843)
T ss_pred cccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchh
Confidence 67899999999999999999999999999999999999999999999999999999999999999982
Q ss_pred ---------CCchhhHhhhHHHHHHhcCC--cc----ccccceeeeccccCccC--------------------------
Q 010392 219 ---------ARPDYVINSTFELFIELNAT--DE----QCDFQAIYASGIQGKAG-------------------------- 257 (512)
Q Consensus 219 ---------~~~~~~~~~~~~~~~~~~~~--~~----~~~~pvi~~Sa~~g~~~-------------------------- 257 (512)
+++..++++++..+..+... .. +..-.|+++|++.|+..
T Consensus 167 ~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg 246 (843)
T PLN00116 167 LQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWG 246 (843)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhc
Confidence 44566666666322222100 00 00011233333222100
Q ss_pred --------------C--CC------------------------C---------------------------------CcC
Q 010392 258 --------------L--SP------------------------D---------------------------------NLA 264 (512)
Q Consensus 258 --------------~--~~------------------------~---------------------------------~~~ 264 (512)
. .+ + .+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~ 326 (843)
T PLN00116 247 ENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWL 326 (843)
T ss_pred cceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhc
Confidence 0 00 0 011
Q ss_pred CCchhhHHHHHHhCCCCCC-------------------------cccccceeeeEEEeeeCCCcE-EEEEEEeecccCCC
Q 010392 265 DDLGPLFESIMRCIPGPRI-------------------------EKDGALQMLATNLEYDEHKGR-IAIGRLHAGVLRKG 318 (512)
Q Consensus 265 ~gi~~Ll~~i~~~lp~p~~-------------------------~~~~p~~~~V~~~~~~~~~G~-v~~grV~sG~l~~g 318 (512)
.|...||+.+++++|+|.. +++.|+.++|||+..+++.|+ ++|+|||||+|+.|
T Consensus 327 ~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g 406 (843)
T PLN00116 327 PASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATG 406 (843)
T ss_pred CChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCC
Confidence 2336789999999999941 224689999999999998887 99999999999999
Q ss_pred CEEEEccCC----C--ceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcccc-CCeEecCC--CCCCCCCCCCC-C
Q 010392 319 MEVRVCTSE----D--SCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI-GETIADKV--SGKPLPSIKVE-E 388 (512)
Q Consensus 319 ~~v~~~~~~----~--~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~-Gdtl~~~~--~~~~l~~~~~~-~ 388 (512)
|.|++.+.+ + .....+|.+|+.++|.+.++++++.|||||+|.|+++..+ ||||++.. ...+++++.++ +
T Consensus 407 ~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~ 486 (843)
T PLN00116 407 MKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVS 486 (843)
T ss_pred CEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCC
Confidence 999854332 1 2223488899999999999999999999999999987545 99998776 45667788888 9
Q ss_pred CeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhc--CceEE
Q 010392 389 PTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLW--RYQKN 466 (512)
Q Consensus 389 P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y--~v~~~ 466 (512)
|+++++|+|.+ .+| .+||.++|.++.+|||+|++.. ++|+|++|+|||||||||+++||+++| ||+|+
T Consensus 487 Pv~~~aIeP~~----~~d-----~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~ 556 (843)
T PLN00116 487 PVVRVAVQCKN----ASD-----LPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIK 556 (843)
T ss_pred ceEEEEEEECC----hhh-----HHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEE
Confidence 99999999876 456 7899999999999999999865 899999999999999999999999999 99999
Q ss_pred eeceeEEEEeecccchh-hhhhcCCCCc-cceEEEEeeccc
Q 010392 467 IWGLWLNFLAKDAGRCL-ICRELGRKEQ-HSLSIKFQPVAF 505 (512)
Q Consensus 467 ~~~~~v~~~e~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 505 (512)
+++|+|+||||+.+..- .++... ++| .+++|.++|.+.
T Consensus 557 ~s~p~V~yrETI~~~~~~~~~~~~-~~~~~~v~l~iePl~~ 596 (843)
T PLN00116 557 VSDPVVSFRETVLEKSCRTVMSKS-PNKHNRLYMEARPLEE 596 (843)
T ss_pred EcCCeEEEEecccccccCcEEEec-CCceEEEEEEEEECCH
Confidence 99999999999987432 233222 344 799999999864
No 18
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=6.6e-59 Score=517.84 Aligned_cols=412 Identities=27% Similarity=0.399 Sum_probs=333.2
Q ss_pred HhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC---------
Q 010392 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--------- 150 (512)
Q Consensus 80 ~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--------- 150 (512)
...+.+.+++|||+++||.|+|||||+++|++..+.+.....-..+++|+.++|++||+|+......+.|.
T Consensus 10 ~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~ 89 (836)
T PTZ00416 10 REIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDK 89 (836)
T ss_pred HHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCC
Confidence 34445577899999999999999999999999888765544334678999999999999999988888886
Q ss_pred -CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC----C-------
Q 010392 151 -DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP----S------- 218 (512)
Q Consensus 151 -~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~----~------- 218 (512)
++.++|+|||||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+.+...++|+++|+||+|+. .
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~ 169 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIY 169 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred CCchhhHhhhHHHHHHhcCCc------cccccceeeeccccCccC-----------------------------------
Q 010392 219 ARPDYVINSTFELFIELNATD------EQCDFQAIYASGIQGKAG----------------------------------- 257 (512)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~------~~~~~pvi~~Sa~~g~~~----------------------------------- 257 (512)
+++..++++++..+....... ......+.+.|+..|++.
T Consensus 170 ~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~ 249 (836)
T PTZ00416 170 QNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTK 249 (836)
T ss_pred HHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCC
Confidence 556777777777664221100 000111222333211100
Q ss_pred ----CC-----C------------------------C------Cc-------------CC--C------------chhhH
Q 010392 258 ----LS-----P------------------------D------NL-------------AD--D------------LGPLF 271 (512)
Q Consensus 258 ----~~-----~------------------------~------~~-------------~~--g------------i~~Ll 271 (512)
.+ . + .+ .. + ++.||
T Consensus 250 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Ll 329 (836)
T PTZ00416 250 KWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLL 329 (836)
T ss_pred EEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHH
Confidence 00 0 0 00 00 0 15689
Q ss_pred HHHHHhCCCCCC-------------------------cccccceeeeEEEeeeCCCcE-EEEEEEeecccCCCCEEEEcc
Q 010392 272 ESIMRCIPGPRI-------------------------EKDGALQMLATNLEYDEHKGR-IAIGRLHAGVLRKGMEVRVCT 325 (512)
Q Consensus 272 ~~i~~~lp~p~~-------------------------~~~~p~~~~V~~~~~~~~~G~-v~~grV~sG~l~~g~~v~~~~ 325 (512)
+.|.+++|+|.. ++++|+.++|||+..+++.|+ ++|+|||||+|+.||.|++.+
T Consensus 330 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~ 409 (836)
T PTZ00416 330 EMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQG 409 (836)
T ss_pred HHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeC
Confidence 999999999941 224589999999999999998 899999999999999998644
Q ss_pred CC----Cce--eeeeeeeeEeeecCceeecceecCCCEEEEccCCc--cccCCeEecCCCCCCCCCCCCC-CCeEEEEEE
Q 010392 326 SE----DSC--RYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD--IQIGETIADKVSGKPLPSIKVE-EPTVKMSFS 396 (512)
Q Consensus 326 ~~----~~~--~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~--~~~Gdtl~~~~~~~~l~~~~~~-~P~~~~av~ 396 (512)
.+ .++ ...+|.+|+.++|.+..++++|.|||||+|.|+++ +++| ||++.....+++++.++ +|+++++|+
T Consensus 410 ~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~~~Pv~~vaIe 488 (836)
T PTZ00416 410 PNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSPVVRVAVE 488 (836)
T ss_pred CCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccCCCCeEEEEEE
Confidence 43 111 01148999999999999999999999999999988 8899 99887766777788876 999999999
Q ss_pred ecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhc-CceEEeeceeEEEE
Q 010392 397 INTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLW-RYQKNIWGLWLNFL 475 (512)
Q Consensus 397 ~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y-~v~~~~~~~~v~~~ 475 (512)
|.+ .+| .+||.++|+++.+|||+|++.. ++|+|++|+||||+||||+++||+++| +|+|.+++|+|+||
T Consensus 489 p~~----~~d-----~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yr 558 (836)
T PTZ00416 489 PKN----PKD-----LPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYR 558 (836)
T ss_pred ECC----HHH-----HHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEE
Confidence 886 456 7899999999999999999966 889999999999999999999999999 89999999999999
Q ss_pred eecccc----hhhhhhcCCCCccceEEEEeeccc
Q 010392 476 AKDAGR----CLICRELGRKEQHSLSIKFQPVAF 505 (512)
Q Consensus 476 e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
||+.+. +..++|+|+ ++++|.++|.+.
T Consensus 559 ETI~~~s~~~~~~~~~~~~---~~v~~~~ePl~~ 589 (836)
T PTZ00416 559 ETVTEESSQTCLSKSPNKH---NRLYMKAEPLTE 589 (836)
T ss_pred EEecccccceEEEECCCCC---eeEEEEEEECCH
Confidence 998864 334556554 599999999864
No 19
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-59 Score=471.22 Aligned_cols=369 Identities=36% Similarity=0.507 Sum_probs=318.3
Q ss_pred cccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC---eeEEEEeCC
Q 010392 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND---TKINIIDTP 160 (512)
Q Consensus 84 ~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~---~~i~liDtP 160 (512)
.+.+++||++||.|.++|||||..+|+..++.+... ....+++|....|+|||||+......+.|++ +.+|+||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~-~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTP 133 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN-IGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTP 133 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCC-CchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCC
Confidence 345789999999999999999999999999865433 2347899999999999999999999999998 999999999
Q ss_pred CCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 161 G~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
||.||..++.+.+.+||++|||+||.+|++.||...+..+.+.++.+|.|+||+|+..++++++..++.+.|.....
T Consensus 134 GHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~--- 210 (650)
T KOG0462|consen 134 GHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA--- 210 (650)
T ss_pred CcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999843222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCE
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGME 320 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~ 320 (512)
+++++||++|+ ++.++|++|++.+|+|....+.||++++|+.+.|.+.|.++++||..|.+++||+
T Consensus 211 ----~~i~vSAK~G~----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdk 276 (650)
T KOG0462|consen 211 ----EVIYVSAKTGL----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDK 276 (650)
T ss_pred ----ceEEEEeccCc----------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCE
Confidence 58999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEcc-CCccccCCeEecCCCCCCCCCCCCCCCeEEEEEEecC
Q 010392 321 VRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCG-IDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINT 399 (512)
Q Consensus 321 v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~-l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~av~~~~ 399 (512)
|..+.+++.+ ..++-.|..+..-...++...++|+|++-.+ +++.++||||+......++++.+-.+|...|.| ++.
T Consensus 277 V~~~~t~~~y-ev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMvF-vg~ 354 (650)
T KOG0462|consen 277 VQSAATGKSY-EVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMVF-VGL 354 (650)
T ss_pred EEEeecCcce-EeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCCCCcceEE-ecc
Confidence 9999998875 3344455544454445555666666666655 889999999998763233334333334444445 556
Q ss_pred CCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCC---CeEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEe
Q 010392 400 SPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETA---DTFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLA 476 (512)
Q Consensus 400 ~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t---~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e 476 (512)
.|+.+.| ...+.+++.||..+|.+..+..+..+ ..+.++++|.|||+|+.+||++|||.++-+++|.|.||-
T Consensus 355 fP~dgsd-----~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr~ 429 (650)
T KOG0462|consen 355 FPLDGSD-----YETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPYRV 429 (650)
T ss_pred ccCccch-----hhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCceeeecCCcceEEE
Confidence 7776777 66789999999999999999987654 379999999999999999999999999999999999996
Q ss_pred e
Q 010392 477 K 477 (512)
Q Consensus 477 ~ 477 (512)
.
T Consensus 430 ~ 430 (650)
T KOG0462|consen 430 V 430 (650)
T ss_pred E
Confidence 5
No 20
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-56 Score=440.75 Aligned_cols=363 Identities=30% Similarity=0.466 Sum_probs=322.7
Q ss_pred cccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-----eeEEEEe
Q 010392 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-----TKINIID 158 (512)
Q Consensus 84 ~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-----~~i~liD 158 (512)
...+++||+.|+.|.++|||||..+|+..++...... ..+.++|+++.|++||+||......+.|+. +.++|||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Re-m~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlID 82 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSERE-MRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLID 82 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHH-HHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcC
Confidence 3456899999999999999999999999988765432 247799999999999999999988887763 7899999
Q ss_pred CCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 159 TPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 159 tPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
||||.||..++.+++..|.++|||+||+.|++.||..-...+.+.+.-++.|+||+||+.++++.+..++.+.+. +...
T Consensus 83 TPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iG-id~~ 161 (603)
T COG0481 83 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG-IDAS 161 (603)
T ss_pred CCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhC-CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988762 2222
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKG 318 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g 318 (512)
-.+.+||++|. |++++|++|++.+|+|..+.+.|+.++||+.++|++.|.+++.||+.|++++|
T Consensus 162 ------dav~~SAKtG~----------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~g 225 (603)
T COG0481 162 ------DAVLVSAKTGI----------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKG 225 (603)
T ss_pred ------hheeEecccCC----------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCC
Confidence 26899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE-cc---CCccccCCeEecCCC--CCCCCCCCCCCCeEE
Q 010392 319 MEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV-CG---IDDIQIGETIADKVS--GKPLPSIKVEEPTVK 392 (512)
Q Consensus 319 ~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i-~~---l~~~~~Gdtl~~~~~--~~~l~~~~~~~P~~~ 392 (512)
|+|..+.+|+.+ .|.++..+ .....+++++.||+++.+ ++ +.+++.||||+...+ ..++++.+...|++.
T Consensus 226 dki~~m~tg~~y---~V~evGvf-tP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P~Vf 301 (603)
T COG0481 226 DKIRMMSTGKEY---EVDEVGIF-TPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKPMVF 301 (603)
T ss_pred CEEEEEecCCEE---EEEEEeec-cCCccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcCCceEE
Confidence 999999999988 67776555 357788999999999988 44 568999999985443 367899999999999
Q ss_pred EEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCC---eEEEEEecHHHHHHHHHHHchhcCceEEeec
Q 010392 393 MSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETAD---TFIVSGRGTLHITILIENILPLWRYQKNIWG 469 (512)
Q Consensus 393 ~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~---e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~ 469 (512)
..+.|-. ..+ .+.|.++|.||..+|.+|.++...+.. .+.+..+|.|||||++|||+|+|++++-++.
T Consensus 302 ~GlyPid----~~d-----ye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~Ta 372 (603)
T COG0481 302 AGLYPVD----SDD-----YEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTA 372 (603)
T ss_pred EeecccC----hhH-----HHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEecC
Confidence 9998765 344 678999999999999999998865332 7889999999999999999999999999999
Q ss_pred eeEEEEee
Q 010392 470 LWLNFLAK 477 (512)
Q Consensus 470 ~~v~~~e~ 477 (512)
|.|.|+=.
T Consensus 373 PsV~Y~v~ 380 (603)
T COG0481 373 PSVVYKVE 380 (603)
T ss_pred CceEEEEE
Confidence 99999865
No 21
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-55 Score=421.79 Aligned_cols=395 Identities=25% Similarity=0.344 Sum_probs=336.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
.++|||+++.|.++||||..+++++..+.+...+.+. +++.|+...|++||+|+.+....+.|+++++++||||||.|
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 4689999999999999999999999988877776665 78999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHH----------
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE---------- 234 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~---------- 234 (512)
|.-++++.++..|+++.|+|++.|++.|+..+|++..++++|.++++||||...++++..++.+++.+..
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~ 194 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIG 194 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999888888887765420
Q ss_pred -----------------h-c-CCc--------cc----------------------------------------------
Q 010392 235 -----------------L-N-ATD--------EQ---------------------------------------------- 241 (512)
Q Consensus 235 -----------------~-~-~~~--------~~---------------------------------------------- 241 (512)
+ + ++. ..
T Consensus 195 eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i 274 (753)
T KOG0464|consen 195 EAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKI 274 (753)
T ss_pred ccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccccc
Confidence 0 0 000 00
Q ss_pred ----------------cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC-------cccccceeeeEEEee
Q 010392 242 ----------------CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI-------EKDGALQMLATNLEY 298 (512)
Q Consensus 242 ----------------~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~-------~~~~p~~~~V~~~~~ 298 (512)
.-.|+.++||.++. |+++||+++.-++|+|.. .....+.++.|++.+
T Consensus 275 ~a~elksai~~lt~aq~a~~i~cgsaiknk----------giqplldavtmylpspeernyeflqwykddlcalafkvlh 344 (753)
T KOG0464|consen 275 DAEELKSAIHELTCAQKAAPILCGSAIKNK----------GIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLH 344 (753)
T ss_pred CHHHHHHHHHHHhhhhhhcceehhhhhccc----------CccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhc
Confidence 01588999999988 999999999999999974 234567889999999
Q ss_pred eCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCC-
Q 010392 299 DEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVS- 377 (512)
Q Consensus 299 ~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~- 377 (512)
|+..|.++|.|||+|+|+....|++....-.+ .+.++|.....+...++++.||+|....|++...+|||+.....
T Consensus 345 dkqrg~l~fmriysgsi~~~~ai~nin~~~se---~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivaskas 421 (753)
T KOG0464|consen 345 DKQRGPLSFMRIYSGSIHNNLAIFNINGMCSE---GILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASKAS 421 (753)
T ss_pred ccccCceeEEEEecccccCceeeeeccccccc---chHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEecchh
Confidence 99999999999999999999999998877666 88899998888999999999999999999999999999965321
Q ss_pred -----------------------CCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEEC
Q 010392 378 -----------------------GKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADG 434 (512)
Q Consensus 378 -----------------------~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~ 434 (512)
...+..++.|.|++...++|.+- +. ...+-.+|.-+..|||++++..|
T Consensus 422 a~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~----~k-----~~d~ehale~lqredpslkir~d 492 (753)
T KOG0464|consen 422 AEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSL----RK-----LNDFEHALECLQREDPSLKIRFD 492 (753)
T ss_pred HHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCccc----cc-----chhHHHHHHHHhccCCceeEEec
Confidence 12256789999999999987541 11 23455677777889999999999
Q ss_pred CCCCeEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEeecccchh----hhhhcCCCCc-cceEEEEeec
Q 010392 435 ETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLAKDAGRCL----ICRELGRKEQ-HSLSIKFQPV 503 (512)
Q Consensus 435 ~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e~~~~~~~----~~~~~~~~~~-~~~~~~~~~~ 503 (512)
++++|+++.||||||+|++-+|++|+||+++.+|++||+|||+.--+.- .-+-+|-|.. -.|..+..|-
T Consensus 493 ~dsgqtil~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~ 566 (753)
T KOG0464|consen 493 PDSGQTILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLE 566 (753)
T ss_pred CCCCceEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeec
Confidence 9999999999999999999999999999999999999999999764322 4556666655 4444444443
No 22
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-50 Score=394.52 Aligned_cols=365 Identities=22% Similarity=0.358 Sum_probs=317.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee------eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG 161 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~------~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG 161 (512)
+-|+++||.|+++|||||.+.|+...+.+...+++. ....|-++.|++|||++.++...+.|.++.+||+||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 347799999999999999999999888887777665 45789999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHH--------
Q 010392 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFI-------- 233 (512)
Q Consensus 162 ~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~-------- 233 (512)
|+||...+.+.+..+|.++.|||+..|++.||+++++-|+-+++|++-++||+|+...++-+.++++.+.+.
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitW 170 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPITW 170 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecccc
Confidence 999999999999999999999999999999999999999999999999999999998888888888887552
Q ss_pred HhcCCc------------------------c----------------------------------------------ccc
Q 010392 234 ELNATD------------------------E----------------------------------------------QCD 243 (512)
Q Consensus 234 ~~~~~~------------------------~----------------------------------------------~~~ 243 (512)
.++... . ...
T Consensus 171 PIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~ 250 (528)
T COG4108 171 PIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGEL 250 (528)
T ss_pred cccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCc
Confidence 000000 0 001
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC---------cccccceeeeEEEee---eCCCcEEEEEEEe
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI---------EKDGALQMLATNLEY---DEHKGRIAIGRLH 311 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~---------~~~~p~~~~V~~~~~---~~~~G~v~~grV~ 311 (512)
.|||++||+++. |++.+|+.++++.|+|.. ..+..|.++|||+.. .+++.+++|.||.
T Consensus 251 TPVFFGSAl~NF----------GV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~ 320 (528)
T COG4108 251 TPVFFGSALGNF----------GVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVC 320 (528)
T ss_pred cceEehhhhhcc----------CHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEec
Confidence 599999999999 999999999999999963 234569999999864 3578899999999
Q ss_pred ecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCCeE
Q 010392 312 AGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTV 391 (512)
Q Consensus 312 sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~ 391 (512)
||.+..|+++...++|+.+ ++..-..+++..++.+++|.||||++|.+...+++||||+.. ....+++++.-.|-+
T Consensus 321 SGkferGMkv~h~rtGK~~---~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~G-e~l~f~giP~FaPE~ 396 (528)
T COG4108 321 SGKFERGMKVTHVRTGKDV---KLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEG-EKLKFTGIPNFAPEL 396 (528)
T ss_pred cccccCCceeeeeecCCce---EecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecC-ceeeecCCCCCCHHH
Confidence 9999999999999999998 888877788999999999999999999888889999999986 446778888777888
Q ss_pred EEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeecee
Q 010392 392 KMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLW 471 (512)
Q Consensus 392 ~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~ 471 (512)
.+.+..++ |++ ..++..+|.+|++|.. .++.....+++.+|...|.||+||+.+||+.+|||++.+.+..
T Consensus 397 frrvr~kd-~~K--------~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve~~~e~~~ 466 (528)
T COG4108 397 FRRVRLKD-PLK--------QKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVEAVFEPVN 466 (528)
T ss_pred HHHHhcCC-hHH--------HHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhhhCCeEEEeecc
Confidence 88887664 322 2468899999999887 7777777788999999999999999999999999999998887
Q ss_pred EEEEe
Q 010392 472 LNFLA 476 (512)
Q Consensus 472 v~~~e 476 (512)
++..-
T Consensus 467 ~~~aR 471 (528)
T COG4108 467 FSTAR 471 (528)
T ss_pred ceEEE
Confidence 76543
No 23
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-48 Score=385.26 Aligned_cols=418 Identities=24% Similarity=0.364 Sum_probs=333.7
Q ss_pred HHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-------
Q 010392 78 EKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN------- 150 (512)
Q Consensus 78 ~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~------- 150 (512)
..+..+.+..++||+.++.|+++|||||..+|....+.+.....-+.+++|..+.|++||+||.+....+.+.
T Consensus 8 ~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~ 87 (842)
T KOG0469|consen 8 QVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLK 87 (842)
T ss_pred HHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHH
Confidence 3445666788999999999999999999999999988877666667899999999999999999987766432
Q ss_pred ---------CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc
Q 010392 151 ---------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP 221 (512)
Q Consensus 151 ---------~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~ 221 (512)
+.-+|+||.|||.||..++-.+++..|++|+|+|+.+|+..||+.++.++....+.-++|+||+|+.--+.
T Consensus 88 ~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLEL 167 (842)
T KOG0469|consen 88 FIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLEL 167 (842)
T ss_pred HhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhh
Confidence 35799999999999999999999999999999999999999999999999888887788999999863333
Q ss_pred hhhHhhhHHHHHHhcCCc---------c-cc-------ccceeeeccccCccCC--------------------------
Q 010392 222 DYVINSTFELFIELNATD---------E-QC-------DFQAIYASGIQGKAGL-------------------------- 258 (512)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~---------~-~~-------~~pvi~~Sa~~g~~~~-------------------------- 258 (512)
+-..+++.+.|+.....- . .. .-.|-++|+++||+..
T Consensus 168 q~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~ 247 (842)
T KOG0469|consen 168 QLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGD 247 (842)
T ss_pred cCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcc
Confidence 333344444443221110 0 00 0124567777776521
Q ss_pred ---CCC------------------------------------------------------------------------Cc
Q 010392 259 ---SPD------------------------------------------------------------------------NL 263 (512)
Q Consensus 259 ---~~~------------------------------------------------------------------------~~ 263 (512)
+++ .+
T Consensus 248 ~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~w 327 (842)
T KOG0469|consen 248 NFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKW 327 (842)
T ss_pred cccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHh
Confidence 000 01
Q ss_pred CCCchhhHHHHHHhCCCCC-------------------------CcccccceeeeEEEeeeCCCc-EEEEEEEeecccCC
Q 010392 264 ADDLGPLFESIMRCIPGPR-------------------------IEKDGALQMLATNLEYDEHKG-RIAIGRLHAGVLRK 317 (512)
Q Consensus 264 ~~gi~~Ll~~i~~~lp~p~-------------------------~~~~~p~~~~V~~~~~~~~~G-~v~~grV~sG~l~~ 317 (512)
...-+.||+.|.-++|+|. |+++.|+.++|.|.......| ..+|||||||++..
T Consensus 328 LPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~ 407 (842)
T KOG0469|consen 328 LPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFT 407 (842)
T ss_pred cchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceecc
Confidence 1112467888888999984 578899999999998777776 78999999999999
Q ss_pred CCEEEEccCC----Cc--eeeeeeeeeEeeecCceeecceecCCCEEEEccCCc-cccCCeEecCCCCCCCCCCCCC-CC
Q 010392 318 GMEVRVCTSE----DS--CRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD-IQIGETIADKVSGKPLPSIKVE-EP 389 (512)
Q Consensus 318 g~~v~~~~~~----~~--~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~-~~~Gdtl~~~~~~~~l~~~~~~-~P 389 (512)
|+++++.+.+ ++ .....|.+...++|+..++++...||+|+++.|+|+ +..+.||+......-+..++|. .|
T Consensus 408 G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFSVSP 487 (842)
T KOG0469|consen 408 GLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFSVSP 487 (842)
T ss_pred CcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEEEeeccc
Confidence 9999997665 11 111123444467899999999999999999999986 5567788776655556667765 49
Q ss_pred eEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhc-CceEEee
Q 010392 390 TVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLW-RYQKNIW 468 (512)
Q Consensus 390 ~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y-~v~~~~~ 468 (512)
++++|+++++ +.| -.||.++|.||+..||...+..+ +++|++|.|-||||||||+.+|++.| ++.+..+
T Consensus 488 VV~VAVe~Kn----p~D-----LpKLvEGLkrLakSDP~v~~~~~-esGehiiAgaGeLHLEICLkDLeedhA~iPlk~s 557 (842)
T KOG0469|consen 488 VVRVAVEAKN----PAD-----LPKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPLKKS 557 (842)
T ss_pred eEEEEEecCC----hhh-----hHHHHHHHHHHhccCCeEEEEec-cCCceEEeccchhhHHHHHhhHhhcccCCceecC
Confidence 9999999887 556 67999999999999999999986 57899999999999999999999999 5999999
Q ss_pred ceeEEEEeeccc-chhhhhhcCCCCccceEEEEeeccc
Q 010392 469 GLWLNFLAKDAG-RCLICRELGRKEQHSLSIKFQPVAF 505 (512)
Q Consensus 469 ~~~v~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
+|.|+||||..- ....|-.-.+++-+.+.|.++|.+.
T Consensus 558 dPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~ 595 (842)
T KOG0469|consen 558 DPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDD 595 (842)
T ss_pred CCeeeeecccccccchhhhccCCcccceeEEecccCCc
Confidence 999999999775 5568888889999999999999876
No 24
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-43 Score=360.19 Aligned_cols=421 Identities=24% Similarity=0.312 Sum_probs=328.1
Q ss_pred hhHHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc-ceeeeeeccchhhhhcceeEEeeeeEEEEC---
Q 010392 75 TAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ-TVKERIMDSNDLERERGITILSKNTSITYN--- 150 (512)
Q Consensus 75 ~~~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~-~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--- 150 (512)
........+..+..++||+++||-++|||+|+..|...++...... ...-++.|....|++||++|......+-..
T Consensus 114 ~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~ 193 (971)
T KOG0468|consen 114 DLEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSK 193 (971)
T ss_pred hHHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCc
Confidence 3566677788899999999999999999999999999877432221 112479999999999999999988776554
Q ss_pred --CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc-------
Q 010392 151 --DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP------- 221 (512)
Q Consensus 151 --~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~------- 221 (512)
.+-+|++|||||.+|.+++...++.+|++++|||+.+|+.-++...++.+.+.++|+.+|+||+|+...++
T Consensus 194 ~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DA 273 (971)
T KOG0468|consen 194 GKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDA 273 (971)
T ss_pred CceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999863211
Q ss_pred ----hhhHhhhHHHHHHhcCCccc----cccceeeeccccCccCCC-----------------------C----------
Q 010392 222 ----DYVINSTFELFIELNATDEQ----CDFQAIYASGIQGKAGLS-----------------------P---------- 260 (512)
Q Consensus 222 ----~~~~~~~~~~~~~~~~~~~~----~~~pvi~~Sa~~g~~~~~-----------------------~---------- 260 (512)
..+++++...+..+...+.. ..-.|++.|++.|....- +
T Consensus 274 Y~KLrHii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktr 353 (971)
T KOG0468|consen 274 YYKLRHIIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTR 353 (971)
T ss_pred HHHHHHHHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhcccccccccc
Confidence 12223333222222111111 111245555544432100 0
Q ss_pred -------C--------------------------------------------CcCCCchh---------------hHHHH
Q 010392 261 -------D--------------------------------------------NLADDLGP---------------LFESI 274 (512)
Q Consensus 261 -------~--------------------------------------------~~~~gi~~---------------Ll~~i 274 (512)
. +.+-++.+ +.+++
T Consensus 354 kF~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~ 433 (971)
T KOG0468|consen 354 KFVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMP 433 (971)
T ss_pred ccccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhhHhh
Confidence 0 01111222 45677
Q ss_pred HHhCCCCC-------------------------CcccccceeeeEEEee-eCCCcEEEEEEEeecccCCCCEEEEccCC-
Q 010392 275 MRCIPGPR-------------------------IEKDGALQMLATNLEY-DEHKGRIAIGRLHAGVLRKGMEVRVCTSE- 327 (512)
Q Consensus 275 ~~~lp~p~-------------------------~~~~~p~~~~V~~~~~-~~~~G~v~~grV~sG~l~~g~~v~~~~~~- 327 (512)
.+++|+|. ++.++|+...+.+.+. +...-..+++||+||+++.|+.|.+...+
T Consensus 434 v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny 513 (971)
T KOG0468|consen 434 VEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENY 513 (971)
T ss_pred HhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccc
Confidence 77888885 3456788888888775 44556889999999999999999998775
Q ss_pred -----CceeeeeeeeeEeeecCceeecceecCCCEEEEccCCc-cccCCeEecCCC---CCCCCCCC-CCCCeEEEEEEe
Q 010392 328 -----DSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD-IQIGETIADKVS---GKPLPSIK-VEEPTVKMSFSI 397 (512)
Q Consensus 328 -----~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~-~~~Gdtl~~~~~---~~~l~~~~-~~~P~~~~av~~ 397 (512)
+.+....|++|+.+.++++.+|+.|.||.+|.|.|+++ +....||++.+. ...+++.. .+.|+++++++|
T Consensus 514 ~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP 593 (971)
T KOG0468|consen 514 SLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEP 593 (971)
T ss_pred cCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEecc
Confidence 34445689999999999999999999999999999985 666788876542 34456655 567999999976
Q ss_pred cCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcC-ceEEeeceeEEEEe
Q 010392 398 NTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWR-YQKNIWGLWLNFLA 476 (512)
Q Consensus 398 ~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~-v~~~~~~~~v~~~e 476 (512)
.+ ++| -.|+.++|.|....-|++.. .-++++|++|.|-|||+|+|++++||..|. +|+++++|.|.|.|
T Consensus 594 ~n----PsE-----LPKmldgLrKinKsYPl~~t-kVEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~E 663 (971)
T KOG0468|consen 594 LN----PSE-----LPKMLDGLRKINKSYPLVIT-KVEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCE 663 (971)
T ss_pred CC----hhh-----hhHHHHHHHhhcccCCcEEE-ehhhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEE
Confidence 54 777 68999999999999997754 447788999999999999999999999996 99999999999999
Q ss_pred e-cccchhhhhhcCCCCccceEEEEeeccc
Q 010392 477 K-DAGRCLICRELGRKEQHSLSIKFQPVAF 505 (512)
Q Consensus 477 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
| ...+++.|++++++++++++|..||.+-
T Consensus 664 t~vetssikcfaetpnkknkItmiaEPlek 693 (971)
T KOG0468|consen 664 TVVETSSIKCFAETPNKKNKITMIAEPLEK 693 (971)
T ss_pred eeecccchhhhccCCCccCceeeeechhhh
Confidence 9 4569999999999999999999999854
No 25
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-41 Score=333.80 Aligned_cols=285 Identities=25% Similarity=0.331 Sum_probs=245.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc---------------cceeeeeeccchhhhhcceeEEeeeeEEEEC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN---------------QTVKERIMDSNDLERERGITILSKNTSITYN 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~---------------~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 150 (512)
.+...|++++||+++|||||+.+|++..+.+... .....|++|..++||+||+|++.....++.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4567899999999999999999999988765431 1223899999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCC-cEEEEEeccCCCCCC--
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR-- 220 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-------~~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~-- 220 (512)
.+.++|+|+|||.||...+.....+||.+||||||..+ +..|+++++-.++..|+ .+||++||||+.+++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 99999999999999999999999999999999999987 88999999999999998 589999999998764
Q ss_pred -chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCC-CcCCCch-hhHHHHHHhCCCCCCcccccceeeeEEEe
Q 010392 221 -PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD-NLADDLG-PLFESIMRCIPGPRIEKDGALQMLATNLE 297 (512)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~-~~~~gi~-~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~ 297 (512)
++++.+++..+++.++...+ +++|+++||.+|.|+.+.. ...|.-. .||++| +.+..|....+.||++.|.+++
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~--~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaL-d~~~~p~~~~d~Plr~pI~~v~ 240 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPK--DVPFIPISGFKGDNLTKKSENMPWYKGPTLLEAL-DQLEPPERPLDKPLRLPIQDVY 240 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCcc--CCeEEecccccCCcccccCcCCcCccCChHHHHH-hccCCCCCCCCCCeEeEeeeEE
Confidence 56667777776666666543 6889999999999988765 3334333 455555 4888898889999999999999
Q ss_pred eeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCeEe
Q 010392 298 YDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIA 373 (512)
Q Consensus 298 ~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~ 373 (512)
...+.|++..|||.+|.|++||.|++.|.+... .|++| ..+.++++.+.|||.|.+ .++ +|+++||+++
T Consensus 241 ~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~---evksi----e~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~ 313 (428)
T COG5256 241 SISGIGTVPVGRVESGVIKPGQKVTFMPAGVVG---EVKSI----EMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIG 313 (428)
T ss_pred EecCCceEEEEEEeeeeeccCCEEEEecCcceE---EEeee----eecccccccCCCCCeEEEEecCCchhccCCccEec
Confidence 999999999999999999999999999998665 89998 456889999999999998 454 5799999999
Q ss_pred cCCCCCC
Q 010392 374 DKVSGKP 380 (512)
Q Consensus 374 ~~~~~~~ 380 (512)
+.+++..
T Consensus 314 ~~~n~~t 320 (428)
T COG5256 314 HSDNPPT 320 (428)
T ss_pred cCCCCcc
Confidence 9887543
No 26
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.9e-40 Score=344.62 Aligned_cols=286 Identities=27% Similarity=0.368 Sum_probs=237.6
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
..+..+||+++||+|+|||||+++|++..+.+.....-...++|..++|+++|+|++.....+.+++.+++|||||||.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 45678999999999999999999999876654332222345789999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--chhhHhhhHHHHHHhcCCccc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 241 (512)
|...+...+..+|++++|+|+.+|...++++++..+...++| +++++||+|+.+.+ ++.+.+++.+.+..++...
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~-- 234 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG-- 234 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc--
Confidence 999999999999999999999999999999999999999998 77899999997532 2334456666666655432
Q ss_pred cccceeeeccccCccCCCC--------CCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeec
Q 010392 242 CDFQAIYASGIQGKAGLSP--------DNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAG 313 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~--------~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG 313 (512)
..+|++++||.+|++.... ..|..++..|++.|.+.+|.|..+.+.||++.|+++|.+++.|+|+.|+|.+|
T Consensus 235 ~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG 314 (478)
T PLN03126 235 DDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERG 314 (478)
T ss_pred CcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcC
Confidence 3689999999999765321 12333567899999988877877778999999999999999999999999999
Q ss_pred ccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC--ccccCCeEecCCC
Q 010392 314 VLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKVS 377 (512)
Q Consensus 314 ~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~--~~~~Gdtl~~~~~ 377 (512)
.|++||.|++.|.+.. ...+|++|. .++.++++|.|||.|+| .+++ ++++|++|++++.
T Consensus 315 ~i~~Gd~v~i~p~~~~-~~~~VksI~----~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~ 377 (478)
T PLN03126 315 TVKVGETVDIVGLRET-RSTTVTGVE----MFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGS 377 (478)
T ss_pred eEecCCEEEEecCCCc-eEEEEEEEE----ECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCCC
Confidence 9999999999987642 224899995 44678999999999999 5554 6999999998753
No 27
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.7e-40 Score=344.75 Aligned_cols=281 Identities=22% Similarity=0.299 Sum_probs=236.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc--c------------e-eeeeeccchhhhhcceeEEeeeeEEEEC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ--T------------V-KERIMDSNDLERERGITILSKNTSITYN 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~--~------------~-~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 150 (512)
.+..+||+++||.|+|||||+.+|++..+...... . . ..+++|..++|++||+|++.....+.++
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35678999999999999999999999877554322 0 0 1468999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCc-------hhHHHHHHHHHHcCCc-EEEEEeccCCC-----
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGHA-VVVVVNKIDRP----- 217 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~-------~~~~~~l~~~~~~~~p-~ivviNK~Dl~----- 217 (512)
++.++|+|||||.+|...+..++..+|++|+|+|+.+|.. .++++++..+...++| +|+++||||+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 9999999999999999999999999999999999998743 6999999999999996 68899999986
Q ss_pred CCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCC-cCCCc-hhhHHHHHHhCCCCCCcccccceeeeEE
Q 010392 218 SARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDL-GPLFESIMRCIPGPRIEKDGALQMLATN 295 (512)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~-~~~gi-~~Ll~~i~~~lp~p~~~~~~p~~~~V~~ 295 (512)
..+++++.+++.++++..+...+ .++++++||++|+|+.+... ..|.- ..|++.|. .++.|....+.||++.|.+
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~~--~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~-~i~~p~~~~~~plr~~I~~ 240 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNPD--KIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALD-QINEPKRPSDKPLRLPLQD 240 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcc--cceEEEEeccccccccccccCCcccchHHHHHHHh-hcCCCccccCCCcEEEEEE
Confidence 23466778888888877765432 46899999999998876432 23322 34666664 5777777788999999999
Q ss_pred EeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCe
Q 010392 296 LEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGET 371 (512)
Q Consensus 296 ~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdt 371 (512)
++..++.|+++.|||.+|.|++||.|.+.|.+... +|++|. .++.++++|.|||.|++ .++ +++++|++
T Consensus 241 v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~---~VksI~----~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~v 313 (447)
T PLN00043 241 VYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTT---EVKSVE----MHHESLQEALPGDNVGFNVKNVAVKDLKRGYV 313 (447)
T ss_pred EEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEE---EEEEEE----ECCeEeCEecCCCeEEEEECCCCHhhCCCccE
Confidence 99999999999999999999999999999998765 899994 45679999999999998 455 47999999
Q ss_pred EecCC
Q 010392 372 IADKV 376 (512)
Q Consensus 372 l~~~~ 376 (512)
|++..
T Consensus 314 l~~~~ 318 (447)
T PLN00043 314 ASNSK 318 (447)
T ss_pred EccCC
Confidence 99863
No 28
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=4.9e-40 Score=341.26 Aligned_cols=285 Identities=26% Similarity=0.379 Sum_probs=237.0
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
..+..+||+++||+|+|||||+++|++..+............+|..+.|+++|+|++.....+.+++..++|+|||||.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 35568999999999999999999999876654333222345789999999999999999888888899999999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--chhhHhhhHHHHHHhcCCccc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 241 (512)
|...+..++..+|++++|+|+.+|+..++++++..+...++| +|+++||+|+.+.. ++...+++.+.+..++...
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~-- 165 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG-- 165 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC--
Confidence 999999999999999999999999999999999999999999 77899999997532 2334456677776655432
Q ss_pred cccceeeeccccCccCCCCC--------CcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeec
Q 010392 242 CDFQAIYASGIQGKAGLSPD--------NLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAG 313 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~--------~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG 313 (512)
..+|++++||++|+|..... .|..++..|++.|.+.+|.|..+.+.||+++|++++.+++.|++++|||++|
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG 245 (409)
T CHL00071 166 DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERG 245 (409)
T ss_pred CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecC
Confidence 25799999999999765433 2333678999999999988888888999999999999999999999999999
Q ss_pred ccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC--ccccCCeEecCC
Q 010392 314 VLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKV 376 (512)
Q Consensus 314 ~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~--~~~~Gdtl~~~~ 376 (512)
+|+.||.|.+.|.+.. ...+|++|.. +..++++|.|||+|++ .+++ ++++||+|++++
T Consensus 246 ~l~~Gd~v~i~p~~~~-~~~~VksI~~----~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 246 TVKVGDTVEIVGLRET-KTTTVTGLEM----FQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred EEeeCCEEEEeeCCCC-cEEEEEEEEE----cCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 9999999998764221 1238999954 4468999999999987 4654 799999999875
No 29
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=5.9e-40 Score=338.99 Aligned_cols=282 Identities=28% Similarity=0.382 Sum_probs=232.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+..+||+++||+|+|||||+++|++.............+.+|.+++|+++|+|++.....+.+++..++|||||||.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45689999999999999999999996543221111111346899999999999999988888888889999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--chhhHhhhHHHHHHhcCCcccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
...+...+..+|++++|+|+.+|+..++++++..+...++| +|+|+||+|+.+.+ .+.+.+++.+.+...+... .
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~--~ 166 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG--D 166 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc--C
Confidence 99999999999999999999999999999999999999998 67899999987422 2223446666666555432 2
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEE
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~ 322 (512)
.+|++++||++|.+.. ..+..++..|++.+.+.+|.|..+.++||+++|++++.+++.|++++|||.+|+|+.||.|+
T Consensus 167 ~~~ii~vSa~~g~~~~--~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~ 244 (394)
T PRK12736 167 DIPVIRGSALKALEGD--PKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVE 244 (394)
T ss_pred CccEEEeeccccccCC--CcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEE
Confidence 4689999999985432 23445789999999999998888888999999999999999999999999999999999999
Q ss_pred EccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC--ccccCCeEecCC
Q 010392 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKV 376 (512)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~--~~~~Gdtl~~~~ 376 (512)
+.|.+.. ...+|++|. .++.++++|.|||++++ .+++ ++++|++||+++
T Consensus 245 i~p~~~~-~~~~V~sI~----~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 245 IVGIKET-QKTVVTGVE----MFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred EecCCCC-eEEEEEEEE----ECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 9887321 124899994 45678999999999987 6664 799999999875
No 30
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.3e-39 Score=339.77 Aligned_cols=281 Identities=23% Similarity=0.309 Sum_probs=235.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc--------------ce-eeeeeccchhhhhcceeEEeeeeEEEEC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ--------------TV-KERIMDSNDLERERGITILSKNTSITYN 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~--------------~~-~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 150 (512)
.+...||+++||.|+|||||+++|++..+.+.... .. -.+++|..++|++||+|++.....+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 34678999999999999999999999877654322 11 1367999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCc-------hhHHHHHHHHHHcCCc-EEEEEeccCCCC----
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGHA-VVVVVNKIDRPS---- 218 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~-------~~~~~~l~~~~~~~~p-~ivviNK~Dl~~---- 218 (512)
++.++|+|||||.+|...+...+..+|++++|||+.+|++ .|++++|..+...++| +|+++||||+..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~ 163 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYS 163 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhh
Confidence 9999999999999999999999999999999999999974 7999999999999997 578999999532
Q ss_pred -CCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCC-cCCCc-hhhHHHHHHhCCCCCCcccccceeeeEE
Q 010392 219 -ARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDL-GPLFESIMRCIPGPRIEKDGALQMLATN 295 (512)
Q Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~-~~~gi-~~Ll~~i~~~lp~p~~~~~~p~~~~V~~ 295 (512)
++++++.+++.+.+...+... ..+|++++||++|.|+.+... ..|.- ..|++.|. .++.|....+.||++.|++
T Consensus 164 ~~~~~~i~~~i~~~l~~~g~~~--~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~-~~~~~~~~~~~p~r~~I~~ 240 (446)
T PTZ00141 164 QERYDEIKKEVSAYLKKVGYNP--EKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALD-TLEPPKRPVDKPLRLPLQD 240 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc--ccceEEEeecccCCCcccCCCCCcccchHHHHHHHh-CCCCCCcCCCCCeEEEEEE
Confidence 446777788888887666532 258999999999998875432 22322 35777764 4566767778999999999
Q ss_pred EeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCe
Q 010392 296 LEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGET 371 (512)
Q Consensus 296 ~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdt 371 (512)
++..++.|+++.|+|.+|+|+.||.|.+.|.+... +|++| ..++.++++|.|||.|++ .++ +++++||+
T Consensus 241 v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~---~VksI----~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~v 313 (446)
T PTZ00141 241 VYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTT---EVKSV----EMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYV 313 (446)
T ss_pred EEecCCceEEEEEEEEcceEecCCEEEEccCCcEE---EEEEE----EecCcccCEECCCCEEEEEECCCCHHHcCCceE
Confidence 99999999999999999999999999999998765 89999 455678999999999999 444 36999999
Q ss_pred EecCC
Q 010392 372 IADKV 376 (512)
Q Consensus 372 l~~~~ 376 (512)
|++..
T Consensus 314 l~~~~ 318 (446)
T PTZ00141 314 ASDSK 318 (446)
T ss_pred EecCC
Confidence 99864
No 31
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.9e-39 Score=333.12 Aligned_cols=284 Identities=25% Similarity=0.352 Sum_probs=233.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+...||+++||+|+|||||+++|++.............+.+|.+++|+++|+|++.....+.+++..++|||||||.+|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 45678999999999999999999998533221111111347899999999999999988888888889999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEE-EEEeccCCCCCC--chhhHhhhHHHHHHhcCCcccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~i-vviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
...+...+..+|++++|+|+.++...++++++..+...++|.+ +++||+|+.+.. ++.+.+++.+++..++... .
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~--~ 166 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG--D 166 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc--C
Confidence 9999999999999999999999999999999999999999966 579999997421 2233345666665544321 2
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEE
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~ 322 (512)
.+|++++||++|+|......+..++..|++.|.+.+|.|..+.++||+++|++++..++.|+++.|+|.+|+|+.||.|+
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~ 246 (396)
T PRK12735 167 DTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVE 246 (396)
T ss_pred ceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEE
Confidence 47899999999988655445556789999999999998888888999999999999999999999999999999999999
Q ss_pred EccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCeEecCC
Q 010392 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKV 376 (512)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~~~~ 376 (512)
+.|.+.. ...+|++|. .+++++++|.|||++++ .++ +++++|++||+++
T Consensus 247 i~p~~~~-~~~~VksI~----~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 247 IVGIKET-QKTTVTGVE----MFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred EecCCCC-eEEEEEEEE----ECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 9986421 123899984 45679999999999999 566 4799999999875
No 32
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.5e-39 Score=333.71 Aligned_cols=280 Identities=26% Similarity=0.351 Sum_probs=229.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.++.+||+++||+|+|||||+++|++.............+.+|..++|+++|+|++.....+.+++.+++|||||||.+|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 45678999999999999999999986532211111112457899999999999999988888888889999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEE-EEEeccCCCCCC--chhhHhhhHHHHHHhcCCcccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~i-vviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
...+...+..+|++++|+|+.+|...++++++..+...++|.+ +++||+|+.+.+ .+.+.+++.+.+...+... .
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~--~ 166 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG--D 166 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc--c
Confidence 9999999999999999999999999999999999999999865 689999987532 2223345666665554322 2
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEE
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~ 322 (512)
.+|++++||++|.++. ..|..++..|+++|.+.+|.|..+.+.||+++|++++.+++.|++++|+|.+|+|++||.|+
T Consensus 167 ~~~ii~vSa~~g~~g~--~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~ 244 (394)
T TIGR00485 167 DTPIIRGSALKALEGD--AEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVE 244 (394)
T ss_pred CccEEECccccccccC--CchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEE
Confidence 4789999999986443 23445678899999988888888888999999999999999999999999999999999999
Q ss_pred EccC--CCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCeEecCC
Q 010392 323 VCTS--EDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKV 376 (512)
Q Consensus 323 ~~~~--~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~~~~ 376 (512)
+.|. +... +|++|.. ++.++++|.|||+|+| .++ +++++||+|++++
T Consensus 245 i~p~~~~~~~---~VksI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 245 IVGLKDTRKT---TVTGVEM----FRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred EecCCCCcEE---EEEEEEE----CCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 9875 3343 8999953 4678999999999987 566 4699999999874
No 33
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=6.6e-39 Score=331.16 Aligned_cols=284 Identities=25% Similarity=0.352 Sum_probs=233.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+...||+++||+|+|||||+++|++...............+|..++|+++|+|++.....+.+++..++|+|||||.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 45678999999999999999999998532211111112347899999999999999998888888899999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEE-EEEeccCCCCCC--chhhHhhhHHHHHHhcCCcccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~i-vviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
...+...+..+|++++|+|+.+|+..++++++..+...++|.+ +++||+|+.... ++...+++.+.+..++... .
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~--~ 166 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG--D 166 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc--c
Confidence 9999999999999999999999999999999999999999976 689999997421 2234456666666555421 3
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEE
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~ 322 (512)
.+|++++||++|.+......|..++..|+++|.+.+|.|....+.||++.|.+++..++.|+++.|+|.+|+|++||.|.
T Consensus 167 ~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~ 246 (396)
T PRK00049 167 DTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 246 (396)
T ss_pred CCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEE
Confidence 57899999999876433345556788999999999998887888999999999999999999999999999999999999
Q ss_pred EccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCeEecCC
Q 010392 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKV 376 (512)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~~~~ 376 (512)
+.|.+. ....+|++|. .+++++++|.|||+|++ .++ +++++|++||+++
T Consensus 247 i~p~~~-~~~~~VksI~----~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 247 IVGIRD-TQKTTVTGVE----MFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred EeecCC-CceEEEEEEE----ECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 987631 1224899994 45678999999999999 566 4799999999865
No 34
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.1e-38 Score=333.79 Aligned_cols=282 Identities=25% Similarity=0.331 Sum_probs=233.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc------------cc---eeeeeeccchhhhhcceeEEeeeeEEEEC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------QT---VKERIMDSNDLERERGITILSKNTSITYN 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~------------~~---~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 150 (512)
.+...||+++||+|+|||||+++|++..+.+... +. -..+++|..++|+++|+|++.....+.++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4567899999999999999999999887765432 11 12578999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCC--CCchhHHHHHHHHHHcCC-cEEEEEeccCCCCCC---chhh
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE--GPMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR---PDYV 224 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~--g~~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~---~~~~ 224 (512)
+..++|||||||.+|...+...+..+|++|+|+|+.+ +...++.+++..+...++ |+++|+||+|+...+ +...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 9999999999999999888888899999999999998 888999999998888886 589999999997532 2344
Q ss_pred HhhhHHHHHHhcCCccccccceeeeccccCccCCCCC-CcCCCc-hhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCC
Q 010392 225 INSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD-NLADDL-GPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHK 302 (512)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~-~~~~gi-~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~ 302 (512)
.+++.+.+...+... ..++++++||++|.|+.+.. ...|.- ..|++.| +.+|.|....+.||++.|.+++..++.
T Consensus 163 ~~~i~~~l~~~g~~~--~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l-~~~~~~~~~~~~p~r~~i~~~~~~~g~ 239 (425)
T PRK12317 163 KEEVSKLLKMVGYKP--DDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEAL-DNLKPPEKPTDKPLRIPIQDVYSISGV 239 (425)
T ss_pred HHHHHHHHHhhCCCc--CcceEEEeecccCCCccccccCCCcccHHHHHHHH-hcCCCCccccCCCcEEEEEEEEeeCCC
Confidence 556666665544321 13679999999999887654 233332 3466664 567888777789999999999999999
Q ss_pred cEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC--ccccCCeEecCCC
Q 010392 303 GRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKVS 377 (512)
Q Consensus 303 G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~--~~~~Gdtl~~~~~ 377 (512)
|+++.|+|.+|+|+.||.|.+.|.+... +|++|. .++.+++.|.|||.|++ .+++ ++++|++|++++.
T Consensus 240 G~vv~G~v~~G~v~~Gd~v~i~P~~~~~---~VksI~----~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 240 GTVPVGRVETGVLKVGDKVVFMPAGVVG---EVKSIE----MHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred eEEEEEEEeeccEecCCEEEECCCCCeE---EEEEEE----ECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCC
Confidence 9999999999999999999999998765 999994 45678999999999988 4554 6899999998754
No 35
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.1e-38 Score=328.90 Aligned_cols=286 Identities=25% Similarity=0.326 Sum_probs=227.3
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
..+..+||+++||+|+|||||+++|++...............+|..++|+++|+|++.....+.+++.+++|+|||||.+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 35678999999999999999999997542111111111123689999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--chhhHhhhHHHHHHhcCCccc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 241 (512)
|...+...+..+|++++|+|+.+|+..++++++..+...++| +|+++||+|+.+.. .+.+.+++.+++..++...
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~-- 214 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG-- 214 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC--
Confidence 999999999999999999999999999999999999999999 57899999997421 1222234445554433321
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEE
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEV 321 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v 321 (512)
..+|++++||+++....+......++..|++.+.+.+|.|....+.||++.|.+++..++.|+++.|+|.+|.|++||.|
T Consensus 215 ~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v 294 (447)
T PLN03127 215 DEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 294 (447)
T ss_pred CcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEE
Confidence 35789999987654332222223357899999999999888888899999999999999999999999999999999999
Q ss_pred EEccCCCc-eeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC--ccccCCeEecCC
Q 010392 322 RVCTSEDS-CRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKV 376 (512)
Q Consensus 322 ~~~~~~~~-~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~--~~~~Gdtl~~~~ 376 (512)
++.|.+.. ....+|++|. .++.++++|.|||.+++ .+++ ++++|++|++++
T Consensus 295 ~i~p~~~~g~~~~~VksI~----~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~ 350 (447)
T PLN03127 295 EIVGLRPGGPLKTTVTGVE----MFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPG 350 (447)
T ss_pred EEcccCCCCcEEEEEEEEE----EECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCC
Confidence 99875321 1235899994 44568999999999998 5664 799999999864
No 36
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.5e-37 Score=322.03 Aligned_cols=279 Identities=24% Similarity=0.263 Sum_probs=220.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCc------------c-----ceeeeeeccchhhhhcceeEEeeeeEEEECCe
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------Q-----TVKERIMDSNDLERERGITILSKNTSITYNDT 152 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~------------~-----~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 152 (512)
.+|+++||+|+|||||+++|++..+.+... + ....|++|..++|++||+|++.....+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 379999999999999999999988765541 1 11267999999999999999999999999999
Q ss_pred eEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCCchhhHhhhHHH
Q 010392 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSARPDYVINSTFEL 231 (512)
Q Consensus 153 ~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~~~~~~~~~~~~ 231 (512)
+++|||||||.+|...+..++..+|++|+|+|+.+|+..++++++..+...+++ +++|+||+|+...+ ...++++.+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~ 159 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKD 159 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998875 78899999997544 2333333333
Q ss_pred HHHhcCCccccccceeeeccccCccCCCCC-CcCCCch-hhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEE
Q 010392 232 FIELNATDEQCDFQAIYASGIQGKAGLSPD-NLADDLG-PLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGR 309 (512)
Q Consensus 232 ~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~-~~~~gi~-~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~gr 309 (512)
+..+........++++++||++|.|+.+.. ...|.-. .|++.| +.++.|....+.||++.|..++...+.+.-+.|+
T Consensus 160 ~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~ 238 (406)
T TIGR02034 160 YLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEIL-ETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGT 238 (406)
T ss_pred HHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHH-HhcCCCCCcCCCCcccceEEEeecCCCcEEEEEE
Confidence 322211111125689999999999877643 2233222 344444 5567776677899999999887544433446799
Q ss_pred EeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc--cCCccccCCeEecCCC
Q 010392 310 LHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GIDDIQIGETIADKVS 377 (512)
Q Consensus 310 V~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--~l~~~~~Gdtl~~~~~ 377 (512)
|.+|+|++||.|.+.|.+... +|++|. .+..++++|.|||++++. +.+++++||+|++++.
T Consensus 239 v~~G~l~~gd~v~i~P~~~~~---~VksI~----~~~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 239 IASGSVHVGDEVVVLPSGRSS---RVARIV----TFDGDLEQARAGQAVTLTLDDEIDISRGDLLAAADS 301 (406)
T ss_pred EecceeecCCEEEEeCCCcEE---EEEEEE----ECCcccCEeCCCCEEEEEECCccccCCccEEEcCCC
Confidence 999999999999999988765 999994 445689999999999994 3457999999998765
No 37
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=3.2e-37 Score=322.66 Aligned_cols=281 Identities=24% Similarity=0.317 Sum_probs=228.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc---------------ceeeeeeccchhhhhcceeEEeeeeEEEEC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ---------------TVKERIMDSNDLERERGITILSKNTSITYN 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~---------------~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 150 (512)
.+..+||+++||+|+|||||+++|++..+...... .-..+++|..++|+++|+|++.....+.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45678999999999999999999998766543211 011468999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC---CchhHHHHHHHHHHcCC-cEEEEEeccCCCCCC---chh
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG---PMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR---PDY 223 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g---~~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~---~~~ 223 (512)
+..++|||||||.+|...+..++..+|++++|+|+.++ ...++.+++..+...+. |+++|+||+|+.+.+ ++.
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 99999999999999998888889999999999999998 67788888777777775 688999999997533 223
Q ss_pred hHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCC---cCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeC
Q 010392 224 VINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN---LADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDE 300 (512)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~---~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~ 300 (512)
..+++.+.+...+... ..++++++||++|.|+.+... |..| ..|++.|. .++.|....+.||++.|++++..+
T Consensus 164 ~~~ei~~~~~~~g~~~--~~~~~i~iSA~~g~ni~~~~~~~~w~~g-~~l~~~l~-~~~~~~~~~~~p~r~~i~~v~~~~ 239 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNP--DTVPFIPISAWNGDNVIKKSENTPWYKG-KTLLEALD-ALEPPEKPTDKPLRIPIQDVYSIT 239 (426)
T ss_pred HHHHHHHHHHHcCCCc--ccceEEEeeccccccccccccCCccccc-hHHHHHHh-cCCCCCCccCCCcEEEEEEEEecC
Confidence 4555666665544321 246899999999998766432 2223 35888874 577777777899999999999999
Q ss_pred CCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCeEecCC
Q 010392 301 HKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKV 376 (512)
Q Consensus 301 ~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~~~~ 376 (512)
+.|+++.|+|.+|.|+.||.|.+.|.+... +|++|. .++.++++|.|||+|++ .++ +++++|++|+++.
T Consensus 240 g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~---~VksI~----~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~ 312 (426)
T TIGR00483 240 GVGTVPVGRVETGVLKPGDKVVFEPAGVSG---EVKSIE----MHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPD 312 (426)
T ss_pred CCeEEEEEEEccceeecCCEEEECCCCcEE---EEEEEE----ECCcccCEEcCCCEEEEEECCCChhhcccceEEecCC
Confidence 999999999999999999999999998765 899994 45678999999999998 455 4799999999875
Q ss_pred C
Q 010392 377 S 377 (512)
Q Consensus 377 ~ 377 (512)
.
T Consensus 313 ~ 313 (426)
T TIGR00483 313 N 313 (426)
T ss_pred C
Confidence 4
No 38
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-38 Score=301.00 Aligned_cols=285 Identities=28% Similarity=0.382 Sum_probs=244.2
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+...||+-+||+++|||||..++..-.-...........-.|..++|+.|||||+.....++.....+.-+|||||.||
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 45688999999999999999999875433222222333445689999999999999998888888999999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCC-CC-chhhHhhhHHHHHHhcCCcccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPS-AR-PDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+.+.....+.|++|+|+.+.+|..+||++++..+++.+++ ++|++||.|+.+ .+ .+-+.-++++++.+++++.+
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd-- 208 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD-- 208 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC--
Confidence 99999999999999999999999999999999999999986 788999999983 33 23345678888888887654
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEE
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~ 322 (512)
+.|||..||+......+++-..+.|..||+++-+++|.|.++.+.||.+.|.+++..+++|+|+.||+.+|+|++|+++.
T Consensus 209 ~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~e 288 (449)
T KOG0460|consen 209 NTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVE 288 (449)
T ss_pred CCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEE
Confidence 68999999987765555555556789999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCeEecCCC
Q 010392 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKVS 377 (512)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~~~~~ 377 (512)
+.+.++.. ...|..| ..++..+++|.|||.+++ .|+ +++++|.+++.++.
T Consensus 289 ivG~~~~l-kttvtgi----emF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 289 IVGHNKTL-KTTVTGI----EMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred EeccCcce-eeEeehH----HHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 99888764 4468888 667788999999999997 666 58999999999876
No 39
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-38 Score=292.06 Aligned_cols=284 Identities=26% Similarity=0.388 Sum_probs=238.5
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
..+...||+.+||.++|||||..+++...............-.|..++|++||+||......++..+..+..+|+|||.|
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 34568899999999999999999997653322222222244468899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCC-C-chhhHhhhHHHHHHhcCCccc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSA-R-PDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~~~ 241 (512)
|.+.+.....++|++|||+.|.+|..+||++++..+++.++| +++++||+|+.+. + .+.+..++++++..+++...
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd- 166 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGD- 166 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCC-
Confidence 999999999999999999999999999999999999999997 6788999999863 2 34455678888888776533
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEE
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEV 321 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v 321 (512)
+.|++..||+...... ..+...+.+|++++-+++|.|.++.+.||.+.|.+++...+.|++++|||.+|+|+.|+.+
T Consensus 167 -~~Pii~gSal~ale~~--~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~ev 243 (394)
T COG0050 167 -DTPIIRGSALKALEGD--AKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEV 243 (394)
T ss_pred -CcceeechhhhhhcCC--cchHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEE
Confidence 6799999998654322 2355578999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCeEecCCC
Q 010392 322 RVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKVS 377 (512)
Q Consensus 322 ~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~~~~~ 377 (512)
.+.+... -....+..+ .+.+..+++..|||.|++ .|+ +++.+|.+|+.+++
T Consensus 244 eivG~~~-~~kttvtgv----emfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgs 298 (394)
T COG0050 244 EIVGIKE-TQKTTVTGV----EMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGS 298 (394)
T ss_pred EEecccc-cceeEEEhH----HHHHHHHhccccCCCcceEEEeccccceecceEeecCCc
Confidence 9987762 223456666 567778999999999987 454 58999999998875
No 40
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.3e-36 Score=319.55 Aligned_cols=283 Identities=22% Similarity=0.270 Sum_probs=222.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcC------------ccce-----eeeeeccchhhhhcceeEEeeeeEEE
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD------------NQTV-----KERIMDSNDLERERGITILSKNTSIT 148 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~------------~~~~-----~~~~~d~~~~e~~~g~ti~~~~~~~~ 148 (512)
.+...||+++||+|+|||||+++|++..+.+.. .+.. -.+++|..++|++||+|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 345789999999999999999999998876553 1221 15689999999999999999999999
Q ss_pred ECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCC-cEEEEEeccCCCCCCchhhHhh
Q 010392 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-AVVVVVNKIDRPSARPDYVINS 227 (512)
Q Consensus 149 ~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~~~~~~~~ 227 (512)
+++..++|||||||.+|...+...+..+|++|+|+|+.+|+..++++++..+...++ ++++|+||+|+...+ .+.+++
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-~~~~~~ 182 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EEVFER 182 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch-hHHHHH
Confidence 999999999999999999999999999999999999999999999999998888885 688899999997543 233333
Q ss_pred hHHHHHHhcCCcc-ccccceeeeccccCccCCCCCC-cCCCc-hhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcE
Q 010392 228 TFELFIELNATDE-QCDFQAIYASGIQGKAGLSPDN-LADDL-GPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGR 304 (512)
Q Consensus 228 ~~~~~~~~~~~~~-~~~~pvi~~Sa~~g~~~~~~~~-~~~gi-~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~ 304 (512)
+.+.+..+..... ....+++++||++|.|+..... ..|.- ..|++ +++.+|.|....+.||++.|..++...+...
T Consensus 183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~-~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~ 261 (474)
T PRK05124 183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLE-VLETVDIQRVVDAQPFRFPVQYVNRPNLDFR 261 (474)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHH-HHhhcCCCCCCCCCCceeeEEEEEecCCccc
Confidence 4333322111100 1246899999999998876532 22321 23555 5667787777778999999998875443223
Q ss_pred EEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc--cCCccccCCeEecCCC
Q 010392 305 IAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GIDDIQIGETIADKVS 377 (512)
Q Consensus 305 v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--~l~~~~~Gdtl~~~~~ 377 (512)
.+.|+|.+|+|+.||+|.+.|.+... +|++|. .+..++++|.|||.|++. +.+++++||+||+++.
T Consensus 262 g~~G~V~sG~l~~Gd~v~i~P~~~~~---~VksI~----~~~~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~~~ 329 (474)
T PRK05124 262 GYAGTLASGVVKVGDRVKVLPSGKES---NVARIV----TFDGDLEEAFAGEAITLVLEDEIDISRGDLLVAADE 329 (474)
T ss_pred ceEEEEEeEEEecCCEEEEecCCceE---EEEEEE----EcCccccCcCCCCEEEEEeCCccccCCccEEECCCC
Confidence 36799999999999999999998765 999995 345578999999999994 3457999999998754
No 41
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-37 Score=315.99 Aligned_cols=385 Identities=25% Similarity=0.356 Sum_probs=297.4
Q ss_pred cccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 84 ~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
+....+|||+++.|.++|||||+.+|+...+.+...-.-.-+++|+.+.|+.||||..++......+++.+|+||+|||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 34668999999999999999999999999888777666667899999999999999999999888899999999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC----CCchh-------hHhhhHHHH
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS----ARPDY-------VINSTFELF 232 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~----~~~~~-------~~~~~~~~~ 232 (512)
||..++..+.+-+|+++++||+.+|+..||..+++++-..+...++|+||+|+.. ..+.+ +++++...+
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i 163 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVI 163 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999999999999642 22222 223332222
Q ss_pred HHh----cC---C-----c-----cccccceeeeccccCccCCCCC----------------------------------
Q 010392 233 IEL----NA---T-----D-----EQCDFQAIYASGIQGKAGLSPD---------------------------------- 261 (512)
Q Consensus 233 ~~~----~~---~-----~-----~~~~~pvi~~Sa~~g~~~~~~~---------------------------------- 261 (512)
..+ .. . + ...+-.|++.||..|++..-..
T Consensus 164 ~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~ 243 (887)
T KOG0467|consen 164 GQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRIC 243 (887)
T ss_pred HHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhh
Confidence 210 00 0 0 0112358899999888631000
Q ss_pred --CcCCC--------------------------------------------chhhHHHHH---------------HhCCC
Q 010392 262 --NLADD--------------------------------------------LGPLFESIM---------------RCIPG 280 (512)
Q Consensus 262 --~~~~g--------------------------------------------i~~Ll~~i~---------------~~lp~ 280 (512)
....| ++.+++.++ ..+|.
T Consensus 244 ~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLPls~avll~a~~~lp~ 323 (887)
T KOG0467|consen 244 EGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLPLSDAVLLTVVYKLPD 323 (887)
T ss_pred cccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHHHHhhcccccchHHHHHHhcCC
Confidence 00000 011222222 23344
Q ss_pred CC----------------------------CcccccceeeeEEEeeeCC-----CcEEEEEEEeecccCCCCEEEEccCC
Q 010392 281 PR----------------------------IEKDGALQMLATNLEYDEH-----KGRIAIGRLHAGVLRKGMEVRVCTSE 327 (512)
Q Consensus 281 p~----------------------------~~~~~p~~~~V~~~~~~~~-----~G~v~~grV~sG~l~~g~~v~~~~~~ 327 (512)
|. ++.+.|..++|.+....+. ..-++++|||||+++.|+.++..+..
T Consensus 324 pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v~~pd 403 (887)
T KOG0467|consen 324 PIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYVLGPD 403 (887)
T ss_pred HHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeeccCceeeccEeeecCCC
Confidence 31 2345677778887765432 22579999999999999999997662
Q ss_pred ----CceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCC-CCCCCCeEEEEEEecCCCC
Q 010392 328 ----DSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPS-IKVEEPTVKMSFSINTSPF 402 (512)
Q Consensus 328 ----~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~-~~~~~P~~~~av~~~~~~~ 402 (512)
..+...+|.++|.++|....+.+++.+|++++|.|-+.+....|||+.....++.. ..-.+|.++++++|.+
T Consensus 404 ~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~~tp~vrvaiep~~--- 480 (887)
T KOG0467|consen 404 PLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQITPIVRVAIEPDD--- 480 (887)
T ss_pred CCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeeeeeeeEEEEEeecCC---
Confidence 22445689999999999999999999999999988444667889998644333222 2345699999998765
Q ss_pred CCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEeec
Q 010392 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLAKD 478 (512)
Q Consensus 403 ~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e~~ 478 (512)
+++ ++++.+.|.-+..-||++++..+ +++|+++...||+||+-++.+|++.-++++.+++|-|.||||.
T Consensus 481 -p~e-----m~~L~~glkll~~adp~v~i~v~-~~gEhvl~~aGevhlerc~kDL~efa~i~i~vSeP~vpfrET~ 549 (887)
T KOG0467|consen 481 -PDE-----MDKLVEGLKLLNQADPFVKIRVE-ENGEHVLVTAGEVHLERCLKDLKEFAKIEISVSEPLVPFRETI 549 (887)
T ss_pred -hHH-----hHHHHHHHHhhcccchhhHHHHh-hccceeeeeccHHHHHHHHHHHhhhhceEEEecCCccchhhhc
Confidence 666 89999999999999999998875 5889999999999999999999993369999999999999997
No 42
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.7e-35 Score=323.21 Aligned_cols=305 Identities=24% Similarity=0.321 Sum_probs=238.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
..+.++|+|+||+|+|||||+++|........ ..+|+|.......+.|++..++|||||||.+|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~----------------e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F 350 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG----------------EAGGITQHIGAYQVETNGGKITFLDTPGHEAF 350 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccc----------------ccCceeeeccEEEEEECCEEEEEEECCCCccc
Confidence 34678999999999999999999976433211 13478888888889999999999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
..++.+++..+|++|||+|+.+|+..++.++|..+...++|+|||+||+|+..++.+.+..++.+. .+.......++|
T Consensus 351 ~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~--~~~~e~~g~~vp 428 (787)
T PRK05306 351 TAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY--GLVPEEWGGDTI 428 (787)
T ss_pred hhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh--cccHHHhCCCce
Confidence 999999999999999999999999999999999999999999999999999876655555544331 011111122478
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhC--CCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEE
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI--PGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRV 323 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l--p~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~ 323 (512)
++++||++|. |+.+|+++|.... ..+..+++.|+.++|++++.+++.|.+++++|++|+|+.||.|.+
T Consensus 429 ~vpvSAktG~----------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~ 498 (787)
T PRK05306 429 FVPVSAKTGE----------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVA 498 (787)
T ss_pred EEEEeCCCCC----------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEE
Confidence 9999999999 8999999887532 223456678999999999999999999999999999999999998
Q ss_pred ccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcc-ccCCeEecCCCC------------------------
Q 010392 324 CTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDI-QIGETIADKVSG------------------------ 378 (512)
Q Consensus 324 ~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~-~~Gdtl~~~~~~------------------------ 378 (512)
.+. ..+|..| .+.+..++++|.|||+|.|.|++++ .+||+|+...+.
T Consensus 499 g~~-----~gkVr~m---~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~ 570 (787)
T PRK05306 499 GTT-----YGRVRAM---VDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQR 570 (787)
T ss_pred CCc-----EEEEEEE---ECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 531 2355555 4666788999999999999999988 899999843221
Q ss_pred CCCCCCC--CCC---CeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECC
Q 010392 379 KPLPSIK--VEE---PTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGE 435 (512)
Q Consensus 379 ~~l~~~~--~~~---P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~ 435 (512)
..+..+. ... +.+.+.+.+.. ... .+.|.++|.++..+++.+++-..+
T Consensus 571 ~~l~~~~~~~~~~~~~~~~~iikad~----~Gs-----~eai~~~l~~l~~~~v~~~i~~~~ 623 (787)
T PRK05306 571 VSLENLFEQMKEGEVKELNLIIKADV----QGS-----VEALKDSLEKLSTDEVKVNIIHSG 623 (787)
T ss_pred cCHHHhhhhhhcCCceEEEEEEEeCC----cch-----HHHHHHHHHhhcccCCceEEEeec
Confidence 1122211 111 25777777655 222 578999999999999999987764
No 43
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=3.1e-35 Score=305.63 Aligned_cols=262 Identities=22% Similarity=0.255 Sum_probs=214.0
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE---------------
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY--------------- 149 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--------------- 149 (512)
.+....+|+++||.++|||||+.+|++.. .|..++|++||+|++..+..+.+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~-------------~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~ 96 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVK-------------TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSY 96 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCC-------------cccchhhHHhCCchhccccccccccCcccCCccccccc
Confidence 35567899999999999999999998532 25678999999999887665421
Q ss_pred C------------------CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHcCCc-EEE
Q 010392 150 N------------------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEFGHA-VVV 209 (512)
Q Consensus 150 ~------------------~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~~~p-~iv 209 (512)
. ...++|+|||||++|...+...+..+|++++|||+.++ +..|+++++..+...+++ +|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIV 176 (460)
T PTZ00327 97 GSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIII 176 (460)
T ss_pred CCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEE
Confidence 1 13689999999999999999999999999999999986 799999999998888875 889
Q ss_pred EEeccCCCCC-CchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCccccc
Q 010392 210 VVNKIDRPSA-RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGA 288 (512)
Q Consensus 210 viNK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p 288 (512)
|+||+|+.+. ...+..+++.+++.... ...+|++++||++|. |++.|++.|.+.+|.|..+.+.|
T Consensus 177 vlNKiDlv~~~~~~~~~~ei~~~l~~~~----~~~~~iipVSA~~G~----------nI~~Ll~~L~~~lp~~~r~~~~p 242 (460)
T PTZ00327 177 LQNKIDLVKEAQAQDQYEEIRNFVKGTI----ADNAPIIPISAQLKY----------NIDVVLEYICTQIPIPKRDLTSP 242 (460)
T ss_pred EEecccccCHHHHHHHHHHHHHHHHhhc----cCCCeEEEeeCCCCC----------CHHHHHHHHHhhCCCCCCCCCCC
Confidence 9999999742 23344555665554322 235789999999999 99999999999999998788899
Q ss_pred ceeeeEEEeeeC--------CCcEEEEEEEeecccCCCCEEEEccCCC------ce----eeeeeeeeEeeecCceeecc
Q 010392 289 LQMLATNLEYDE--------HKGRIAIGRLHAGVLRKGMEVRVCTSED------SC----RYARISELFVYEKFSRVSAE 350 (512)
Q Consensus 289 ~~~~V~~~~~~~--------~~G~v~~grV~sG~l~~g~~v~~~~~~~------~~----~~~kV~~i~~~~g~~~~~v~ 350 (512)
|+++|+++|... +.|+|+.|+|.+|+|++||+|.+.|.+. ++ ...+|++|. .++.+++
T Consensus 243 ~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~----~~~~~v~ 318 (460)
T PTZ00327 243 PRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLF----AENNELQ 318 (460)
T ss_pred cEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEE----ECCeECC
Confidence 999999888654 3799999999999999999999999751 11 124899994 5678999
Q ss_pred eecCCCEEEEc-----cC--CccccCCeEecCCC
Q 010392 351 IVAAGDICAVC-----GI--DDIQIGETIADKVS 377 (512)
Q Consensus 351 ~a~aGdiv~i~-----~l--~~~~~Gdtl~~~~~ 377 (512)
+|.|||.++|. ++ +++.+|++|++++.
T Consensus 319 ~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 319 YAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred EEcCCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 99999999994 33 36889999998754
No 44
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=9.5e-35 Score=313.15 Aligned_cols=251 Identities=24% Similarity=0.304 Sum_probs=211.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCCChHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~~ 169 (512)
.|+++||+|+|||||+++|++.. +|..++|+++|+|++.....+.. ++..++|||||||++|...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~-------------~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVN-------------ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-------------CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHH
Confidence 48999999999999999997531 36677889999999988777765 35678999999999999999
Q ss_pred HHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCC-CchhhHhhhHHHHHHhcCCcccccccee
Q 010392 170 ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSA-RPDYVINSTFELFIELNATDEQCDFQAI 247 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pvi 247 (512)
..++..+|++++|+|+.+|+..++++++..+...++| +++|+||+|+.+. ..+...+++.+.+...+.. ..|+|
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~----~~~ii 144 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFA----EAKLF 144 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCC----CCcEE
Confidence 9999999999999999999999999999999988988 5799999999752 2334455555555443321 35799
Q ss_pred eeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCC
Q 010392 248 YASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE 327 (512)
Q Consensus 248 ~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~ 327 (512)
++||++|. |++.|++.|.+. +.|....+.||++.|.++|..++.|+|+.|+|.+|+|+.||+|.+.|.+
T Consensus 145 ~VSA~tG~----------gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~ 213 (614)
T PRK10512 145 VTAATEGR----------GIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVN 213 (614)
T ss_pred EEeCCCCC----------CCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCC
Confidence 99999999 999999999865 4444557789999999999999999999999999999999999999988
Q ss_pred CceeeeeeeeeEeeecCceeecceecCCCEEEE--cc-CC--ccccCCeEecCC
Q 010392 328 DSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CG-ID--DIQIGETIADKV 376 (512)
Q Consensus 328 ~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~-l~--~~~~Gdtl~~~~ 376 (512)
... +|++| ..++.++++|.|||+|++ .+ ++ ++++||+|++++
T Consensus 214 ~~~---~VrsI----q~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 214 KPM---RVRGL----HAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred CcE---EEEEE----ecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 766 89999 456689999999999998 44 53 799999999764
No 45
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=7.5e-34 Score=303.93 Aligned_cols=302 Identities=23% Similarity=0.317 Sum_probs=236.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe-eEEEEeCCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-KINIIDTPGHSDF 165 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~-~i~liDtPG~~~~ 165 (512)
.+.++|+++||+|+|||||+++|......... .+|+|.......+.+.+. .++|||||||.+|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e----------------~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F 148 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGE----------------AGGITQHIGAYHVENEDGKMITFLDTPGHEAF 148 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccc----------------CCceeecceEEEEEECCCcEEEEEECCCCcch
Confidence 35678999999999999999999875443211 236787777777888655 8999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC--ccccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT--DEQCD 243 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 243 (512)
...+.+++..+|++++|+|+.++...++.+++..+...++|+++++||+|+.+.+.++...++.+ .+.. .....
T Consensus 149 ~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~----~g~~~~~~~~~ 224 (587)
T TIGR00487 149 TSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE----YGLVPEDWGGD 224 (587)
T ss_pred hhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH----hhhhHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999976655444443332 2211 11124
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHh--CCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEE
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC--IPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEV 321 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~--lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v 321 (512)
++++++||++|. |+.+|++++... ++....+++.|+++.|++++.+++.|.+++++|++|+|++||.|
T Consensus 225 ~~~v~iSAktGe----------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~i 294 (587)
T TIGR00487 225 TIFVPVSALTGD----------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIV 294 (587)
T ss_pred ceEEEEECCCCC----------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEE
Confidence 679999999999 999999988643 34444566789999999999999999999999999999999999
Q ss_pred EEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcc-ccCCeEecCCCC----------------------
Q 010392 322 RVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDI-QIGETIADKVSG---------------------- 378 (512)
Q Consensus 322 ~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~-~~Gdtl~~~~~~---------------------- 378 (512)
.+.+.. .+|+.|+.. +...+++|.||+.|.|.|++++ ..||+|.-..+.
T Consensus 295 v~~~~~-----~kVr~l~~~---~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~ 366 (587)
T TIGR00487 295 VVGAAY-----GRVRAMIDE---NGKSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRS 366 (587)
T ss_pred EECCCc-----cEEEEEECC---CCCCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhc
Confidence 987642 388888643 3457899999999999999886 889999732111
Q ss_pred --CCCCCCC-----CCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECC
Q 010392 379 --KPLPSIK-----VEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGE 435 (512)
Q Consensus 379 --~~l~~~~-----~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~ 435 (512)
..+..+. -..|.+.+.+.+.+ ... .+.|.++|.++..+++.+++-..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~viikad~----~Gs-----~eal~~~l~~~~~~~~~~~v~~~~ 421 (587)
T TIGR00487 367 VKVTLDNLFEQIKEGELKELNIILKADV----QGS-----LEAIKNSLEKLNNEEVKVKVIHSG 421 (587)
T ss_pred cccchhHhhhhhhccCCceEEEEEEeCC----cch-----HHHHHHHHHhhcccCCeEEEEEee
Confidence 0111111 12377888887765 222 578999999999999999887654
No 46
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-34 Score=294.08 Aligned_cols=281 Identities=23% Similarity=0.303 Sum_probs=236.9
Q ss_pred hcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc---------------ceeeeeeccchhhhhcceeEEeeeeEE
Q 010392 83 LMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ---------------TVKERIMDSNDLERERGITILSKNTSI 147 (512)
Q Consensus 83 ~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~---------------~~~~~~~d~~~~e~~~g~ti~~~~~~~ 147 (512)
+..++...+++++||+++|||||+.+|++..+.+.... +...|++|...+||+||+|.+.....+
T Consensus 171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 34456788999999999999999999998877654322 233899999999999999999999999
Q ss_pred EECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCC-------chhHHHHHHHHHHcCC-cEEEEEeccCCCCC
Q 010392 148 TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-------MPQTRFVLKKALEFGH-AVVVVVNKIDRPSA 219 (512)
Q Consensus 148 ~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~-------~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~ 219 (512)
+.+...++|+|+|||.||...+......+|.++||+||+.+. ..|++++...++.+|+ .+||++||||+.++
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSW 330 (603)
T ss_pred ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCc
Confidence 999999999999999999999999999999999999988754 3599999999999997 58999999999976
Q ss_pred C---chhhHhhhHHHH-HHhcCCccccccceeeeccccCccCCCCC------CcCCCchhhHHHHHHhCCCCCCcccccc
Q 010392 220 R---PDYVINSTFELF-IELNATDEQCDFQAIYASGIQGKAGLSPD------NLADDLGPLFESIMRCIPGPRIEKDGAL 289 (512)
Q Consensus 220 ~---~~~~~~~~~~~~-~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~------~~~~gi~~Ll~~i~~~lp~p~~~~~~p~ 289 (512)
+ ++++...+..++ +..++.+ .++.++|+|+++|+|..... +|.+| ..||+.|.. +..|....+.||
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~e--s~v~FIPiSGl~GeNL~k~~~~~~l~~WY~G-p~LL~~id~-~~~p~~~~~kPl 406 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKE--SSVKFIPISGLSGENLIKIEQENELSQWYKG-PTLLSQIDS-FKIPERPIDKPL 406 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCccc--CCcceEecccccCCcccccccchhhhhhhcC-ChHHHHHhh-ccCCCCcccCCe
Confidence 5 566666666666 4444433 35679999999999987652 34444 356777666 878877788899
Q ss_pred eeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--Cc
Q 010392 290 QMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DD 365 (512)
Q Consensus 290 ~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~ 365 (512)
++.|.+++..+..|..++|+|.+|.|++||+|+++++.... .|++| ..+..+...|.|||.|.+ .++ ..
T Consensus 407 ~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~---~vk~l----~~~~~~~~~a~AGD~Vsl~L~~i~~n~ 479 (603)
T KOG0458|consen 407 RLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDA---TVKGL----TSNDEPKTWAVAGDNVSLKLPGILPNL 479 (603)
T ss_pred EEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceE---EEEee----ecCCCcceeEeeCCEEEEecCccChhh
Confidence 99999999999999999999999999999999999999887 89998 455778999999999998 344 47
Q ss_pred cccCCeEec
Q 010392 366 IQIGETIAD 374 (512)
Q Consensus 366 ~~~Gdtl~~ 374 (512)
++.||+++.
T Consensus 480 v~~g~i~~~ 488 (603)
T KOG0458|consen 480 VQVGDIADS 488 (603)
T ss_pred cccceeeec
Confidence 999999994
No 47
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=2e-34 Score=314.95 Aligned_cols=279 Identities=22% Similarity=0.255 Sum_probs=220.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc------------cc----ee-eeeeccchhhhhcceeEEeeeeEEEE
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------QT----VK-ERIMDSNDLERERGITILSKNTSITY 149 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~------------~~----~~-~~~~d~~~~e~~~g~ti~~~~~~~~~ 149 (512)
....+|+++||+|+|||||+++|++..+.+... ++ +. .+++|..++|++||+|++.....+.+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 345689999999999999999999987765421 11 11 57899999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCC-cEEEEEeccCCCCCC---chhhH
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR---PDYVI 225 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~---~~~~~ 225 (512)
++.+++|||||||.+|...+...+..+|++++|+|+..|+..++++++..+...++ ++++|+||+|+...+ ++++.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~ 181 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIV 181 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999988885 688899999997532 22233
Q ss_pred hhhHHHHHHhcCCccccccceeeeccccCccCCCCCC-cCCCc-hhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCc
Q 010392 226 NSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDL-GPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKG 303 (512)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~-~~~gi-~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G 303 (512)
.++.+++..++. .+++++++||++|.|+.+... ..|.- ..|++. ++.++.|....+.||++.|..++...+.+
T Consensus 182 ~~i~~~~~~~~~----~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~-l~~~~~~~~~~~~p~r~~i~~v~~~~~~~ 256 (632)
T PRK05506 182 ADYRAFAAKLGL----HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEH-LETVEIASDRNLKDFRFPVQYVNRPNLDF 256 (632)
T ss_pred HHHHHHHHHcCC----CCccEEEEecccCCCccccccCCCcccHhHHHHH-HhcCCCCCCcCCCCceeeEEEEEecCCCc
Confidence 444444444433 246799999999998775432 22322 245544 45566666667899999999887644333
Q ss_pred EEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc--cCCccccCCeEecCCC
Q 010392 304 RIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GIDDIQIGETIADKVS 377 (512)
Q Consensus 304 ~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--~l~~~~~Gdtl~~~~~ 377 (512)
+.+.|+|.+|+|++||+|.+.|.+... +|++|. .++.++++|.|||.|+|. +..++++|++||++++
T Consensus 257 ~g~~G~v~~G~l~~gd~v~i~P~~~~~---~VksI~----~~~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~~ 325 (632)
T PRK05506 257 RGFAGTVASGVVRPGDEVVVLPSGKTS---RVKRIV----TPDGDLDEAFAGQAVTLTLADEIDISRGDMLARADN 325 (632)
T ss_pred eEEEEEEecceeecCCEEEEcCCCceE---EEEEEE----ECCceeCEEcCCCeEEEEecCccccCCccEEecCCC
Confidence 346799999999999999999998765 999994 445679999999999994 3357899999998765
No 48
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=5.8e-34 Score=295.28 Aligned_cols=261 Identities=26% Similarity=0.290 Sum_probs=209.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC---------------
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--------------- 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--------------- 150 (512)
.+...||+++||.|+|||||+++|.+ .++|.+++|++||+|+......+.+.
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~-------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTG-------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEP 72 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhC-------------eecccCHhHHhcCcEEEecccccccccccccCccccccccc
Confidence 44678999999999999999999943 14788999999999999876544331
Q ss_pred -----------CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHcCC-cEEEEEeccCCC
Q 010392 151 -----------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGH-AVVVVVNKIDRP 217 (512)
Q Consensus 151 -----------~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~~~-p~ivviNK~Dl~ 217 (512)
...++|||||||.+|...+...+..+|++++|+|+.++. ..++.+++..+...++ |+++|+||+|+.
T Consensus 73 ~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 73 KCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred cccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 257999999999999998888889999999999999987 7888888888888876 589999999997
Q ss_pred CCCc-hhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEE
Q 010392 218 SARP-DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296 (512)
Q Consensus 218 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~ 296 (512)
+.+. ....+++.+.+... ....+|++++||++|. |++.|++.|.+.+|.|..+.+.||++.|+++
T Consensus 153 ~~~~~~~~~~~i~~~l~~~----~~~~~~ii~vSA~~g~----------gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~ 218 (411)
T PRK04000 153 SKERALENYEQIKEFVKGT----VAENAPIIPVSALHKV----------NIDALIEAIEEEIPTPERDLDKPPRMYVARS 218 (411)
T ss_pred cchhHHHHHHHHHHHhccc----cCCCCeEEEEECCCCc----------CHHHHHHHHHHhCCCCCCCCCCCceEEEEee
Confidence 5321 12233344333221 1124689999999999 9999999999999988777889999999998
Q ss_pred eeeC--------CCcEEEEEEEeecccCCCCEEEEccCCC-------ce--eeeeeeeeEeeecCceeecceecCCCEEE
Q 010392 297 EYDE--------HKGRIAIGRLHAGVLRKGMEVRVCTSED-------SC--RYARISELFVYEKFSRVSAEIVAAGDICA 359 (512)
Q Consensus 297 ~~~~--------~~G~v~~grV~sG~l~~g~~v~~~~~~~-------~~--~~~kV~~i~~~~g~~~~~v~~a~aGdiv~ 359 (512)
|... +.|.|+.|||.+|+|++||.|.+.|.+. .+ ...+|++|. .++.++++|.|||.++
T Consensus 219 f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~----~~~~~~~~a~~G~~v~ 294 (411)
T PRK04000 219 FDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLR----AGGEKVEEARPGGLVG 294 (411)
T ss_pred eeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEE----ECCEECCEEcCCCEEE
Confidence 8654 4577999999999999999999999753 00 124899994 5568899999999999
Q ss_pred Ec-----cC--CccccCCeEecCCC
Q 010392 360 VC-----GI--DDIQIGETIADKVS 377 (512)
Q Consensus 360 i~-----~l--~~~~~Gdtl~~~~~ 377 (512)
|. ++ +++.+|++|++++.
T Consensus 295 i~l~~~~~i~~~~i~~G~vl~~~~~ 319 (411)
T PRK04000 295 VGTKLDPSLTKADALAGSVAGKPGT 319 (411)
T ss_pred EEeccCCCCCHHHccCccEEEcCCC
Confidence 84 33 36889999998865
No 49
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-34 Score=276.45 Aligned_cols=375 Identities=20% Similarity=0.237 Sum_probs=266.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc------------ce-----eeeeeccchhhhhcceeEEeeeeEEEE
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ------------TV-----KERIMDSNDLERERGITILSKNTSITY 149 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~------------~~-----~~~~~d~~~~e~~~g~ti~~~~~~~~~ 149 (512)
+...+++.+|+++-||||||.+|++.+..+.... +. .....|-...|+|.||||+..+..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3467899999999999999999998765432111 10 045778999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCCchhhHhhh
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSARPDYVINST 228 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~~~~~~~~~ 228 (512)
+..+|.+.|||||+.|...+......||.+|++|||..|+..|++.|-..+.-.|++ +++.+|||||.+.+ ++..+++
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~-e~~F~~I 162 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS-EEVFEAI 162 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccC-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999989985 78899999999765 4445555
Q ss_pred HHHHHHhcCCccccccceeeeccccCccCCCCC-CcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEE
Q 010392 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPD-NLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAI 307 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~-~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~ 307 (512)
...|..+..........++|+||+.|+|+...+ .+.|.-.+-|-.+++.+..-......+|++.|..+.....-=+-..
T Consensus 163 ~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGya 242 (431)
T COG2895 163 VADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYA 242 (431)
T ss_pred HHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhccccccccccceeeceEEecCCCCcccccc
Confidence 554443332222223468999999999998875 3455555555555666666555667789999998876432223478
Q ss_pred EEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCC--ccccCCeEecCCCCCCCCCCC
Q 010392 308 GRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGID--DIQIGETIADKVSGKPLPSIK 385 (512)
Q Consensus 308 grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~--~~~~Gdtl~~~~~~~~l~~~~ 385 (512)
|+|.+|++++||.|.+.|+|+.. +|++|..+.| ++++|.||+-|.+.--+ ++.+||+|+..+.++. ..-.
T Consensus 243 GtiasG~v~~Gd~vvvlPsG~~s---~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~~-~~~~ 314 (431)
T COG2895 243 GTIASGSVKVGDEVVVLPSGKTS---RVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDLIVAADAPPA-VADA 314 (431)
T ss_pred eeeeccceecCCeEEEccCCCee---eEEEEeccCC----chhhccCCceEEEEEcceeecccCcEEEccCCCcc-hhhh
Confidence 99999999999999999999887 9999988866 67889999999996544 6889999998876332 2222
Q ss_pred CCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECC----CCCeEEEEEecHHHHHHHHHHHchhc
Q 010392 386 VEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGE----TADTFIVSGRGTLHITILIENILPLW 461 (512)
Q Consensus 386 ~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~----~t~e~~l~g~Gelhl~i~~~~L~~~y 461 (512)
|. ...||....|+.+.....+ |+..+..+..-++..-++..+. ..+.+.+.++|.++|..-..-.-+.|
T Consensus 315 f~----A~vvWm~~~pl~pGr~Y~l---K~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~fd~Y 387 (431)
T COG2895 315 FD----ADVVWMDEEPLLPGRSYDL---KIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIAFDAY 387 (431)
T ss_pred cc----eeEEEecCCCCCCCceEEE---EecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCceeeccc
Confidence 33 3557777777755432110 1111111111111111222211 22345566667666665544455566
Q ss_pred CceEEeeceeEEEEee
Q 010392 462 RYQKNIWGLWLNFLAK 477 (512)
Q Consensus 462 ~v~~~~~~~~v~~~e~ 477 (512)
+-+-.+|.-.++=+-|
T Consensus 388 ~~N~atG~FIlID~~t 403 (431)
T COG2895 388 AENRATGSFILIDRLT 403 (431)
T ss_pred ccCcccccEEEEEcCC
Confidence 6666666665555555
No 50
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=9.3e-34 Score=293.99 Aligned_cols=260 Identities=25% Similarity=0.309 Sum_probs=209.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-----------------
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY----------------- 149 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~----------------- 149 (512)
+...||+++||+|+|||||+++|.+. .+|.+++|++||+|+......+.+
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPV 68 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCcccccccccc
Confidence 35678999999999999999999532 367888999999999887554331
Q ss_pred ---------CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHcCC-cEEEEEeccCCCC
Q 010392 150 ---------NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGH-AVVVVVNKIDRPS 218 (512)
Q Consensus 150 ---------~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~ 218 (512)
.+..++|||||||++|...+..++..+|++++|+|+.++. ..++++++..+...++ |+++|+||+|+.+
T Consensus 69 ~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 69 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 1357999999999999999999999999999999999988 8899999998888876 5899999999975
Q ss_pred CCc-hhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEe
Q 010392 219 ARP-DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLE 297 (512)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~ 297 (512)
.+. ....+++.+++.... ...+|++++||++|. |++.|++.|...+|.|..+.+.||++.|++++
T Consensus 149 ~~~~~~~~~~i~~~l~~~~----~~~~~ii~vSA~~g~----------gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f 214 (406)
T TIGR03680 149 KEKALENYEEIKEFVKGTV----AENAPIIPVSALHNA----------NIDALLEAIEKFIPTPERDLDKPPLMYVARSF 214 (406)
T ss_pred HHHHHHHHHHHHhhhhhcc----cCCCeEEEEECCCCC----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEE
Confidence 321 122344444333221 125689999999999 99999999999999887778899999999998
Q ss_pred eeCC--------CcEEEEEEEeecccCCCCEEEEccCCCc-------e--eeeeeeeeEeeecCceeecceecCCCEEEE
Q 010392 298 YDEH--------KGRIAIGRLHAGVLRKGMEVRVCTSEDS-------C--RYARISELFVYEKFSRVSAEIVAAGDICAV 360 (512)
Q Consensus 298 ~~~~--------~G~v~~grV~sG~l~~g~~v~~~~~~~~-------~--~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i 360 (512)
...+ +|.|+.|+|.+|+|++||+|.+.|.+.. + ...+|++|. .++.++++|.|||.|+|
T Consensus 215 ~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~----~~~~~~~~a~~G~~v~i 290 (406)
T TIGR03680 215 DVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLR----AGGYKVEEARPGGLVGV 290 (406)
T ss_pred eecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEE----ECCEECCEEcCCCEEEE
Confidence 6544 6779999999999999999999987521 0 124899994 45689999999999998
Q ss_pred c-----cC--CccccCCeEecCCC
Q 010392 361 C-----GI--DDIQIGETIADKVS 377 (512)
Q Consensus 361 ~-----~l--~~~~~Gdtl~~~~~ 377 (512)
. ++ +++.+|++|++++.
T Consensus 291 ~l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 291 GTKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred eeccCCCCCHHHcccccEEEcCCC
Confidence 3 34 36889999998764
No 51
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1.3e-33 Score=303.54 Aligned_cols=253 Identities=25% Similarity=0.276 Sum_probs=210.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++||+|+|||||+++|++.. +|..++|+++|+|++.....+.+++..++|||||||++|...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~-------------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA-------------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc-------------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHH
Confidence 69999999999999999998532 25566788899999999888999999999999999999999999
Q ss_pred HHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCC-chhhHhhhHHHHHHhcCCccccccceee
Q 010392 171 RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR-PDYVINSTFELFIELNATDEQCDFQAIY 248 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pvi~ 248 (512)
.++..+|++++|+|+.+|...++.+++..+...++| +++|+||+|+.+.+ .+...+++.+.+...+.. ..+|+++
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~---~~~~ii~ 145 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFL---KNAKIFK 145 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCC---CCCcEEE
Confidence 999999999999999999999999999999989999 99999999997532 223344555555443321 1468999
Q ss_pred eccccCccCCCCCCcCCCchhhHHHHHHhCCCCC-CcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCC
Q 010392 249 ASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR-IEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE 327 (512)
Q Consensus 249 ~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~-~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~ 327 (512)
+||++|. |+.++++.+.+.+.... ...+.||++.|.++|..++.|+|+.|+|.+|+++.||+|.+.|.+
T Consensus 146 vSA~tG~----------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~ 215 (581)
T TIGR00475 146 TSAKTGQ----------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPIN 215 (581)
T ss_pred EeCCCCC----------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCC
Confidence 9999999 88888777766543321 124689999999999999999999999999999999999999998
Q ss_pred CceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC--ccccCCeEecCC
Q 010392 328 DSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKV 376 (512)
Q Consensus 328 ~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~--~~~~Gdtl~~~~ 376 (512)
... +|++|. .+..++++|.|||.|+| .+++ ++++|.+++++.
T Consensus 216 ~~~---~Vr~iq----~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~ 261 (581)
T TIGR00475 216 HEV---RVKAIQ----AQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPE 261 (581)
T ss_pred ceE---EEeEEE----ECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCC
Confidence 766 999994 45678999999999999 4554 699997776553
No 52
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.9e-32 Score=296.64 Aligned_cols=254 Identities=24% Similarity=0.330 Sum_probs=202.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC----CeeEEEEeCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN----DTKINIIDTPG 161 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~----~~~i~liDtPG 161 (512)
..+.++|+|+||+|+|||||+++|....+.... .+|+|.......+.+. +..++||||||
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e----------------~~GiTq~i~~~~v~~~~~~~~~kItfiDTPG 304 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE----------------AGGITQKIGAYEVEFEYKDENQKIVFLDTPG 304 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcccc----------------CCccccccceEEEEEEecCCceEEEEEECCc
Confidence 346789999999999999999999876554221 2366665555554443 57899999999
Q ss_pred CCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 162 ~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
|.+|..++.+++..+|++|||+|+.+|...++.+.+..+...++|+|+|+||+|+...+.+.+..++... .+......
T Consensus 305 he~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~--~ll~e~~g 382 (742)
T CHL00189 305 HEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY--NLIPEKWG 382 (742)
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh--ccchHhhC
Confidence 9999999999999999999999999999999999999999999999999999999876544444443321 00001111
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC--CCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP--GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGM 319 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp--~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~ 319 (512)
..+|++++||++|. |+.+|++.|..... ....+++.|+.+.|+++..+++.|++++++|++|+|+.||
T Consensus 383 ~~vpvv~VSAktG~----------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD 452 (742)
T CHL00189 383 GDTPMIPISASQGT----------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGD 452 (742)
T ss_pred CCceEEEEECCCCC----------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCC
Confidence 24789999999999 99999999887543 3334566789999999999999999999999999999999
Q ss_pred EEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccC-CccccCCeEecC
Q 010392 320 EVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGI-DDIQIGETIADK 375 (512)
Q Consensus 320 ~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l-~~~~~Gdtl~~~ 375 (512)
.|.+.+. ..+|..|+ +....++++|.|||+|+|.|+ +...+||+|.-.
T Consensus 453 ~vv~g~~-----~gkVr~m~---~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~ 501 (742)
T CHL00189 453 IIVIGTS-----YAKIRGMI---NSLGNKINLATPSSVVEIWGLSSVPATGEHFQVF 501 (742)
T ss_pred EEEECCc-----ceEEEEEE---cCCCcCccEEcCCCceEecCcccCCCCCCEEEEe
Confidence 9998762 23666664 667788999999999999999 457789999643
No 53
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-32 Score=271.58 Aligned_cols=250 Identities=23% Similarity=0.307 Sum_probs=218.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
.|+..||.++|||||+.++.+.. .|..++|++||+|++........++..+.|+|.|||++|...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~-------------~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGV-------------TDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccc-------------cccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHH
Confidence 48899999999999999997642 36788999999999999999999999999999999999999999
Q ss_pred HHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcE-EEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeee
Q 010392 171 RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYA 249 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~-ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~ 249 (512)
..+...|.++||||+++|+..|+.+++..+..++++- ++|+||+|+.+.. ++.+.+.+....+. ..+.++|.+
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~--r~e~~i~~Il~~l~----l~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA--RIEQKIKQILADLS----LANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHH--HHHHHHHHHHhhcc----ccccccccc
Confidence 9999999999999999999999999999999999874 9999999987532 22222333332222 335678999
Q ss_pred ccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCc
Q 010392 250 SGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDS 329 (512)
Q Consensus 250 Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~ 329 (512)
|+.+|. |+++|-+.|.+....+..+.+.||+++|++.|...+.|+|+.|.++||++++||++++.|.++.
T Consensus 143 s~~~g~----------GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~ 212 (447)
T COG3276 143 SAKTGR----------GIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKE 212 (447)
T ss_pred ccccCC----------CHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCe
Confidence 999999 9999999998877656678899999999999999999999999999999999999999999998
Q ss_pred eeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCeEecCC
Q 010392 330 CRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKV 376 (512)
Q Consensus 330 ~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~~~~ 376 (512)
. +|++| +.+.+++++|.||++|++ .+. +++.+||.|++++
T Consensus 213 v---~VRsI----q~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 213 V---RVRSI----QAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred E---EEEee----eecCcchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 8 99999 677889999999999999 454 4799999999876
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=3.1e-30 Score=240.55 Aligned_cols=183 Identities=37% Similarity=0.499 Sum_probs=157.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEE--ECCeeEEEEeCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSIT--YNDTKINIIDTPGH 162 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~--~~~~~i~liDtPG~ 162 (512)
++++||+++||.|+|||||+++|++..+......... .+++|.++.|+++++|+......+. +.++.++|+|||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 3689999999999999999999999887655433221 4568999999999999999999999 99999999999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHH-HHhcCCccc
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELF-IELNATDEQ 241 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~ 241 (512)
.+|...+..++..+|++|+|||+.+|+..++.+++..+...++|+++|+||+|+...++.+..+++.+.+ +..+... .
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~-~ 159 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG-E 159 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT-T
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc-c
Confidence 9999999999999999999999999999999999999999999999999999999666677777777444 4443321 1
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
..+|++++||++|+ |+..|++.|.+++|+
T Consensus 160 ~~~~vi~~Sa~~g~----------gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 160 EIVPVIPISALTGD----------GIDELLEALVELLPS 188 (188)
T ss_dssp STEEEEEEBTTTTB----------THHHHHHHHHHHS--
T ss_pred ccceEEEEecCCCC----------CHHHHHHHHHHhCcC
Confidence 35799999999999 999999999999985
No 55
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.3e-28 Score=233.71 Aligned_cols=259 Identities=27% Similarity=0.332 Sum_probs=207.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC---------------
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--------------- 151 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--------------- 151 (512)
+...||+++||+++|||||..+|.+- ..|.+.+|.+||+||...+.......
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~ 74 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPK 74 (415)
T ss_pred CcceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCC
Confidence 45789999999999999999999763 35788999999999988766433210
Q ss_pred -----------eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHcCC-cEEEEEeccCCCC
Q 010392 152 -----------TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEFGH-AVVVVVNKIDRPS 218 (512)
Q Consensus 152 -----------~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~ 218 (512)
+++.|+|+|||+-+...+.+.....|++||||+|++. .++||++|+-.+.-.++ .++++-||+|+..
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 2689999999999999999999999999999999985 68999999999998886 6899999999985
Q ss_pred CC-chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEe
Q 010392 219 AR-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLE 297 (512)
Q Consensus 219 ~~-~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~ 297 (512)
.+ ..+..++++++.+.-.. -+.|++++||..+. +++.|+++|.+++|.|..+.+.|.+++|.+.|
T Consensus 155 ~E~AlE~y~qIk~FvkGt~A----e~aPIIPiSA~~~~----------NIDal~e~i~~~IptP~rd~~~~p~m~v~RSF 220 (415)
T COG5257 155 RERALENYEQIKEFVKGTVA----ENAPIIPISAQHKA----------NIDALIEAIEKYIPTPERDLDKPPRMYVARSF 220 (415)
T ss_pred HHHHHHHHHHHHHHhccccc----CCCceeeehhhhcc----------CHHHHHHHHHHhCCCCccCCCCCceEEEEeec
Confidence 32 23445556665543333 25699999999999 89999999999999999999999999999888
Q ss_pred eeC--------CCcEEEEEEEeecccCCCCEEEEccCC-----Ccee----eeeeeeeEeeecCceeecceecCCCEEEE
Q 010392 298 YDE--------HKGRIAIGRLHAGVLRKGMEVRVCTSE-----DSCR----YARISELFVYEKFSRVSAEIVAAGDICAV 360 (512)
Q Consensus 298 ~~~--------~~G~v~~grV~sG~l~~g~~v~~~~~~-----~~~~----~~kV~~i~~~~g~~~~~v~~a~aGdiv~i 360 (512)
..+ ..|-|.-|.+.+|.|+.||+|.+.|.= ++.. ..+|.+|+ ....++++|.+|-.+++
T Consensus 221 DVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~----ag~~~~~ea~PGGLvgv 296 (415)
T COG5257 221 DVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQ----AGGEDVEEARPGGLVGV 296 (415)
T ss_pred ccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEE----eCCeeeeeccCCceEEE
Confidence 643 467899999999999999999998762 1111 23566663 44578999999999999
Q ss_pred -ccCC------ccccCCeEecCC
Q 010392 361 -CGID------DIQIGETIADKV 376 (512)
Q Consensus 361 -~~l~------~~~~Gdtl~~~~ 376 (512)
+++| |.-.|.++..++
T Consensus 297 GT~lDP~ltKaD~L~G~V~G~pG 319 (415)
T COG5257 297 GTKLDPTLTKADALVGQVVGKPG 319 (415)
T ss_pred ecccCcchhhhhhhccccccCCC
Confidence 6776 333455554444
No 56
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.97 E-value=4.7e-29 Score=241.37 Aligned_cols=274 Identities=23% Similarity=0.330 Sum_probs=226.2
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-------------
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND------------- 151 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~------------- 151 (512)
......+|++.||.++|||||+..|......- .......++|-.+.|-++|.|-+.+...+.+++
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DD--G~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDD--GDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCC--CCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 34567889999999999999999997654432 222235688999999999998888777766653
Q ss_pred ----------eeEEEEeCCCCCCChHHHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC-
Q 010392 152 ----------TKINIIDTPGHSDFGGEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS- 218 (512)
Q Consensus 152 ----------~~i~liDtPG~~~~~~~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~- 218 (512)
.-+.|+||-||+.|...+.+.+ ...|..+|++.|++|++..+++++-.+...++|+|++++|+|+..
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~d 270 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPD 270 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcH
Confidence 2478999999999999888877 457999999999999999999999999999999999999999974
Q ss_pred CCchhhHhhhHHHHHHhcCC------------------ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 219 ARPDYVINSTFELFIELNAT------------------DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.++..+.+++...++..+.- ....-+|+|.+|+.+|. |+ ++|+.+...+|.
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~----------Gl-dlL~e~f~~Lp~ 339 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE----------GL-DLLDEFFLLLPK 339 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc----------cH-HHHHHHHHhCCc
Confidence 45677778887776533210 11224799999999998 76 567777788887
Q ss_pred CC-CcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCC-CceeeeeeeeeEeeecCceeecceecCCCEE
Q 010392 281 PR-IEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE-DSCRYARISELFVYEKFSRVSAEIVAAGDIC 358 (512)
Q Consensus 281 p~-~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~-~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv 358 (512)
.. .+..+||.++|++++...++|+++.|.|.+|.|..||+|++.|.. .+++..+|++| ..++..++.|.||+|+
T Consensus 340 rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSI----emh~~rvdsa~aG~ii 415 (527)
T COG5258 340 RRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSI----EMHHYRVDSAKAGSII 415 (527)
T ss_pred ccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEE----EEeeEEeccccCCcEE
Confidence 74 467789999999999999999999999999999999999998875 56777799999 6788899999999999
Q ss_pred EE--ccCC--ccccCCeEecC
Q 010392 359 AV--CGID--DIQIGETIADK 375 (512)
Q Consensus 359 ~i--~~l~--~~~~Gdtl~~~ 375 (512)
++ .|+. .+++|.+|+..
T Consensus 416 g~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 416 GIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred EEEecccCHHHHhcceEecCC
Confidence 98 5664 59999999975
No 57
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=9e-29 Score=230.97 Aligned_cols=191 Identities=29% Similarity=0.388 Sum_probs=156.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..||+++||+|+|||||+++|++...............+|..++|++||+|++.....+.+++..++|+|||||.+|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 46899999999999999999998643221111122457899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--chhhHhhhHHHHHHhcCCccccccc
Q 010392 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
+..++..+|++++|+|+.+|+..++++++..+...++| +|+|+||+|+.... .+.+.+++.+.+..++... ..+|
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~--~~v~ 159 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG--DNTP 159 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc--cCCe
Confidence 99999999999999999999999999999999999997 77999999996321 2334456777776665532 2689
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
++++||++|.|..+...|.+++..|+++|.+.+|.|
T Consensus 160 iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 160 IVRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCCC
Confidence 999999999987654455556889999998887765
No 58
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.96 E-value=1.2e-28 Score=237.26 Aligned_cols=181 Identities=39% Similarity=0.575 Sum_probs=159.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
||+++||.|+|||||+++|++..+.+...+.+. .+++|+.++|++||+|+......+.|++.++++||||||.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 689999999999999999999888766554433 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc------------
Q 010392 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN------------ 236 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~------------ 236 (512)
+..+++.+|++++|+|+.++...++..+|..+...++|+++|+||+|+..+++.++++++++.+..-.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 160 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNI 160 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeee
Confidence 99999999999999999999999999999999999999999999999998888888888887663200
Q ss_pred ----------------CCcc--------------------------ccccceeeeccccCccCCCCCCcCCCchhhHHHH
Q 010392 237 ----------------ATDE--------------------------QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESI 274 (512)
Q Consensus 237 ----------------~~~~--------------------------~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i 274 (512)
.+++ ..-+||+++||.++. |+..||+.|
T Consensus 161 ~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~----------Gv~~ll~~~ 230 (237)
T cd04168 161 CETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGI----------GIEELLEGI 230 (237)
T ss_pred eeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCc----------CHHHHHHHH
Confidence 0000 012799999999999 999999999
Q ss_pred HHhCCCC
Q 010392 275 MRCIPGP 281 (512)
Q Consensus 275 ~~~lp~p 281 (512)
.+++|+|
T Consensus 231 ~~~~p~~ 237 (237)
T cd04168 231 TKLFPTS 237 (237)
T ss_pred HHhcCCC
Confidence 9999987
No 59
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-28 Score=247.38 Aligned_cols=251 Identities=29% Similarity=0.412 Sum_probs=207.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCCCh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFG 166 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~~ 166 (512)
+.+-|-|+||+++|||||+.+|-......... .|||.....+.+.. ++.+++|+|||||.-|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~----------------GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA----------------GGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhc----------------CCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 56779999999999999999997655443222 27777776665554 46899999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
.+..+..+.+|.++||+.+.+|+.+||.+.+..++..++|+++.+||+|.++++++.+..++... .+..++-..++++
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~--gi~~E~~GGdVQv 293 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ--GIVVEDLGGDVQV 293 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc--CccHHHcCCceeE
Confidence 99999999999999999999999999999999999999999999999999999888877766542 1222333457899
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHHHh--CCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEc
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRC--IPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVC 324 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~--lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~ 324 (512)
+++||++|. |++.|.++++-. +-.-+.++.+|+.+.|.....++++|.++..-|-.|+|++|+.+...
T Consensus 294 ipiSAl~g~----------nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G 363 (683)
T KOG1145|consen 294 IPISALTGE----------NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAG 363 (683)
T ss_pred EEeecccCC----------ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEe
Confidence 999999999 888888777643 23334567899999999999999999999999999999999988753
Q ss_pred cCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcccc-CCeEec
Q 010392 325 TSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI-GETIAD 374 (512)
Q Consensus 325 ~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~-Gdtl~~ 374 (512)
. .++||+.|+-. +..++++|.||.-+.|.|++++.. ||-+..
T Consensus 364 ~-----~w~KVr~l~D~---nGk~i~~A~Ps~pv~V~GwkdlP~aGD~vle 406 (683)
T KOG1145|consen 364 K-----SWCKVRALFDH---NGKPIDEATPSQPVEVLGWKDLPIAGDEVLE 406 (683)
T ss_pred c-----hhhhhhhhhhc---CCCCccccCCCCceEeecccCCCCCCceEEE
Confidence 2 24689998754 456899999999999999988654 888743
No 60
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.96 E-value=6.2e-28 Score=259.08 Aligned_cols=274 Identities=21% Similarity=0.228 Sum_probs=189.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee----eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK----ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~----~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
+.+.|+++||+|+|||||+++|.+........+.++ ..+.+....+...+.+.......+.+. .++|||||||+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccC--CEEEEECCChH
Confidence 456799999999999999999976544333222211 111111111111111111000011111 37999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC-CC---------------------c
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS-AR---------------------P 221 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~-~~---------------------~ 221 (512)
+|...+..++..+|++++|+|+.+|+..++.+++..+...++|+++++||+|+.. +. +
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f 162 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQEL 162 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999989999999999999852 11 0
Q ss_pred hhhHhhhHHHHHHhcCCcc--------ccccceeeeccccCccCCCCCCcCCCchhhHHHHHH----hCCCC-CCccccc
Q 010392 222 DYVINSTFELFIELNATDE--------QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR----CIPGP-RIEKDGA 288 (512)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~--------~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~----~lp~p-~~~~~~p 288 (512)
++.+.++...+...+...+ ...++++++||++|. |+.+|++.+.. +++.+ ..+.+.|
T Consensus 163 ~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe----------Gi~dLl~~i~~~~~~~l~~~l~~~~~~~ 232 (586)
T PRK04004 163 EEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE----------GIPDLLMVLAGLAQRYLEERLKIDVEGP 232 (586)
T ss_pred HHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC----------ChHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 1111122222333332221 235789999999999 88888887764 23332 3456789
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeee--------cCceeecceecCCCEEEE
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYE--------KFSRVSAEIVAAGDICAV 360 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~--------g~~~~~v~~a~aGdiv~i 360 (512)
+++.|++++.+++.|++++++|.+|+|++||.|.+.+.+... ..+|++|+... +.....++++.|..-|-|
T Consensus 233 ~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i-~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i 311 (586)
T PRK04004 233 GKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPI-VTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKI 311 (586)
T ss_pred eEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcc-eEEEEEEecCcchhhccccccccccccccCCCCceEE
Confidence 999999999999999999999999999999999998886532 24888987642 123456777777766655
Q ss_pred --ccCCccccCCeEec
Q 010392 361 --CGIDDIQIGETIAD 374 (512)
Q Consensus 361 --~~l~~~~~Gdtl~~ 374 (512)
.|++++..|+.+.-
T Consensus 312 ~~~gl~~~~~g~~~~v 327 (586)
T PRK04004 312 SAPDLEDALAGSPLRV 327 (586)
T ss_pred EeCCccccCCCCeEEE
Confidence 48888878888753
No 61
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=2.6e-28 Score=231.70 Aligned_cols=190 Identities=39% Similarity=0.570 Sum_probs=152.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC----------CeeEEEEeC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN----------DTKINIIDT 159 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~----------~~~i~liDt 159 (512)
|||+++||+++|||||+++|+...+..........+++|..+.|++||+|+......+.|. +..++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 6899999999999999999999887655444344689999999999999999988777776 678999999
Q ss_pred CCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC----CCchh-------hHhhh
Q 010392 160 PGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS----ARPDY-------VINST 228 (512)
Q Consensus 160 PG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~----~~~~~-------~~~~~ 228 (512)
|||.+|..++..+++.+|++++|+|+.+|...+++++++.+...++|+++|+||+|+.. ...++ +++++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999862 22223 33333
Q ss_pred HHHHHHhcCC------cccccc-c----eeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 229 FELFIELNAT------DEQCDF-Q----AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 229 ~~~~~~~~~~------~~~~~~-p----vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
...+..+..+ ++...+ | |++.||+.||... .. .-..+..+|+.|++++|+|
T Consensus 161 n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~-~~-~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFT-II-KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred hHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEec-cc-cccchHHHHHHHHhhCCCC
Confidence 3333333211 112234 5 8999999999763 22 2235679999999999987
No 62
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.96 E-value=4.1e-28 Score=227.37 Aligned_cols=193 Identities=68% Similarity=1.097 Sum_probs=167.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
+|+|+++|++|+|||||+++|++..+.......+..+++|..+.|..+|+|+......+.+++..+++|||||+.+|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 68999999999999999999998654444444445677899999999999999998899999999999999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceee
Q 010392 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIY 248 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~ 248 (512)
+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...+.....+++.+.+..++...+...+++++
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 161 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLY 161 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEE
Confidence 99999999999999999998878888888888788999999999999987666667777777776665544555789999
Q ss_pred eccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 249 ASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 249 ~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
+||++|.++.+......++.+|++.|.+++|.|
T Consensus 162 ~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 162 ASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred eehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 999999999888888999999999999999976
No 63
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.96 E-value=2.5e-28 Score=238.97 Aligned_cols=142 Identities=42% Similarity=0.559 Sum_probs=129.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
||+++||+|+|||||+++|++..+.+...+.+. .+++|+.++|++||+|+......+.|++.+++|||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 699999999999999999999888765544443 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHH
Q 010392 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELF 232 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~ 232 (512)
+..+++.+|++|+|+|+..++..++..+|..+...++|+++|+||+|+.+++++...+++++.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l 144 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKL 144 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998877777777777655
No 64
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4e-28 Score=231.74 Aligned_cols=251 Identities=24% Similarity=0.297 Sum_probs=206.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC---------CeeEEEEe
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---------DTKINIID 158 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---------~~~i~liD 158 (512)
...|++++||.++|||||..+|..-.. ....|.++...+||+|.+.....+... ...++++|
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~S---------TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvD 76 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGS---------TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVD 76 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhcc---------chhhccCCcccccceeEeecceeeecccccccCccccceeEEEe
Confidence 458999999999999999999976422 224588889999999999877665432 24679999
Q ss_pred CCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhhhHHHHH-Hhc
Q 010392 159 TPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFELFI-ELN 236 (512)
Q Consensus 159 tPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~~~~~~~-~~~ 236 (512)
+|||..............|..++|||+..|.+.|+.+++-.........+||+||+|....+ ....+++...... .+.
T Consensus 77 CPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 77 CPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred CCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 99999998888888899999999999999999999999988888888999999999986432 1222333322222 122
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccC
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLR 316 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~ 316 (512)
......+.|++++||..|. ....++.+|.+.+...+-.|.++.++||.+.|++++..++.|+|..|.|.+|.|+
T Consensus 157 ~t~f~g~~PI~~vsa~~G~------~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ 230 (522)
T KOG0461|consen 157 STGFDGNSPIVEVSAADGY------FKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLR 230 (522)
T ss_pred hcCcCCCCceeEEecCCCc------cchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEe
Confidence 1122235799999999994 2233899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE
Q 010392 317 KGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV 360 (512)
Q Consensus 317 ~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i 360 (512)
.|+.|.+..-++.- ||++| ++.+.+|.+|.+||..++
T Consensus 231 ln~~iE~PAL~e~r---kVKsl----qmf~~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 231 LNTEIEFPALNEKR---KVKSL----QMFKQRVTSAAAGDRAGF 267 (522)
T ss_pred cCcEEeecccchhh---hhhhH----HHHhhhhhhhhcccceee
Confidence 99999998887665 89998 667789999999999998
No 65
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.96 E-value=6.1e-28 Score=236.08 Aligned_cols=144 Identities=34% Similarity=0.549 Sum_probs=130.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccce------eeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV------KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~------~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
+|||+++||+|+|||||+++|++..+.+...+.+ ...++|+.++|++||+++......+.|++.++++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 6899999999999999999999988877765544 3567899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHH
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELF 232 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~ 232 (512)
.+|..++..+++.+|++|+|+|+..++..++..+|+.+...++|+++|+||+|+..+++..+++++++.+
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l 151 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEEL 151 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988899999999999998877766677776654
No 66
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-27 Score=243.12 Aligned_cols=251 Identities=25% Similarity=0.337 Sum_probs=204.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC---CeeEEEEeCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGHSD 164 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~~~i~liDtPG~~~ 164 (512)
+.+-|+++||.++|||||+..+-......... .|+|.....+.+.++ ...++|+|||||+-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea----------------GGITQhIGA~~v~~~~~~~~~itFiDTPGHeA 67 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA----------------GGITQHIGAYQVPLDVIKIPGITFIDTPGHEA 67 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccC----------------CceeeEeeeEEEEeccCCCceEEEEcCCcHHH
Confidence 45669999999999999999997665543332 278888888888874 46899999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
|..+..+....+|.++||+|+.+|+.+||.+.++.++..++|++|++||+|+.+++++.+..++.+. .+..+....++
T Consensus 68 Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~--gl~~E~~gg~v 145 (509)
T COG0532 68 FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY--GLVPEEWGGDV 145 (509)
T ss_pred HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc--CCCHhhcCCce
Confidence 9999999999999999999999999999999999999999999999999999988887777666553 22222333457
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC--CCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEE
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI--PGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l--p~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~ 322 (512)
.++++||++|. |+.+||+.++-.- -.-+..++.+..+.|..+..+++.|.++..-|++|+|+.||.|.
T Consensus 146 ~~VpvSA~tg~----------Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv 215 (509)
T COG0532 146 IFVPVSAKTGE----------GIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIV 215 (509)
T ss_pred EEEEeeccCCC----------CHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEE
Confidence 89999999999 9999998877432 12334667889999999999999999999999999999999999
Q ss_pred EccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcccc-CCeEec
Q 010392 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI-GETIAD 374 (512)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~-Gdtl~~ 374 (512)
...... +|..++ .....+++.+.++--+.+.+++++.. ||....
T Consensus 216 ~g~~~g-----~I~t~v---~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v 260 (509)
T COG0532 216 AGGEYG-----RVRTMV---DDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIV 260 (509)
T ss_pred EccCCC-----ceEEee---hhcCCCccccCCCCCeEEeccccccccCceEEe
Confidence 876543 566664 34456778888887777888876443 666543
No 67
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.95 E-value=7.3e-27 Score=249.70 Aligned_cols=259 Identities=26% Similarity=0.271 Sum_probs=186.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE------------------EC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT------------------YN 150 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~------------------~~ 150 (512)
.+-|+++||+|+|||||+++|++........+. +|.......+. .+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~gg----------------iTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~ 67 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGG----------------ITQHIGATEIPMDVIEGICGDLLKKFKIRLK 67 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCc----------------eecccCeeEeeeccccccccccccccccccc
Confidence 456999999999999999999987554333222 22211111111 11
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-------c--
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-------P-- 221 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-------~-- 221 (512)
...++|||||||++|...+..+++.+|++++|+|++++...++.+.+..++..++|+++++||+|+.... +
T Consensus 68 ~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 68 IPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred cCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHH
Confidence 1248999999999999999999999999999999999999999999999988999999999999996311 0
Q ss_pred ------hhhHhhhH-------HHHHHhcCCc--------cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh---
Q 010392 222 ------DYVINSTF-------ELFIELNATD--------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC--- 277 (512)
Q Consensus 222 ------~~~~~~~~-------~~~~~~~~~~--------~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~--- 277 (512)
..+...+. ..+.+.+... ....+|++++||++|+ |+++|+++|...
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe----------GideLl~~l~~l~~~ 217 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE----------GIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC----------ChhHHHHHHHHHHHH
Confidence 00111111 1122222211 1235799999999999 999998887642
Q ss_pred -CC-CCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeec--------Ccee
Q 010392 278 -IP-GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK--------FSRV 347 (512)
Q Consensus 278 -lp-~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g--------~~~~ 347 (512)
++ .-..+.+.|+++.|..++.+.+.|.++.+.|.+|+|++||.|.+.+.+... .++|+.|+...+ .+..
T Consensus 218 ~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i-~~kVr~l~~~~~l~e~r~~~~~~~ 296 (590)
T TIGR00491 218 YLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVI-VTRVRALLKPRPLEEMRESRKKFQ 296 (590)
T ss_pred HhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcc-cEEEEEecCCCccccccccccccC
Confidence 32 123356789999999999999999999999999999999999999987532 348888875432 1234
Q ss_pred ecceecCC--CEEEEccCCccccCCeEec
Q 010392 348 SAEIVAAG--DICAVCGIDDIQIGETIAD 374 (512)
Q Consensus 348 ~v~~a~aG--div~i~~l~~~~~Gdtl~~ 374 (512)
.++++.|. --+.+.|+++...|+.+.-
T Consensus 297 ~~~~~~~~~~~~v~~~~l~~~~aG~~~~~ 325 (590)
T TIGR00491 297 KVDEVVAAAGVKIAAPGLDDVMAGSPIRV 325 (590)
T ss_pred CcceecCCCceeEEecCCCCCCCCCEEEE
Confidence 56665544 4444578888878988753
No 68
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.7e-28 Score=235.41 Aligned_cols=285 Identities=22% Similarity=0.304 Sum_probs=231.0
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCc---------------CccceeeeeeccchhhhhcceeEEeeeeEEEE
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFR---------------DNQTVKERIMDSNDLERERGITILSKNTSITY 149 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~---------------~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 149 (512)
+++...|++++||+++||||+-+.+++..+... +......|++|...+|+++|-|+......++.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 357789999999999999999998876655422 11223389999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCc-------hhHHHHHHHHHHcCC-cEEEEEeccCCCCC--
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGH-AVVVVVNKIDRPSA-- 219 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~-------~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~-- 219 (512)
...++++.|+|||..|...+.....+||..++|+++..|.+ .|++++...++..++ ..|+++||||-+..
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 99999999999999999999999999999999999876433 489999999999887 58889999997632
Q ss_pred ---CchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCC--CcCCCchhhHHHHHHhCCCCCCcccccceeeeE
Q 010392 220 ---RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD--NLADDLGPLFESIMRCIPGPRIEKDGALQMLAT 294 (512)
Q Consensus 220 ---~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~--~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~ 294 (512)
++++..+.+..++..++.... .+..++++|+.+|.++.+.. ...|...+++-..++.+|...+..++||++.|.
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~-~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~ 313 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPK-PDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVA 313 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCC-CCceeeecccccccchhhcccccCCcccCCccceehhccCcccccCCCCEEeehh
Confidence 345566666666665555432 34568999999999887654 344444444333344489888899999999998
Q ss_pred EEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC--ccccCC
Q 010392 295 NLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGE 370 (512)
Q Consensus 295 ~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~--~~~~Gd 370 (512)
+-+.| .|++++|+|.||+++.||.+.++|.+... .|.+|+. ...+++.+.|||.+-| .|++ ++..|.
T Consensus 314 ~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~v---eV~~I~~----ddvE~~~~~pGenvk~rlkgieeedi~~Gf 384 (501)
T KOG0459|consen 314 NKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNV---EVLGIYS----DDVETDRVAPGENVKLRLKGIEEEDISPGF 384 (501)
T ss_pred hhccc--cceEEEEEecccceecCCeEEEccCCcce---EEEEEec----ccceeeeccCCcceEEEecccchhhccCce
Confidence 77766 78999999999999999999999999887 8888862 3678999999999988 5764 799999
Q ss_pred eEecCCCCC
Q 010392 371 TIADKVSGK 379 (512)
Q Consensus 371 tl~~~~~~~ 379 (512)
+||++.++.
T Consensus 385 iL~~~~n~~ 393 (501)
T KOG0459|consen 385 ILCSPNNPC 393 (501)
T ss_pred EEecCCCcc
Confidence 999988753
No 69
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.94 E-value=1.8e-26 Score=220.30 Aligned_cols=185 Identities=26% Similarity=0.308 Sum_probs=148.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccc--e--------e-----eeeeccchhhhhcceeEEeeeeEEEECCeeEE
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT--V--------K-----ERIMDSNDLERERGITILSKNTSITYNDTKIN 155 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~--~--------~-----~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~ 155 (512)
||+++||+|+|||||+++|++..+.+..... + . .+++|..+.|++||+|++.....+.+++.+++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 6899999999999999999998876554321 0 0 24899999999999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHhccEEEEEEeCCC-------CCchhHHHHHHHHHHcC-CcEEEEEeccCCCCC-----Cch
Q 010392 156 IIDTPGHSDFGGEVERILNMVEGVLLVVDSVE-------GPMPQTRFVLKKALEFG-HAVVVVVNKIDRPSA-----RPD 222 (512)
Q Consensus 156 liDtPG~~~~~~~~~~~~~~~d~~llvida~~-------g~~~~~~~~l~~~~~~~-~p~ivviNK~Dl~~~-----~~~ 222 (512)
+||||||.+|...+..++..+|++|+|+|+.+ +...++.+++..+...+ .|+++|+||+|+..+ ++.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999988 45668888888887777 578999999999732 234
Q ss_pred hhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCC---CcCCCchhhHHHHHHhC
Q 010392 223 YVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD---NLADDLGPLFESIMRCI 278 (512)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~---~~~~gi~~Ll~~i~~~l 278 (512)
.+.+++...+..++.. ...+|++++||++|.|+.++. .|..| ..|+++|....
T Consensus 161 ~i~~~l~~~l~~~~~~--~~~~~ii~iSA~tg~gi~~~~~~~~w~~g-~~l~~~l~~~~ 216 (219)
T cd01883 161 EIKKELSPFLKKVGYN--PKDVPFIPISGLTGDNLIEKSENMPWYKG-PTLLEALDSLE 216 (219)
T ss_pred HHHHHHHHHHHHcCCC--cCCceEEEeecCcCCCCCcCCCCCCCccC-CcHHHHHhCCC
Confidence 4555565555554332 125789999999999998775 35556 67777776543
No 70
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.93 E-value=1.7e-25 Score=211.85 Aligned_cols=187 Identities=26% Similarity=0.316 Sum_probs=144.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCc--c------------c-eeeeeeccchhhhhcceeEEeeeeEEEECCeeEE
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDN--Q------------T-VKERIMDSNDLERERGITILSKNTSITYNDTKIN 155 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~--~------------~-~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~ 155 (512)
||+++||+|+|||||+++|++..+.+... . . -..+++|..+.|+++|+|++.....+.+++.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999988765521 1 0 1267899999999999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCCc---hhhHhhhHHH
Q 010392 156 IIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSARP---DYVINSTFEL 231 (512)
Q Consensus 156 liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~~---~~~~~~~~~~ 231 (512)
||||||+.+|...+..++..+|++|+|+|+..+...++..++..+...+.| +|+|+||+|+..... .....++.+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 999999999988888899999999999999999888888888888887765 777999999975332 2344455555
Q ss_pred HHHhcCCccccccceeeeccccCccCCCCC-CcCCCchhhHHHHHHhCCCC
Q 010392 232 FIELNATDEQCDFQAIYASGIQGKAGLSPD-NLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 232 ~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~-~~~~gi~~Ll~~i~~~lp~p 281 (512)
+..++.. .++++++||++|.|+.+.. ...|.-.+.|-..++.+++|
T Consensus 161 ~~~~~~~----~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 161 AAKLGIE----DITFIPISALDGDNVVSRSENMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHcCCC----CceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHHhcCCCC
Confidence 5444432 3468999999999887654 23333334333344555544
No 71
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.3e-24 Score=200.47 Aligned_cols=174 Identities=43% Similarity=0.638 Sum_probs=139.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-----CCeeEEEEeCCCCCC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-----NDTKINIIDTPGHSD 164 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-----~~~~i~liDtPG~~~ 164 (512)
|||+++|++|+|||||+++|++..+...... ....+.|..+.++++|+|+......+.+ .+..++||||||+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE-MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC-CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 6899999999999999999999765543322 2356788888999999999877666655 456789999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
|...+..++..+|++|+|+|+.++...++...|..+...++|+++|+||+|+...+.....+++.+.+ +.. ..
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---~~~----~~ 152 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVL---GLD----PS 152 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHh---CCC----cc
Confidence 99999999999999999999998877777777777777789999999999986544333333333322 211 12
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
+++++||++|. |+++|++.+.+.+|.|
T Consensus 153 ~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 153 EAILVSAKTGL----------GVEDLLEAIVERIPPP 179 (179)
T ss_pred cEEEeeccCCC----------CHHHHHHHHHhhCCCC
Confidence 48999999999 9999999999999876
No 72
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.92 E-value=8.2e-25 Score=215.37 Aligned_cols=142 Identities=32% Similarity=0.444 Sum_probs=126.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
||+++||+|+|||||+++|++..+...+.+.+. .+++|+.+.|+++++++......+.|++.++++|||||+.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 689999999999999999998877665544432 567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHH
Q 010392 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELF 232 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~ 232 (512)
+..++..+|++++|+|+..+...++...|+.+...++|+++|+||+|+..+++...++++++.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~ 144 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAF 144 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998877766677666654
No 73
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.92 E-value=5.6e-24 Score=202.29 Aligned_cols=190 Identities=34% Similarity=0.444 Sum_probs=145.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcC---ccceeeeeeccchhhhhcceeEEeeeeEEEEC-----CeeEEEEeCCC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRD---NQTVKERIMDSNDLERERGITILSKNTSITYN-----DTKINIIDTPG 161 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~---~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-----~~~i~liDtPG 161 (512)
|||+++||+|+|||||+++|+...+.... ......+++|..+.|+++|+++......+.+. ...+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 68999999999999999999998876553 22223678899999999999998888777654 36899999999
Q ss_pred CCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC-----------CchhhHhhhHH
Q 010392 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-----------RPDYVINSTFE 230 (512)
Q Consensus 162 ~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~-----------~~~~~~~~~~~ 230 (512)
|.+|...+..++..+|++++|+|+.++...++..++..+...++|+++|+||+|+... .+.+.++++..
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988778888888887788999999999998621 12233344444
Q ss_pred HHHHhcCCccccccc----eeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 231 LFIELNATDEQCDFQ----AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 231 ~~~~~~~~~~~~~~p----vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.+..+.......-+| +++.||+.+|+..- .. -.++.+|++.|++.+|+|
T Consensus 161 ~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~-~~-~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTL-ES-FAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHhcCCCceEeccCCCeEEEEecCCCeEEec-HH-HHhhhhHHHHHHhhCCCC
Confidence 444443322111233 78899999984421 11 134459999999999987
No 74
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=6.9e-24 Score=198.42 Aligned_cols=174 Identities=26% Similarity=0.294 Sum_probs=137.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--------------CeeEE
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--------------DTKIN 155 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--------------~~~i~ 155 (512)
.||+++|++|+|||||+++|+.... ...+|....|+++|+|+......+.+. +..++
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQIT 71 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEE
Confidence 3799999999999999999987521 234677888999999999888777776 67899
Q ss_pred EEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC-CchhhHhhhHHHHHH
Q 010392 156 IIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-RPDYVINSTFELFIE 234 (512)
Q Consensus 156 liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~-~~~~~~~~~~~~~~~ 234 (512)
+|||||+.++..........+|++++|+|+.++...++.+.+..+...++|+++|+||+|+... ..+...+++.+.+..
T Consensus 72 i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 72 LVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999888777777788899999999999988888777777677678999999999998743 223344455444332
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
.........++++++||++|. |+.+|++.+.+.+|.|.
T Consensus 152 ~~~~~~~~~~~vi~iSa~~g~----------gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 152 TLEKTRFKNSPIIPVSAKPGG----------GEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHhcCcCCCCEEEEeccCCC----------CHHHHHHHHHhcccccc
Confidence 211111125689999999999 99999999999999884
No 75
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=3.7e-23 Score=192.05 Aligned_cols=181 Identities=39% Similarity=0.548 Sum_probs=152.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|.+|+|||||+++|++.............+.++....+..+++++......+.+.+..++||||||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999998877666666667788888889999999988888888899999999999999999999
Q ss_pred HHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC-CCchhhHhhhHHHHHHhcCC-------cccc
Q 010392 171 RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS-ARPDYVINSTFELFIELNAT-------DEQC 242 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~-~~~~~~~~~~~~~~~~~~~~-------~~~~ 242 (512)
.++..+|++++|+|+.++...+..+++..+...++|+++|+||+|+.. .+.....+++.+.+...+.. ....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 999999999999999998888888888888888999999999999975 34445556666655443321 0123
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
..+++++||++|. |+.++++.+.+.+|.|
T Consensus 161 ~~~v~~~Sa~~g~----------gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 161 LVPIVPGSALTGI----------GVEELLEAIVEHLPPP 189 (189)
T ss_pred cceEEEEecccCc----------CHHHHHHHHHhhCCCC
Confidence 5789999999999 9999999999999865
No 76
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.91 E-value=7.7e-23 Score=228.35 Aligned_cols=248 Identities=21% Similarity=0.208 Sum_probs=188.2
Q ss_pred cHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe------------------eEEEEeCCCC
Q 010392 101 GKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT------------------KINIIDTPGH 162 (512)
Q Consensus 101 GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~------------------~i~liDtPG~ 162 (512)
+||||+.+|.+..... +...|+|.......+.++.. .++|||||||
T Consensus 473 ~KTtLLD~iR~t~v~~----------------~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh 536 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAK----------------KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH 536 (1049)
T ss_pred ccccHHHHHhCCCccc----------------ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc
Confidence 3999999997654432 22347888877776665421 3899999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC-CCCc--------------hhhHhh
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP-SARP--------------DYVINS 227 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~-~~~~--------------~~~~~~ 227 (512)
.+|.......+..+|++++|+|+.+|+..++.+++..+...++|+++|+||+|+. ++.. +...++
T Consensus 537 e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e 616 (1049)
T PRK14845 537 EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE 616 (1049)
T ss_pred HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence 9998888888889999999999999999999999999999999999999999996 3321 122233
Q ss_pred hHHH-------HHHhcCCc--------cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC-----CCCCcccc
Q 010392 228 TFEL-------FIELNATD--------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP-----GPRIEKDG 287 (512)
Q Consensus 228 ~~~~-------~~~~~~~~--------~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp-----~p~~~~~~ 287 (512)
+... +.+.+... ....+|++++||++|. |+..|++.|....+ ....+.+.
T Consensus 617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe----------GId~Ll~~l~~l~~~~l~~~L~~~~~~ 686 (1049)
T PRK14845 617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE----------GIPELLMMVAGLAQKYLEERLKLNVEG 686 (1049)
T ss_pred HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC----------CHHHHHHHHHHhhHHhhhhhhccCCCC
Confidence 2211 22333221 1346799999999999 99999988764432 13344678
Q ss_pred cceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeee--------cCceeecceecCCCEEE
Q 010392 288 ALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYE--------KFSRVSAEIVAAGDICA 359 (512)
Q Consensus 288 p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~--------g~~~~~v~~a~aGdiv~ 359 (512)
|+++.|.+++.+++.|+++.+.|++|+|++||.|.+++.++.. .++|+.|+... +.....++++.|+.-|-
T Consensus 687 ~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i-~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vk 765 (1049)
T PRK14845 687 YAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVI-VTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVK 765 (1049)
T ss_pred ceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcc-eEEEEEecCcccccccccccccccccccccCCCceE
Confidence 9999999999999999999999999999999999999876532 45888886321 12345778888887777
Q ss_pred E--ccCCccccCCeEecC
Q 010392 360 V--CGIDDIQIGETIADK 375 (512)
Q Consensus 360 i--~~l~~~~~Gdtl~~~ 375 (512)
| .|++++..|+.+.-.
T Consensus 766 i~a~gl~~~~aG~~~~v~ 783 (1049)
T PRK14845 766 IAAPGLEEVLAGSPIRIV 783 (1049)
T ss_pred EecCCccccCCCCeEEEe
Confidence 7 488888889988643
No 77
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=1.1e-23 Score=198.73 Aligned_cols=166 Identities=27% Similarity=0.293 Sum_probs=132.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-------------------
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN------------------- 150 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~------------------- 150 (512)
+||+++||.|+|||||+++|.+. ..|..+.|.++|+|+......+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 48999999999999999999532 2466778889999998887777664
Q ss_pred --------C------eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHcCC-cEEEEEecc
Q 010392 151 --------D------TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEFGH-AVVVVVNKI 214 (512)
Q Consensus 151 --------~------~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~~~-p~ivviNK~ 214 (512)
+ ..++|||||||.+|...+..++..+|++++|+|+.++ ...++.+.+..+...++ |+++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 3 6899999999999999999999999999999999974 66778888888777776 689999999
Q ss_pred CCCCC-CchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 215 DRPSA-RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 215 Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
|+... ......+++.+.+.... ...++++++||++|. |+++|++.|.+.+|.|.
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~vSA~~g~----------gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTI----AENAPIIPISAQLKY----------NIDVLLEYIVKKIPTPP 202 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccc----cCCCcEEEEeCCCCC----------CHHHHHHHHHHhCCCCC
Confidence 99752 22333344444443221 124579999999999 99999999999998874
No 78
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.89 E-value=3e-22 Score=191.02 Aligned_cols=178 Identities=21% Similarity=0.199 Sum_probs=136.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeee------------------------eE
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKN------------------------TS 146 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~------------------------~~ 146 (512)
+|+++|+.++|||||+++|....+... .......+|.+..|.++|+|+.... ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~--~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNG--RGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCC--CCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 489999999999999999997655332 2223556788999999999874333 12
Q ss_pred EEECCeeEEEEeCCCCCCChHHHHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC-Cchh
Q 010392 147 ITYNDTKINIIDTPGHSDFGGEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-RPDY 223 (512)
Q Consensus 147 ~~~~~~~i~liDtPG~~~~~~~~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~-~~~~ 223 (512)
+...+..++|+|||||.+|...+..++. .+|++++|+|+.++...++++++..+...++|+++|+||+|+... ....
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHH
Confidence 3344678999999999999998888875 789999999999999999999999999999999999999998643 2445
Q ss_pred hHhhhHHHHHHhcCC-------------------ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 224 VINSTFELFIELNAT-------------------DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 224 ~~~~~~~~~~~~~~~-------------------~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
..+++.+.+...+.. .....+|+|++||.+|. |++.|... +..+|++
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~----------Gi~~L~~~-L~~lp~~ 224 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE----------GLDLLHAF-LNLLPLR 224 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc----------CHHHHHHH-HHhcCCC
Confidence 555565555422211 11224699999999999 88777755 4567654
No 79
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.88 E-value=2.5e-22 Score=194.01 Aligned_cols=273 Identities=18% Similarity=0.230 Sum_probs=200.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeee-----------------EEEEC-
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNT-----------------SITYN- 150 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~-----------------~~~~~- 150 (512)
..+|+++|.+++|||||+..|........+.......+-..++.|..|..++..... +++|-
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 357999999999999999999876554333222222232333333333222221111 12221
Q ss_pred -----CeeEEEEeCCCCCCChHHHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-ch
Q 010392 151 -----DTKINIIDTPGHSDFGGEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PD 222 (512)
Q Consensus 151 -----~~~i~liDtPG~~~~~~~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~ 222 (512)
..-++|||..||+.|.+.+.-.+ .+-|..+++|.++.|+...+++++..+....+|+++|++|+|.+.++ .+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLq 292 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQ 292 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHH
Confidence 12589999999999877665444 44699999999999999999999999999999999999999998765 23
Q ss_pred hhHhhhHHHHHHhcCCcc-------------------ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC-
Q 010392 223 YVINSTFELFIELNATDE-------------------QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR- 282 (512)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~-------------------~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~- 282 (512)
+.++-+..++++-++..- ...+|+|.+|..+|. + .+||..+++.++...
T Consensus 293 EtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~----------N-L~LLkmFLNlls~R~~ 361 (641)
T KOG0463|consen 293 ETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT----------N-LPLLKMFLNLLSLRRQ 361 (641)
T ss_pred HHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCC----------C-hHHHHHHHhhcCcccc
Confidence 333334444433222111 123689999999998 4 478888888876653
Q ss_pred CcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCC-CceeeeeeeeeEeeecCceeecceecCCCEEEE-
Q 010392 283 IEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE-DSCRYARISELFVYEKFSRVSAEIVAAGDICAV- 360 (512)
Q Consensus 283 ~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~-~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i- 360 (512)
...+.|..++|++++..|++|+|+.|...+|+|+.+|.+.+.|.. ..+....|++| .+++.+|..+.+|+...+
T Consensus 362 ~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSI----HRKRMpV~~VrcGQtASFA 437 (641)
T KOG0463|consen 362 LNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSI----HRKRMPVGIVRCGQTASFA 437 (641)
T ss_pred cccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhh----hhccccceEEeccchhhhH
Confidence 355678899999999999999999999999999999999997764 55656688898 688999999999998766
Q ss_pred -ccCC--ccccCCeEecCC
Q 010392 361 -CGID--DIQIGETIADKV 376 (512)
Q Consensus 361 -~~l~--~~~~Gdtl~~~~ 376 (512)
.+++ +++.|.++.++.
T Consensus 438 LKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 438 LKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred hhhcchhhhhcceEEecCC
Confidence 4554 799999999875
No 80
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=2.8e-21 Score=175.14 Aligned_cols=159 Identities=31% Similarity=0.342 Sum_probs=120.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-CeeEEEEeCCCCCCChHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~i~liDtPG~~~~~~~~ 169 (512)
+|+++|++|+|||||+++|++... +..+.+..+++|+......+.+. +..+++|||||+.+|...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~-------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIET-------------DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCccc-------------ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHH
Confidence 689999999999999999985421 11123344577777777677776 7899999999999998888
Q ss_pred HHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCC-cEEEEEeccCCCCCC-chhhHhhhHHHHHHhcCCcccccccee
Q 010392 170 ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR-PDYVINSTFELFIELNATDEQCDFQAI 247 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pvi 247 (512)
..++..+|++++|+|+.++...++.+.+..+...+. |+++|+||+|+.... .....+++.+.+..... ..++++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFL----ADAPIF 144 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCc----CCCcEE
Confidence 888999999999999998877778777776666676 999999999987532 12233444444432211 245799
Q ss_pred eeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 248 YASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 248 ~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
++||++|. |++++++.+..
T Consensus 145 ~~Sa~~~~----------~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGE----------GIEELKEYLDE 163 (164)
T ss_pred EEeCCCCc----------CHHHHHHHHhh
Confidence 99999999 99999888753
No 81
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.2e-22 Score=188.58 Aligned_cols=327 Identities=20% Similarity=0.253 Sum_probs=225.5
Q ss_pred hHHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE---CC-
Q 010392 76 AAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY---ND- 151 (512)
Q Consensus 76 ~~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---~~- 151 (512)
.........+++-..||+.+||+.+||||++.++.+-.- + ..+.|-+|.+||...+..... .+
T Consensus 25 l~pls~evisRQATiNIGTIGHVAHGKSTvVkAiSGv~T-------v------rFK~ELERNITIKLGYANAKIYkc~~~ 91 (466)
T KOG0466|consen 25 LHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVHT-------V------RFKNELERNITIKLGYANAKIYKCDDP 91 (466)
T ss_pred cCCCCHHHhhheeeeeecceeccccCcceeeeeeccceE-------E------EehhhhhcceeEEeccccceEEecCCC
Confidence 333444455677789999999999999999999865311 1 234566778888776554322 10
Q ss_pred ---------------------------------eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-CchhHHHHH
Q 010392 152 ---------------------------------TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVL 197 (512)
Q Consensus 152 ---------------------------------~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l 197 (512)
..+.|+|+|||.-....+.......|+++++|.+++. .++||-+++
T Consensus 92 kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL 171 (466)
T KOG0466|consen 92 KCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL 171 (466)
T ss_pred CCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH
Confidence 1578999999998888888888899999999998875 688999999
Q ss_pred HHHHHcCC-cEEEEEeccCCCCCC-chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHH
Q 010392 198 KKALEFGH-AVVVVVNKIDRPSAR-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 198 ~~~~~~~~-p~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
..+.-+++ .++++-||+|+...+ ..+-.+++..+++.... ...|++++||.-.. +++-+.+.|+
T Consensus 172 aaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~kFi~~t~a----e~aPiiPisAQlky----------NId~v~eyiv 237 (466)
T KOG0466|consen 172 AAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQKFIQGTVA----EGAPIIPISAQLKY----------NIDVVCEYIV 237 (466)
T ss_pred HHHHHhhhceEEEEechhhhhhHHHHHHHHHHHHHHHhcccc----CCCceeeehhhhcc----------ChHHHHHHHH
Confidence 98888875 588899999998543 12233444444433222 25689999999988 8899999999
Q ss_pred HhCCCCCCcccccceeeeEEEeee--------CCCcEEEEEEEeecccCCCCEEEEccCC------Cce----eeeeeee
Q 010392 276 RCIPGPRIEKDGALQMLATNLEYD--------EHKGRIAIGRLHAGVLRKGMEVRVCTSE------DSC----RYARISE 337 (512)
Q Consensus 276 ~~lp~p~~~~~~p~~~~V~~~~~~--------~~~G~v~~grV~sG~l~~g~~v~~~~~~------~~~----~~~kV~~ 337 (512)
+.+|.|.++...|.++.|.+.|.. ...|-|+.|.+..|.|+.||.+.+.|.= ... .+.+|.+
T Consensus 238 kkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~s 317 (466)
T KOG0466|consen 238 KKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVS 317 (466)
T ss_pred hcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHH
Confidence 999999999999999998887653 4567899999999999999999997752 111 0124555
Q ss_pred eEeeecCceeecceecCCCEEEE-ccCC------ccccCCeEecCCCCCCCCCCCCCCCeEEEEEEecCCCCCCcCCccc
Q 010392 338 LFVYEKFSRVSAEIVAAGDICAV-CGID------DIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYV 410 (512)
Q Consensus 338 i~~~~g~~~~~v~~a~aGdiv~i-~~l~------~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~ 410 (512)
+| .++.+++.|.+|..+++ +++| |--.|.+|...+. + |-+...++++-.-+..--+.+.
T Consensus 318 L~----AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~---L-------P~if~elei~y~Llrrllgvrt 383 (466)
T KOG0466|consen 318 LF----AEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGT---L-------PDIFTELEISYFLLRRLLGVRT 383 (466)
T ss_pred HH----hhhccceeecCCceeeeccccCcchhhhhHHHHHHHhhccC---C-------ccceeEEEeehhhhhHHhcccc
Confidence 54 45668899999999998 5554 2223555555443 2 2223333333222212222233
Q ss_pred chHHHHHHHHHHHhcCcceEEEECCCCCeEEEE
Q 010392 411 TSRNLRDRLYRELERNLAMRVADGETADTFIVS 443 (512)
Q Consensus 411 ~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~ 443 (512)
.+++...+..+|.++...+.---+-.|+..+..
T Consensus 384 ~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~ 416 (466)
T KOG0466|consen 384 KGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSA 416 (466)
T ss_pred ccccccchhhhcccCcEEEEEecccccCceEEE
Confidence 345555667787777766543333456554443
No 82
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=2e-20 Score=170.41 Aligned_cols=160 Identities=33% Similarity=0.425 Sum_probs=120.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC---CeeEEEEeCCCCCCChH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGHSDFGG 167 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~~~i~liDtPG~~~~~~ 167 (512)
.|+++|++|+|||||+++|+........ ..++|.......+.+. +..+++|||||+.+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGE----------------AGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccccc----------------CCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 5899999999999999999876543221 1244544444455553 67899999999999988
Q ss_pred HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccccee
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAI 247 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi 247 (512)
.+..++..+|++++|+|++++...++.+.+..+...++|+++|+||+|+...+.+.....+..... .........++++
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 144 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGL-QGEDEWGGDVQIV 144 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhc-cccccccCcCcEE
Confidence 888899999999999999988888888888888888999999999999875443333333322211 1100112246899
Q ss_pred eeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 248 YASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 248 ~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
++||++|. |+.+|+++|.+.
T Consensus 145 ~~Sa~~~~----------gi~~l~~~l~~~ 164 (168)
T cd01887 145 PTSAKTGE----------GIDDLLEAILLL 164 (168)
T ss_pred EeecccCC----------CHHHHHHHHHHh
Confidence 99999999 999999998865
No 83
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.4e-20 Score=164.90 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=136.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.+..+|+++|..++||||||++++++.+...+..++ |+.+.+....+.....++++|||+|+++|.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI--------------GiDFlskt~~l~d~~vrLQlWDTAGQERFr 85 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI--------------GIDFLSKTMYLEDRTVRLQLWDTAGQERFR 85 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccccccee--------------eeEEEEEEEEEcCcEEEEEEEecccHHHHh
Confidence 345789999999999999999999999998888877 888888777777777899999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHcC----CcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFG----HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~~----~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
.....|++.++++|+|+|.++ ..+.++..|++.++..+ +-+++|+||.||.+.+ +...++-...-++++.
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr-qvs~eEg~~kAkel~a---- 160 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR-QVSIEEGERKAKELNA---- 160 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh-hhhHHHHHHHHHHhCc----
Confidence 999999999999999999665 78899999999888764 4478899999998754 2233333333334433
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI 283 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~ 283 (512)
-++.+||+.|. ++.+|+..|...+|.+..
T Consensus 161 ---~f~etsak~g~----------NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 161 ---EFIETSAKAGE----------NVKQLFRRIAAALPGMEV 189 (221)
T ss_pred ---EEEEecccCCC----------CHHHHHHHHHHhccCccc
Confidence 48999999999 889999999999988753
No 84
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.84 E-value=3.9e-20 Score=168.56 Aligned_cols=161 Identities=17% Similarity=0.266 Sum_probs=111.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
||+++|+.|+|||||+++|+........... .+...|+......+.+++..+.+|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPP------------SKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcc------------cccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 5899999999999999999875332100000 0112344444556777889999999999999999999
Q ss_pred HHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 171 RILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
.++..+|++++|+|+.+.. ......++..+.. .++|+++++||+|+.... ..+++.+.+...........++
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL---SVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC---CHHHHHHHhccccccccCCceE
Confidence 9999999999999987642 2233344444332 478999999999986532 1233344333222112223568
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
++++||++|. |+++++++|.+
T Consensus 146 ~~~~Sa~~g~----------gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGT----------GVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCc----------CHHHHHHHHhc
Confidence 9999999999 99999998864
No 85
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.4e-20 Score=165.68 Aligned_cols=161 Identities=16% Similarity=0.202 Sum_probs=126.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.++..+|+|+|+.|+|||+|+.++....+...+..++ |+.+......+..+..+++||||+|+++|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTI--------------GVDf~~rt~e~~gk~iKlQIWDTAGQERF 71 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTI--------------GVDFKIRTVELDGKTIKLQIWDTAGQERF 71 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhccee--------------eeEEEEEEeeecceEEEEEeeeccccHHH
Confidence 4578999999999999999999999988877766665 77777777777777789999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+.++++.|+++|+|+|.++ ..+.....|+..+.++ ++|.++|+||+|+.+.+. +..+..+.|...
T Consensus 72 rtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~--v~~~~a~~fa~~------ 143 (205)
T KOG0084|consen 72 RTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRV--VSTEEAQEFADE------ 143 (205)
T ss_pred hhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhee--cCHHHHHHHHHh------
Confidence 9999999999999999999876 4556677788888876 579999999999976542 111222223211
Q ss_pred cccc-eeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQ-AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~p-vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+.| ++++||+.+. ++++.|..|...+
T Consensus 144 ~~~~~f~ETSAK~~~----------NVe~~F~~la~~l 171 (205)
T KOG0084|consen 144 LGIPIFLETSAKDST----------NVEDAFLTLAKEL 171 (205)
T ss_pred cCCcceeecccCCcc----------CHHHHHHHHHHHH
Confidence 2345 8999999998 6777766665543
No 86
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=5.8e-20 Score=185.06 Aligned_cols=153 Identities=24% Similarity=0.324 Sum_probs=129.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh---
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG--- 166 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~--- 166 (512)
+.|+|+|.+|+|||||.|+|++....+....+ |+|.+..+...+|.+..+.+|||+|..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p---------------GvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP---------------GVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC---------------CCccCCccceeEEcCceEEEEECCCCCcCCchH
Confidence 56999999999999999999998766554433 899999999999999999999999987533
Q ss_pred ------HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 167 ------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 167 ------~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
..+..++..||++|||+|+..|+...+.++.+.++..++|+++|+||+|-... ++....|-+++..+
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~------e~~~~efyslG~g~- 141 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA------EELAYEFYSLGFGE- 141 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh------hhhHHHHHhcCCCC-
Confidence 34566788999999999999999999999999999888999999999996522 22223344566643
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++++||.+|. |+.+|+|+++..+|
T Consensus 142 -----~~~ISA~Hg~----------Gi~dLld~v~~~l~ 165 (444)
T COG1160 142 -----PVPISAEHGR----------GIGDLLDAVLELLP 165 (444)
T ss_pred -----ceEeehhhcc----------CHHHHHHHHHhhcC
Confidence 7999999999 99999999999997
No 87
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=1.9e-19 Score=163.84 Aligned_cols=157 Identities=15% Similarity=0.222 Sum_probs=111.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
..+||+++|++|+|||||+++|+..........+. +. ......+.+++ ..++||||||+.+|
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~--------------~~--~~~~~~~~~~~~~~~l~i~D~~G~~~~ 65 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTI--------------GV--DFTMKTLEIEGKRVKLQIWDTAGQERF 65 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCcc--------------ce--EEEEEEEEECCEEEEEEEEECCChHHH
Confidence 45899999999999999999998765443322221 22 22333445555 57899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+..+++.+|++++|+|+.+... .....|+..+... ++|+++|+||+|+...+ ....++..+.......
T Consensus 66 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~---- 140 (165)
T cd01864 66 RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR-EVLFEEACTLAEKNGM---- 140 (165)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCC----
Confidence 9888999999999999999987532 3344566655543 57999999999987543 1222333333332221
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.+++++||++|. |++++++.+.+.
T Consensus 141 --~~~~e~Sa~~~~----------~v~~~~~~l~~~ 164 (165)
T cd01864 141 --LAVLETSAKESQ----------NVEEAFLLMATE 164 (165)
T ss_pred --cEEEEEECCCCC----------CHHHHHHHHHHh
Confidence 348999999999 999999998865
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.82 E-value=2e-19 Score=163.26 Aligned_cols=155 Identities=19% Similarity=0.277 Sum_probs=111.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|++|+|||||+++|+...+......+. +.++......+......+++|||||++.|...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTY--------------ALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCce--------------eeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 379999999999999999999876543332222 223322223333345678999999999999999
Q ss_pred HHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
..+++.+|++|+|+|+++... .....|+..+++. ++|+++|+||+|+... ...+....... ..+++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~-------~~~~~ 135 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS----VTQKKFNFAEK-------HNLPL 135 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh----HHHHHHHHHHH-------cCCeE
Confidence 999999999999999887543 3345666666655 6899999999998432 11222222111 13578
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+++||++|. |+.++++.+.+.+.
T Consensus 136 ~~~Sa~~~~----------gv~~l~~~l~~~~~ 158 (161)
T cd04124 136 YYVSAADGT----------NVVKLFQDAIKLAV 158 (161)
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 999999999 99999999887653
No 89
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.1e-19 Score=172.71 Aligned_cols=272 Identities=18% Similarity=0.227 Sum_probs=203.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC------------------
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN------------------ 150 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~------------------ 150 (512)
-.+|+++|..++|||||+..|.............-+.+ .++.|...|-|.......+.++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~F--Rh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIF--RHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehh--cchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 35799999999999999999987655433222111112 2344444444433332222221
Q ss_pred ---CeeEEEEeCCCCCCChHHHHHHHHh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC-Cchhh
Q 010392 151 ---DTKINIIDTPGHSDFGGEVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-RPDYV 224 (512)
Q Consensus 151 ---~~~i~liDtPG~~~~~~~~~~~~~~--~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~-~~~~~ 224 (512)
..-++|||.+||..|...+...+.. -|.+++|++|..|+...+++++..+...++|++++++|+|+.+. ..+..
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~t 324 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKT 324 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHH
Confidence 1258999999999998887777654 48899999999999999999999999999999999999999854 34667
Q ss_pred HhhhHHHHHHhcCCccc-------------------cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcc
Q 010392 225 INSTFELFIELNATDEQ-------------------CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEK 285 (512)
Q Consensus 225 ~~~~~~~~~~~~~~~~~-------------------~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~ 285 (512)
+.++..++...++..-. .-+|+|.+|..+|+ |+ .|+..++..+++.....
T Consensus 325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGe----------gl-~ll~~fLn~Lsp~~~~~ 393 (591)
T KOG1143|consen 325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGE----------GL-RLLRTFLNCLSPAGTAE 393 (591)
T ss_pred HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCcc----------ch-hHHHHHHhhcCCcCChH
Confidence 77777777655543211 13799999999998 65 56677777776653322
Q ss_pred ------cccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCC-CceeeeeeeeeEeeecCceeecceecCCCEE
Q 010392 286 ------DGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE-DSCRYARISELFVYEKFSRVSAEIVAAGDIC 358 (512)
Q Consensus 286 ------~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~-~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv 358 (512)
..|..+.|..++..|.+|.|+-|.+-+|.+..|+.+.+.|.. ..+...+|.+| .+++.++..+.||+-.
T Consensus 394 e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI----~Rnr~acrvvraGqaA 469 (591)
T KOG1143|consen 394 ERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSI----RRNRQACRVVRAGQAA 469 (591)
T ss_pred HHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeee----eccccceeeecCccce
Confidence 246778899999999999999999999999999999998876 34444588888 6788899999999988
Q ss_pred EEcc--CC--ccccCCeEecCCC
Q 010392 359 AVCG--ID--DIQIGETIADKVS 377 (512)
Q Consensus 359 ~i~~--l~--~~~~Gdtl~~~~~ 377 (512)
.++- .| .+++|.++...+.
T Consensus 470 slsl~d~D~~~LR~GMVl~~~~~ 492 (591)
T KOG1143|consen 470 SLSLNDPDGVSLRRGMVLAEIDH 492 (591)
T ss_pred eeeccCCCccchhcceEEeecCC
Confidence 8842 22 4788999987653
No 90
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.8e-19 Score=162.31 Aligned_cols=163 Identities=21% Similarity=0.181 Sum_probs=129.2
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
+.....+|+++|.+|+|||+|+.++..+.+......++ |+.+......+.....++++|||.|++.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi--------------GIDFk~kti~l~g~~i~lQiWDtaGQer 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI--------------GIDFKIKTIELDGKKIKLQIWDTAGQER 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE--------------EEEEEEEEEEeCCeEEEEEEEEcccchh
Confidence 45678999999999999999999999999987777776 7777666666666667889999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|...+..|++.|+++++|+|..+ ..+...+.|++.+.++ ++|.++|+||+|+...+ ....++-..+..++
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R-~V~~e~ge~lA~e~----- 147 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR-QVSKERGEALAREY----- 147 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccc-cccHHHHHHHHHHh-----
Confidence 99999999999999999999665 4566777788888776 57999999999997643 22223333333333
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+++++++||++|. ++.+.+-.+.+.+-
T Consensus 148 --G~~F~EtSAk~~~----------NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 148 --GIKFFETSAKTNF----------NIEEAFLSLARDIL 174 (207)
T ss_pred --CCeEEEccccCCC----------CHHHHHHHHHHHHH
Confidence 4579999999999 67776666665543
No 91
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.82 E-value=1.4e-19 Score=161.11 Aligned_cols=147 Identities=23% Similarity=0.347 Sum_probs=106.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh---
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG--- 166 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~--- 166 (512)
.+|+++|.+|+|||||+|+|++........ .|+|+......+.+.+..+.|+|+||..++.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~----------------pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNW----------------PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEES----------------TTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCC----------------CCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 369999999999999999999875332211 2889999999999999999999999965433
Q ss_pred ---HHHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchh-hHhhhHHHHHHhcCCcc
Q 010392 167 ---GEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDY-VINSTFELFIELNATDE 240 (512)
Q Consensus 167 ---~~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~ 240 (512)
.....++ ...|++++|+|++. ......+..++.+.++|+++++||+|+....-.. ..+.+.+.+
T Consensus 65 ~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-------- 134 (156)
T PF02421_consen 65 EEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL-------- 134 (156)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------
Confidence 1123333 46899999999987 4566677888899999999999999976432111 122333322
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHH
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESI 274 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i 274 (512)
.+|++++||+++. |+++|+++|
T Consensus 135 --g~pvi~~sa~~~~----------g~~~L~~~I 156 (156)
T PF02421_consen 135 --GVPVIPVSARTGE----------GIDELKDAI 156 (156)
T ss_dssp --TS-EEEEBTTTTB----------THHHHHHHH
T ss_pred --CCCEEEEEeCCCc----------CHHHHHhhC
Confidence 4689999999999 999998875
No 92
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.81 E-value=2.9e-19 Score=162.81 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=111.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|..|+|||||+++|++..+.....++. |++..............+.+|||||+.++...+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV--------------GIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------------eeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 579999999999999999999876654433332 322222222222223578999999999999999
Q ss_pred HHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 170 ERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
..+++.+|++++|+|.++. .......|+..+... +.|+++|+||+|+...+.. ..++..+....+ .++
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~-------~~~ 139 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVV-SSERGRQLADQL-------GFE 139 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccccc-CHHHHHHHHHHc-------CCE
Confidence 9999999999999998763 233445666666553 4789999999999654321 122222322222 346
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++++||++|. |+.++++.+.+.++
T Consensus 140 ~~~~Sa~~~~----------gv~~l~~~l~~~~~ 163 (165)
T cd01865 140 FFEASAKENI----------NVKQVFERLVDIIC 163 (165)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 8999999999 99999999987653
No 93
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.7e-19 Score=160.56 Aligned_cols=164 Identities=17% Similarity=0.227 Sum_probs=127.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|..++|||||+-++..+.+.....+++ |..+......+.-...++.||||.|+++|..
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TI--------------GaaF~tktv~~~~~~ikfeIWDTAGQERy~s 69 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTI--------------GAAFLTKTVTVDDNTIKFEIWDTAGQERYHS 69 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcccccccccc--------------ccEEEEEEEEeCCcEEEEEEEEcCCcccccc
Confidence 45789999999999999999999888765544544 4444444444444457889999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHcCCc---EEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 168 EVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFGHA---VVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~~~p---~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
....|++.|+++|+|+|.++ ..+...+.|++.+....-| +.+|+||+|+...+ +...++..+...+. .
T Consensus 70 lapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R-~V~~~ea~~yAe~~-------g 141 (200)
T KOG0092|consen 70 LAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR-EVEFEEAQAYAESQ-------G 141 (200)
T ss_pred cccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc-cccHHHHHHHHHhc-------C
Confidence 99999999999999999877 5667778888888876444 66799999998643 22334444443332 3
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI 283 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~ 283 (512)
.+++++||++|. ++.+++..|.+.+|....
T Consensus 142 ll~~ETSAKTg~----------Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 142 LLFFETSAKTGE----------NVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred CEEEEEeccccc----------CHHHHHHHHHHhccCccc
Confidence 469999999999 899999999999988753
No 94
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.81 E-value=4.1e-19 Score=162.09 Aligned_cols=157 Identities=19% Similarity=0.184 Sum_probs=112.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|.+|+|||||+++++...+.....++. +.+.... .+.+.+ ..+.+|||||+.++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~--------------~~~~~~~--~~~~~~~~~~l~l~D~~g~~~~ 65 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI--------------GIDFKIR--TIELDGKKIKLQIWDTAGQERF 65 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc--------------cceEEEE--EEEECCEEEEEEEEeCCchHHH
Confidence 45789999999999999999999876654433332 2222222 233333 57899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+..+++.+|++++|+|+++... .....|+..+... +.|+++|+||+|+.+.+ ....++..+.....
T Consensus 66 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~------ 138 (167)
T cd01867 66 RTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR-VVSKEEGEALADEY------ 138 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc-CCCHHHHHHHHHHc------
Confidence 9888889999999999999876432 2334555555543 57999999999997532 11223333333221
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++++.+.+
T Consensus 139 -~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 164 (167)
T cd01867 139 -GIKFLETSAKANI----------NVEEAFFTLAKDI 164 (167)
T ss_pred -CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3478999999998 9999999988754
No 95
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=4.5e-19 Score=159.29 Aligned_cols=149 Identities=23% Similarity=0.327 Sum_probs=111.5
Q ss_pred EEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH-----
Q 010392 93 AIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG----- 167 (512)
Q Consensus 93 ~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~----- 167 (512)
+++|++|+|||||+++|++....... ...++|.........+.+..+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE---------------DTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec---------------CCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 58999999999999999875321111 1124455555666777888999999999988654
Q ss_pred ---HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 168 ---EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 168 ---~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
.+...+..+|++++|+|+.++.......++..+...+.|+++|+||+|+...+.. ...+..++. .
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~------~~~~~~~~~------~ 133 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE------AAEFYSLGF------G 133 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH------HHHHHhcCC------C
Confidence 4456788899999999998877777777778888889999999999998764311 122222221 1
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+++++||++|. |++++++.+.+.+
T Consensus 134 ~~~~~Sa~~~~----------gv~~l~~~l~~~~ 157 (157)
T cd01894 134 EPIPISAEHGR----------GIGDLLDAILELL 157 (157)
T ss_pred CeEEEecccCC----------CHHHHHHHHHhhC
Confidence 57999999999 9999999988753
No 96
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.81 E-value=7.8e-19 Score=159.27 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=108.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|.+|+|||||++++++..+.....++. +... .....+......+++|||||+.+|...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI--------------EDSY-TKQCEIDGQWAILDILDTAGQEEFSAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc--------------cceE-EEEEEECCEEEEEEEEECCCCcchhHH
Confidence 3589999999999999999999876543333322 1011 111122222357889999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
+..+++.+|++++|+|+++... .....|+..+.. .++|+++|+||+|+..... ...++..+..... .
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~-~~~~~~~~~~~~~-------~ 138 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK-VSREEGQELARKL-------K 138 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce-ecHHHHHHHHHHc-------C
Confidence 9999999999999999887432 223344444433 3689999999999865321 1122233332221 3
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++++++||++|. |+.++++.+.+.+
T Consensus 139 ~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 163 (164)
T cd04145 139 IPYIETSAKDRL----------NVDKAFHDLVRVI 163 (164)
T ss_pred CcEEEeeCCCCC----------CHHHHHHHHHHhh
Confidence 478999999999 9999999998754
No 97
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.81 E-value=4.8e-19 Score=164.82 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=114.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
+...+|+++|..|+|||||+.+|....+......+. +... ....+..++ ..++||||+|+.+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~--------------~~~~--~~~~i~~~~~~~~l~iwDt~G~~~ 67 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNM--------------GIDY--KTTTILLDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--------------eeEE--EEEEEEECCEEEEEEEEeCCCcHH
Confidence 456899999999999999999999765543322221 2222 222333333 6789999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
|...+..+++.+|++|+|+|.++. .......|+..+... +.|+++|+||+|+...+. ...++.++..+..
T Consensus 68 ~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~-v~~~~~~~~a~~~------ 140 (189)
T cd04121 68 FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQ-VATEQAQAYAERN------ 140 (189)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccC-CCHHHHHHHHHHc------
Confidence 999999999999999999998763 445556677777654 579999999999965331 1233444443322
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++|+.+.+.+
T Consensus 141 -~~~~~e~SAk~g~----------~V~~~F~~l~~~i 166 (189)
T cd04121 141 -GMTFFEVSPLCNF----------NITESFTELARIV 166 (189)
T ss_pred -CCEEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 3469999999999 8899888888654
No 98
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.81 E-value=7.1e-19 Score=173.28 Aligned_cols=157 Identities=24% Similarity=0.232 Sum_probs=109.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh----
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG---- 166 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~---- 166 (512)
+|+++|.+|+|||||+|+|++.........+ ++|...........+.++.||||||+.+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~---------------~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKA---------------QTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCC---------------CcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 5899999999999999999987543322211 223322222334456689999999986531
Q ss_pred ----HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 167 ----GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 167 ----~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
..+..++..+|++++|+|++...... ..++..+...+.|+++|+||+|+... ....+.+.+.......
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~----- 138 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFK--DKLLPLIDKYAILEDF----- 138 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCH--HHHHHHHHHHHhhcCC-----
Confidence 22456678899999999998865443 55667777788999999999998632 2233222222211111
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.+++++||++|. |+++|++.+.+.+|..
T Consensus 139 -~~v~~iSA~~g~----------gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 139 -KDIVPISALTGD----------NTSFLAAFIEVHLPEG 166 (270)
T ss_pred -CceEEEecCCCC----------CHHHHHHHHHHhCCCC
Confidence 168999999999 9999999999998764
No 99
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=4.6e-19 Score=161.57 Aligned_cols=158 Identities=19% Similarity=0.241 Sum_probs=111.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|+.|+|||||+++|+...+.....++. |.++......+.....++.+|||||+..|...
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 67 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI--------------GVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV 67 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCccc--------------ceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 3689999999999999999999876654433332 22332222223333457899999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
+..+++.+|++|+|+|.++.. ......|+..+... +.|+++|+||+|+...+ ....++..+.... ..+
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~-~~~~~~~~~~~~~-------~~~ 139 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR-DVTYEEAKQFADE-------NGL 139 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-CcCHHHHHHHHHH-------cCC
Confidence 999999999999999988743 33444565555443 46899999999997543 1122333333322 135
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+++++||++|. |+.++++.+.+.+
T Consensus 140 ~~~e~Sa~~~~----------~i~e~f~~l~~~~ 163 (166)
T cd04122 140 LFLECSAKTGE----------NVEDAFLETAKKI 163 (166)
T ss_pred EEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 79999999999 8999988887543
No 100
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.81 E-value=4.1e-19 Score=163.13 Aligned_cols=156 Identities=20% Similarity=0.222 Sum_probs=109.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|++|+|||||+++|++.... ...+ |+......+.+++..+.+|||||+..+.
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~------------------t~g~~~~~~~~~~~~l~l~D~~G~~~~~ 72 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISP------------------TLGFQIKTLEYEGYKLNIWDVGGQKTLR 72 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCC------------------ccccceEEEEECCEEEEEEECCCCHHHH
Confidence 34578999999999999999999875321 1111 1112223445567889999999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHH----HcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~----~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..++..+|++++|+|+.+. .......++..+. ..+.|+++|+||+|+.... ..+++.+.+.... ...
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~--~~~ 147 (173)
T cd04154 73 PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL---SEEEIREALELDK--ISS 147 (173)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC---CHHHHHHHhCccc--cCC
Confidence 8889999999999999998875 2233334444332 2468999999999987543 2233333332111 112
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
..++++++||++|. |++++++++.+
T Consensus 148 ~~~~~~~~Sa~~g~----------gi~~l~~~l~~ 172 (173)
T cd04154 148 HHWRIQPCSAVTGE----------GLLQGIDWLVD 172 (173)
T ss_pred CceEEEeccCCCCc----------CHHHHHHHHhc
Confidence 35689999999999 99999998764
No 101
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=6.6e-19 Score=178.47 Aligned_cols=160 Identities=24% Similarity=0.248 Sum_probs=117.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh-
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~- 166 (512)
+..+|+++|++|+|||||+|+|++.......+. .+.|.......+.+++.+++||||||+.+..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k---------------~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~ 115 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPK---------------VQTTRSIITGIITLKDTQVILYDTPGIFEPKG 115 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCC---------------CCCccCcEEEEEEeCCeEEEEEECCCcCCCcc
Confidence 457899999999999999999997655322111 1344444445567788899999999985421
Q ss_pred -------HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 167 -------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 167 -------~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
.....++..+|++|+|+|+.++.......++..+...+.|.++|+||+|+.... ..++.+.+.....
T Consensus 116 ~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~----~~~~~~~l~~~~~-- 189 (339)
T PRK15494 116 SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY----LNDIKAFLTENHP-- 189 (339)
T ss_pred cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc----HHHHHHHHHhcCC--
Confidence 122245778999999999988777776777788888888989999999986432 3334444332211
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
..+++++||++|. |+++|++.|.+.+|..
T Consensus 190 ---~~~i~~iSAktg~----------gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 190 ---DSLLFPISALSGK----------NIDGLLEYITSKAKIS 218 (339)
T ss_pred ---CcEEEEEeccCcc----------CHHHHHHHHHHhCCCC
Confidence 2358999999999 9999999999988764
No 102
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.81 E-value=5.9e-19 Score=159.99 Aligned_cols=158 Identities=19% Similarity=0.254 Sum_probs=113.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|++|+|||||+++|++.........+. |.+.......+...+..+.+|||||+.++...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTI--------------GAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--------------ceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 479999999999999999999876654222222 333333333444445678999999999998888
Q ss_pred HHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 170 ERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
..+++.+|++++|+|+.+. .......++..+... ++|+++++||+|+.... ....++........ .++
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~-------~~~ 139 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR-QVSTEEAQEYADEN-------GLL 139 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC-cCCHHHHHHHHHHc-------CCE
Confidence 8889999999999998764 334455666666555 47899999999987432 11222333333222 246
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++++||++|. |+.++++.+.+.+|
T Consensus 140 ~~~~Sa~~~~----------~v~~l~~~l~~~l~ 163 (163)
T cd01860 140 FFETSAKTGE----------NVNELFTEIAKKLP 163 (163)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHhC
Confidence 8999999999 99999999998764
No 103
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=5.1e-19 Score=178.14 Aligned_cols=191 Identities=15% Similarity=0.188 Sum_probs=135.8
Q ss_pred cccccCCCCcccccccccccchHHHHhhhhccCCCCccchhHHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 36 FGYNLSSSPITTTSLKFRHCNTATQRHRRIQCSVSPPAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 36 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
.+|..+.++++++|..+......++....++ .+-+..|+|+|.+|||||||+++|+.....
T Consensus 124 ~gn~~f~~~~~~~p~~~~~g~~g~~~~~~le-------------------lk~~adVglVG~PNaGKSTLln~ls~a~~~ 184 (335)
T PRK12299 124 LGNAHFKSSTNRAPRYATPGEPGEERWLRLE-------------------LKLLADVGLVGLPNAGKSTLISAVSAAKPK 184 (335)
T ss_pred CCchhhccccCCCCccccCCCCCcEEEEEEE-------------------EcccCCEEEEcCCCCCHHHHHHHHHcCCCc
Confidence 6788888889998877666666555554444 345678999999999999999999875433
Q ss_pred CcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCCC
Q 010392 116 FRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 116 ~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~~ 187 (512)
+...+ ++|+......+.+ ++.++++|||||+.+ +...+.+++..+|++++|+|+++
T Consensus 185 va~yp----------------fTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~ 248 (335)
T PRK12299 185 IADYP----------------FTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEA 248 (335)
T ss_pred cCCCC----------------CceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCC
Confidence 22222 4577777777777 456899999999853 33456667788999999999886
Q ss_pred C-CchhHHHHHHHHHHc-----CCcEEEEEeccCCCCCCchhhHhh-hHHHHHHhcCCccccccceeeeccccCccCCCC
Q 010392 188 G-PMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINS-TFELFIELNATDEQCDFQAIYASGIQGKAGLSP 260 (512)
Q Consensus 188 g-~~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~ 260 (512)
. .......|...+..+ ++|+++|+||+|+.... ....+ ....+.. ..++++++||+++.
T Consensus 249 ~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~--~~~~~~~~~~~~~-------~~~~i~~iSAktg~----- 314 (335)
T PRK12299 249 VDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE--EEREKRAALELAA-------LGGPVFLISAVTGE----- 314 (335)
T ss_pred CCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch--hHHHHHHHHHHHh-------cCCCEEEEEcCCCC-----
Confidence 3 234444555555543 57999999999987542 11211 2211111 13579999999999
Q ss_pred CCcCCCchhhHHHHHHhCCC
Q 010392 261 DNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 261 ~~~~~gi~~Ll~~i~~~lp~ 280 (512)
|+++|++.|.+.++.
T Consensus 315 -----GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 -----GLDELLRALWELLEE 329 (335)
T ss_pred -----CHHHHHHHHHHHHHh
Confidence 999999999887653
No 104
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.81 E-value=5.9e-19 Score=165.86 Aligned_cols=155 Identities=18% Similarity=0.258 Sum_probs=109.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGGE 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~ 168 (512)
.|+++|..|+|||||+.++....+...+..++ |..+ ....+.+++ ..++||||+|++.|...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti--------------~~~~--~~~~i~~~~~~v~l~iwDtaGqe~~~~l 65 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGV--------------GVDF--KIKTVELRGKKIRLQIWDTAGQERFNSI 65 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcc--------------eeEE--EEEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 48999999999999999999877754444333 2222 223344444 67899999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 169 VERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
+..+++.+|++|+|+|.++. .......|+..+... ++|+++|+||+|+...+ +....+..++..++ ..+
T Consensus 66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~-~v~~~~~~~~a~~~------~~~ 138 (202)
T cd04120 66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR-EISRQQGEKFAQQI------TGM 138 (202)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-ccCHHHHHHHHHhc------CCC
Confidence 99999999999999998874 333444566555543 57999999999986432 11112222222111 134
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+++++||++|. |+.++|+++.+.+
T Consensus 139 ~~~etSAktg~----------gV~e~F~~l~~~~ 162 (202)
T cd04120 139 RFCEASAKDNF----------NVDEIFLKLVDDI 162 (202)
T ss_pred EEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 68999999999 8888888887654
No 105
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.81 E-value=6.4e-19 Score=160.18 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=109.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|++|+|||||+++|++..+...+.+++ +.+.......+......+++|||||+.+|...+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTI--------------GIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc--------------ceeEEEEEEEECCeEEEEEEEECCccHHHHHHHH
Confidence 79999999999999999999887654443333 2222222223333346889999999999998888
Q ss_pred HHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH--------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 171 RILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE--------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~--------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
.+++.+|++|+|+|.++... .....|+..+.. .+.|+++|+||+|+.... ....++......+.
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~------ 140 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR-AVSEDEGRLWAESK------ 140 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc-ccCHHHHHHHHHHc------
Confidence 89999999999999887432 333445554443 247899999999986321 11122222222221
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.|.+.+
T Consensus 141 -~~~~~~~Sa~~~~----------gi~~l~~~l~~~l 166 (168)
T cd04119 141 -GFKYFETSACTGE----------GVNEMFQTLFSSI 166 (168)
T ss_pred -CCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 2468999999999 9999999998764
No 106
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=7.5e-19 Score=165.54 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=111.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE-ECCeeEEEEeCCCCCCChHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-YNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~~~~i~liDtPG~~~~~~~ 168 (512)
.+|+++|.+|+|||||+++|+...+.....+++ |.........+. .....+.||||||++.|...
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~--------------~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~ 66 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI--------------GVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM 66 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--------------eEEEEEEEEEECCCCEEEEEEEECCCchhhhhh
Confidence 379999999999999999999876544433332 222222222222 33467899999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH-------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~-------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
+..+++.+|++|+|+|.++.. ......|+..+.. .++|+++|+||+|+...+ ....+++.+.....+.
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~--- 142 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL-AKDGEQMDQFCKENGF--- 142 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc-ccCHHHHHHHHHHcCC---
Confidence 999999999999999987642 2333344444432 357999999999996422 1223344444433321
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.+++++||++|. |+++++++|.+.+..
T Consensus 143 ---~~~~e~Sak~~~----------~v~e~f~~l~~~l~~ 169 (201)
T cd04107 143 ---IGWFETSAKEGI----------NIEEAMRFLVKNILA 169 (201)
T ss_pred ---ceEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 358999999999 899999998877633
No 107
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3e-19 Score=185.24 Aligned_cols=216 Identities=25% Similarity=0.269 Sum_probs=159.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE------------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY------------------ 149 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~------------------ 149 (512)
+.+-++|+||+++|||-|+..+-+........+ |+|.......+..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeag----------------gitqqIgAt~fp~~ni~e~tk~~~~~~K~~~ 537 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAG----------------GITQQIGATYFPAENIREKTKELKKDAKKRL 537 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccccc----------------ceeeeccccccchHHHHHHHHHHHhhhhhhc
Confidence 355689999999999999999976543332222 3333333222221
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC-CCC--c-----
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP-SAR--P----- 221 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~-~~~--~----- 221 (512)
+--.+.+||||||+.|.....+....||.+|+|+|..+|+.+||.+.++.++..+.|+||++||+|+. ++. +
T Consensus 538 kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 538 KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred CCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHH
Confidence 11257899999999999999999999999999999999999999999999999999999999999986 221 0
Q ss_pred -------hhhHhhhHHH-------HHHhcCCcc--------ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 222 -------DYVINSTFEL-------FIELNATDE--------QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 222 -------~~~~~~~~~~-------~~~~~~~~~--------~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
..++++.... |.+.+.+.. ..-+.++|+||.+|. |+..|+-.|+++..
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe----------GipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE----------GIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC----------CcHHHHHHHHHHHH
Confidence 1122222222 222222111 112568999999999 99999988887643
Q ss_pred CCC---CcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCc
Q 010392 280 GPR---IEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDS 329 (512)
Q Consensus 280 ~p~---~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~ 329 (512)
... ...-..+.+.|..+...++.|+-+-+-+..|.|+.||.|.+++.+..
T Consensus 688 k~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~Gp 740 (1064)
T KOG1144|consen 688 KTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGP 740 (1064)
T ss_pred HHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCc
Confidence 321 12234578889999999999998889999999999999999988754
No 108
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.80 E-value=4.3e-19 Score=160.60 Aligned_cols=153 Identities=19% Similarity=0.262 Sum_probs=105.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCC-cCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVF-RDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~-~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
+|+++|.+|+|||||+++|....... ...+++ |.+ ...+.+.+..+++|||||+.+|...+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~--------------g~~----~~~~~~~~~~~~l~Dt~G~~~~~~~~ 62 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTV--------------GFN----VESFEKGNLSFTAFDMSGQGKYRGLW 62 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCcc--------------ccc----eEEEEECCEEEEEEECCCCHhhHHHH
Confidence 58999999999999999998754211 111111 222 23345678899999999999999999
Q ss_pred HHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
..+++.+|++++|+|+++... .....++..+.. .++|+++|+||+|+..+.. ..++.+.+. +. .....
T Consensus 63 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---~~~~~~~l~-~~-~~~~~ 137 (162)
T cd04157 63 EHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---AVKITQLLG-LE-NIKDK 137 (162)
T ss_pred HHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC---HHHHHHHhC-Cc-cccCc
Confidence 999999999999999887532 223334443322 3689999999999875431 122222221 11 00112
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
.++++++||++|. |+++++++|.+
T Consensus 138 ~~~~~~~Sa~~g~----------gv~~~~~~l~~ 161 (162)
T cd04157 138 PWHIFASNALTGE----------GLDEGVQWLQA 161 (162)
T ss_pred eEEEEEeeCCCCC----------chHHHHHHHhc
Confidence 3568999999999 99999998864
No 109
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=7e-19 Score=168.26 Aligned_cols=163 Identities=26% Similarity=0.364 Sum_probs=123.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC---
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~--- 164 (512)
+.--|+++|.+|+|||||+|+|++....+..... .+|...-..-+..++.++.|+||||...
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~---------------QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCc---------------chhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 3456999999999999999999998776654432 3344444455566788999999999753
Q ss_pred -----ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 165 -----FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 165 -----~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
.......++..+|.++||+|+.++....+...++.++..+.|+++++||+|+.... ..+..+.+.+.......
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~ 147 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFK 147 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcc
Confidence 23445566788999999999999988888888999888778999999999987643 21233444333222211
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
.++++||++|. ++..|++.+..++|...
T Consensus 148 -----~ivpiSA~~g~----------n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 148 -----EIVPISALKGD----------NVDTLLEIIKEYLPEGP 175 (298)
T ss_pred -----eEEEeeccccC----------CHHHHHHHHHHhCCCCC
Confidence 48999999999 99999999999998753
No 110
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.80 E-value=8e-19 Score=159.87 Aligned_cols=158 Identities=17% Similarity=0.215 Sum_probs=110.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|.+|+|||||+++|+...+.....++. +.+.......+......+.+|||||+.+|...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 67 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI--------------GVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 67 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceeEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 4689999999999999999999776544333322 22222222222222357899999999999998
Q ss_pred HHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 169 VERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
+..+++.+|++++|+|+++. .......|+..+... +.|+++|+||+|+..... ...++....... ..+
T Consensus 68 ~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 139 (166)
T cd01869 68 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRV-VDYSEAQEFADE-------LGI 139 (166)
T ss_pred HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccC-CCHHHHHHHHHH-------cCC
Confidence 99999999999999998773 233444566555543 579999999999865431 112223332221 245
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+++++||++|. |+.++++.+.+.+
T Consensus 140 ~~~~~Sa~~~~----------~v~~~~~~i~~~~ 163 (166)
T cd01869 140 PFLETSAKNAT----------NVEQAFMTMAREI 163 (166)
T ss_pred eEEEEECCCCc----------CHHHHHHHHHHHH
Confidence 79999999999 9999999988754
No 111
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.80 E-value=9.9e-19 Score=158.42 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=107.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|.+|+|||||+++++...+.....++. +- .......+......+.||||||+++|...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~--------------~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--------------ED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCch--------------hh-hEEEEEEECCEEEEEEEEECCCccccchHH
Confidence 579999999999999999999876543333322 10 001111122223567899999999999999
Q ss_pred HHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 170 ERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
..+++.+|++++|+|.++. .......|+..+... ++|+++|+||+|+...+. ...++........ ..
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~~ 138 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERV-VSREEGQALARQW-------GC 138 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce-ecHHHHHHHHHHc-------CC
Confidence 9999999999999998763 233444555555432 589999999999865321 1112222222111 25
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
|++++||++|. |+.++++.+.+.+
T Consensus 139 ~~~~~Sa~~~~----------~v~~l~~~l~~~~ 162 (163)
T cd04136 139 PFYETSAKSKI----------NVDEVFADLVRQI 162 (163)
T ss_pred eEEEecCCCCC----------CHHHHHHHHHHhc
Confidence 79999999999 9999999998754
No 112
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.80 E-value=7.2e-19 Score=159.24 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=110.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.||+++|++|+|||||+++|+.........++. +.........+......+.+|||||+.+|...+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTI--------------GVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce--------------eeeEEEEEEEECCEEEEEEEEECcchHHHHHhH
Confidence 379999999999999999999876654433332 222222222333334578999999999999888
Q ss_pred HHHHHhccEEEEEEeCCCCCch-hHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 170 ERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~~-~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
..+++.+|++++|+|+++.... ....|+..++. .++|+++|+||+|+.... ....++........ .++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~-------~~~ 138 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR-EVTFLEASRFAQEN-------GLL 138 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc-cCCHHHHHHHHHHc-------CCE
Confidence 9999999999999999875332 33455555443 368999999999986532 11223333333332 246
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
++++||++|. |+.++++.+.+.
T Consensus 139 ~~~~Sa~~~~----------~i~~~~~~~~~~ 160 (161)
T cd04113 139 FLETSALTGE----------NVEEAFLKCARS 160 (161)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHh
Confidence 9999999999 999999998865
No 113
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.80 E-value=1.3e-18 Score=157.07 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=107.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~~~~ 167 (512)
.+|+++|.+|+|||||+++|++..+.....++. +... ...+..+ ...+.+|||||+++|..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--------------EDSY---RKQVVIDGETCLLDILDTAGQEEYSA 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcc--------------hheE---EEEEEECCEEEEEEEEECCCCcchHH
Confidence 479999999999999999999876544333332 1111 1122233 34578999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..+++.+|++++|+|..+.. ......++..+.. .++|+++|+||+|+.... ...++..+.....
T Consensus 65 l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~------- 135 (162)
T cd04138 65 MRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART--VSSRQGQDLAKSY------- 135 (162)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce--ecHHHHHHHHHHh-------
Confidence 9999999999999999987632 2233344444443 368999999999986521 1223333333222
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.+.+.+
T Consensus 136 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 161 (162)
T cd04138 136 GIPYIETSAKTRQ----------GVEEAFYTLVREI 161 (162)
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHHh
Confidence 3468999999999 9999999988654
No 114
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.80 E-value=1e-18 Score=159.76 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=113.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|.+|+|||||+++++..........+. |.+.......+......+++|||||+.+|..
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMITIDGKQIKLQIWDTAGQESFRS 68 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--------------ceeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 45789999999999999999999876554433332 3333333333333345789999999999988
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
....+++.+|++++|+|+++.. ......|+..++.. ++|+++|+||+|+.... ....++........ .
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~-------~ 140 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR-EVSYEEGEAFAKEH-------G 140 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-CCCHHHHHHHHHHc-------C
Confidence 8889999999999999988632 23344566656553 57999999999987432 11223333333322 3
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++++++||++|. |+.++++.+.+.+
T Consensus 141 ~~~~e~Sa~~~~----------~i~~~~~~~~~~~ 165 (168)
T cd01866 141 LIFMETSAKTAS----------NVEEAFINTAKEI 165 (168)
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 468999999999 9999998887654
No 115
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.80 E-value=1.3e-18 Score=158.05 Aligned_cols=156 Identities=20% Similarity=0.232 Sum_probs=107.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|++|+|||||+++|+.........++.. +.......+......+.+|||||+.+|...+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~---------------~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE---------------DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh---------------hhEEEEEEECCEEEEEEEEECCCcccchHHHH
Confidence 799999999999999999998765543333221 00011111222235788999999999999999
Q ss_pred HHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 171 RILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
.+++.+|++++|+|+.+.. ......++..+.. .++|+++|+||+|+...+. ...++........ ..+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~-~~~~~~~~~~~~~-------~~~ 138 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERV-VSTEEGKELARQW-------GCP 138 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce-EcHHHHHHHHHHc-------CCE
Confidence 9999999999999988642 2233344443333 2579999999999875321 1112222222221 257
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++++||++|. |+.++++.|.+.+.
T Consensus 139 ~~~~Sa~~~~----------~i~~l~~~l~~~~~ 162 (164)
T smart00173 139 FLETSAKERV----------NVDEAFYDLVREIR 162 (164)
T ss_pred EEEeecCCCC----------CHHHHHHHHHHHHh
Confidence 9999999999 99999999987654
No 116
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.80 E-value=1.2e-18 Score=158.37 Aligned_cols=156 Identities=20% Similarity=0.276 Sum_probs=111.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCCh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFG 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~ 166 (512)
..+|+++|.+|+|||||+++|+.........++. +.+.. ...+...+ ..+.+|||||+..+.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTI--------------GVEFA--TRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceEEE--EEEEEECCEEEEEEEEeCCChHHHH
Confidence 4689999999999999999999876654433332 22222 22333333 478999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
..+..+++.+|++++|+|+.+. .......|+..+.+. ++|+++|+||+|+...+ ....++....... .
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~-~~~~~~~~~~~~~-------~ 138 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR-AVPTEEAKAFAEK-------N 138 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-cCCHHHHHHHHHH-------c
Confidence 8889999999999999998763 223344566655543 57999999999986532 1122233333221 1
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++.+++.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 164 (165)
T cd01868 139 GLSFIETSALDGT----------NVEEAFKQLLTEI 164 (165)
T ss_pred CCEEEEEECCCCC----------CHHHHHHHHHHHh
Confidence 3468999999999 9999999988764
No 117
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=8.1e-19 Score=176.80 Aligned_cols=160 Identities=27% Similarity=0.336 Sum_probs=131.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC---
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~--- 164 (512)
...+|+|+|.+|+|||||+|+|++....+..... |+|.+.-...++|++.++.++||.|...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a---------------GTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA---------------GTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCC---------------CccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 5789999999999999999999998776655443 8899999999999999999999999753
Q ss_pred -------C-hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC---CchhhHhhhHHHHH
Q 010392 165 -------F-GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA---RPDYVINSTFELFI 233 (512)
Q Consensus 165 -------~-~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~---~~~~~~~~~~~~~~ 233 (512)
| ...+..++..+|.+++|+|+.+++..|+......+.+.+.++++|+||+|+.+. ..++...++...+.
T Consensus 242 i~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~ 321 (444)
T COG1160 242 ITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP 321 (444)
T ss_pred cccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc
Confidence 2 134567788999999999999999999999999999999999999999998764 23334444444443
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+.. .|++++||++|. ++..|++++....
T Consensus 322 ~l~~------a~i~~iSA~~~~----------~i~~l~~~i~~~~ 350 (444)
T COG1160 322 FLDF------APIVFISALTGQ----------GLDKLFEAIKEIY 350 (444)
T ss_pred cccC------CeEEEEEecCCC----------ChHHHHHHHHHHH
Confidence 3332 479999999999 8888888877643
No 118
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.80 E-value=1.4e-18 Score=157.38 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=107.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE--ECCeeEEEEeCCCCCCChHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT--YNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~--~~~~~i~liDtPG~~~~~~~ 168 (512)
+|+++|.+|+|||||+++|+...+.....+++ +.........+. ....+++||||||+++|...
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 67 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTI--------------GVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcE--------------EEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHh
Confidence 79999999999999999999875543333322 112211112222 22467999999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH--cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~--~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
+..+++.+|++++|+|+.+... .....|+..+.. .++|+++|+||+|+...+. ...++.......+ .+|
T Consensus 68 ~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-v~~~~~~~~~~~~-------~~~ 139 (162)
T cd04106 68 TKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAV-ITNEEAEALAKRL-------QLP 139 (162)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccC-CCHHHHHHHHHHc-------CCe
Confidence 9999999999999999877432 233344444433 2689999999999865321 1122333333222 347
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
++++||++|. |++++++.|...
T Consensus 140 ~~~~Sa~~~~----------~v~~l~~~l~~~ 161 (162)
T cd04106 140 LFRTSVKDDF----------NVTELFEYLAEK 161 (162)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHh
Confidence 9999999998 999999988753
No 119
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.80 E-value=1.6e-19 Score=141.07 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=68.1
Q ss_pred CCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceE
Q 010392 386 VEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQK 465 (512)
Q Consensus 386 ~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~ 465 (512)
||+|+++++|+|.+ ..+ .++|.++|.++.+|||+|++.+|++|+|++|+|||++||+|+++||+++||++|
T Consensus 1 ~p~Pv~~~~i~p~~----~~d-----~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v 71 (75)
T PF14492_consen 1 FPPPVLSVAIEPKN----KED-----EPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEV 71 (75)
T ss_dssp SSS-SEEEEEEESS----HHH-----HHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBE
T ss_pred CCCCeEEEEEEECC----HhH-----HHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCee
Confidence 68999999999876 455 789999999999999999999999999999999999999999999999999999
Q ss_pred Eeec
Q 010392 466 NIWG 469 (512)
Q Consensus 466 ~~~~ 469 (512)
+++.
T Consensus 72 ~~~~ 75 (75)
T PF14492_consen 72 EFGK 75 (75)
T ss_dssp EEE-
T ss_pred EecC
Confidence 9873
No 120
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.79 E-value=1.5e-18 Score=160.23 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=110.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE----------ECCeeEEEE
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT----------YNDTKINII 157 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~----------~~~~~i~li 157 (512)
...+|+++|.+|+|||||+++|+...+.....+++ +.+.......+. .....+.||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTV--------------GIDFREKRVVYNSSGPGGTLGRGQRIHLQLW 68 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc--------------ceEEEEEEEEEcCccccccccCCCEEEEEEE
Confidence 45789999999999999999998876654433332 222211111111 123578999
Q ss_pred eCCCCCCChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHH
Q 010392 158 DTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELF 232 (512)
Q Consensus 158 DtPG~~~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~ 232 (512)
||||+..|...+..+++.+|++++|+|+++.. ......|+..+... +.|+++|+||+|+...+. ...++..+..
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~-v~~~~~~~~~ 147 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ-VSEEQAKALA 147 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCc-cCHHHHHHHH
Confidence 99999999999999999999999999987632 23344566555543 578999999999865321 1122333333
Q ss_pred HHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 233 ~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
... .++++++||++|. |++++++.|.+.+
T Consensus 148 ~~~-------~~~~~e~Sak~~~----------~v~~l~~~l~~~~ 176 (180)
T cd04127 148 DKY-------GIPYFETSAATGT----------NVEKAVERLLDLV 176 (180)
T ss_pred HHc-------CCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 222 3478999999999 8999999887643
No 121
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=2.3e-18 Score=181.20 Aligned_cols=162 Identities=27% Similarity=0.288 Sum_probs=121.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|++|+|||||+|+|++........ ..|+|.+.....+.+++..+.+|||||+.++..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSD---------------IAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGK 235 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCC---------------CCCceECcEeEEEEECCcEEEEEECCCcccccc
Confidence 45789999999999999999999765432211 226677776677778888999999999865432
Q ss_pred -----------HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 168 -----------EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 168 -----------~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
....+++.+|++|+|+|+.++...++..++..+.+.++|+++|+||+|+.. + ....+++.+.+....
T Consensus 236 ~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-~-~~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 236 VTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK-D-EKTREEFKKELRRKL 313 (429)
T ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC-C-HHHHHHHHHHHHHhc
Confidence 124567889999999999999999999999999999999999999999972 1 222333333332211
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
. ....+|++++||++|. |+.++++.+.+..
T Consensus 314 ~--~~~~~~vi~~SA~~g~----------~v~~l~~~i~~~~ 343 (429)
T TIGR03594 314 P--FLDFAPIVFISALTGQ----------GVDKLLDAIDEVY 343 (429)
T ss_pred c--cCCCCceEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 1 1123689999999999 8888888877643
No 122
>PTZ00369 Ras-like protein; Provisional
Probab=99.79 E-value=1.9e-18 Score=161.09 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=109.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|++|+|||||++++++..+.....++. +.+. .....+......++||||||+.+|...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI--------------EDSY-RKQCVIDEETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch--------------hhEE-EEEEEECCEEEEEEEEeCCCCccchhh
Confidence 4689999999999999999999876543333322 1111 111222333456889999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
+..+++.+|++++|+|+++... .....|+..+... ++|+++|+||+|+...+.-. ..+........ .
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~-~~~~~~~~~~~-------~ 141 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVS-TGEGQELAKSF-------G 141 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC-HHHHHHHHHHh-------C
Confidence 9999999999999999887432 3344555554432 67999999999986432111 11222222211 3
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+|++++||++|. |+.++++.+.+.+.
T Consensus 142 ~~~~e~Sak~~~----------gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 142 IPFLETSAKQRV----------NVDEAFYELVREIR 167 (189)
T ss_pred CEEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 579999999999 89999988887653
No 123
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.79 E-value=2.4e-18 Score=156.38 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=107.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~~~~ 167 (512)
.+|+++|.+|+|||||+++++...+.....+++ +.+. ...+... ...+.||||||+..|..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--------------EDSY---RKQVEVDGQQCMLEILDTAGTEQFTA 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc--------------hheE---EEEEEECCEEEEEEEEECCCcccchh
Confidence 479999999999999999999765543333332 1111 1123333 35678999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..+++.+|++++|+|.++.. ......++..+.. .++|+++|+||+|+...... ..++..+.....
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~------- 136 (164)
T cd04175 65 MRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV-GKEQGQNLARQW------- 136 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEE-cHHHHHHHHHHh-------
Confidence 9999999999999999987632 2334455555543 35899999999999753211 112222221111
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++++.+.+
T Consensus 137 ~~~~~~~Sa~~~~----------~v~~~~~~l~~~l 162 (164)
T cd04175 137 GCAFLETSAKAKI----------NVNEIFYDLVRQI 162 (164)
T ss_pred CCEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 3479999999999 9999999998754
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.79 E-value=1.5e-18 Score=156.75 Aligned_cols=152 Identities=21% Similarity=0.206 Sum_probs=104.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|++++|||||+++|....... ..+ |+......+.+.+..+.+|||||+.+|...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~------------------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIP------------------TIGFNVETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCC------------------ccCcCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 58999999999999999997654321 111 11122234556778999999999999999999
Q ss_pred HHHHhccEEEEEEeCCCCCc-hhHHHHHHH-HHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 171 RILNMVEGVLLVVDSVEGPM-PQTRFVLKK-ALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~~-~~~~~~l~~-~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
.++..+|++|+|+|+++... ....+++.. +.. .++|+++|+||+|+.... ...++...+... ......++
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~--~~~~~~~~ 136 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLS--ELKDRTWS 136 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCcc--ccCCCcEE
Confidence 99999999999999887422 222333332 222 368999999999987543 122232222111 11112357
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
++++||++|. |++++++.+.+
T Consensus 137 ~~~~Sa~~~~----------gi~~l~~~l~~ 157 (158)
T cd04151 137 IFKTSAIKGE----------GLDEGMDWLVN 157 (158)
T ss_pred EEEeeccCCC----------CHHHHHHHHhc
Confidence 9999999999 99999998864
No 125
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=3e-18 Score=156.34 Aligned_cols=161 Identities=27% Similarity=0.326 Sum_probs=112.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh--
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG-- 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~-- 166 (512)
.++|+++|++|+|||||+++|++........ ..+.+.......+...+..+++|||||+.+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD---------------IAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC---------------CCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 4679999999999999999998764322111 12344444445566677889999999986541
Q ss_pred ---------HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC
Q 010392 167 ---------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (512)
Q Consensus 167 ---------~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~ 237 (512)
.....++..+|++++|+|+.++...+...++..+...+.|+++++||+|+...+ ....+++.+.+.....
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-SKTMKEFKKEIRRKLP 145 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-HHHHHHHHHHHHhhcc
Confidence 112345678999999999998877777777787777889999999999987542 1122222222222111
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
. ....+++++||+++. |+.++++.+.+.
T Consensus 146 ~--~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 173 (174)
T cd01895 146 F--LDYAPIVFISALTGQ----------GVDKLFDAIDEV 173 (174)
T ss_pred c--ccCCceEEEeccCCC----------CHHHHHHHHHHh
Confidence 0 113579999999999 999999888653
No 126
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.79 E-value=3e-18 Score=156.09 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=107.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|.+|+|||||+++++...+.....++. +.+. ............+.+|||||+.+|....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--------------EDTY-RQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc--------------hheE-EEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 479999999999999999999876543333322 1111 1112223344678999999999999888
Q ss_pred HHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
..++..+|++|+|+|.++... .....++..+.. .++|+++|+||+|+...+. -..++....... .
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~-------~ 138 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE-VSSNEGAACATE-------W 138 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe-ecHHHHHHHHHH-------h
Confidence 888999999999999877432 344556655554 3589999999999865321 111111111111 1
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.++++++||++|. |+.+++++|.+.
T Consensus 139 ~~~~~e~SA~~g~----------~v~~~f~~l~~~ 163 (165)
T cd04140 139 NCAFMETSAKTNH----------NVQELFQELLNL 163 (165)
T ss_pred CCcEEEeecCCCC----------CHHHHHHHHHhc
Confidence 3468999999999 999999998753
No 127
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.79 E-value=1.8e-18 Score=158.51 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=109.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|..|+|||||+++++.+.+...+.+++ +.+.......+......++||||||+.+|...+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATI--------------GVDFEMERFEILGVPFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------------eeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHH
Confidence 68999999999999999999887754444443 2222222222222235789999999999999999
Q ss_pred HHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHcC----CcEEEEEeccCCCCCCchhh-HhhhHHHHHHhcCCcccccc
Q 010392 171 RILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEFG----HAVVVVVNKIDRPSARPDYV-INSTFELFIELNATDEQCDF 244 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~~----~p~ivviNK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 244 (512)
.+++.+|++++|+|+.+. .......|+..+.+.. .|+++|+||+|+...+.... ..+......++ ..
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~-------~~ 140 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM-------QA 140 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHc-------CC
Confidence 999999999999998763 3344456666654432 46899999999864421111 12222222222 24
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+++++||++|. |+.++++.+.+.+
T Consensus 141 ~~~e~Sa~~g~----------~v~~lf~~l~~~~ 164 (170)
T cd04108 141 EYWSVSALSGE----------NVREFFFRVAALT 164 (170)
T ss_pred eEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 68999999999 9999999888764
No 128
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=3.9e-18 Score=180.76 Aligned_cols=157 Identities=21% Similarity=0.402 Sum_probs=120.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC--
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD-- 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~-- 164 (512)
...++|+|+|.+|+|||||+|+|++........ ..|+|.+.....+.+.+..+.||||||+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~---------------~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~ 100 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVED---------------VPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA 100 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccC---------------CCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc
Confidence 356789999999999999999999765432211 226777777777888899999999999863
Q ss_pred ------ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 165 ------FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 165 ------~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
+...+..++..+|++|+|+|+.++.......++..++..++|+++|+||+|+..... +..+.+ .++..
T Consensus 101 ~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~-----~~~~~~-~~g~~ 174 (472)
T PRK03003 101 KGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA-----DAAALW-SLGLG 174 (472)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch-----hhHHHH-hcCCC
Confidence 334456678899999999999998777777788888888999999999999864321 111211 22221
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
..+++||++|. |+.+|++.|.+.++.
T Consensus 175 ------~~~~iSA~~g~----------gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 175 ------EPHPVSALHGR----------GVGDLLDAVLAALPE 200 (472)
T ss_pred ------CeEEEEcCCCC----------CcHHHHHHHHhhccc
Confidence 14689999999 999999999998866
No 129
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.79 E-value=1.9e-18 Score=157.70 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=108.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|..|+|||||+++++.........++. +..+.............+.+|||||++++....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL--------------GVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce--------------eeEEEEEEEEECCEEEEEEEEECCCChhhcccc
Confidence 379999999999999999999765543333322 222222112222334678999999999988888
Q ss_pred HHHHHhccEEEEEEeCCCCCch-hHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 170 ERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~~-~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
..++..+|++|+|+|.++...- ....|+..+... ++|+++|+||+|+..... ..+..+.. . ...+++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~---~~~~~~~~-~------~~~~~~ 136 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV---KAKQITFH-R------KKNLQY 136 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccC---CHHHHHHH-H------HcCCEE
Confidence 8889999999999998875332 334455555543 589999999999873221 11111111 1 123568
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+++||++|. |++++++.|.+.+.
T Consensus 137 ~e~Sa~~~~----------~v~~~f~~l~~~~~ 159 (166)
T cd00877 137 YEISAKSNY----------NFEKPFLWLARKLL 159 (166)
T ss_pred EEEeCCCCC----------ChHHHHHHHHHHHH
Confidence 999999999 99999999987653
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.79 E-value=2.6e-18 Score=156.61 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=103.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH--
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG-- 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~-- 167 (512)
++|+++|++|+|||||+++|++........ .+.|.......+.+++.+++||||||+.+...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPY----------------PFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCC----------------CCcccceeEEEEccCceEEEEEECCCcCCccccC
Confidence 579999999999999999999865432111 13344455555666778999999999853211
Q ss_pred ------HHHHH-HHhccEEEEEEeCCCCCc---hhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHh
Q 010392 168 ------EVERI-LNMVEGVLLVVDSVEGPM---PQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (512)
Q Consensus 168 ------~~~~~-~~~~d~~llvida~~g~~---~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~ 235 (512)
..... ...+|++|+|+|+.+... .....++..++.. +.|+++|+||+|+...+. ..+..+.. .
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~---~~~~~~~~-~- 139 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFED---LSEIEEEE-E- 139 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhh---HHHHHHhh-h-
Confidence 11111 233689999999886422 3334566666665 789999999999865321 11122211 1
Q ss_pred cCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 236 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
...++++++||++|. |++++++++.+.+
T Consensus 140 -----~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 167 (168)
T cd01897 140 -----LEGEEVLKISTLTEE----------GVDEVKNKACELL 167 (168)
T ss_pred -----hccCceEEEEecccC----------CHHHHHHHHHHHh
Confidence 124579999999999 9999999988754
No 131
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.79 E-value=2.9e-18 Score=156.75 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=108.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|.+|+|||||+++|+...+.....++. |.........+......+.||||||+.+|..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI--------------GVEFLNKDLEVDGHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCce--------------eeEEEEEEEEECCeEEEEEEEeCCChHHHHH
Confidence 45789999999999999999999766543332222 2222122222222335678999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH-------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~-------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
.+..+++.+|++++|+|.++.. ......|...+.. .++|+++|+||+|+... ....+++.+...+..
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~--- 144 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER--QVSTEEAQAWCRENG--- 144 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc--ccCHHHHHHHHHHCC---
Confidence 9999999999999999987643 2233344443332 25799999999998632 122334444433322
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
..+++++||++|. |+.++++.+.+.
T Consensus 145 ---~~~~~e~Sa~~~~----------~v~~~~~~~~~~ 169 (170)
T cd04116 145 ---DYPYFETSAKDAT----------NVAAAFEEAVRR 169 (170)
T ss_pred ---CCeEEEEECCCCC----------CHHHHHHHHHhh
Confidence 2368999999999 999999998764
No 132
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=2.7e-18 Score=180.67 Aligned_cols=154 Identities=25% Similarity=0.390 Sum_probs=121.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC------
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD------ 164 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~------ 164 (512)
+|+++|++|+|||||+|+|++........ ..|+|.+.....+.|.+..+++|||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~---------------~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSD---------------TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecC---------------CCCcccCceEEEEEECCeEEEEEECCCCCCcchhHH
Confidence 48999999999999999999765432211 126777777788889999999999999843
Q ss_pred --ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 165 --FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 165 --~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
+...+..++..+|++++|+|+..+......++...+++.++|+++|+||+|+...+. .. ..+..++..
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~~----~~~~~lg~~---- 135 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--VA----AEFYSLGFG---- 135 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--cH----HHHHhcCCC----
Confidence 334566678899999999999999988888888999989999999999999875431 11 112233322
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
+++++||.+|. |+.++++.+.+.++..
T Consensus 136 --~~~~vSa~~g~----------gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 136 --EPIPISAEHGR----------GIGDLLDAILELLPEE 162 (429)
T ss_pred --CeEEEeCCcCC----------ChHHHHHHHHHhcCcc
Confidence 48999999999 9999999999998764
No 133
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.79 E-value=2.5e-18 Score=172.96 Aligned_cols=189 Identities=16% Similarity=0.229 Sum_probs=130.1
Q ss_pred cccccCCCCcccccccccccchHHHHhhhhccCCCCccchhHHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 36 FGYNLSSSPITTTSLKFRHCNTATQRHRRIQCSVSPPAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 36 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
.+|..+.++++++|..+......++....++ .+-+..|+++|.+|+|||||+++|+.....
T Consensus 123 ~gn~~f~~~~~~~p~~~~~g~~g~~~~~~le-------------------lk~~adV~lvG~pnaGKSTLl~~lt~~~~~ 183 (329)
T TIGR02729 123 LGNAHFKSSTNRAPRFATPGEPGEERWLRLE-------------------LKLLADVGLVGLPNAGKSTLISAVSAAKPK 183 (329)
T ss_pred CCcccccCccCCCCcccCCCCCCcEEEEEEE-------------------eeccccEEEEcCCCCCHHHHHHHHhcCCcc
Confidence 6788888888888876665555444444333 345678999999999999999999876433
Q ss_pred CcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-eeEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCCC
Q 010392 116 FRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 116 ~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~~ 187 (512)
+...+ .+|.......+.+.+ ..++||||||+.+ +...+.+.+..+|++++|+|++.
T Consensus 184 va~y~----------------fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~ 247 (329)
T TIGR02729 184 IADYP----------------FTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISP 247 (329)
T ss_pred ccCCC----------------CCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCcc
Confidence 22222 235555556667766 8999999999853 33445666778999999999875
Q ss_pred C----CchhHHHHHHHHHHc-----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCC
Q 010392 188 G----PMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGL 258 (512)
Q Consensus 188 g----~~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~ 258 (512)
. ...+...+.+.+..+ ++|+++|+||+|+.... ..+++.+.+.+. ..++++++||+++.
T Consensus 248 ~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~---~~~~~~~~l~~~------~~~~vi~iSAktg~--- 315 (329)
T TIGR02729 248 LDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE---ELAELLKELKKA------LGKPVFPISALTGE--- 315 (329)
T ss_pred ccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH---HHHHHHHHHHHH------cCCcEEEEEccCCc---
Confidence 3 223334444444433 58999999999987542 122333322211 12469999999999
Q ss_pred CCCCcCCCchhhHHHHHHhC
Q 010392 259 SPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 259 ~~~~~~~gi~~Ll~~i~~~l 278 (512)
|+++|++.|.+.+
T Consensus 316 -------GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 -------GLDELLYALAELL 328 (329)
T ss_pred -------CHHHHHHHHHHHh
Confidence 9999999998765
No 134
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.78 E-value=3e-18 Score=161.14 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=111.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|+.|+|||||+++|+...+.....++. +..+. ...+.+.+ ..+.||||||+..|
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~--------------~~~~~--~~~~~~~~~~~~l~l~D~~G~~~~ 68 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI--------------GVDFK--IRTVEINGERVKLQIWDTAGQERF 68 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccc--------------cceeE--EEEEEECCEEEEEEEEeCCCchhH
Confidence 46899999999999999999999776543333322 22222 22333333 57889999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
...+..+++.+|++++|+|+++.. ......|+..+... ..|+++|+||+|+..... ...++........
T Consensus 69 ~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~-~~~~~~~~~~~~~------- 140 (199)
T cd04110 69 RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKV-VETEDAYKFAGQM------- 140 (199)
T ss_pred HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccc-cCHHHHHHHHHHc-------
Confidence 999999999999999999987642 23344566655543 479999999999875321 1122233322221
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.+++++|.+.+.
T Consensus 141 ~~~~~e~Sa~~~~----------gi~~lf~~l~~~~~ 167 (199)
T cd04110 141 GISLFETSAKENI----------NVEEMFNCITELVL 167 (199)
T ss_pred CCEEEEEECCCCc----------CHHHHHHHHHHHHH
Confidence 3569999999999 99999999988663
No 135
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.78 E-value=2.5e-18 Score=157.29 Aligned_cols=154 Identities=21% Similarity=0.250 Sum_probs=107.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|+.|+|||||+++|....... ..+++ |.++ ..+.+.+..+.+|||||+..+...
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~--------------g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTV--------------GFNV----ETVTYKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCc--------------ccce----EEEEECCEEEEEEECCCCHHHHHH
Confidence 4689999999999999999998654421 11221 2222 234456789999999999999888
Q ss_pred HHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 169 VERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
+..++..+|++|+|+|+++. .......++..... .++|+++|+||+|+.... ..+++.+.+. +. ......
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~-~~-~~~~~~ 144 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM---KPHEIQEKLG-LT-RIRDRN 144 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC---CHHHHHHHcC-CC-ccCCCc
Confidence 89999999999999998874 23344444544432 358999999999986431 1233333321 11 111123
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
++++++||++|. |+.++|++|.+
T Consensus 145 ~~~~~~SAk~g~----------gv~~~~~~l~~ 167 (168)
T cd04149 145 WYVQPSCATSGD----------GLYEGLTWLSS 167 (168)
T ss_pred EEEEEeeCCCCC----------ChHHHHHHHhc
Confidence 568999999999 99999998864
No 136
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.78 E-value=2.8e-18 Score=156.99 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=109.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|..|+|||||+++|....... ..+ |+......+.+.+..+.+|||||+.++...+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~------------------T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIP------------------TIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCC------------------cCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 58999999999999999998764321 111 22222234567788999999999999999999
Q ss_pred HHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 171 RILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
.++..+|++++|+|+++. .......++..+... +.|+++|+||+|+.... ..+++.+.+..... .....++
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~-~~~~~~~ 137 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL---SVEEMTELLSLHKL-CCGRSWY 137 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC---CHHHHHHHhCCccc-cCCCcEE
Confidence 999999999999998763 233444555555432 47999999999986431 22333333211100 0111346
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
++++||++|. |+.+++++|.+.++.
T Consensus 138 ~~~~Sa~~g~----------gv~~~f~~l~~~~~~ 162 (169)
T cd04158 138 IQGCDARSGM----------GLYEGLDWLSRQLVA 162 (169)
T ss_pred EEeCcCCCCC----------CHHHHHHHHHHHHhh
Confidence 8899999999 999999999987643
No 137
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.78 E-value=3.9e-18 Score=154.52 Aligned_cols=152 Identities=18% Similarity=0.264 Sum_probs=105.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|..|+|||||+++|....+. ...+++ |..+ ..+......+.+|||||+..|...+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~--------------g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTI--------------GFNV----ETVEYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCCC--------------Ccce----EEEEECCEEEEEEECCCCHhHHHHHH
Confidence 6999999999999999999765443 222221 2222 23455678899999999999999999
Q ss_pred HHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 171 RILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
.+++.+|++|+|+|+++. ...+..+++..+.. .+.|+++++||+|+..... .+++.+.+. +. ......+.
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~-~~-~~~~~~~~ 137 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLG-LH-SLRNRNWY 137 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhC-cc-ccCCCCEE
Confidence 999999999999998763 23334454544432 2589999999999864321 223333221 11 01122456
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
++++||++|. |+++++++|.+
T Consensus 138 ~~~~Sak~g~----------gv~~~~~~l~~ 158 (159)
T cd04150 138 IQATCATSGD----------GLYEGLDWLSN 158 (159)
T ss_pred EEEeeCCCCC----------CHHHHHHHHhc
Confidence 7899999999 99999998864
No 138
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.78 E-value=3.8e-18 Score=154.31 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=109.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 167 (512)
.+|+++|++|+|||||+++|++........++ .+.+.....+.+++ ..+++|||||+..+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 64 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQAT----------------IGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCc----------------eeeeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 37999999999999999999987665433322 23333333444444 4689999999999998
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH-c--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE-F--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~-~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
.+...++.+|++++|+|.++.. ......++..+.. . +.|+++++||+|+.... ....++........ .
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~-~~~~~~~~~~~~~~-------~ 136 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR-QVSTEEGEKKAKEL-------N 136 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC-ccCHHHHHHHHHHh-------C
Confidence 8999999999999999988743 2334455555433 3 38999999999985322 12223333332221 3
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
++++++||++|. |++++++++.+.
T Consensus 137 ~~~~~~Sa~~~~----------~v~~l~~~i~~~ 160 (161)
T cd01861 137 AMFIETSAKAGH----------NVKELFRKIASA 160 (161)
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHh
Confidence 568999999999 999999998765
No 139
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.78 E-value=1.1e-18 Score=150.02 Aligned_cols=164 Identities=20% Similarity=0.210 Sum_probs=125.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.....+|+++|.+|+|||||+-++..+.+....+.++ |+.+......+..+..++.||||+|+++|
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tI--------------GvDFkvk~m~vdg~~~KlaiWDTAGqErF 73 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTI--------------GVDFKVKVMQVDGKRLKLAIWDTAGQERF 73 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCcee--------------eeeEEEEEEEEcCceEEEEEEeccchHhh
Confidence 3456899999999999999999999998887766666 88888888888888899999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
+..+..+++.+.++|+|+|.+.. .+.....|++.+..+ ++-.++|.||+|....+ ....++-.++.++..
T Consensus 74 RtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R-~V~reEG~kfAr~h~---- 148 (209)
T KOG0080|consen 74 RTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER-VVDREEGLKFARKHR---- 148 (209)
T ss_pred hccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc-cccHHHHHHHHHhhC----
Confidence 99999999999999999997763 344555666666655 34478899999976433 112223333333322
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC-CCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI-PGP 281 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l-p~p 281 (512)
.-++++||++.+ +++..++.++..+ ..|
T Consensus 149 ---~LFiE~SAkt~~----------~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 149 ---CLFIECSAKTRE----------NVQCCFEELVEKIIETP 177 (209)
T ss_pred ---cEEEEcchhhhc----------cHHHHHHHHHHHHhcCc
Confidence 248999999999 7777777776553 444
No 140
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=2.5e-18 Score=160.68 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=110.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCc-CccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFR-DNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~-~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
.+|+++|.+|+|||||+++|....+... ...+. +.+.......+......++||||||+.+|...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATV--------------GIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV 66 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcc--------------cceeEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 3699999999999999999988765432 22221 22222222222223457899999999999888
Q ss_pred HHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
+..+++.+|++|+|+|+++.. ......|+..+.+. ++|+++|+||+|+...+ ....++...+.... .+
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~-~~~~~~~~~l~~~~-------~~ 138 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER-VVKREDGERLAKEY-------GV 138 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc-ccCHHHHHHHHHHc-------CC
Confidence 888999999999999987742 23345566555554 57999999999986432 11112233322221 34
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
|++++||++|. |+.+++++|.+.++..
T Consensus 139 ~~~e~Sa~~~~----------~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 139 PFMETSAKTGL----------NVELAFTAVAKELKHR 165 (191)
T ss_pred eEEEEeCCCCC----------CHHHHHHHHHHHHHHh
Confidence 79999999999 9999999999877544
No 141
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.78 E-value=4.5e-18 Score=155.26 Aligned_cols=153 Identities=20% Similarity=0.288 Sum_probs=102.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe-eEEEEeCCCCCC-----
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-KINIIDTPGHSD----- 164 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~-~i~liDtPG~~~----- 164 (512)
+|+++|++|+|||||+++|.+........ .+.|.......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~----------------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADY----------------PFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCC----------------CccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 69999999999999999998643311111 12344444445566665 899999999742
Q ss_pred --ChHHHHHHHHhccEEEEEEeCCCC--CchhHHHHHHHHHHc-----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHh
Q 010392 165 --FGGEVERILNMVEGVLLVVDSVEG--PMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (512)
Q Consensus 165 --~~~~~~~~~~~~d~~llvida~~g--~~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~ 235 (512)
+...+.+.+..+|++++|+|+++. .......+.+.+... ++|+++|+||+|+.... ...+.+.......
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~ 143 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFELLKELLKEL 143 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHHHHHHHhhC
Confidence 233344456679999999999875 233344555555443 58999999999986532 1222222222211
Q ss_pred cCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 236 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
...+++++||++|. |+.++++.+.+.
T Consensus 144 ------~~~~~~~~Sa~~~~----------gi~~l~~~i~~~ 169 (170)
T cd01898 144 ------WGKPVFPISALTGE----------GLDELLRKLAEL 169 (170)
T ss_pred ------CCCCEEEEecCCCC----------CHHHHHHHHHhh
Confidence 13468999999999 999999998764
No 142
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.78 E-value=3.8e-18 Score=156.00 Aligned_cols=155 Identities=20% Similarity=0.222 Sum_probs=105.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGGE 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~ 168 (512)
+|+++|++|+|||||+++|+..........+. +.+.. ...+.+.+ ..+++|||||+..|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~--------------~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATI--------------GADFL--TKEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCcc--------------ceEEE--EEEEEECCEEEEEEEEeCCChHHHHhH
Confidence 79999999999999999999876543332222 21111 12233333 46789999999999998
Q ss_pred HHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH-------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~-------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
+..+++.+|++|+|+|+.+... .....|...+.. .++|+++|+||+|+...+ ....+++.......+
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~---- 140 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKR-QVSTKKAQQWCQSNG---- 140 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccc-ccCHHHHHHHHHHcC----
Confidence 9999999999999999887532 222233222221 168999999999997422 112233333333222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.+.+.+
T Consensus 141 --~~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 166 (172)
T cd01862 141 --NIPYFETSAKEAI----------NVEQAFETIARKA 166 (172)
T ss_pred --CceEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 2468999999999 9999999988754
No 143
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.78 E-value=3.4e-18 Score=154.95 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=109.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 167 (512)
.||+++|++|+|||||+++|++.........+. +.......+.+.+ ..+++|||||+..|..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTI----------------GVDFKTKTIEVDGKRVKLQIWDTAGQERFRS 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce----------------eeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 379999999999999999999775533322222 2222233344444 5789999999999998
Q ss_pred HHHHHHHhccEEEEEEeCCCCCch-hHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~-~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
....+++.+|++++|+|+.+.... ....|+..+.. .++|+++|+||+|+...+ ....+...+.... ..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~-~~~~~~~~~~~~~-------~~ 136 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR-QVSREEAEAFAEE-------HG 136 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc-CCCHHHHHHHHHH-------cC
Confidence 899999999999999998874332 23345555544 358999999999986422 1112223332222 13
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++++++||.+|. |+.++++.|.+.++
T Consensus 137 ~~~~e~Sa~~~~----------~i~~l~~~i~~~~~ 162 (164)
T smart00175 137 LPFFETSAKTNT----------NVEEAFEELAREIL 162 (164)
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 468999999999 99999999988653
No 144
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.78 E-value=3e-18 Score=158.99 Aligned_cols=162 Identities=22% Similarity=0.257 Sum_probs=107.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEE-EECCeeEEEEeCCCCCCChH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI-TYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~-~~~~~~i~liDtPG~~~~~~ 167 (512)
..+|+++|+.|+|||||++++++..+... .++. |.+........ .+.+..+++|||||++.|..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~--------------~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTK--------------GFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCcc--------------ccceeEEEeeccCCCceEEEEEECCCcHhHHH
Confidence 35799999999999999999987655322 2221 22222211111 23567899999999999998
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHH----HHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKA----LEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~----~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..+++.+|++++|+|+++.. ......++..+ ...++|+++|+||+|+.... ..+++...+. +.......
T Consensus 68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~---~~~~~~~~~~-~~~~~~~~ 143 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL---SVSEVEKLLA-LHELSAST 143 (183)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC---CHHHHHHHhC-ccccCCCC
Confidence 8999999999999999988742 12222333322 33468999999999986421 1222222221 11111112
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |++++++.|.+.+.
T Consensus 144 ~~~~~~~SA~~~~----------gi~~l~~~l~~~l~ 170 (183)
T cd04152 144 PWHVQPACAIIGE----------GLQEGLEKLYEMIL 170 (183)
T ss_pred ceEEEEeecccCC----------CHHHHHHHHHHHHH
Confidence 3568999999999 99999999887663
No 145
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.78 E-value=4.9e-18 Score=155.93 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=107.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 167 (512)
.+|+++|..|+|||||+++++...+.....+++ +.... ..+..++ ..++||||||+.+|..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~--------------~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI--------------EDAYK---QQARIDNEPALLDILDTAGQAEFTA 65 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcc--------------cceEE---EEEEECCEEEEEEEEeCCCchhhHH
Confidence 579999999999999999999876654333332 11111 1122333 5689999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..+++.+|++++|+|.++... .....|+..+.. .++|+++|+||+|+...+. -..++..++.+. .
T Consensus 66 l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~-v~~~~~~~~a~~-------~ 137 (172)
T cd04141 66 MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ-VTTEEGRNLARE-------F 137 (172)
T ss_pred HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc-cCHHHHHHHHHH-------h
Confidence 99999999999999999887433 333444444443 3589999999999864321 111222222222 2
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++|+.+.+.+
T Consensus 138 ~~~~~e~Sa~~~~----------~v~~~f~~l~~~~ 163 (172)
T cd04141 138 NCPFFETSAALRH----------YIDDAFHGLVREI 163 (172)
T ss_pred CCEEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 4579999999999 8999999888765
No 146
>PLN03110 Rab GTPase; Provisional
Probab=99.78 E-value=3.8e-18 Score=162.54 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=114.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+...+|+++|+.|+|||||+++|++........+++ |.+.......+......++||||||+..|
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~--------------g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~ 74 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI--------------GVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------------eEEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 3456899999999999999999999876654333332 33322222222223358899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+..+++.+|++|+|+|..+. .......|+..+... ++|+++|+||+|+...+ .+..+....+.. .
T Consensus 75 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~~~~~~l~~------~ 146 (216)
T PLN03110 75 RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR--SVAEEDGQALAE------K 146 (216)
T ss_pred HHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccccc--CCCHHHHHHHHH------H
Confidence 99999999999999999998764 333445666666553 68999999999986432 111111122211 1
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
..++++++||++|. |+.++++.+.+.+..
T Consensus 147 ~~~~~~e~SA~~g~----------~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 147 EGLSFLETSALEAT----------NVEKAFQTILLEIYH 175 (216)
T ss_pred cCCEEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 24579999999999 899999999877644
No 147
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=4.4e-18 Score=155.27 Aligned_cols=158 Identities=20% Similarity=0.176 Sum_probs=109.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
...++|+++|++|+|||||+++|+..........+ +........+.+.+ ..+.+|||||+.+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT----------------IGVDFMIKTVEIKGEKIKLQIWDTAGQER 68 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc----------------eeeEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 45689999999999999999999875443222221 12223333444555 4578999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCch-hHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~-~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|...+..++..+|++++|+|+.++... ....|+..+.. .++|+++|+||+|+...+ ++..++...+....
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~--~i~~~~~~~~~~~~---- 142 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR--EVSQQRAEEFSDAQ---- 142 (169)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--ccCHHHHHHHHHHc----
Confidence 999989999999999999998875322 22344444433 368999999999986432 22223333332221
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
..+++++||++|. |+.++++.|.+.+
T Consensus 143 --~~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 168 (169)
T cd04114 143 --DMYYLETSAKESD----------NVEKLFLDLACRL 168 (169)
T ss_pred --CCeEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 2468999999999 9999999988653
No 148
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.78 E-value=5.9e-18 Score=153.56 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=106.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|.+|+|||||+++++.........+++ + ........+......+.||||||++.|...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~--------------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI--------------E-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch--------------h-heEEEEEEECCEEEEEEEEECCCcccccchH
Confidence 479999999999999999999876654333322 0 0111111222223467899999999999999
Q ss_pred HHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 170 ERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
..+++.+|++++|+|.++.. ......|+..+.. .++|+++|+||+|+..... ....+........ .+
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~~ 138 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESERE-VSSAEGRALAEEW-------GC 138 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCc-cCHHHHHHHHHHh-------CC
Confidence 99999999999999988742 3344555555544 3689999999999864321 1111112211111 24
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+++++||++|. |+.++++.+.+.+
T Consensus 139 ~~~~~Sa~~~~----------~v~~l~~~l~~~l 162 (163)
T cd04176 139 PFMETSAKSKT----------MVNELFAEIVRQM 162 (163)
T ss_pred EEEEecCCCCC----------CHHHHHHHHHHhc
Confidence 78999999999 9999999988754
No 149
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.6e-18 Score=151.65 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=127.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
+....++.++|+.|+|||+|+-+++.+.+......++ |+.......++..+..+++||||.||+.|
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~Ti--------------Gvefg~r~~~id~k~IKlqiwDtaGqe~f 68 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTI--------------GVEFGARMVTIDGKQIKLQIWDTAGQESF 68 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCcccccccee--------------eeeeceeEEEEcCceEEEEEEecCCcHHH
Confidence 4467899999999999999999999999987777665 77776777777777889999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHcC---CcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFG---HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~~---~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+..+++.+.++|||+|.+. ..+.....|+..++.+. .-+++++||+|+...+ +-..++-+.+.++.
T Consensus 69 rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR-~Vs~EEGeaFA~eh------ 141 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR-EVSKEEGEAFAREH------ 141 (216)
T ss_pred HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc-cccHHHHHHHHHHc------
Confidence 9999999999999999999765 45677778888888774 5689999999997654 33334444443332
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.++++.+||+++. ++++.|......
T Consensus 142 -gLifmETSakt~~----------~VEEaF~nta~~ 166 (216)
T KOG0098|consen 142 -GLIFMETSAKTAE----------NVEEAFINTAKE 166 (216)
T ss_pred -Cceeehhhhhhhh----------hHHHHHHHHHHH
Confidence 3457899999999 777777655543
No 150
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.78 E-value=4.5e-18 Score=161.96 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=110.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC---CeeEEEEeCCCCCCChH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGHSDFGG 167 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~~~i~liDtPG~~~~~~ 167 (512)
+|+++|.+|+|||||+++|++..+...+.++. + .+.....+.+. ...+.||||||+..|..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~--------------~--~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~ 65 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTI--------------G--LDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK 65 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCce--------------e--EEEEEEEEEeCCCCEEEEEEEECCCcHHHHH
Confidence 79999999999999999999876654443332 2 22222233332 46889999999999998
Q ss_pred HHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc------CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 168 EVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF------GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~------~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
.+..+++.+|++|+|+|+++. .......|+..+... +.|+++|+||+|+...+ ....++...+....
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~-~v~~~~~~~~~~~~----- 139 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR-TVKDDKHARFAQAN----- 139 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc-ccCHHHHHHHHHHc-----
Confidence 899999999999999998864 334445566666543 35789999999996432 11222233332222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.++++.+.+.+.
T Consensus 140 --~~~~~~iSAktg~----------gv~~lf~~l~~~l~ 166 (215)
T cd04109 140 --GMESCLVSAKTGD----------RVNLLFQQLAAELL 166 (215)
T ss_pred --CCEEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 2468999999999 99999999988753
No 151
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=3.6e-18 Score=163.00 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=112.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|..|+|||||+++++...+.....+++ |.++............++.+|||||+++|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~ti--------------g~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI--------------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcc--------------ceeEEEEEEEECCeEEEEEEEECCCchhhh
Confidence 346789999999999999999998876654443333 333332222222334689999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
..+..+++.+|++|+|+|.++... .....|+..+... ++|+++|+||+|+...... .+++ +... ...
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~--~~~~-~~~~-------~~~ 146 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-TFHR-------KKN 146 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCC--HHHH-HHHH-------hcC
Confidence 888889999999999999887532 3334565555533 5899999999998642211 1122 2111 123
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++++++||++|. |+.++|++|.+.+.
T Consensus 147 ~~~~e~SAk~~~----------~i~~~f~~l~~~~~ 172 (219)
T PLN03071 147 LQYYEISAKSNY----------NFEKPFLYLARKLA 172 (219)
T ss_pred CEEEEcCCCCCC----------CHHHHHHHHHHHHH
Confidence 568999999999 89999999887663
No 152
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.78 E-value=3.8e-18 Score=156.98 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=112.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|+.++|||||+.+++.+.+...+.+++ +.+.. ....+.....+++||||+|+++|....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti--------------~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--------------FDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLR 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcc--------------eeeeE-EEEEECCEEEEEEEEECCCCccccccc
Confidence 579999999999999999999887755444443 21221 111222234678999999999999989
Q ss_pred HHHHHhccEEEEEEeCCCCC-chhH-HHHHHHHHHc--CCcEEEEEeccCCCCCCc---------hhhHhhhHHHHHHhc
Q 010392 170 ERILNMVEGVLLVVDSVEGP-MPQT-RFVLKKALEF--GHAVVVVVNKIDRPSARP---------DYVINSTFELFIELN 236 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~-~~~~-~~~l~~~~~~--~~p~ivviNK~Dl~~~~~---------~~~~~~~~~~~~~~~ 236 (512)
..+++.+|++|+|+|.++.. .... ..|+..++.. +.|+++|+||+|+.+.+. ....++...+....
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~- 145 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQI- 145 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHc-
Confidence 89999999999999987642 3333 4577766543 589999999999964321 01122222222222
Q ss_pred CCcccccc-ceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 237 ATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 237 ~~~~~~~~-pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.. +++++||++|. +++++|+.+.+.+-.
T Consensus 146 ------~~~~~~E~SAk~~~----------nV~~~F~~~~~~~~~ 174 (176)
T cd04133 146 ------GAAAYIECSSKTQQ----------NVKAVFDAAIKVVLQ 174 (176)
T ss_pred ------CCCEEEECCCCccc----------CHHHHHHHHHHHHhc
Confidence 22 58999999999 999999999986533
No 153
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.78 E-value=3.8e-18 Score=154.38 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=107.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|++|+|||||+++|+.........++. +.+.......+......+.+|||||+..|....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATI--------------GVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcc--------------cceEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 379999999999999999999765543322222 333332222232334678999999999998888
Q ss_pred HHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
...++.+|++++|+|+++... .....|+..+.. .+.|+++|+||+|+.... ...++..+.... ..+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~--~~~~~~~~~~~~-------~~~ 137 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE--VTREEGLKFARK-------HNM 137 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc--cCHHHHHHHHHH-------cCC
Confidence 889999999999999876432 223344444443 357899999999997332 112233333222 245
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
+++++||++|. |+.++++.+.+.
T Consensus 138 ~~~~~Sa~~~~----------gi~~~~~~~~~~ 160 (161)
T cd01863 138 LFIETSAKTRD----------GVQQAFEELVEK 160 (161)
T ss_pred EEEEEecCCCC----------CHHHHHHHHHHh
Confidence 79999999999 999999998765
No 154
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.78 E-value=3.9e-18 Score=157.99 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=108.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|..|+|||||+.+++...+...+.+++ |..+......+......+.+|||+|+..|...+.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~--------------g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTL--------------GVNFMEKTISIRGTEITFSIWDLGGQREFINMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc--------------ceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhH
Confidence 69999999999999999999887654444443 3333222222222236789999999999998888
Q ss_pred HHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCc----hhhHhhhHHHHHHhcCCcccc
Q 010392 171 RILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARP----DYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+++.+|++++|+|.++. .......|+..++.. ..| ++|+||+|+..... ....++..+.... .
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~-------~ 139 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA-------M 139 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH-------c
Confidence 999999999999998774 233444666666553 346 67899999863211 1112222222211 2
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+.+++++||++|. |++++++.+.+.+
T Consensus 140 ~~~~~e~SAk~g~----------~v~~lf~~l~~~l 165 (182)
T cd04128 140 KAPLIFCSTSHSI----------NVQKIFKIVLAKA 165 (182)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3578999999999 9999999988765
No 155
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=4.9e-18 Score=178.92 Aligned_cols=160 Identities=28% Similarity=0.331 Sum_probs=120.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh-
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~- 166 (512)
...+|+++|++|+|||||+|+|++........ ..|+|.+.....+.+.+..+.+|||||+.+..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~---------------~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD---------------IAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGK 236 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCceEEEEEEEEEECCeeEEEEECCCCCCCcc
Confidence 46899999999999999999999765332211 23677777777777888999999999975422
Q ss_pred ----------HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 167 ----------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 167 ----------~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
.....++..+|++|+|+|+.++...++..++..+.+.++|+++|+||+|+...+ ..+++.+.+....
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~---~~~~~~~~~~~~l 313 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEK---TMEEFKKELRRRL 313 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHH---HHHHHHHHHHHhc
Confidence 123457788999999999999999999999999999999999999999987321 2222332222111
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
. ....+|++++||++|. |+.++++.+.+.
T Consensus 314 ~--~~~~~~i~~~SA~~~~----------gv~~l~~~i~~~ 342 (435)
T PRK00093 314 P--FLDYAPIVFISALTGQ----------GVDKLLEAIDEA 342 (435)
T ss_pred c--cccCCCEEEEeCCCCC----------CHHHHHHHHHHH
Confidence 1 1124689999999999 888888877653
No 156
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.77 E-value=3.9e-18 Score=153.89 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=108.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|+.|+|||||++++++.... .... |+......+.+.+..+.+|||||+..+...+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~------------------t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIP------------------TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCC------------------CcCcceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 5899999999999999999987522 1111 22223344566788999999999999988899
Q ss_pred HHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 171 RILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
.++..+|++++|+|+... .......++..+.. .+.|+++|+||+|+.... ..+++.+.+.... .....++
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~--~~~~~~~ 136 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEK--ILGRRWH 136 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhh--ccCCcEE
Confidence 999999999999999875 23334444443333 468999999999987543 1223333322110 1123568
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
++++||++|. |++++++.|..
T Consensus 137 ~~~~Sa~~~~----------gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTGD----------GLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCCC----------CHHHHHHHHhh
Confidence 9999999999 99999998865
No 157
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.77 E-value=5.6e-18 Score=156.00 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=109.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|..|+|||||+++|...... ...+++ |.. ...+.+++..+.+|||||+..+..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~--------------~~~----~~~~~~~~~~l~l~D~~G~~~~~~ 72 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTI--------------GFN----VETVTYKNISFTVWDVGGQDKIRP 72 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCcc--------------ccc----eEEEEECCEEEEEEECCCChhhHH
Confidence 3578999999999999999999755432 111221 222 223456778999999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..+++.+|++|+|+|+++. ......+++..+.. .++|+++|+||+|+.+... ..++.+.+.. .. ....
T Consensus 73 ~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~-~~-~~~~ 147 (175)
T smart00177 73 LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK---AAEITEKLGL-HS-IRDR 147 (175)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC---HHHHHHHhCc-cc-cCCC
Confidence 999999999999999998763 23444555555432 2579999999999875421 1233332211 10 1112
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+.++++||++|. |+.+++++|.+.+
T Consensus 148 ~~~~~~~Sa~~g~----------gv~e~~~~l~~~~ 173 (175)
T smart00177 148 NWYIQPTCATSGD----------GLYEGLTWLSNNL 173 (175)
T ss_pred cEEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 3457789999999 9999999988754
No 158
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=4.2e-18 Score=157.39 Aligned_cols=152 Identities=21% Similarity=0.241 Sum_probs=106.1
Q ss_pred hcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 83 LMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 83 ~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
+.++....+|+++|++|+|||||+++|++..+....... .|.|....... ++ ..+.+|||||+
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~--------------~~~t~~~~~~~--~~-~~~~liDtpG~ 74 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT--------------PGRTQLINFFE--VN-DGFRLVDLPGY 74 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC--------------CCcceEEEEEE--eC-CcEEEEeCCCC
Confidence 344567889999999999999999999976432111111 14444433222 22 37999999997
Q ss_pred CC----------ChHHHHHHHHh---ccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC-CchhhHhhh
Q 010392 163 SD----------FGGEVERILNM---VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-RPDYVINST 228 (512)
Q Consensus 163 ~~----------~~~~~~~~~~~---~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~-~~~~~~~~~ 228 (512)
.+ |......+++. +|++++|+|+..+.......++..+...++|+++|+||+|+... +.....+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i 154 (179)
T TIGR03598 75 GYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKI 154 (179)
T ss_pred ccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 42 33333445543 57999999999888888888888888889999999999998743 233445556
Q ss_pred HHHHHHhcCCccccccceeeeccccCcc
Q 010392 229 FELFIELNATDEQCDFQAIYASGIQGKA 256 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~Sa~~g~~ 256 (512)
++.+...+ ..++++++||++|+|
T Consensus 155 ~~~l~~~~-----~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 155 KKALKKDA-----DDPSVQLFSSLKKTG 177 (179)
T ss_pred HHHHhhcc-----CCCceEEEECCCCCC
Confidence 66554432 234699999999994
No 159
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=5e-18 Score=157.19 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=109.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
+...+|+++|..++|||||+++|...... ...+++ |.+ ...+.+.+..+++|||||+..|.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~--------------g~~----~~~~~~~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTI--------------GFN----VETVEYKNISFTVWDVGGQDKIR 75 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCc--------------cee----EEEEEECCEEEEEEECCCCHHHH
Confidence 34578999999999999999999765443 122221 222 23456778899999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc-c
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD-E 240 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~ 240 (512)
..+..+++.+|++|+|+|+++.. ......++..+.. .++|+++|+||+|+.... ..+++.+.+ +... .
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~l---~l~~~~ 149 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKL---GLHSLR 149 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC---CHHHHHHHh---CccccC
Confidence 99999999999999999988632 2233334443322 268999999999987543 123333332 2211 1
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
...+.++++||++|+ |+.+++++|.+.+
T Consensus 150 ~~~~~~~~~Sa~~g~----------gv~e~~~~l~~~~ 177 (181)
T PLN00223 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
T ss_pred CCceEEEeccCCCCC----------CHHHHHHHHHHHH
Confidence 123456789999999 9999999998765
No 160
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.77 E-value=6.4e-18 Score=154.73 Aligned_cols=159 Identities=17% Similarity=0.199 Sum_probs=106.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCCh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFG 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~ 166 (512)
..+|+++|++|+|||||+++++..........+. +.. .....+.+.+ ..+.+|||||+.+|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~--------------~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI--------------GVD--FRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccce--------------eEE--EEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 4789999999999999999998765433222221 222 2223334444 678999999999887
Q ss_pred -HHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 167 -GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 167 -~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
..+..+++.+|++++|+|+++... .....|+..+... ++|+++|+||+|+...+. ...++..++...
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~------ 138 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQ-VPTDLAQRFADA------ 138 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcC-CCHHHHHHHHHH------
Confidence 457778889999999999887533 3334555555543 489999999999865321 111222222211
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
..++++++||+++.+. .++.+++..+.+.+
T Consensus 139 -~~~~~~e~Sa~~~~~~-------~~i~~~f~~l~~~~ 168 (170)
T cd04115 139 -HSMPLFETSAKDPSEN-------DHVEAIFMTLAHKL 168 (170)
T ss_pred -cCCcEEEEeccCCcCC-------CCHHHHHHHHHHHh
Confidence 1357999999993211 17888888887654
No 161
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.77 E-value=6e-18 Score=151.65 Aligned_cols=153 Identities=24% Similarity=0.294 Sum_probs=109.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|.+|+|||||+++|+..........+. +.+..............+++||+||+..+...+.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTI--------------GVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCce--------------eeeeEEEEEEECCEEEEEEEEecCChHHHHHHHH
Confidence 69999999999999999999876654433222 2223222222223346789999999999999999
Q ss_pred HHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHcC---CcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 171 RILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFG---HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~~---~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
.+++.+|++++|+|+.+.. ......|+..+.... .|+++++||+|+.... ....+++.+.... ..+++
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~-------~~~~~ 139 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR-QVSTEEAQQFAKE-------NGLLF 139 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc-cccHHHHHHHHHH-------cCCeE
Confidence 9999999999999988732 233345666666654 8999999999986221 2223444444332 24579
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHH
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
+.+||++|. |+.++++.|.
T Consensus 140 ~~~sa~~~~----------~i~~~~~~i~ 158 (159)
T cd00154 140 FETSAKTGE----------NVEELFQSLA 158 (159)
T ss_pred EEEecCCCC----------CHHHHHHHHh
Confidence 999999998 9999998875
No 162
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.77 E-value=4.6e-18 Score=158.74 Aligned_cols=154 Identities=16% Similarity=0.212 Sum_probs=106.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGGE 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~ 168 (512)
+|+++|.+|+|||||+++|+...+.....+++ +... . ..+...+ ..+.||||||+.+|...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~--------------~~~~-~--~~~~~~~~~~~l~i~Dt~G~~~~~~~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI--------------EDSY-R--KQVVVDGQPCMLEVLDTAGQEEYTAL 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch--------------HhhE-E--EEEEECCEEEEEEEEECCCchhhHHH
Confidence 48999999999999999999876654333332 1111 1 1122333 45889999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
+..+++.+|++|+|+|.++.. ......|+..+.. .++|+++|+||+|+...+. ....+..+.....
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~-v~~~~~~~~~~~~------ 136 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE-VSTEEGAALARRL------ 136 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc-cCHHHHHHHHHHh------
Confidence 999999999999999987643 2334455555543 3579999999999864321 1111222222111
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.++++.+.+.+-
T Consensus 137 -~~~~~e~SAk~~~----------~v~~l~~~l~~~l~ 163 (190)
T cd04144 137 -GCEFIEASAKTNV----------NVERAFYTLVRALR 163 (190)
T ss_pred -CCEEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 3468999999999 89999999887653
No 163
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=5.7e-18 Score=176.72 Aligned_cols=190 Identities=17% Similarity=0.180 Sum_probs=131.5
Q ss_pred cccccCCCCcccccccccccchHHHHhhhhccCCCCccchhHHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 36 FGYNLSSSPITTTSLKFRHCNTATQRHRRIQCSVSPPAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 36 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
.+|..++++++++|.-.......++....+. .+....|+|+|.+|+|||||+++|+.....
T Consensus 125 ~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~le-------------------Lk~~adV~LVG~PNAGKSTLln~Ls~akpk 185 (500)
T PRK12296 125 LGNAALASKARKAPGFALLGEPGEERDLVLE-------------------LKSVADVGLVGFPSAGKSSLISALSAAKPK 185 (500)
T ss_pred CCCcccCCccCCCCccccCCCCCceEEEEEE-------------------ecccceEEEEEcCCCCHHHHHHHHhcCCcc
Confidence 7888899999998876555555444444443 345678999999999999999999876443
Q ss_pred CcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC-------hHHHHHHHHhccEEEEEEeCCCC
Q 010392 116 FRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF-------GGEVERILNMVEGVLLVVDSVEG 188 (512)
Q Consensus 116 ~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~-------~~~~~~~~~~~d~~llvida~~g 188 (512)
+...+ ++|+......+.+.+..++||||||+.+- .....+++..+|++|+|||++..
T Consensus 186 Iadyp----------------fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~ 249 (500)
T PRK12296 186 IADYP----------------FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATL 249 (500)
T ss_pred ccccC----------------cccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCccc
Confidence 32221 55777778888888899999999997531 23445667889999999998641
Q ss_pred -----CchhHHHHHHHHH--------------HcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeee
Q 010392 189 -----PMPQTRFVLKKAL--------------EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYA 249 (512)
Q Consensus 189 -----~~~~~~~~l~~~~--------------~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~ 249 (512)
.......+...+. ..++|+|||+||+|+.++. ...+.+.+.+... .++++++
T Consensus 250 e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~~l~~~-------g~~Vf~I 320 (500)
T PRK12296 250 EPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRPELEAR-------GWPVFEV 320 (500)
T ss_pred ccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHHHHHHc-------CCeEEEE
Confidence 1112222222221 2368999999999986432 2223333333221 3579999
Q ss_pred ccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 250 SGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 250 Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
||+++. |+.+|+++|.+.+.
T Consensus 321 SA~tge----------GLdEL~~~L~ell~ 340 (500)
T PRK12296 321 SAASRE----------GLRELSFALAELVE 340 (500)
T ss_pred ECCCCC----------CHHHHHHHHHHHHH
Confidence 999999 99999988887663
No 164
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.77 E-value=6.8e-18 Score=155.27 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=108.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|++|+|||||+++|+...... ..+ |+......+.+.+..+.+|||||+..|..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~------------------t~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 74 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSP------------------TIGSNVEEIVYKNIRFLMWDIGGQESLRS 74 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCC------------------ccccceEEEEECCeEEEEEECCCCHHHHH
Confidence 35789999999999999999998765432 111 22223345667788999999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHH-H---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKAL-E---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~-~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..++..+|++++|+|+++.. ......++..+. . .++|+++++||+|+.... ..+++.+.+... .....
T Consensus 75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~---~~~~i~~~l~~~--~~~~~ 149 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM---TPAEISESLGLT--SIRDH 149 (174)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC---CHHHHHHHhCcc--cccCC
Confidence 9999999999999999988742 222233333332 2 258999999999986531 112222222110 01123
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
.++++++||++|. |+++++++|.+
T Consensus 150 ~~~~~~~SA~~g~----------gi~e~~~~l~~ 173 (174)
T cd04153 150 TWHIQGCCALTGE----------GLPEGLDWIAS 173 (174)
T ss_pred ceEEEecccCCCC----------CHHHHHHHHhc
Confidence 4679999999999 99999998864
No 165
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.77 E-value=3.1e-18 Score=159.67 Aligned_cols=160 Identities=17% Similarity=0.235 Sum_probs=111.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.+..+|+++|+.|+|||||+++|...... ...+ |.......+.+.+..+.+|||||+.++.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~------------------T~~~~~~~i~~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVP------------------TLHPTSEELTIGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCC------------------ccCcceEEEEECCEEEEEEECCCCHHHH
Confidence 34678999999999999999999875432 1111 1222334566678899999999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC----
Q 010392 167 GEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA---- 237 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~---- 237 (512)
..+..+++.+|++++|+|+.+. .......++..+.. .+.|+++|+||+|+.... ..+++.+.+.....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~ 154 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV---SEEELRQALGLYGTTTGK 154 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc---CHHHHHHHhCcccccccc
Confidence 8888999999999999998763 22233444444432 458999999999986432 22344444321110
Q ss_pred -----CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 238 -----TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 238 -----~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
......++++++||++|. |+.+++++|.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~Sa~~~~----------gv~e~~~~l~~~~ 190 (190)
T cd00879 155 GVSLKVSGIRPIEVFMCSVVKRQ----------GYGEAFRWLSQYL 190 (190)
T ss_pred cccccccCceeEEEEEeEecCCC----------ChHHHHHHHHhhC
Confidence 011134578999999999 9999999987653
No 166
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=6e-18 Score=154.55 Aligned_cols=159 Identities=21% Similarity=0.317 Sum_probs=108.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|..|+|||||+++|.+. +.....+++ |. ....+.+.+..+++|||||+..+...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~--------------g~----~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTV--------------GF----TPTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcc--------------cc----eEEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999865 222222221 22 2335667788999999999999999999
Q ss_pred HHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHH--HhcCCccccc
Q 010392 171 RILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFI--ELNATDEQCD 243 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 243 (512)
.+++.+|++++|+|+++. .......++..+.. .++|+++|+||+|+...... .++.+.+. .+ .......
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~~~l~~~-~~~~~~~ 137 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG---ADVIEYLSLEKL-VNENKSL 137 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH---HHHHHhcCcccc-cCCCCce
Confidence 999999999999998874 33444556665543 36899999999999765421 12222211 11 1111234
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
++++++||++|.+- ....|+.+.|++|..
T Consensus 138 ~~~~~~Sa~~g~~~----~~~~g~~~~~~wl~~ 166 (167)
T cd04161 138 CHIEPCSAIEGLGK----KIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEEeEceeCCCC----ccccCHHHHHHHHhc
Confidence 67899999998310 001188888888864
No 167
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.77 E-value=7.9e-18 Score=153.28 Aligned_cols=151 Identities=21% Similarity=0.300 Sum_probs=107.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHH
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVER 171 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~ 171 (512)
|+++|+.|+|||||+++|+...+.....++. |. ....+.+++.++.+|||||+.+|...+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~--------------g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTT--------------GF----NSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccC--------------Cc----ceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 7899999999999999999765543322222 22 12345677889999999999999999999
Q ss_pred HHHhccEEEEEEeCCCCC-chhHHHHHHHHHH--cCCcEEEEEeccCCCCCCchhhHhhhHHHH--HHhcCCccccccce
Q 010392 172 ILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELF--IELNATDEQCDFQA 246 (512)
Q Consensus 172 ~~~~~d~~llvida~~g~-~~~~~~~l~~~~~--~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~pv 246 (512)
+++.+|++++|+|+++.. ....+.++..+.. .++|+++|+||+|+..+. ...++.+.+ ..+. ....+++
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~---~~~~~~~ 137 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR---SVQEIHKELELEPIA---RGRRWIL 137 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC---CHHHHHHHhCChhhc---CCCceEE
Confidence 999999999999987743 2344455555543 468999999999987543 222222222 1111 1235678
Q ss_pred eeecccc------CccCCCCCCcCCCchhhHHHHHH
Q 010392 247 IYASGIQ------GKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 247 i~~Sa~~------g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
+++||++ ++ |+.++|+.+++
T Consensus 138 ~~~Sa~~~~s~~~~~----------~v~~~~~~~~~ 163 (164)
T cd04162 138 QGTSLDDDGSPSRME----------AVKDLLSQLIN 163 (164)
T ss_pred EEeeecCCCChhHHH----------HHHHHHHHHhc
Confidence 8888887 66 88999888764
No 168
>PLN03108 Rab family protein; Provisional
Probab=99.77 E-value=8.8e-18 Score=159.36 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=111.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
+...+|+|+|+.|+|||||+++|+...+.....+++ +.+.......+......+.+|||||+..|.
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti--------------~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~ 69 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc--------------cceEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 456899999999999999999999876654433332 333322222222223568899999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
..+..+++.+|++|+|+|+++.. ......|+..+... ++|+++|+||+|+...+. ...++..+.....
T Consensus 70 ~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~------- 141 (210)
T PLN03108 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGEQFAKEH------- 141 (210)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccC-CCHHHHHHHHHHc-------
Confidence 88889999999999999987642 33334555544433 579999999999865321 1222333333222
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++|+++.+.+
T Consensus 142 ~~~~~e~Sa~~~~----------~v~e~f~~l~~~~ 167 (210)
T PLN03108 142 GLIFMEASAKTAQ----------NVEEAFIKTAAKI 167 (210)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3579999999999 8888888877665
No 169
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=1e-17 Score=152.69 Aligned_cols=157 Identities=14% Similarity=0.134 Sum_probs=106.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|+.|+|||||+++|.+..+........ ...++. ..+...+.++++|||||+.++...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-------------~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-------------PEITIP---ADVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-------------cceEee---eeecCCeEEEEEEeCCCchhhhHHHh
Confidence 79999999999999999999876543221110 011111 12223456899999999998888888
Q ss_pred HHHHhccEEEEEEeCCCCCchhH--HHHHHHHHHc--CCcEEEEEeccCCCCCCchh-hHhhhHHHHHHhcCCccccccc
Q 010392 171 RILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEF--GHAVVVVVNKIDRPSARPDY-VINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~~~~~--~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p 245 (512)
.++..+|++++|+|+++...-+. ..|+..++.. ++|+++|+||+|+.+..... ..+++......... ..+
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~ 140 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-----IET 140 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-----ccE
Confidence 88899999999999887544333 2344555443 68999999999997543211 11222221111111 125
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++++||++|. |++++++.+.+.+
T Consensus 141 ~~e~Sa~~~~----------~v~~lf~~~~~~~ 163 (166)
T cd01893 141 CVECSAKTLI----------NVSEVFYYAQKAV 163 (166)
T ss_pred EEEecccccc----------CHHHHHHHHHHHh
Confidence 8999999999 9999999888765
No 170
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.77 E-value=9.2e-18 Score=151.56 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=107.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.||+++|.+|+|||||+++|+..........+. +.+.......+......+++|||||+..+...+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 66 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTT--------------QASFFQKTVNIGGKRIDLAIWDTAGQERYHALG 66 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc--------------ceeEEEEEEEECCEEEEEEEEECCchHHHHHhh
Confidence 379999999999999999999876543322221 111111112222233468999999999998888
Q ss_pred HHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
..+++.+|++++|+|++++.. .....++..+... ++|+++|+||+|+.... ....+++.+..... ..+
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~-------~~~ 138 (162)
T cd04123 67 PIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR-VVSKSEAEEYAKSV-------GAK 138 (162)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-CCCHHHHHHHHHHc-------CCE
Confidence 888999999999999887533 2333444444433 58999999999987432 11122333333222 346
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++++||++|. |+.++++++.+.+
T Consensus 139 ~~~~s~~~~~----------gi~~~~~~l~~~~ 161 (162)
T cd04123 139 HFETSAKTGK----------GIEELFLSLAKRM 161 (162)
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 8999999999 9999999988754
No 171
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.77 E-value=8.5e-18 Score=157.17 Aligned_cols=157 Identities=15% Similarity=0.235 Sum_probs=107.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCC-cCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVF-RDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~-~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
+|+++|.+|+|||||+++|+...+.. ...+++ |.+.......+......+.+|||||+.++....
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTI--------------GAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccce--------------eeEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 79999999999999999999876643 122222 222222222222223467899999999988888
Q ss_pred HHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc--CCcEEEEEeccCCCCCCc--hh-hHhhhHHHHHHhcCCccccc
Q 010392 170 ERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF--GHAVVVVVNKIDRPSARP--DY-VINSTFELFIELNATDEQCD 243 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~--~~-~~~~~~~~~~~~~~~~~~~~ 243 (512)
..++..+|++++|+|.++.. ......|+..+... +.|+++|+||+|+..... .. ..+++.++.... .
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-------~ 140 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI-------K 140 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc-------C
Confidence 88888999999999987642 22334566666554 589999999999864321 11 112233322221 3
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++++++||++|. |+.+|++.+.+.+
T Consensus 141 ~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 165 (193)
T cd04118 141 AQHFETSSKTGQ----------NVDELFQKVAEDF 165 (193)
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 468999999999 9999999998765
No 172
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.77 E-value=1.1e-17 Score=151.71 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=107.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGGE 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~ 168 (512)
+|+++|+.|+|||||+++++...+.....+++ |..... ..+...+ ..+.+|||||+.+|...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~--------------~~~~~~--~~~~~~~~~~~l~i~D~~g~~~~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTI--------------GVDFKM--KTIEVDGIKVRIQIWDTAGQERYQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCce--------------eeEEEE--EEEEECCEEEEEEEEeCCCcHhHHhh
Confidence 69999999999999999999876654333332 222222 2333333 57889999999999988
Q ss_pred HHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 169 VERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
+..+++.+|++++|+|.++. .......|+..+... +.|+++|+||+|+...+.. ..++.....+.. ..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v-~~~~~~~~~~~~-------~~ 137 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQV-GDEQGNKLAKEY-------GM 137 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCC-CHHHHHHHHHHc-------CC
Confidence 88999999999999997763 333444555555443 5799999999998654311 112222222221 24
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
+++++||++|. |++++++.|.+.
T Consensus 138 ~~~e~Sa~~~~----------~v~~~f~~l~~~ 160 (161)
T cd04117 138 DFFETSACTNS----------NIKESFTRLTEL 160 (161)
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHhh
Confidence 68999999998 999999998764
No 173
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.77 E-value=1.2e-17 Score=158.89 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=110.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|..|+|||||+++|+...+.. ..++ +........+....+.||||||+..|....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~T------------------ig~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVST------------------VGGAFYLKQWGPYNISIWDTAGREQFHGLG 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCc------------------cceEEEEEEeeEEEEEEEeCCCcccchhhH
Confidence 369999999999999999999876542 2222 212222234456789999999999999999
Q ss_pred HHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCC------------------CchhhHhh
Q 010392 170 ERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSA------------------RPDYVINS 227 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~------------------~~~~~~~~ 227 (512)
..+++.+|++|+|+|.++. .......+|..+... ++|+++|+||+|+... ...-..++
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 9999999999999998874 333444555555443 4799999999999641 01111223
Q ss_pred hHHHHHHhcCC-------ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 228 TFELFIELNAT-------DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 228 ~~~~~~~~~~~-------~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
...+..+.+.. .....++++++||++|. |+.++|+.+.+.+
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~----------~V~elf~~i~~~~ 189 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY----------NVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 33333332210 00123579999999999 8999998888754
No 174
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=7.4e-18 Score=154.29 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=108.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCC-CcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKV-FRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~-~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
+..+|+++|..|+|||||++++++..+. ..+.+++ +.........+......+.+||++|...+.
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~--------------~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 68 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTI--------------KPRYAVNTVEVYGQEKYLILREVGEDEVAI 68 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCcc--------------CcceEEEEEEECCeEEEEEEEecCCccccc
Confidence 5789999999999999999999987765 3333333 222222222222223568899999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH-cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE-FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~-~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
.....++..+|++|+|+|+++.. .....+++..+.. .++|+++|+||+|+..... ....+..+....++..
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~------ 141 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ-RYEVQPDEFCRKLGLP------ 141 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccc-ccccCHHHHHHHcCCC------
Confidence 88888899999999999987742 2223344444422 3689999999999864321 1111222222222221
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+++++||++|. |+.++++.+.+.+-
T Consensus 142 ~~~~~Sa~~~~----------~v~~lf~~l~~~~~ 166 (169)
T cd01892 142 PPLHFSSKLGD----------SSNELFTKLATAAQ 166 (169)
T ss_pred CCEEEEeccCc----------cHHHHHHHHHHHhh
Confidence 25899999999 99999999987653
No 175
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=8.6e-18 Score=173.36 Aligned_cols=188 Identities=16% Similarity=0.241 Sum_probs=128.2
Q ss_pred cccccCCCCcccccccccccchHHHHhhhhccCCCCccchhHHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 36 FGYNLSSSPITTTSLKFRHCNTATQRHRRIQCSVSPPAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 36 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
.+|+.+.++++++|.........++....++ .+-+..|+++|.+|+|||||+++|+.....
T Consensus 124 ~gn~~F~~s~~~~p~~~~~G~~ge~~~~~le-------------------lk~~adVglVG~pNaGKSTLLn~Lt~ak~k 184 (424)
T PRK12297 124 RGNAHFATSTNQAPRIAENGEPGEERELRLE-------------------LKLLADVGLVGFPNVGKSTLLSVVSNAKPK 184 (424)
T ss_pred cCchhhcCCCCCCCCcCCCCCCCeEeEEEEe-------------------ecccCcEEEEcCCCCCHHHHHHHHHcCCCc
Confidence 6777788888887765544444333333332 334667999999999999999999976543
Q ss_pred CcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-CeeEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCCC
Q 010392 116 FRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 116 ~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~~ 187 (512)
+...+ .+|+......+.+. +..++||||||+.+ +...+.+.+..+|++|+|+|++.
T Consensus 185 Ia~yp----------------fTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~ 248 (424)
T PRK12297 185 IANYH----------------FTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSG 248 (424)
T ss_pred cccCC----------------cceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCc
Confidence 32222 44666777777776 68899999999854 23344556677999999999864
Q ss_pred C----CchhHHHHHHHHHH-----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCC
Q 010392 188 G----PMPQTRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGL 258 (512)
Q Consensus 188 g----~~~~~~~~l~~~~~-----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~ 258 (512)
. .......+...+.. .++|+++|+||+|+... .+.++++.+ .+. .+++++||+++.
T Consensus 249 ~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~---~l~-------~~i~~iSA~tge--- 313 (424)
T PRK12297 249 SEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKE---KLG-------PKVFPISALTGQ--- 313 (424)
T ss_pred cccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHH---HhC-------CcEEEEeCCCCC---
Confidence 2 22333445555554 36899999999998432 222222222 221 368999999999
Q ss_pred CCCCcCCCchhhHHHHHHhCCC
Q 010392 259 SPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 259 ~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
|+++|++.|.+.+..
T Consensus 314 -------GI~eL~~~L~~~l~~ 328 (424)
T PRK12297 314 -------GLDELLYAVAELLEE 328 (424)
T ss_pred -------CHHHHHHHHHHHHHh
Confidence 999999998877643
No 176
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.6e-18 Score=143.95 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=124.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
-+...++.++|...+|||||+-+.++..+.+....++ |+.+......-..+..++++|||.|++.+
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv--------------GidFKvKTvyr~~kRiklQiwDTagqEry 83 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV--------------GIDFKVKTVYRSDKRIKLQIWDTAGQERY 83 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeee--------------eeeEEEeEeeecccEEEEEEEecccchhh
Confidence 4567799999999999999999999998887776666 77766664444445578999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+-.+++.++++||++|.++ ........|.-+++.. +.|+|+|+||+|+.+.+. -..+..+.+..+++.
T Consensus 84 rtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRv-is~e~g~~l~~~LGf---- 158 (193)
T KOG0093|consen 84 RTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERV-ISHERGRQLADQLGF---- 158 (193)
T ss_pred hHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcccee-eeHHHHHHHHHHhCh----
Confidence 9999999999999999999766 4455556666666554 689999999999986542 223445555555655
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
-+|+.||+.+. ++..+++.++..+
T Consensus 159 ---efFEtSaK~Ni----------nVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 159 ---EFFETSAKENI----------NVKQVFERLVDII 182 (193)
T ss_pred ---HHhhhcccccc----------cHHHHHHHHHHHH
Confidence 38999999998 6777777666544
No 177
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.76 E-value=1.4e-17 Score=149.42 Aligned_cols=147 Identities=21% Similarity=0.270 Sum_probs=106.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH-
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE- 168 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~- 168 (512)
.+|+++|++|+|||||+++|++........ ..+++.......+.+.+.++++|||||+.++...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD---------------IAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccC---------------CCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH
Confidence 369999999999999999998764322111 1245555555566777889999999999876432
Q ss_pred -------HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 169 -------VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 169 -------~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
....+..+|++++|+|+...........+.. ..+.|+++|+||+|+...... . ...
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------~------~~~ 129 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------L------SLL 129 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc---------c------ccc
Confidence 3346778999999999997554444444333 457899999999998754311 0 111
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
...+++++||+++. |+++|++.|.+.+
T Consensus 130 ~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 156 (157)
T cd04164 130 AGKPIIAISAKTGE----------GLDELKEALLELA 156 (157)
T ss_pred CCCceEEEECCCCC----------CHHHHHHHHHHhh
Confidence 24579999999998 9999999987754
No 178
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=8.1e-18 Score=151.51 Aligned_cols=147 Identities=23% Similarity=0.309 Sum_probs=106.1
Q ss_pred EEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH-----
Q 010392 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE----- 168 (512)
Q Consensus 94 vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~----- 168 (512)
++|++|+|||||+++|++....... ..++|+......+.+++..+.+|||||+.++...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGN----------------WPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccC----------------CCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 5899999999999999876422111 1266777766777888889999999999877642
Q ss_pred -HHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 169 -VERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 169 -~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
...++. .+|++++|+|+... .....++..+...++|+++|+||+|+.+.+. ...........+ .++
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~-------~~~ 133 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRG--IKIDLDKLSELL-------GVP 133 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccccc--chhhHHHHHHhh-------CCC
Confidence 344554 89999999998863 3344556667778899999999999975431 111222221111 347
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
++++||.+|. |+..+++.+.+.
T Consensus 134 ~~~iSa~~~~----------~~~~l~~~l~~~ 155 (158)
T cd01879 134 VVPTSARKGE----------GIDELKDAIAEL 155 (158)
T ss_pred eEEEEccCCC----------CHHHHHHHHHHH
Confidence 9999999999 999999988765
No 179
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.76 E-value=1.3e-17 Score=154.33 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=110.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
+...+|+++|+.++|||||+.+++...+...+.+++ +.... ....+......+.||||+|+++|.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~--------------~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~ 67 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FENYT-ASFEIDTQRIELSLWDTSGSPYYD 67 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCce--------------eeeeE-EEEEECCEEEEEEEEECCCchhhH
Confidence 346789999999999999999999887755444443 11111 111222234578999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCc-hhH-HHHHHHHHHc--CCcEEEEEeccCCCCCC----------c-hhhHhhhHHH
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPM-PQT-RFVLKKALEF--GHAVVVVVNKIDRPSAR----------P-DYVINSTFEL 231 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~-~~~-~~~l~~~~~~--~~p~ivviNK~Dl~~~~----------~-~~~~~~~~~~ 231 (512)
.....+++.+|++|+|+|.++... ... ..|+..+... +.|+++|+||+|+.+.. . .-..++..++
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANM 147 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHH
Confidence 888889999999999999877432 332 4566666554 57999999999985420 0 1112223333
Q ss_pred HHHhcCCccccccceeeeccccCccCCCCCCcCCC-chhhHHHHHHh
Q 010392 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADD-LGPLFESIMRC 277 (512)
Q Consensus 232 ~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~g-i~~Ll~~i~~~ 277 (512)
.++++. .+++++||++|. + +.++|+.+.+.
T Consensus 148 a~~~~~------~~~~E~SAk~~~----------n~v~~~F~~~~~~ 178 (182)
T cd04172 148 AKQIGA------ATYIECSALQSE----------NSVRDIFHVATLA 178 (182)
T ss_pred HHHcCC------CEEEECCcCCCC----------CCHHHHHHHHHHH
Confidence 322221 368999999999 6 89999888763
No 180
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.76 E-value=9.4e-18 Score=155.79 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=110.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.+..+|+++|.+|+|||||+++|.+...... .+ |.......+.+++.++.+|||||+..+.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~------------------t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 75 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QP------------------TQHPTSEELAIGNIKFTTFDLGGHQQAR 75 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-CC------------------ccccceEEEEECCEEEEEEECCCCHHHH
Confidence 4568899999999999999999987643211 11 1112223455677899999999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC---
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT--- 238 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~--- 238 (512)
..+..++..+|++++|+|+++.. ......++..+.. .++|+++|+||+|+.... ..+++.+.+.-....
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~l~l~~~~~~~ 152 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA---SEDELRYALGLTNTTGSK 152 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC---CHHHHHHHcCCCcccccc
Confidence 89999999999999999987642 2233334443332 478999999999986432 123344333211000
Q ss_pred --ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 239 --DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 239 --~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.....+.++++||++|. |+++++++|.+.
T Consensus 153 ~~~~~~~~~i~~~Sa~~~~----------g~~~~~~wl~~~ 183 (184)
T smart00178 153 GKVGVRPLEVFMCSVVRRM----------GYGEGFKWLSQY 183 (184)
T ss_pred cccCCceeEEEEeecccCC----------ChHHHHHHHHhh
Confidence 01124458999999999 999999999764
No 181
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=1e-17 Score=171.99 Aligned_cols=193 Identities=16% Similarity=0.218 Sum_probs=129.5
Q ss_pred cccccCCCCcccccccccccchHHHHhhhhccCCCCccchhHHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 36 FGYNLSSSPITTTSLKFRHCNTATQRHRRIQCSVSPPAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 36 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
.+|+.+.++++++|.........++....++ .+.+..|+|+|.+|+|||||+|+|+.....
T Consensus 125 ~gn~~f~~~~~~~p~~~~~g~~g~~~~~~le-------------------lk~iadValVG~PNaGKSTLln~Lt~~k~~ 185 (390)
T PRK12298 125 LGNTRFKSSVNRAPRQKTPGTPGEERELKLE-------------------LKLLADVGLLGLPNAGKSTFIRAVSAAKPK 185 (390)
T ss_pred cchhhhccCccCCCcccCCCCCCceEEEEEe-------------------eeccccEEEEcCCCCCHHHHHHHHhCCccc
Confidence 5666777777777755444444333333332 234567999999999999999999876432
Q ss_pred CcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-eeEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCCC
Q 010392 116 FRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 116 ~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~~ 187 (512)
+...+ ++|.......+.+.+ ..+.|+||||+.+ ....+.+++..+|++++|+|+..
T Consensus 186 vs~~p----------------~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~ 249 (390)
T PRK12298 186 VADYP----------------FTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAP 249 (390)
T ss_pred ccCCC----------------CCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCc
Confidence 22221 456667777777765 4699999999864 23445567889999999999762
Q ss_pred ----CCchhHHHHHHHHHHc-----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCC
Q 010392 188 ----GPMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGL 258 (512)
Q Consensus 188 ----g~~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~ 258 (512)
....+...+++.+..+ +.|+++|+||+|+... .+..+.+.++...... ..+++++||+++.
T Consensus 250 ~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~~~~~~-----~~~Vi~ISA~tg~--- 319 (390)
T PRK12298 250 IDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIVEALGW-----EGPVYLISAASGL--- 319 (390)
T ss_pred ccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHHHHhCC-----CCCEEEEECCCCc---
Confidence 2334445555666553 5899999999998643 2222222222221111 1258999999999
Q ss_pred CCCCcCCCchhhHHHHHHhCCC
Q 010392 259 SPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 259 ~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
|+.+|++.|.+.++.
T Consensus 320 -------GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 320 -------GVKELCWDLMTFIEE 334 (390)
T ss_pred -------CHHHHHHHHHHHhhh
Confidence 999999999998864
No 182
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.76 E-value=1.2e-17 Score=156.72 Aligned_cols=157 Identities=19% Similarity=0.164 Sum_probs=103.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCCh--
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFG-- 166 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~-- 166 (512)
+|+|+|.+|+|||||+++|+...+...+.+++ +..+ ....+.+++ ..++||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~--------------~~~~--~~~~i~~~~~~~~l~i~Dt~G~~~~~~~ 65 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTE--------------HRRL--YRPAVVLSGRVYDLHILDVPNMQRYPGT 65 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCcc--------------cccc--ceeEEEECCEEEEEEEEeCCCcccCCcc
Confidence 79999999999999999999876654443332 1111 112233444 578899999987642
Q ss_pred --HH----HHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH------cCCcEEEEEeccCCCCCCchhhHhhhHHHHH
Q 010392 167 --GE----VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (512)
Q Consensus 167 --~~----~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~ 233 (512)
.+ ...++..+|++|+|+|+++... .....++..+.. .++|+++|+||+|+...+.. ..+++.+...
T Consensus 66 ~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~-~~~~~~~~~~ 144 (198)
T cd04142 66 AGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA-PRHVLSVLVR 144 (198)
T ss_pred chhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc-cHHHHHHHHH
Confidence 11 3345788999999999887532 223444444433 35899999999999653211 1112222211
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
. ...++++++||++|. |+++||+.+.+.+-.
T Consensus 145 ~------~~~~~~~e~Sak~g~----------~v~~lf~~i~~~~~~ 175 (198)
T cd04142 145 K------SWKCGYLECSAKYNW----------HILLLFKELLISATT 175 (198)
T ss_pred H------hcCCcEEEecCCCCC----------CHHHHHHHHHHHhhc
Confidence 1 124579999999999 999999998876543
No 183
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=7.9e-18 Score=178.45 Aligned_cols=160 Identities=18% Similarity=0.241 Sum_probs=116.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC--
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF-- 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~-- 165 (512)
..++|+++|++|+|||||+|+|++........ ..|+|.+.....+.+++..+.||||||+.+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~---------------~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDD---------------VAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVK 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC---------------CCCccCCcceEEEEECCEEEEEEECCCcccccc
Confidence 46899999999999999999999765432211 1255666656667788889999999996421
Q ss_pred -------hHH--HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc-hhhHhhhHHHHHHh
Q 010392 166 -------GGE--VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP-DYVINSTFELFIEL 235 (512)
Q Consensus 166 -------~~~--~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~-~~~~~~~~~~~~~~ 235 (512)
... ...+++.+|++++|+|++++...+...++..+...++|+++|+||+|+..... .....++.+.+..
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~- 353 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQ- 353 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhccc-
Confidence 111 12457889999999999999888888888888888999999999999975321 1112222222211
Q ss_pred cCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 236 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
....|++++||++|. |++++++.+.+.+
T Consensus 354 -----~~~~~~~~~SAk~g~----------gv~~lf~~i~~~~ 381 (472)
T PRK03003 354 -----VPWAPRVNISAKTGR----------AVDKLVPALETAL 381 (472)
T ss_pred -----CCCCCEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 113578999999999 8888888887654
No 184
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.76 E-value=1.5e-17 Score=153.10 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=105.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 167 (512)
.+|+++|..|+|||||+.+++.+.+...+.+++ +.... ..+..++ ..++||||+|+++|..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~--------------~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDNYA---VTVMIGGEPYTLGLFDTAGQEDYDR 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--------------eeeeE---EEEEECCEEEEEEEEECCCccchhh
Confidence 579999999999999999999877654444433 11111 1223333 5788999999999988
Q ss_pred HHHHHHHhccEEEEEEeCCCCCc-hhHH-HHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhh-------------hHH
Q 010392 168 EVERILNMVEGVLLVVDSVEGPM-PQTR-FVLKKALEF--GHAVVVVVNKIDRPSARPDYVINS-------------TFE 230 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~-~~~~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~-------------~~~ 230 (512)
.+..+++.+|++|+|+|.++... .... .|+..+... ++|+++|+||+|+.... ...+. ..+
T Consensus 65 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~~~ 142 (175)
T cd01874 65 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETGEK 142 (175)
T ss_pred hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHHHH
Confidence 88889999999999999877432 2333 355555443 57999999999986431 11111 111
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
...+. ..++++++||++|. |+.++++.+.+.
T Consensus 143 ~a~~~------~~~~~~e~SA~tg~----------~v~~~f~~~~~~ 173 (175)
T cd01874 143 LARDL------KAVKYVECSALTQK----------GLKNVFDEAILA 173 (175)
T ss_pred HHHHh------CCcEEEEecCCCCC----------CHHHHHHHHHHH
Confidence 11111 12579999999999 999999988763
No 185
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.76 E-value=1.7e-17 Score=150.63 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=106.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc--CCCcCccceeeeeeccchhhhhcceeEEeeeeEEE-ECCeeEEEEeCCCCCCChH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA--KVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-YNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~--~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~~~~i~liDtPG~~~~~~ 167 (512)
+|+++|.+|+|||||+++|.... +...+..+. |..+......+. .....+.+|||||+..+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTT--------------GCDFVVKEVPVDTDNTVELFIFDSAGQELYSD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCce--------------EEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH
Confidence 79999999999999999998642 222222222 323222222222 2346899999999999988
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
.+..++..+|++++|+|.++.. ......|+..+... +.|+++|+||+|+..... ......+.+... ..+
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~------~~~ 139 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAE--VTDAQAQAFAQA------NQL 139 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC--CCHHHHHHHHHH------cCC
Confidence 8899999999999999987642 23344566665554 589999999999864321 111111111111 124
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+++++||++|. |+.++++.+.+.+
T Consensus 140 ~~~~~Sa~~~~----------gi~~l~~~l~~~~ 163 (164)
T cd04101 140 KFFKTSALRGV----------GYEEPFESLARAF 163 (164)
T ss_pred eEEEEeCCCCC----------ChHHHHHHHHHHh
Confidence 68999999999 9999999988754
No 186
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.76 E-value=1.1e-17 Score=155.91 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=110.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
++|+++|..|+|||||+++|+...+.....+++. .... ....+......++||||||+++|...+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~--------------~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVF--------------ENYV-HDIFVDGLHIELSLWDTAGQEEFDRLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcce--------------eeeE-EEEEECCEEEEEEEEECCCChhccccc
Confidence 4799999999999999999998766543333321 1110 111122223578999999999998888
Q ss_pred HHHHHhccEEEEEEeCCCCCchh-H-HHHHHHHHHc--CCcEEEEEeccCCCCCCchh-h----------HhhhHHHHHH
Q 010392 170 ERILNMVEGVLLVVDSVEGPMPQ-T-RFVLKKALEF--GHAVVVVVNKIDRPSARPDY-V----------INSTFELFIE 234 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~~~-~-~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~-~----------~~~~~~~~~~ 234 (512)
..++..+|++++|+|.++...-+ . ..|+..+... +.|+++|+||+|+...+... . .++..+....
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR 145 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 88889999999999987743222 2 2456666553 68999999999997543111 0 1111111111
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
. ..++++++||++|. |++++|+++.+.+..|.
T Consensus 146 ~------~~~~~~e~SAk~~~----------~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 146 I------NALRYLECSAKLNR----------GVNEAFTEAARVALNVR 177 (189)
T ss_pred c------CCCEEEEccCCcCC----------CHHHHHHHHHHHHhccc
Confidence 1 12568999999999 99999999998876554
No 187
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.76 E-value=8.5e-18 Score=157.75 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=107.9
Q ss_pred EeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHHH
Q 010392 95 IAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILN 174 (512)
Q Consensus 95 vG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~ 174 (512)
+|..|+|||||+++++...+...+.+++ |.+.......+.....++.||||+|+++|...+..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Ti--------------g~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATL--------------GVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCce--------------eEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhc
Confidence 6999999999999999766543333333 33333332233334568999999999999999999999
Q ss_pred hccEEEEEEeCCCCCc-hhHHHHHHHHHH--cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeecc
Q 010392 175 MVEGVLLVVDSVEGPM-PQTRFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASG 251 (512)
Q Consensus 175 ~~d~~llvida~~g~~-~~~~~~l~~~~~--~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa 251 (512)
.+|++|+|+|.++... .....|+..+.+ .++|+++|+||+|+...... .+. .+... ...++++++||
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~--~~~-~~~~~-------~~~~~~~e~SA 136 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVK--AKS-ITFHR-------KKNLQYYDISA 136 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCC--HHH-HHHHH-------HcCCEEEEEeC
Confidence 9999999999888543 334466666665 36899999999998542211 111 11111 12467999999
Q ss_pred ccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 252 IQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 252 ~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++|. |+.++|++|.+.+.
T Consensus 137 k~~~----------~v~~~F~~l~~~i~ 154 (200)
T smart00176 137 KSNY----------NFEKPFLWLARKLI 154 (200)
T ss_pred CCCC----------CHHHHHHHHHHHHH
Confidence 9999 89999999987653
No 188
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.76 E-value=1.6e-17 Score=150.38 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=107.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|.+|+|||||+++|+.........++.. ... .....+......+.+|||||+.++....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA--------------DSY-RKKVVLDGEDVQLNILDTAGQEDYAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch--------------hhE-EEEEEECCEEEEEEEEECCChhhhhHHH
Confidence 3799999999999999999998765543332221 001 1111222334678999999999999999
Q ss_pred HHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 170 ERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
..+++.+|++++|+|..+.. ......++..+.. .++|+++|+||+|+.... .....+........ .+
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~-~~~~~~~~~~~~~~-------~~ 137 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR-QVSSEEAANLARQW-------GV 137 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc-ccCHHHHHHHHHHh-------CC
Confidence 99999999999999977632 2223344444433 468999999999986521 11122222332222 34
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
|++++||++|. |++++++.+.+.+
T Consensus 138 ~~~~~Sa~~~~----------gi~~l~~~l~~~~ 161 (164)
T cd04139 138 PYVETSAKTRQ----------NVEKAFYDLVREI 161 (164)
T ss_pred eEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 79999999999 9999999988654
No 189
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.76 E-value=2.1e-17 Score=153.18 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=107.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|+.|+|||||++++....... ..++. |.. ...+...+..+.+|||||+..+...
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~--------------~~~----~~~~~~~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTI--------------GFN----VETVEYKNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCcc--------------ccc----eEEEEECCEEEEEEECCCCHhHHHH
Confidence 4689999999999999999997654431 11121 222 2245567889999999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC-cccc
Q 010392 169 VERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-DEQC 242 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~ 242 (512)
+..+++.+|++|+|+|+++. .......++..+.. .+.|+++|+||.|+.+.... +++...+ +.. ....
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l---~~~~~~~~ 151 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKL---GLHSVRQR 151 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHh---CCCcccCC
Confidence 99999999999999998762 22333444443322 25799999999998653211 2232222 211 1122
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+++++++|.+.+
T Consensus 152 ~~~~~~~Sa~tg~----------gv~e~~~~l~~~i 177 (182)
T PTZ00133 152 NWYIQGCCATTAQ----------GLYEGLDWLSANI 177 (182)
T ss_pred cEEEEeeeCCCCC----------CHHHHHHHHHHHH
Confidence 3567789999999 9999999988754
No 190
>PLN03118 Rab family protein; Provisional
Probab=99.76 E-value=2.6e-17 Score=156.32 Aligned_cols=160 Identities=21% Similarity=0.186 Sum_probs=108.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|++|+|||||+++|+...... ..++. |.+.......+......+.||||||+.+|..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~--------------~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTI--------------GVDFKIKQLTVGGKRLKLTIWDTAGQERFRT 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCc--------------eeEEEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 45789999999999999999999765421 11111 2222222222222235789999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCCch-hHHHHH-HHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMP-QTRFVL-KKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~-~~~~~l-~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
.+..+++.+|++|+|+|+++...- ....+| ..+.. .+.|+++|+||+|+...... ..++...+....
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i-~~~~~~~~~~~~------ 150 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV-SREEGMALAKEH------ 150 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc-CHHHHHHHHHHc------
Confidence 999999999999999998874322 222333 23322 25689999999998753211 122222222221
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.++++++||++|. |++++++.|.+.+..
T Consensus 151 -~~~~~e~SAk~~~----------~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 151 -GCLFLECSAKTRE----------NVEQCFEELALKIME 178 (211)
T ss_pred -CCEEEEEeCCCCC----------CHHHHHHHHHHHHHh
Confidence 3468999999999 999999999977643
No 191
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.76 E-value=1.5e-17 Score=155.38 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=110.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|..|+|||||+.+++.+.+...+.+++ +.... ....+......++||||+|++.|...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~--------------~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV--------------FDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCce--------------EeeeE-EEEEECCEEEEEEEEECCCchhhhhh
Confidence 3689999999999999999999887654444443 11111 11122223467899999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCC-chhHH-HHHHHHHH--cCCcEEEEEeccCCCCCCc-hhhH----------hhhHHHHH
Q 010392 169 VERILNMVEGVLLVVDSVEGP-MPQTR-FVLKKALE--FGHAVVVVVNKIDRPSARP-DYVI----------NSTFELFI 233 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~-~~~~~-~~l~~~~~--~~~p~ivviNK~Dl~~~~~-~~~~----------~~~~~~~~ 233 (512)
+..+++.+|++|+|+|.++.. ..... .|+..+.. .++|+++|+||.|+.+... .+.+ ++..++..
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 147 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK 147 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 999999999999999987743 23333 34444443 3689999999999964321 0000 11111111
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
.. ..++++++||++|. |+.++|+.+.+.+-.|.
T Consensus 148 ~~------~~~~~~e~SAk~g~----------~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 148 QI------HAVKYLECSALNQD----------GVKEVFAEAVRAVLNPT 180 (191)
T ss_pred Hc------CCcEEEEeCCCCCC----------CHHHHHHHHHHHHhccc
Confidence 11 12478999999999 99999999998775553
No 192
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=1.5e-17 Score=154.93 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=108.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|..|+|||||+++|+...+...+.+++ |.+.......+......+.+|||||+.+|...+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTI--------------GVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------------eeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence 379999999999999999999776644333332 222222222222234578899999999999899
Q ss_pred HHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 170 ERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
..+++.+|++++|+|+++.. ......|+..+... +.|+++|+||+|+...... ...+....... ..++
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v-~~~~~~~~~~~-------~~~~ 138 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVV-DSNIAKSFCDS-------LNIP 138 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccC-CHHHHHHHHHH-------cCCe
Confidence 99999999999999987642 23334455555543 4789999999998743211 11111222111 1347
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++++||++|. |+.++++.+.+.+.
T Consensus 139 ~~evSa~~~~----------~i~~~f~~l~~~~~ 162 (188)
T cd04125 139 FFETSAKQSI----------NVEEAFILLVKLII 162 (188)
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 9999999999 88888888877653
No 193
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.75 E-value=1.7e-17 Score=156.01 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=107.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGGE 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~ 168 (512)
+|+++|+.|+|||||+++|+..........+. .......+.+.+ ..++||||||+.+|...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-----------------EEMHRKEYEVGGVSLTLDILDTSGSYSFPAM 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch-----------------hhheeEEEEECCEEEEEEEEECCCchhhhHH
Confidence 58999999999999999999876543322221 111122334444 57899999999999888
Q ss_pred HHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
...++..+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.........++..+.+. . ...
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~-~-----~~~ 137 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE-L-----DWN 137 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH-h-----hcC
Confidence 8889999999999999887432 223334333333 4689999999999865311111112222211 0 113
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.+++++||++|. |+.++++++.+.+..+
T Consensus 138 ~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~~ 165 (198)
T cd04147 138 CGFVETSAKDNE----------NVLEVFKELLRQANLP 165 (198)
T ss_pred CcEEEecCCCCC----------CHHHHHHHHHHHhhcc
Confidence 468999999999 9999999999887543
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=3.1e-17 Score=172.93 Aligned_cols=154 Identities=23% Similarity=0.367 Sum_probs=117.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC-----
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD----- 164 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~----- 164 (512)
++|+++|++|+|||||+|+|++........ ..|+|.+.....+.+.+..+.+|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~---------------~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD---------------TPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGF 66 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC---------------CCCCcccceEEEEEECCcEEEEEECCCCCCcchhH
Confidence 579999999999999999998765422111 125666667777888889999999999987
Q ss_pred ---ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 165 ---FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 165 ---~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
+...+..++..+|++|+|+|+.++......+....++..++|+++|+||+|+... + ....+. ..++..
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~--~---~~~~~~-~~lg~~--- 137 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE--E---ADAYEF-YSLGLG--- 137 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc--h---hhHHHH-HhcCCC---
Confidence 2333556788999999999999988777777788888889999999999996531 1 112222 222221
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.++++||++|. |+.++++.+....+.
T Consensus 138 ---~~~~iSa~~g~----------gv~~l~~~I~~~~~~ 163 (435)
T PRK00093 138 ---EPYPISAEHGR----------GIGDLLDAILEELPE 163 (435)
T ss_pred ---CCEEEEeeCCC----------CHHHHHHHHHhhCCc
Confidence 26899999999 999999999885544
No 195
>PRK00089 era GTPase Era; Reviewed
Probab=99.75 E-value=3.5e-17 Score=163.28 Aligned_cols=162 Identities=26% Similarity=0.327 Sum_probs=112.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh-
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~- 166 (512)
+...|+++|.+|+|||||+|+|++.......... ++|..........++.++.+|||||+.+..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~---------------~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR 68 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCC---------------CcccccEEEEEEcCCceEEEEECCCCCCchh
Confidence 3567999999999999999999987543322111 112222222233355789999999986543
Q ss_pred -------HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 167 -------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 167 -------~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
.....++..+|++++|+|+.++.......++..+...+.|+++|+||+|+.... .. ..+..+.+.....
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~-~~-l~~~~~~l~~~~~-- 144 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDK-EE-LLPLLEELSELMD-- 144 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCH-HH-HHHHHHHHHhhCC--
Confidence 334456788999999999998766667777777777789999999999997321 12 2222222222111
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
..+++++||++|. |++.|++.+.+.+|..
T Consensus 145 ---~~~i~~iSA~~~~----------gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 145 ---FAEIVPISALKGD----------NVDELLDVIAKYLPEG 173 (292)
T ss_pred ---CCeEEEecCCCCC----------CHHHHHHHHHHhCCCC
Confidence 2358999999998 9999999999998653
No 196
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=2.6e-17 Score=156.22 Aligned_cols=157 Identities=21% Similarity=0.244 Sum_probs=108.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE---CCeeEEEEeCCCCCCC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY---NDTKINIIDTPGHSDF 165 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---~~~~i~liDtPG~~~~ 165 (512)
..+|+++|..|+|||||+++|+.........+++ |.... ...+.+ ....+++|||||+..|
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti--------------~~d~~--~~~i~~~~~~~~~l~i~Dt~G~~~~ 65 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTV--------------GVDFF--SRLIEIEPGVRIKLQLWDTAGQERF 65 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcee--------------ceEEE--EEEEEECCCCEEEEEEEeCCcchhH
Confidence 3689999999999999999999876544333322 22221 222222 2357899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
......+++.+|++++|+|.++. .......|+..+... ..|+++|+||+|+.... ....++.......
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~-~v~~~~~~~~~~~------ 138 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR-QVTREEAEKLAKD------ 138 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc-ccCHHHHHHHHHH------
Confidence 98888999999999999998873 233344555555433 45789999999986532 1112222222222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
..++++++||++|. |+.++++.|.+.+.
T Consensus 139 -~~~~~~e~Sak~g~----------~v~e~f~~l~~~~~ 166 (211)
T cd04111 139 -LGMKYIETSARTGD----------NVEEAFELLTQEIY 166 (211)
T ss_pred -hCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 13579999999999 89999998887653
No 197
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.75 E-value=2.4e-17 Score=151.65 Aligned_cols=157 Identities=16% Similarity=0.176 Sum_probs=105.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|..|+|||||+.+++...+...+.+++.. .. .....+......+.||||||+.+|...+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~--------------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD--------------NY-SANVMVDGKPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee--------------ee-EEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 47999999999999999999987665444333211 01 1111222233578899999999998888
Q ss_pred HHHHHhccEEEEEEeCCCCCc-hhHH-HHHHHHHHc--CCcEEEEEeccCCCCCCch-----------hhHhhhHHHHHH
Q 010392 170 ERILNMVEGVLLVVDSVEGPM-PQTR-FVLKKALEF--GHAVVVVVNKIDRPSARPD-----------YVINSTFELFIE 234 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~-~~~~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~~-----------~~~~~~~~~~~~ 234 (512)
..+++.+|++|+|+|.++... .... .|+..+... +.|+++|+||+|+...... ...++..+...+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 146 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 146 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 889999999999999887432 2222 344544433 5899999999998643210 001111122211
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
++ ..+++++||++|. |++++++.+.+.
T Consensus 147 ~~------~~~~~e~Sa~~~~----------~i~~~f~~l~~~ 173 (174)
T cd01871 147 IG------AVKYLECSALTQK----------GLKTVFDEAIRA 173 (174)
T ss_pred cC------CcEEEEecccccC----------CHHHHHHHHHHh
Confidence 11 1368999999999 999999988764
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=3.2e-17 Score=181.76 Aligned_cols=158 Identities=22% Similarity=0.396 Sum_probs=122.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC-
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD- 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~- 164 (512)
+...++|+|+|++|+|||||+|+|++........ ..|+|.+.......|.+..+++|||||+..
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~---------------~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~ 336 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVED---------------TPGVTRDRVSYDAEWAGTDFKLVDTGGWEAD 336 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCeeEEEEEEEEEECCEEEEEEeCCCcCCC
Confidence 3346789999999999999999999764322211 227777777778889999999999999864
Q ss_pred -------ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC
Q 010392 165 -------FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (512)
Q Consensus 165 -------~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~ 237 (512)
+...+..++..+|++|+|+|+.++.......++..++..++|+++|+||+|+.... . ...+ +..++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~--~---~~~~-~~~lg~ 410 (712)
T PRK09518 337 VEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE--Y---DAAE-FWKLGL 410 (712)
T ss_pred CccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch--h---hHHH-HHHcCC
Confidence 34455667899999999999999888888888888888999999999999985421 1 1112 222222
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
. .++++||++|. |+.+|++.|.+.++.
T Consensus 411 ~------~~~~iSA~~g~----------GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 411 G------EPYPISAMHGR----------GVGDLLDEALDSLKV 437 (712)
T ss_pred C------CeEEEECCCCC----------CchHHHHHHHHhccc
Confidence 1 24789999999 999999999998865
No 199
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.75 E-value=2.7e-17 Score=150.20 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=106.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~~~~ 167 (512)
.+|+++|.+|+|||||+++|....+.....+++ +... ...+.++ ...+.+|||||+.+|..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTI--------------EDSY---RKQVEIDGRQCDLEILDTAGTEQFTA 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc--------------hheE---EEEEEECCEEEEEEEEeCCCcccchh
Confidence 479999999999999999999776543333222 1111 1122233 35789999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHH----HcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~----~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..+++.+|++++|+|..+.. ......|...+. ..++|+++++||+|+...+.. ..++........ .
T Consensus 65 ~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~-~~~~~~~~~~~~------~ 137 (168)
T cd04177 65 MRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQV-SREDGVSLSQQW------G 137 (168)
T ss_pred hhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCcc-CHHHHHHHHHHc------C
Confidence 9999999999999999987642 222333333333 236899999999998654311 112222222111 1
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.+|++++||++|. |+.++++++...+.
T Consensus 138 ~~~~~~~SA~~~~----------~i~~~f~~i~~~~~ 164 (168)
T cd04177 138 NVPFYETSARKRT----------NVDEVFIDLVRQII 164 (168)
T ss_pred CceEEEeeCCCCC----------CHHHHHHHHHHHHh
Confidence 2579999999999 99999999987653
No 200
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.1e-18 Score=152.36 Aligned_cols=150 Identities=19% Similarity=0.234 Sum_probs=120.7
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
..++.++|+++|++++|||-|+.++..+.+......++ |+.+......+..+..+.+||||+|+++
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTI--------------Gvef~t~t~~vd~k~vkaqIWDTAGQER 75 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTI--------------GVEFATRTVNVDGKTVKAQIWDTAGQER 75 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccce--------------eEEEEeeceeecCcEEEEeeecccchhh
Confidence 35678999999999999999999999999988888777 8888888878888888999999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|+..+..+++.+-++|+|+|.+. ........|+..++.+ ++++++|+||+||...+ .+-.+--..|.+.
T Consensus 76 yrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lr--aV~te~~k~~Ae~----- 148 (222)
T KOG0087|consen 76 YRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLR--AVPTEDGKAFAEK----- 148 (222)
T ss_pred hccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhcc--ccchhhhHhHHHh-----
Confidence 99999999999999999999865 3455677889999887 57899999999997532 1211222222211
Q ss_pred ccccceeeeccccCcc
Q 010392 241 QCDFQAIYASGIQGKA 256 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~ 256 (512)
-...++++||+.+.|
T Consensus 149 -~~l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 149 -EGLFFLETSALDATN 163 (222)
T ss_pred -cCceEEEeccccccc
Confidence 123589999999993
No 201
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.75 E-value=2.5e-17 Score=159.60 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=110.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+++|..|+|||||+++++...+...+.+++. ........+......++||||+|+.+|.....
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~---------------d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE---------------DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh---------------HhEEEEEEECCEEEEEEEEECCCChhhhHHHH
Confidence 699999999999999999998766543333320 11111122222236788999999999988877
Q ss_pred HHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH------------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC
Q 010392 171 RILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE------------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~------------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~ 237 (512)
.++..+|++|+|+|.++.. ......|+..+.. .++|+++|+||+|+...+ ....+++.+.+...
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~-~v~~~ei~~~~~~~-- 143 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR-EVQRDEVEQLVGGD-- 143 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc-ccCHHHHHHHHHhc--
Confidence 7889999999999988742 2333445444433 257999999999986422 12233444433211
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
..++++++||++|. |++++++.|....-.|.
T Consensus 144 ----~~~~~~evSAktg~----------gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 144 ----ENCAYFEVSAKKNS----------NLDEMFRALFSLAKLPN 174 (247)
T ss_pred ----CCCEEEEEeCCCCC----------CHHHHHHHHHHHhcccc
Confidence 13468999999999 99999999998775554
No 202
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.75 E-value=2.5e-17 Score=148.85 Aligned_cols=153 Identities=22% Similarity=0.296 Sum_probs=103.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCCChHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~~ 169 (512)
+|+++|.+|+|||||+++|........ .++. +.++ ..+.. ....+.+|||||+..+...+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~--------------~~~~----~~~~~~~~~~l~i~D~~G~~~~~~~~ 61 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTV--------------GFNV----EMLQLEKHLSLTVWDVGGQEKMRTVW 61 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCcc--------------Ccce----EEEEeCCceEEEEEECCCCHhHHHHH
Confidence 489999999999999999997754321 1111 2222 12222 34689999999999998888
Q ss_pred HHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 170 ERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
..++..+|++++|+|+.+.. ......++..+.. .+.|+++|+||+|+..... .+++...+..... .....+
T Consensus 62 ~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~-~~~~~~ 137 (160)
T cd04156 62 KCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKY-CSDRDW 137 (160)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcCCccc-CCCCcE
Confidence 88999999999999988753 2233334433322 4789999999999864321 1223222210001 111245
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
+++++||++|. |++++++.|.+
T Consensus 138 ~~~~~Sa~~~~----------gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTGE----------GLAEAFRKLAS 159 (160)
T ss_pred EEEecccccCC----------ChHHHHHHHhc
Confidence 78999999999 99999998864
No 203
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=2.8e-17 Score=157.25 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=109.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|+.|+|||||+.+|+...+...+.+++ +..... ...+......+.||||+|+++|..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi--------------~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~ 76 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FENYTA-GLETEEQRVELSLWDTSGSPYYDN 76 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCce--------------eeeeEE-EEEECCEEEEEEEEeCCCchhhHH
Confidence 35689999999999999999999887765554443 111111 112222345789999999999998
Q ss_pred HHHHHHHhccEEEEEEeCCCCCch-h-HHHHHHHHHHc--CCcEEEEEeccCCCCCC-----------chhhHhhhHHHH
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMP-Q-TRFVLKKALEF--GHAVVVVVNKIDRPSAR-----------PDYVINSTFELF 232 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~-~-~~~~l~~~~~~--~~p~ivviNK~Dl~~~~-----------~~~~~~~~~~~~ 232 (512)
....+++.+|++|+|+|.++...- . ...|+..+... +.|+++|+||+|+.... .....++..++.
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a 156 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALA 156 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHH
Confidence 888999999999999998874332 2 24566666643 57999999999985321 011122333333
Q ss_pred HHhcCCcccccc-ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 233 IELNATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 233 ~~~~~~~~~~~~-pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+++ .+ +++++||++|.+ +++++|+.+...+
T Consensus 157 ~~~-------~~~~~~EtSAktg~~---------~V~e~F~~~~~~~ 187 (232)
T cd04174 157 KQL-------GAEVYLECSAFTSEK---------SIHSIFRSASLLC 187 (232)
T ss_pred HHc-------CCCEEEEccCCcCCc---------CHHHHHHHHHHHH
Confidence 333 23 489999999962 5888888876543
No 204
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.74 E-value=2e-17 Score=151.81 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=104.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|++|+|||||+++|+...+...+.++.. ........+......+.+|||||+.+|....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~---------------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF---------------DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee---------------eeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 3799999999999999999998766433333321 0001111122223467899999999998888
Q ss_pred HHHHHhccEEEEEEeCCCCCc-hhH-HHHHHHHHH--cCCcEEEEEeccCCCCCCchh-----------hHhhhHHHHHH
Q 010392 170 ERILNMVEGVLLVVDSVEGPM-PQT-RFVLKKALE--FGHAVVVVVNKIDRPSARPDY-----------VINSTFELFIE 234 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~-~~~-~~~l~~~~~--~~~p~ivviNK~Dl~~~~~~~-----------~~~~~~~~~~~ 234 (512)
..+++.+|++++|+|..+... ... ..|+..+.. .++|+++|+||+|+.+..... ..++.......
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKE 145 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 888899999999999877422 222 234444443 368999999999986432110 01112222222
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++ ..+++++||++|. |++++++.+.+.+
T Consensus 146 ~~------~~~~~e~Sa~~~~----------gi~~~f~~~~~~~ 173 (174)
T cd04135 146 IG------AHCYVECSALTQK----------GLKTVFDEAILAI 173 (174)
T ss_pred cC------CCEEEEecCCcCC----------CHHHHHHHHHHHh
Confidence 22 1258999999999 9999999987653
No 205
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=3e-17 Score=151.48 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=107.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|..|+|||||+++++...+...+.+++ +.... ....+......+.||||+|++.|....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~--------------~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTV--------------FENYT-ASFEIDEQRIELSLWDTSGSPYYDNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCce--------------EEEEE-EEEEECCEEEEEEEEECCCchhhhhcc
Confidence 479999999999999999999887654444443 11111 111222234578999999999998888
Q ss_pred HHHHHhccEEEEEEeCCCCC-chhH-HHHHHHHHHc--CCcEEEEEeccCCCCCC----------c-hhhHhhhHHHHHH
Q 010392 170 ERILNMVEGVLLVVDSVEGP-MPQT-RFVLKKALEF--GHAVVVVVNKIDRPSAR----------P-DYVINSTFELFIE 234 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~-~~~~-~~~l~~~~~~--~~p~ivviNK~Dl~~~~----------~-~~~~~~~~~~~~~ 234 (512)
..+++.+|++|+|+|.++.. .... ..|+..+++. +.|+++|+||+|+.... . .-..++..++..+
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~ 146 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQ 146 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 88999999999999987643 3332 4666666554 57999999999985420 0 0111222222222
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.+. .+++++||++|.+ ++.++++.+.+.
T Consensus 147 ~~~------~~~~E~SA~~~~~---------~v~~~F~~~~~~ 174 (178)
T cd04131 147 LGA------EIYLECSAFTSEK---------SVRDIFHVATMA 174 (178)
T ss_pred hCC------CEEEECccCcCCc---------CHHHHHHHHHHH
Confidence 221 2689999999982 389999888763
No 206
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.9e-17 Score=140.46 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=125.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+...+|+++|..|+|||+|+.++....+.+....++ |+.+-.....+.....+++||||.|+++|
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgati--------------gvdfmiktvev~gekiklqiwdtagqerf 69 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI--------------GVDFMIKTVEVNGEKIKLQIWDTAGQERF 69 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee--------------eeeEEEEEEEECCeEEEEEEeeccchHHH
Confidence 4567899999999999999999999988877766665 66676777777777889999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
+..+.++++.++++|+|+|.+.. .+.-.-+|+..+.++ ++--|+|+||+|+.+. .++-.++-+.|.+..
T Consensus 70 rsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr--revp~qigeefs~~q----- 142 (213)
T KOG0095|consen 70 RSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR--REVPQQIGEEFSEAQ----- 142 (213)
T ss_pred HHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh--hhhhHHHHHHHHHhh-----
Confidence 99999999999999999997763 444455777777765 3446889999998653 344455555554321
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+.-++.+||+... +++.|+..+.-.+
T Consensus 143 -dmyfletsakea~----------nve~lf~~~a~rl 168 (213)
T KOG0095|consen 143 -DMYFLETSAKEAD----------NVEKLFLDLACRL 168 (213)
T ss_pred -hhhhhhhcccchh----------hHHHHHHHHHHHH
Confidence 2237899999998 7888887776544
No 207
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.74 E-value=3.6e-17 Score=152.04 Aligned_cols=157 Identities=14% Similarity=0.084 Sum_probs=105.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE---CCeeEEEEeCCCCCCCh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY---NDTKINIIDTPGHSDFG 166 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---~~~~i~liDtPG~~~~~ 166 (512)
.+|+++|..|+|||||+++|+...+...+.+++. .... ..+.. ....+.||||||+++|.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~--------------~~~~---~~i~~~~~~~~~l~i~Dt~G~~~~~ 63 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVF--------------ENYV---TNIQGPNGKIIELALWDTAGQEEYD 63 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeee--------------eeeE---EEEEecCCcEEEEEEEECCCchhHH
Confidence 3799999999999999999998766543333321 1111 11222 23578999999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCc-hhHH-HHHHHHHH--cCCcEEEEEeccCCCCCCch---hhHhhhHHHHHHhcCCc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPM-PQTR-FVLKKALE--FGHAVVVVVNKIDRPSARPD---YVINSTFELFIELNATD 239 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~-~~~~-~~l~~~~~--~~~p~ivviNK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 239 (512)
.....++..+|++++|+|+++... .... .|+..+.. .++|+++|+||+|+...... ....+..+.....+.
T Consensus 64 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-- 141 (187)
T cd04132 64 RLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-- 141 (187)
T ss_pred HHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC--
Confidence 888888999999999999887432 2222 34444443 25899999999998643211 112222232222211
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.+++++||++|. |+.++++.+.+.+.
T Consensus 142 ----~~~~e~Sa~~~~----------~v~~~f~~l~~~~~ 167 (187)
T cd04132 142 ----FAYLECSAKTME----------NVEEVFDTAIEEAL 167 (187)
T ss_pred ----cEEEEccCCCCC----------CHHHHHHHHHHHHH
Confidence 268999999999 89999988887653
No 208
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=5.3e-17 Score=144.10 Aligned_cols=166 Identities=22% Similarity=0.230 Sum_probs=130.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-eeEEEEeCCCCCCCh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSDFG 166 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~i~liDtPG~~~~~ 166 (512)
...+|+|+|+.++||||++.+++............ ......+|.+|+......+.+.+ ..+.|+|||||.+|.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~------~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS------SVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK 82 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeecccc------ccccccccceeEeecccceEEcCcceEEEecCCCcHHHH
Confidence 45689999999999999999999876533211110 00011145578888888888776 899999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcC-CcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~-~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
..|.-..+.++++++++|++.+.....++.+..+...+ +|++|++||.|+.++...+.+.++.+.- ...+|
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~--------~~~~~ 154 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLE--------LLSVP 154 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhc--------cCCCc
Confidence 99999999999999999999877667778888888887 8999999999999887665554444321 13568
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
+|..+|..++ +..+.|+.+...
T Consensus 155 vi~~~a~e~~----------~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGE----------GARDQLDVLLLK 176 (187)
T ss_pred eeeeecccch----------hHHHHHHHHHhh
Confidence 9999999998 888888887766
No 209
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.74 E-value=2.9e-17 Score=149.96 Aligned_cols=156 Identities=14% Similarity=0.133 Sum_probs=104.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|..|+|||||+++|+.........++.. ...............+.+|||||+.++....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF---------------DNYSATVTVDGKQVNLGLWDTAGQEEYDRLR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee---------------eeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 3799999999999999999998766333332221 0111111222334578999999999887767
Q ss_pred HHHHHhccEEEEEEeCCCCCc--hhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchh----------hHhhhHHHHHHh
Q 010392 170 ERILNMVEGVLLVVDSVEGPM--PQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDY----------VINSTFELFIEL 235 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~--~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~----------~~~~~~~~~~~~ 235 (512)
...++.+|++++|+|+++... .....|+..+... ++|+++|+||+|+...+... ..++..+.....
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 145 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI 145 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHh
Confidence 777888999999999887322 2223455555544 48999999999997554221 112222222222
Q ss_pred cCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 236 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
+ ..+++++||++|. |+.++++.+.+
T Consensus 146 ~------~~~~~~~Sa~~~~----------gi~~l~~~i~~ 170 (171)
T cd00157 146 G------AIGYMECSALTQE----------GVKEVFEEAIR 170 (171)
T ss_pred C------CeEEEEeecCCCC----------CHHHHHHHHhh
Confidence 1 1269999999999 99999998875
No 210
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.74 E-value=4.6e-17 Score=146.68 Aligned_cols=153 Identities=19% Similarity=0.242 Sum_probs=107.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCCChHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~~~~~ 168 (512)
+|+++|++|+|||||+++|+.........++. + ......+... ...+.+||+||+.++...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTI--------------E---DSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCCh--------------h---HeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 58999999999999999999765433332221 0 1111222333 467899999999999998
Q ss_pred HHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
....+..+|++++|+|..+.. ......++..+.. .+.|+++|+||+|+.... ....+++........
T Consensus 64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~------- 135 (160)
T cd00876 64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER-QVSKEEGKALAKEWG------- 135 (160)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc-eecHHHHHHHHHHcC-------
Confidence 999999999999999987632 2334445544443 368999999999987532 122233444333222
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+++++||++|. |+.++++.|.+.+
T Consensus 136 ~~~~~~S~~~~~----------~i~~l~~~l~~~i 160 (160)
T cd00876 136 CPFIETSAKDNI----------NIDEVFKLLVREI 160 (160)
T ss_pred CcEEEeccCCCC----------CHHHHHHHHHhhC
Confidence 479999999998 9999999998753
No 211
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.74 E-value=2.8e-17 Score=150.61 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=107.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.....+|+++|++|+|||||+++|.+...... .++ .|.+ ...+.+.+..+.+|||||+..+
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-~~t--------------~g~~----~~~i~~~~~~~~~~D~~G~~~~ 71 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISHI-TPT--------------QGFN----IKTVQSDGFKLNVWDIGGQRAI 71 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCccc-CCC--------------CCcc----eEEEEECCEEEEEEECCCCHHH
Confidence 34467899999999999999999987533211 111 1222 2345566889999999999998
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHH----HHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC-c
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKA----LEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-D 239 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~----~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~ 239 (512)
...+..++..+|++++|+|+.+.. ......++..+ ...++|+++++||+|+..... .+++.+.+ +.. .
T Consensus 72 ~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~i~~~l---~~~~~ 145 (173)
T cd04155 72 RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---AEEIAEAL---NLHDL 145 (173)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC---HHHHHHHc---CCccc
Confidence 888888999999999999987632 22233333333 234689999999999865321 22233322 111 1
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
....++++++||++|. |+++++++|.+
T Consensus 146 ~~~~~~~~~~Sa~~~~----------gi~~~~~~l~~ 172 (173)
T cd04155 146 RDRTWHIQACSAKTGE----------GLQEGMNWVCK 172 (173)
T ss_pred CCCeEEEEEeECCCCC----------CHHHHHHHHhc
Confidence 1123568899999999 99999999864
No 212
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.73 E-value=3.8e-17 Score=146.53 Aligned_cols=151 Identities=22% Similarity=0.293 Sum_probs=106.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHH
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVER 171 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~ 171 (512)
|+++|++|+|||||+++|.+..+.....+++ + .....+..++..+.+|||||+..|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTV--------------G----FNMRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCC--------------C----cceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 7999999999999999998876543333222 2 222234556678999999999999999999
Q ss_pred HHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC-ccccccc
Q 010392 172 ILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-DEQCDFQ 245 (512)
Q Consensus 172 ~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p 245 (512)
++..+|++++|+|+.+. .......++..+.. .++|+++|+||+|+..... .+++.+.+ ... .....++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~---~~~~~~~~~~~ 137 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS---VDELIEQM---NLKSITDREVS 137 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC---HHHHHHHh---CcccccCCceE
Confidence 99999999999998863 22333444444433 4689999999999865321 12222221 111 1122467
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
++++||++|. |+.+++++|.+
T Consensus 138 ~~~~Sa~~~~----------gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEKT----------NIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccCC----------ChHHHHHHHhh
Confidence 8999999999 99999998864
No 213
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=1.6e-16 Score=143.54 Aligned_cols=157 Identities=25% Similarity=0.270 Sum_probs=108.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH-
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG- 167 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~- 167 (512)
..+|+++|.+|+|||||+++|++.......... ..+.......+...+..+.+|||||+.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 67 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK 67 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC---------------CceeceEEEEEEcCCeEEEEEECCCCCcchHH
Confidence 467999999999999999999876432211111 1222222233445567899999999876432
Q ss_pred -------HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 168 -------EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 168 -------~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
.....+..+|++++|+|+.+........++..+...+.|+++|+||+|+... .....+....+....
T Consensus 68 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~---- 141 (168)
T cd04163 68 LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD--KEDLLPLLEKLKELG---- 141 (168)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc--HHHHHHHHHHHHhcc----
Confidence 3345678899999999999875556666677777778999999999998632 122233333332211
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
...+++++|++++. |++++++.|.+.
T Consensus 142 -~~~~~~~~s~~~~~----------~~~~l~~~l~~~ 167 (168)
T cd04163 142 -PFAEIFPISALKGE----------NVDELLEEIVKY 167 (168)
T ss_pred -CCCceEEEEeccCC----------ChHHHHHHHHhh
Confidence 13468999999999 999999988765
No 214
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.73 E-value=5.6e-17 Score=153.06 Aligned_cols=153 Identities=22% Similarity=0.218 Sum_probs=101.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe-eEEEEeCCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-KINIIDTPGHSDF 165 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~-~i~liDtPG~~~~ 165 (512)
...++|+|+|++|||||||+++|++......... +.|+......+.+.+. .+.+|||||+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQL----------------FATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCcc----------------ceeccceeEEEEecCCceEEEeCCCccccC
Confidence 4568999999999999999999998653221111 2233344444555554 8999999998542
Q ss_pred -hHH-------HHHHHHhccEEEEEEeCCCCCchh-HHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHH
Q 010392 166 -GGE-------VERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (512)
Q Consensus 166 -~~~-------~~~~~~~~d~~llvida~~g~~~~-~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~ 233 (512)
... ....+..+|++++|+|+.+..... ...+...+.. .++|+++|+||+|+....... ..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~------~~~~ 176 (204)
T cd01878 103 LPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE------ERLE 176 (204)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH------HHhh
Confidence 111 112356799999999998754333 3333344433 357999999999986543111 1111
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
....+++++||++|. |+.++++.|.+.+
T Consensus 177 -------~~~~~~~~~Sa~~~~----------gi~~l~~~L~~~~ 204 (204)
T cd01878 177 -------AGRPDAVFISAKTGE----------GLDELLEAIEELL 204 (204)
T ss_pred -------cCCCceEEEEcCCCC----------CHHHHHHHHHhhC
Confidence 123579999999999 9999999987653
No 215
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.73 E-value=3.9e-17 Score=149.81 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=104.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCCChHHH
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~~~~~~ 169 (512)
|+|+|..|+|||||++++++..+.....++... .....+..+ ...+.+|||||+.+|....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFE-----------------NYSADVEVDGKPVELGLWDTAGQEDYDRLR 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEe-----------------eeeEEEEECCEEEEEEEEECCCCcccchhc
Confidence 589999999999999999987665433333210 011122223 3468999999999998888
Q ss_pred HHHHHhccEEEEEEeCCCCC-chhH-HHHHHHHHHc--CCcEEEEEeccCCCCCCch-----------hhHhhhHHHHHH
Q 010392 170 ERILNMVEGVLLVVDSVEGP-MPQT-RFVLKKALEF--GHAVVVVVNKIDRPSARPD-----------YVINSTFELFIE 234 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~-~~~~-~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~-----------~~~~~~~~~~~~ 234 (512)
..+++.+|++|+|+|.++.. .... ..|+..+... ++|+++|+||+|+...... -..++..++...
T Consensus 64 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 64 PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 88899999999999987642 2222 2355555544 6899999999998642110 001111222222
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+ ..+++++||++|. |++++++.+.+.+
T Consensus 144 ~~------~~~~~e~Sa~~~~----------~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IG------AVKYLECSALTQE----------GVREVFEEAIRAA 171 (174)
T ss_pred cC------CcEEEEecCCCCC----------CHHHHHHHHHHHh
Confidence 21 1268999999999 9999999988764
No 216
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.73 E-value=3.9e-17 Score=148.60 Aligned_cols=156 Identities=20% Similarity=0.240 Sum_probs=101.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC-ChHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD-FGGEV 169 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~-~~~~~ 169 (512)
+|+++|++|+|||||+++++...+...+.++. + +.......+......+.+|||||+.. +....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~--------------~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 65 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNL--------------E-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQL 65 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCCh--------------H-HhceEEEEECCEEEEEEEEECCCCcccccchH
Confidence 58999999999999999998765432222221 0 11111122233345688999999985 45567
Q ss_pred HHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH-----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~-----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
..+++.+|++|+|+|+++... .....|+..+.. .++|+++|+||+|+...+.. ..++........ .
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~~-------~ 137 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQV-STEEGEKLASEL-------G 137 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCcc-CHHHHHHHHHHc-------C
Confidence 788999999999999887532 233444444443 36899999999998643211 112222222211 2
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+++++||++|.+ |+.++++.+.+.+
T Consensus 138 ~~~~e~Sa~~~~~---------~v~~~f~~l~~~~ 163 (165)
T cd04146 138 CLFFEVSAAEDYD---------GVHSVFHELCREV 163 (165)
T ss_pred CEEEEeCCCCCch---------hHHHHHHHHHHHH
Confidence 4689999999831 7999999988654
No 217
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.73 E-value=3e-17 Score=151.14 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=117.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
..+..+|+++|..|||||||+++|....... . ..|.......+.+.+..+.+||.+|+..+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~------------------~pT~g~~~~~i~~~~~~~~~~d~gG~~~~ 71 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-T------------------IPTIGFNIEEIKYKGYSLTIWDLGGQESF 71 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-E------------------EEESSEEEEEEEETTEEEEEEEESSSGGG
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-c------------------CcccccccceeeeCcEEEEEEeccccccc
Confidence 4567899999999999999999997542211 1 22444555677889999999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
...|..++..+|++|+|||+.+. ...+.++.+..+.. .++|+++++||+|+.++.. .+++.+.+.-.... .
T Consensus 72 ~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~---~~~i~~~l~l~~l~-~ 147 (175)
T PF00025_consen 72 RPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS---EEEIKEYLGLEKLK-N 147 (175)
T ss_dssp GGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST---HHHHHHHTTGGGTT-S
T ss_pred cccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch---hhHHHhhhhhhhcc-c
Confidence 99999999999999999998863 23444555544443 2689999999999876532 23344433211111 2
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
...+.++.+||.+|. |+.+.+++|.+.
T Consensus 148 ~~~~~v~~~sa~~g~----------Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 148 KRPWSVFSCSAKTGE----------GVDEGLEWLIEQ 174 (175)
T ss_dssp SSCEEEEEEBTTTTB----------THHHHHHHHHHH
T ss_pred CCceEEEeeeccCCc----------CHHHHHHHHHhc
Confidence 346779999999999 999999998875
No 218
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.73 E-value=5.9e-17 Score=149.59 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=105.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~~~~ 167 (512)
++|+++|++|+|||||+++|+.........++.. .. ....+... +..+.+|||||+.+|..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~--------------~~---~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIE--------------NT---FSKIIRYKGQDYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchh--------------hh---EEEEEEECCEEEEEEEEECCChHhhHH
Confidence 6899999999999999999997765433333220 00 01122222 34678999999999998
Q ss_pred HHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
....++..+|++++|+|.++... .....++..+.. .+.|+++|+||+|+...+. ....+........
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~------- 136 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ-VSTEEGKELAESW------- 136 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc-cCHHHHHHHHHHc-------
Confidence 88899999999999999887432 233444444433 3579999999999864221 1112222222221
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
..+++++||++|. |+.++++++.+.+
T Consensus 137 ~~~~~~~Sa~~~~----------gv~~l~~~l~~~~ 162 (180)
T cd04137 137 GAAFLESSARENE----------NVEEAFELLIEEI 162 (180)
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 2478999999999 8999999888765
No 219
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.5e-17 Score=141.69 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=115.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+...+++++|+.|+|||+|+.+++.+.+.-....++ |+.+.+....+..+..+++||||.|++.|
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTi--------------GveFgSrIinVGgK~vKLQIWDTAGQErF 71 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTI--------------GVEFGSRIVNVGGKTVKLQIWDTAGQERF 71 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhccccccee--------------eeeecceeeeecCcEEEEEEeecccHHHH
Confidence 4568899999999999999999999987765555555 77777777777778889999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
+.-+..+++.+.++++|+|++. ......-.|+..++.+ ++-+++++||.|+...+ +....+...+.++
T Consensus 72 RSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R-~VtflEAs~FaqE------- 143 (214)
T KOG0086|consen 72 RSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPER-EVTFLEASRFAQE------- 143 (214)
T ss_pred HHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhh-hhhHHHHHhhhcc-------
Confidence 9999999999999999999776 4455666777777665 45578899999997654 2222222222211
Q ss_pred cccceeeeccccCccC
Q 010392 242 CDFQAIYASGIQGKAG 257 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~ 257 (512)
.++.+..+||++|.|+
T Consensus 144 nel~flETSa~TGeNV 159 (214)
T KOG0086|consen 144 NELMFLETSALTGENV 159 (214)
T ss_pred cceeeeeecccccccH
Confidence 1234789999999943
No 220
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.73 E-value=7.9e-17 Score=150.82 Aligned_cols=161 Identities=21% Similarity=0.286 Sum_probs=109.2
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
.....++|+++|++|+|||||+++|++..+.....+. .|.|....... + +..+.||||||+..
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~--------------~~~t~~~~~~~--~-~~~l~l~DtpG~~~ 82 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT--------------PGRTQLINFFE--V-NDKLRLVDLPGYGY 82 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC--------------CCceeEEEEEe--c-CCeEEEeCCCCCCC
Confidence 3456789999999999999999999976432221111 14444433322 2 36899999999642
Q ss_pred ----------ChHHHHHHHHhc---cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhhhHH
Q 010392 165 ----------FGGEVERILNMV---EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFE 230 (512)
Q Consensus 165 ----------~~~~~~~~~~~~---d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~~~~ 230 (512)
+......++..+ +++++|+|+..+......+++..+...++|+++++||+|+.... .+...+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~ 162 (196)
T PRK00454 83 AKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRK 162 (196)
T ss_pred cCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHH
Confidence 333334455544 67888899887766665566677777889999999999986432 1222333333
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.+... ..+++++||++|. |++++++.|.+.+.
T Consensus 163 ~l~~~-------~~~~~~~Sa~~~~----------gi~~l~~~i~~~~~ 194 (196)
T PRK00454 163 ALKFG-------DDEVILFSSLKKQ----------GIDELRAAIAKWLA 194 (196)
T ss_pred HHHhc-------CCceEEEEcCCCC----------CHHHHHHHHHHHhc
Confidence 33221 3468999999999 99999999887663
No 221
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.73 E-value=5e-17 Score=170.66 Aligned_cols=148 Identities=23% Similarity=0.256 Sum_probs=110.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|++|+|||||+|+|++........ ..|+|.+.....+.+++..+++|||||+.++...
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~---------------~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ 279 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTD---------------IAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDE 279 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCcccccEEEEEEECCeEEEEEeCCCCCCCccH
Confidence 4689999999999999999999765322111 1255666666777888899999999999876532
Q ss_pred --------HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 169 --------VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 169 --------~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
...++..+|++++|+|++++.......+|.. ..++|+++|+||+|+....... .
T Consensus 280 ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~----------------~ 341 (449)
T PRK05291 280 VEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE----------------E 341 (449)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh----------------h
Confidence 3346788999999999988765555555544 4478999999999986532111 0
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
....+++++||++|. |+++|++.|.+.++
T Consensus 342 ~~~~~~i~iSAktg~----------GI~~L~~~L~~~l~ 370 (449)
T PRK05291 342 ENGKPVIRISAKTGE----------GIDELREAIKELAF 370 (449)
T ss_pred ccCCceEEEEeeCCC----------CHHHHHHHHHHHHh
Confidence 112468999999999 99999999998774
No 222
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.73 E-value=5.3e-17 Score=149.09 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=103.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|..|+|||||+.+++...+...+.++. .........+......+.+|||||+.+|...+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~---------------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA---------------FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---------------eeeeeEEEEECCEEEEEEEEECCCChhhcccc
Confidence 368999999999999999998876654433332 11111111222223578899999999988887
Q ss_pred HHHHHhccEEEEEEeCCCCCc--hhHHHHHHHHHH--cCCcEEEEEeccCCCCCC----------chh-hHhhhHHHHHH
Q 010392 170 ERILNMVEGVLLVVDSVEGPM--PQTRFVLKKALE--FGHAVVVVVNKIDRPSAR----------PDY-VINSTFELFIE 234 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~--~~~~~~l~~~~~--~~~p~ivviNK~Dl~~~~----------~~~-~~~~~~~~~~~ 234 (512)
..+++.+|++|+|+|..+... .....|+..+.. .+.|+++++||+|+.... ... ..++...+...
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 145 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK 145 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH
Confidence 888899999999999887432 222346655654 368999999999986421 001 11122222221
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHH
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
.+ ..+++++||++|. |+.++++.+.
T Consensus 146 ~~------~~~~~e~Sa~~~~----------~v~~lf~~~~ 170 (173)
T cd04130 146 IG------ACEYIECSALTQK----------NLKEVFDTAI 170 (173)
T ss_pred hC------CCeEEEEeCCCCC----------CHHHHHHHHH
Confidence 11 1268999999999 9999998775
No 223
>PRK04213 GTP-binding protein; Provisional
Probab=99.73 E-value=1.1e-16 Score=150.58 Aligned_cols=159 Identities=22% Similarity=0.284 Sum_probs=102.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC----
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS---- 163 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~---- 163 (512)
...+|+++|.+|+|||||+++|.+....... ..|+|.... .+.+. .+++|||||+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~----------------~~~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGK----------------RPGVTRKPN--HYDWG--DFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCC----------------CCceeeCce--EEeec--ceEEEeCCccccccc
Confidence 4578999999999999999999875432111 124454433 23333 68999999953
Q ss_pred -------CChHHHHHHH----HhccEEEEEEeCCCC-----------CchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc
Q 010392 164 -------DFGGEVERIL----NMVEGVLLVVDSVEG-----------PMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP 221 (512)
Q Consensus 164 -------~~~~~~~~~~----~~~d~~llvida~~g-----------~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~ 221 (512)
.+...+..++ ..+|++++|+|+... ....+.+++..+...++|+++|+||+|+...+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~- 146 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR- 146 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-
Confidence 2333333333 346889999998642 12234556677777789999999999986543
Q ss_pred hhhHhhhHHHHHHhcCCc--cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 222 DYVINSTFELFIELNATD--EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~--~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.+..+++.+.+ +... .....+++++||++| |++++++.|.+.++.-
T Consensus 147 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~SA~~g-----------gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 147 DEVLDEIAERL---GLYPPWRQWQDIIAPISAKKG-----------GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHHHHHHHh---cCCccccccCCcEEEEecccC-----------CHHHHHHHHHHhhcCc
Confidence 22333333322 2210 011236899999998 4688999998887653
No 224
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=4.3e-17 Score=180.78 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=118.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC---
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~--- 164 (512)
..++|+++|++|+|||||+|+|++........ ..|+|.+.....+.+++..+.||||||+.+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~---------------~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVND---------------LAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCC---------------CCCCCcCcceeEEEECCCEEEEEECCCcccCcc
Confidence 45899999999999999999999875432111 125566666667778888999999999742
Q ss_pred ------ChHH--HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 165 ------FGGE--VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 165 ------~~~~--~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
+... ...+++.+|++++|+|++++...+...++..+...++|+++|+||+|+.+... .+.+.+.+....
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l 590 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFR---RQRLERLWKTEF 590 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhH---HHHHHHHHHHhc
Confidence 1111 23456789999999999999999988888888888999999999999975321 122222221110
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
......|++++||++|. |+.+|++.+.+..+.
T Consensus 591 --~~~~~~~ii~iSAktg~----------gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 591 --DRVTWARRVNLSAKTGW----------HTNRLAPAMQEALES 622 (712)
T ss_pred --cCCCCCCEEEEECCCCC----------CHHHHHHHHHHHHHH
Confidence 01113478999999999 889999888876653
No 225
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.72 E-value=1.5e-17 Score=146.70 Aligned_cols=162 Identities=18% Similarity=0.204 Sum_probs=116.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|.++|++|+|||||++++....+...+..++ |..+......+...-..++||||+|+++|.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTI--------------gadFltKev~Vd~~~vtlQiWDTAGQERFq 72 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATI--------------GADFLTKEVQVDDRSVTLQIWDTAGQERFQ 72 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhcccc--------------chhheeeEEEEcCeEEEEEEEecccHHHhh
Confidence 457899999999999999999999988876666655 544545555555444578899999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCC-----CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCC-chhhHhhhHHHHHHhcC
Q 010392 167 GEVERILNMVEGVLLVVDSVEG-----PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSAR-PDYVINSTFELFIELNA 237 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g-----~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~~~ 237 (512)
..-..+++.+|.+++|+|.... +...-.+++..+... .-|+||++||+|+.+.. .....+...+..+
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---- 148 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK---- 148 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH----
Confidence 9999999999999999997653 222333444433322 35899999999987532 1222233333332
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+..++|+|++||+.+. ++...++.+.+..
T Consensus 149 --s~gnipyfEtSAK~~~----------NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 149 --SKGNIPYFETSAKEAT----------NVDEAFEEIARRA 177 (210)
T ss_pred --hcCCceeEEecccccc----------cHHHHHHHHHHHH
Confidence 2347899999999999 7777777777654
No 226
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=6.1e-17 Score=146.45 Aligned_cols=143 Identities=21% Similarity=0.272 Sum_probs=96.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC----CC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS----DF 165 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~----~~ 165 (512)
++|+++|++|+|||||+++|.+.... . . .+ ..+.+... .+|||||+. ++
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~-~-~------------------~~-----~~v~~~~~--~~iDtpG~~~~~~~~ 54 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL-A-R------------------KT-----QAVEFNDK--GDIDTPGEYFSHPRW 54 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc-C-c------------------cc-----eEEEECCC--CcccCCccccCCHHH
Confidence 47999999999999999998754211 0 0 01 11222222 379999973 34
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
...+..++..+|++++|+|++++........+.. ..++|+++++||+|+...+ .+++.+.+...+. ..|
T Consensus 55 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~----~~~~~~~~~~~~~-----~~p 123 (158)
T PRK15467 55 YHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD----VAATRKLLLETGF-----EEP 123 (158)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc----HHHHHHHHHHcCC-----CCC
Confidence 4455556789999999999987654333322221 2467999999999986543 2333444433332 248
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
++++||++|. |+++|++.+.+.++.
T Consensus 124 ~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 124 IFELNSHDPQ----------SVQQLVDYLASLTKQ 148 (158)
T ss_pred EEEEECCCcc----------CHHHHHHHHHHhchh
Confidence 9999999999 999999999887654
No 227
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.71 E-value=1.3e-16 Score=152.58 Aligned_cols=155 Identities=13% Similarity=0.150 Sum_probs=102.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCC-CcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKV-FRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~-~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
+|+++|.+|+|||||+++|+...+. ....++. +.+.......+......+++|||||+.++ ..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~--------------~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~ 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASG--------------DDDTYERTVSVDGEESTLVVIDHWEQEMW--TE 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCc--------------cccceEEEEEECCEEEEEEEEeCCCcchH--HH
Confidence 7999999999999999999866543 2222211 11111222223334567899999999833 22
Q ss_pred HHHHH-hccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 170 ERILN-MVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 170 ~~~~~-~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
..++. .+|++++|+|+++.. ......++..+.. .++|+++|+||+|+...+.. ..++..+.... ..
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~a~~-------~~ 137 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREV-SVQEGRACAVV-------FD 137 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccccee-cHHHHHHHHHH-------cC
Confidence 34556 899999999988742 3334455555555 35899999999998654311 11222222111 13
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++++++||++|. |++++++.+.+.+-
T Consensus 138 ~~~~e~SA~~~~----------gv~~l~~~l~~~~~ 163 (221)
T cd04148 138 CKFIETSAGLQH----------NVDELLEGIVRQIR 163 (221)
T ss_pred CeEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 468999999999 99999999998764
No 228
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.71 E-value=1.4e-16 Score=146.34 Aligned_cols=157 Identities=14% Similarity=0.095 Sum_probs=102.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
++|+++|+.|+|||||+++|+...+...+.++. +.... ....+......+.+|||||+.++....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~--------------~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FENYV-ADIEVDGKQVELALWDTAGQEDYDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ccceE-EEEEECCEEEEEEEEeCCCchhhhhcc
Confidence 579999999999999999999876653333322 11111 111222223468999999999888777
Q ss_pred HHHHHhccEEEEEEeCCCCCc-hhH-HHHHHHHHH--cCCcEEEEEeccCCCCCCc-hhh----------HhhhHHHHHH
Q 010392 170 ERILNMVEGVLLVVDSVEGPM-PQT-RFVLKKALE--FGHAVVVVVNKIDRPSARP-DYV----------INSTFELFIE 234 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~-~~~-~~~l~~~~~--~~~p~ivviNK~Dl~~~~~-~~~----------~~~~~~~~~~ 234 (512)
..++..+|++++|+|..+... ... ..|+..++. .++|+++|+||+|+..... ... ..+.++....
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~ 146 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANK 146 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHH
Confidence 778889999999999875321 222 234444444 3689999999999864321 000 0111111111
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
. ..++++++||++|. |++++++.+.+.
T Consensus 147 ~------~~~~~~~~Sa~~~~----------~v~~lf~~l~~~ 173 (175)
T cd01870 147 I------GAFGYMECSAKTKE----------GVREVFEMATRA 173 (175)
T ss_pred c------CCcEEEEeccccCc----------CHHHHHHHHHHH
Confidence 1 12368999999999 999999998865
No 229
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.71 E-value=2.6e-16 Score=164.40 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=108.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|++|+|||||+|+|++......... .|+|.+.....+.+++..+++|||||+.++.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~---------------pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI---------------KGTTRDVVEGDFELNGILIKLLDTAGIREHA 265 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC---------------CCcEEEEEEEEEEECCEEEEEeeCCCcccch
Confidence 3457899999999999999999998654322111 1667777777788899999999999997665
Q ss_pred HHH--------HHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 167 GEV--------ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 167 ~~~--------~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
..+ ..+++.+|++++|+|++++...... ++..+...++|+++|+||+|+...+ ...+...
T Consensus 266 ~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~-------~~~~~~~---- 333 (442)
T TIGR00450 266 DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINS-------LEFFVSS---- 333 (442)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcc-------hhhhhhh----
Confidence 432 3567889999999999876554444 6666666789999999999986431 1111111
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
...+++.+||++ . |+.++++.+.+.+
T Consensus 334 ---~~~~~~~vSak~-~----------gI~~~~~~L~~~i 359 (442)
T TIGR00450 334 ---KVLNSSNLSAKQ-L----------KIKALVDLLTQKI 359 (442)
T ss_pred ---cCCceEEEEEec-C----------CHHHHHHHHHHHH
Confidence 124688999997 3 6667666666544
No 230
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.70 E-value=3.7e-16 Score=139.49 Aligned_cols=149 Identities=28% Similarity=0.313 Sum_probs=103.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 167 (512)
.||+++|++|+|||||+++|+.......... +++.......+..++ ..+.+|||||+.++..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKP----------------GTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCC----------------CceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 5899999999999999999998763222221 344444444456666 7789999999999988
Q ss_pred HHHHHHHhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 168 EVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g-------~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
.+......++.++.++|.... .......++..+.. +.|+++++||+|+...+ ...+....+....
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~---- 137 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK---LKTHVAFLFAKLN---- 137 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch---hhHHHHHHHhhcc----
Confidence 888888888888888875432 21222333333322 78999999999997643 2333333333222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHH
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESI 274 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i 274 (512)
..+++++||.+|. |+..+++.|
T Consensus 138 --~~~~~~~sa~~~~----------gv~~~~~~l 159 (161)
T TIGR00231 138 --GEPIIPLSAETGK----------NIDSAFKIV 159 (161)
T ss_pred --CCceEEeecCCCC----------CHHHHHHHh
Confidence 2358999999999 888888875
No 231
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.70 E-value=7.2e-17 Score=129.67 Aligned_cols=85 Identities=33% Similarity=0.515 Sum_probs=78.8
Q ss_pred cccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCc
Q 010392 286 DGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD 365 (512)
Q Consensus 286 ~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~ 365 (512)
+.||.++|||+.+|++.|+++++||++|+|+.||.|++.. ++.+ +|.+|+.++|.++.++++|.|||||++.|+++
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~ 76 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKI---KITELRVFNNGEVVTADTVTAGDIAILTGLKG 76 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEE---EeceeEEEeCCCeEECcEECCCCEEEEECCCC
Confidence 3689999999999999999999999999999999998876 4444 89999999999999999999999999999999
Q ss_pred cccCCeEec
Q 010392 366 IQIGETIAD 374 (512)
Q Consensus 366 ~~~Gdtl~~ 374 (512)
+.+||||++
T Consensus 77 ~~~Gdtl~~ 85 (85)
T cd03690 77 LRVGDVLGD 85 (85)
T ss_pred CcCccccCC
Confidence 999999964
No 232
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.70 E-value=1.3e-16 Score=162.00 Aligned_cols=151 Identities=23% Similarity=0.222 Sum_probs=101.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCC-C
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHS-D 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~-~ 164 (512)
....+|+++|.+|+|||||+|+|++......... +.|.+.....+.+ ++..+.||||||+. +
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~----------------~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~ 250 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQL----------------FATLDPTTRRLDLPDGGEVLLTDTVGFIRD 250 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCC----------------ccccCCEEEEEEeCCCceEEEEecCccccc
Confidence 4568899999999999999999997642211111 3455555556666 46789999999983 2
Q ss_pred ChH-------HHHHHHHhccEEEEEEeCCCCCchh-HHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHH
Q 010392 165 FGG-------EVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (512)
Q Consensus 165 ~~~-------~~~~~~~~~d~~llvida~~g~~~~-~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~ 233 (512)
... .+...+..+|++|+|+|+++..... ...+...+.. .++|+++|+||+|+.... . +....
T Consensus 251 l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~--~----v~~~~- 323 (351)
T TIGR03156 251 LPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP--R----IERLE- 323 (351)
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH--h----HHHHH-
Confidence 111 1223477899999999998754332 2233333333 368999999999986421 1 11110
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
. . ..+++++||++|. |+++|++.|.+.
T Consensus 324 ~---~----~~~~i~iSAktg~----------GI~eL~~~I~~~ 350 (351)
T TIGR03156 324 E---G----YPEAVFVSAKTGE----------GLDLLLEAIAER 350 (351)
T ss_pred h---C----CCCEEEEEccCCC----------CHHHHHHHHHhh
Confidence 0 0 1358999999999 999999998764
No 233
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.70 E-value=2.7e-16 Score=142.40 Aligned_cols=156 Identities=22% Similarity=0.346 Sum_probs=111.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
||+++|+.++|||||+++|....+.....++. |.........+......+.|||++|+.+|.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTI--------------GIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTS--------------SEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccc--------------cccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999887654444432 2332222222222345689999999999988888
Q ss_pred HHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 171 RILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
..+..+|++|+|+|.++. .......|+..+... +.|+++++||.|+...+ .-..++..++..+.+ .++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~-~v~~~~~~~~~~~~~-------~~~ 138 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER-EVSVEEAQEFAKELG-------VPY 138 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS-SSCHHHHHHHHHHTT-------SEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccc-cchhhHHHHHHHHhC-------CEE
Confidence 899999999999998763 334445666666554 36899999999987522 122234444443332 479
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+.+||+++. ++.++|..+++.+
T Consensus 139 ~e~Sa~~~~----------~v~~~f~~~i~~i 160 (162)
T PF00071_consen 139 FEVSAKNGE----------NVKEIFQELIRKI 160 (162)
T ss_dssp EEEBTTTTT----------THHHHHHHHHHHH
T ss_pred EEEECCCCC----------CHHHHHHHHHHHH
Confidence 999999998 9999999888653
No 234
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.70 E-value=3.1e-16 Score=135.74 Aligned_cols=146 Identities=23% Similarity=0.311 Sum_probs=106.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
++..+|.++|..|+||||++++|++...... ..|.......+.++++.+++||..|+..++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i-------------------~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr 74 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTI-------------------SPTLGFQIKTLEYKGYTLNIWDVGGQKTLR 74 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcccc-------------------CCccceeeEEEEecceEEEEEEcCCcchhH
Confidence 3467799999999999999999987643211 224555566788999999999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHH----HHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKA----LEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~----~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..|..|+..+|++|+|+|+++. ...++...+..+ +-.|.|++++.||.|+.++-..+.+..+.++ .++ ...
T Consensus 75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L-~~l---~ks 150 (185)
T KOG0073|consen 75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDL-EEL---AKS 150 (185)
T ss_pred HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCH-HHh---ccc
Confidence 9999999999999999998763 333343333333 3347899999999999854323333222221 111 133
Q ss_pred cccceeeeccccCc
Q 010392 242 CDFQAIYASGIQGK 255 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~ 255 (512)
..++++-|||.+|+
T Consensus 151 ~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 151 HHWRLVKCSAVTGE 164 (185)
T ss_pred cCceEEEEeccccc
Confidence 57889999999998
No 235
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.70 E-value=1.2e-16 Score=141.72 Aligned_cols=136 Identities=24% Similarity=0.245 Sum_probs=90.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC----CCh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS----DFG 166 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~----~~~ 166 (512)
+|+++|++|+|||||+++|++.... .. .|+ .+.+.. .+|||||+. .+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~------------------~t~-----~~~~~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YK------------------KTQ-----AVEYND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cc------------------cce-----eEEEcC---eeecCchhhhhhHHHH
Confidence 7999999999999999999865321 10 111 223332 689999983 222
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
......++.+|++++|+|++++...+...++.. .+.|+++|+||+|+.... ...++..+.....+ ..++
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~------~~~~ 122 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEAD--VDIERAKELLETAG------AEPI 122 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcc--cCHHHHHHHHHHcC------CCcE
Confidence 223345789999999999988765544444333 245999999999986421 22233333333322 1268
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHH
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
+++||++|. |++++++.+.
T Consensus 123 ~~~Sa~~~~----------gi~~l~~~l~ 141 (142)
T TIGR02528 123 FEISSVDEQ----------GLEALVDYLN 141 (142)
T ss_pred EEEecCCCC----------CHHHHHHHHh
Confidence 999999999 9999988764
No 236
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.70 E-value=3e-16 Score=149.36 Aligned_cols=158 Identities=17% Similarity=0.116 Sum_probs=105.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+|+|..|+|||||+.+|+...+...+.+++ +.... ....+......+.||||+|++.|....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi--------------~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTV--------------FENYT-ASFEIDKRRIELNMWDTSGSSYYDNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCcc--------------ccceE-EEEEECCEEEEEEEEeCCCcHHHHHHh
Confidence 479999999999999999999877665554443 11111 111222234578899999999999989
Q ss_pred HHHHHhccEEEEEEeCCCCC-chhHHH-HHHHHHH--cCCcEEEEEeccCCCCCCc--hh---------hHhhhHHHHHH
Q 010392 170 ERILNMVEGVLLVVDSVEGP-MPQTRF-VLKKALE--FGHAVVVVVNKIDRPSARP--DY---------VINSTFELFIE 234 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~-~~~~~~-~l~~~~~--~~~p~ivviNK~Dl~~~~~--~~---------~~~~~~~~~~~ 234 (512)
..+++.+|++|+|+|.++.. ...... |...+.. .+.|+++|+||+|+..... .. ..++...+.+.
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~ 146 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQ 146 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHH
Confidence 99999999999999988742 233323 3333333 2579999999999864210 00 00111111111
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
++ -.+++++||+++.+ |+.++|+.....
T Consensus 147 ~~------~~~y~E~SAk~~~~---------~V~~~F~~~~~~ 174 (222)
T cd04173 147 VG------AVSYVECSSRSSER---------SVRDVFHVATVA 174 (222)
T ss_pred cC------CCEEEEcCCCcCCc---------CHHHHHHHHHHH
Confidence 11 13799999999872 488998887764
No 237
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.70 E-value=2.9e-16 Score=173.57 Aligned_cols=153 Identities=19% Similarity=0.262 Sum_probs=113.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|++|+|||||+|+|++....... ..|+|+......+.+++.++++|||||+.++...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn----------------~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGN----------------WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCC----------------CCCceEeeEEEEEEcCceEEEEEECCCccccccc
Confidence 357999999999999999999865432111 1278888888888999999999999999877431
Q ss_pred ----------HHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhhhHHHHHHh
Q 010392 169 ----------VERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFELFIEL 235 (512)
Q Consensus 169 ----------~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~ 235 (512)
...++ ..+|++++|+|+++.. ....++.++.+.++|+++|+||+|+.+.+ .....+++.+ .
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~---~- 140 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSA---R- 140 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHH---H-
Confidence 11222 3689999999998743 33456677888899999999999986432 1222222222 1
Q ss_pred cCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 236 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++|++++||.+|. |++++++.+.+..+
T Consensus 141 ------LG~pVvpiSA~~g~----------GIdeL~~~I~~~~~ 168 (772)
T PRK09554 141 ------LGCPVIPLVSTRGR----------GIEALKLAIDRHQA 168 (772)
T ss_pred ------hCCCEEEEEeecCC----------CHHHHHHHHHHhhh
Confidence 24589999999999 99999999887653
No 238
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=6.7e-16 Score=140.33 Aligned_cols=166 Identities=22% Similarity=0.376 Sum_probs=119.5
Q ss_pred hhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCC
Q 010392 82 RLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG 161 (512)
Q Consensus 82 ~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG 161 (512)
...+......|+++|.+|+|||||||+|++......... ..|.|...+...+.. .+.|+|.||
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSk--------------tPGrTq~iNff~~~~---~~~lVDlPG 79 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSK--------------TPGRTQLINFFEVDD---ELRLVDLPG 79 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCC--------------CCCccceeEEEEecC---cEEEEeCCC
Confidence 445566788999999999999999999998654222221 227777776655433 389999999
Q ss_pred CC----------CChHHHHHHHHh---ccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhh
Q 010392 162 HS----------DFGGEVERILNM---VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINS 227 (512)
Q Consensus 162 ~~----------~~~~~~~~~~~~---~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~ 227 (512)
+. .+...+..|+.. ..++++++|+.++....++++++.+...++|++|++||+|..... ....+..
T Consensus 80 YGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~ 159 (200)
T COG0218 80 YGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNK 159 (200)
T ss_pred cccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHH
Confidence 74 244555556543 567999999999999999999999999999999999999998632 2233344
Q ss_pred hHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 228 TFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 228 ~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+.+.+ ........+ ++..|+.++. |+++|.+.|.+++
T Consensus 160 v~~~l---~~~~~~~~~-~~~~ss~~k~----------Gi~~l~~~i~~~~ 196 (200)
T COG0218 160 VAEEL---KKPPPDDQW-VVLFSSLKKK----------GIDELKAKILEWL 196 (200)
T ss_pred HHHHh---cCCCCccce-EEEEeccccc----------CHHHHHHHHHHHh
Confidence 44332 221111111 7788888888 8999988888765
No 239
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.70 E-value=1.9e-16 Score=160.27 Aligned_cols=155 Identities=23% Similarity=0.257 Sum_probs=122.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
.-.+++++|.||+|||||+|+|++....+...-+ |+|.+.-...+..+|+.+.++||+|..+..+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~---------------GTTRDviee~i~i~G~pv~l~DTAGiRet~d 280 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA---------------GTTRDVIEEDINLNGIPVRLVDTAGIRETDD 280 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCC---------------CCccceEEEEEEECCEEEEEEecCCcccCcc
Confidence 4568999999999999999999998776654433 8899999999999999999999999987654
Q ss_pred HHH--------HHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 168 EVE--------RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 168 ~~~--------~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
.++ ..+..||.+|+|+|++.....+....+. +...++|+++|+||.|+......... +..
T Consensus 281 ~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~--- 348 (454)
T COG0486 281 VVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE--------KLA--- 348 (454)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh--------hcc---
Confidence 443 4578899999999999976666666666 55667899999999999865421111 111
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
...+++.+||++|. |++.|.+.|.+.+..-
T Consensus 349 --~~~~~i~iSa~t~~----------Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 349 --NGDAIISISAKTGE----------GLDALREAIKQLFGKG 378 (454)
T ss_pred --CCCceEEEEecCcc----------CHHHHHHHHHHHHhhc
Confidence 12368999999999 9999999998877544
No 240
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=4.3e-16 Score=139.24 Aligned_cols=154 Identities=23% Similarity=0.286 Sum_probs=107.0
Q ss_pred EEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-CeeEEEEeCCCCCCChH-----
Q 010392 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSDFGG----- 167 (512)
Q Consensus 94 vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~i~liDtPG~~~~~~----- 167 (512)
++|+.|+|||||+++|++........ ..+.+.........+. ...+.+|||||+.++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSP---------------VPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCC---------------CCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 58999999999999998764432111 1133444444444444 67899999999987653
Q ss_pred --HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 168 --EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 168 --~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
.....+..+|++++|+|+..........++......+.|+++|+||+|+..........+.... ........|
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~ 140 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLL-----ILLLLLGLP 140 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHh-----hcccccCCc
Confidence 4445788899999999999877666666667777788999999999998754311111100011 111223568
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
++++||.++. |+.++++.+.+.
T Consensus 141 ~~~~sa~~~~----------~v~~l~~~l~~~ 162 (163)
T cd00880 141 VIAVSALTGE----------GIDELREALIEA 162 (163)
T ss_pred eEEEeeeccC----------CHHHHHHHHHhh
Confidence 9999999998 999999998765
No 241
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.69 E-value=5.2e-16 Score=140.37 Aligned_cols=149 Identities=13% Similarity=0.212 Sum_probs=99.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 167 (512)
.+|+++|+.|+|||||+.+++...+.....+.. + .. ...+..++ ..+.+|||+|+.+.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~--------------~-~~---~~~i~~~~~~~~l~i~D~~g~~~~-- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG--------------G-RF---KKEVLVDGQSHLLLIRDEGGAPDA-- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc--------------c-ce---EEEEEECCEEEEEEEEECCCCCch--
Confidence 369999999999999999998775543221110 1 01 11233344 56899999999763
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHh-hhHHHHHHhcCCccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVIN-STFELFIELNATDEQ 241 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~ 241 (512)
.+++.+|++++|+|.++.. ......|+..+... ++|+++|+||+|+.......+.. +..++.++.
T Consensus 61 ---~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~------ 131 (158)
T cd04103 61 ---QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADM------ 131 (158)
T ss_pred ---hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHh------
Confidence 3567899999999988743 33335666666544 47999999999985322122222 222222111
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
..++++++||++|. |++++|+.+.+.
T Consensus 132 ~~~~~~e~SAk~~~----------~i~~~f~~~~~~ 157 (158)
T cd04103 132 KRCSYYETCATYGL----------NVERVFQEAAQK 157 (158)
T ss_pred CCCcEEEEecCCCC----------CHHHHHHHHHhh
Confidence 13579999999999 999999988754
No 242
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.68 E-value=2.8e-16 Score=144.06 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=99.3
Q ss_pred EEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-CeeEEEEeCCCCCC-------C
Q 010392 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSD-------F 165 (512)
Q Consensus 94 vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~i~liDtPG~~~-------~ 165 (512)
++|++|+|||||+++|++........ .+.|+......+.++ +..+.+|||||+.+ +
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANY----------------PFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCC----------------CceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 58999999999999999864311111 134555555566677 88999999999843 2
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCC-------chhHHHHHHHHHH----------cCCcEEEEEeccCCCCCCchhhHhhh
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGP-------MPQTRFVLKKALE----------FGHAVVVVVNKIDRPSARPDYVINST 228 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~-------~~~~~~~l~~~~~----------~~~p~ivviNK~Dl~~~~~~~~~~~~ 228 (512)
...+...+..+|++++|+|+.+.. ......+...+.. .++|+++|+||+|+...+...... .
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~ 143 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-V 143 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-H
Confidence 223455678899999999988752 2222333333332 368999999999987532111110 0
Q ss_pred HHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
... ......+++++||+++. |+.++++.+...
T Consensus 144 ~~~-------~~~~~~~~~~~Sa~~~~----------gl~~l~~~l~~~ 175 (176)
T cd01881 144 REL-------ALEEGAEVVPISAKTEE----------GLDELIRAIYEL 175 (176)
T ss_pred HHH-------hcCCCCCEEEEehhhhc----------CHHHHHHHHHhh
Confidence 111 11123468999999999 999999988764
No 243
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=1.3e-16 Score=135.41 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=123.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+.+|+|++|+|||+|+-++..+.+...+..++ |+.+......+.....++.||||+|++.|..
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTi--------------GvDfkirTv~i~G~~VkLqIwDtAGqErFrt 72 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTI--------------GVDFKIRTVDINGDRVKLQIWDTAGQERFRT 72 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEe--------------eeeEEEEEeecCCcEEEEEEeecccHHHHHH
Confidence 35667899999999999999999887776665555 7777777666776678899999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
.+..+++..+++++|+|.+++ .+.....|++.++.. .+|-++|+||.|..+.+.- .-++.+...... ++
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV-~t~dAr~~A~~m-------gi 144 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVV-DTEDARAFALQM-------GI 144 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceee-ehHHHHHHHHhc-------Cc
Confidence 999999999999999998774 567788999888776 3689999999998764321 122233332222 34
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
..|++||+.+. ++++.+..|.+.+
T Consensus 145 e~FETSaKe~~----------NvE~mF~cit~qv 168 (198)
T KOG0079|consen 145 ELFETSAKENE----------NVEAMFHCITKQV 168 (198)
T ss_pred hheehhhhhcc----------cchHHHHHHHHHH
Confidence 57999999998 7777777766554
No 244
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.68 E-value=2.5e-16 Score=126.21 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=77.9
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcccc
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~ 368 (512)
|.++|||+.++++.|+++++||++|+|++||.|++...++.+ +|.+|+.++|.++.++++|.||||+++.|++++++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~ 77 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKE---RISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRT 77 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEE---EeeEEEEEECCCceECCeeCCCCEEEEECCCCccc
Confidence 568999999999999999999999999999999998877665 89999999999999999999999999999999999
Q ss_pred CCeEec
Q 010392 369 GETIAD 374 (512)
Q Consensus 369 Gdtl~~ 374 (512)
||||+.
T Consensus 78 Gdtl~~ 83 (83)
T cd04092 78 GDTLVT 83 (83)
T ss_pred CCEEeC
Confidence 999974
No 245
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.66 E-value=5.7e-16 Score=124.25 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=76.0
Q ss_pred eeeEEEee---eCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccc
Q 010392 291 MLATNLEY---DEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQ 367 (512)
Q Consensus 291 ~~V~~~~~---~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~ 367 (512)
++|||+.. +++.|+++++||++|+|+.||.|++...++.+ +|++|+.+.|.++.++++|.||||+++.|++++.
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~---kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~ 77 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEV---RLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQ 77 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEE---EeeEeEEEecCCeeEcCEECCCCEEEEECCCCcc
Confidence 47899999 99999999999999999999999998876655 8999999999999999999999999999999999
Q ss_pred cCCeEec
Q 010392 368 IGETIAD 374 (512)
Q Consensus 368 ~Gdtl~~ 374 (512)
+|||||+
T Consensus 78 ~Gdtl~~ 84 (85)
T cd03689 78 IGDTLTE 84 (85)
T ss_pred ccCEeeC
Confidence 9999985
No 246
>PRK11058 GTPase HflX; Provisional
Probab=99.66 E-value=1.5e-15 Score=157.78 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=103.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe-eEEEEeCCCCCCC-
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-KINIIDTPGHSDF- 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~-~i~liDtPG~~~~- 165 (512)
..+.|+++|.+|+|||||+|+|++........ .+.|++.....+.+.+. .+.||||||+.+.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~----------------~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l 259 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQ----------------LFATLDPTLRRIDVADVGETVLADTVGFIRHL 259 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccC----------------CCCCcCCceEEEEeCCCCeEEEEecCcccccC
Confidence 45689999999999999999998754321111 13455555556666554 8899999998542
Q ss_pred -hH------HHHHHHHhccEEEEEEeCCCCCchhH----HHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHH
Q 010392 166 -GG------EVERILNMVEGVLLVVDSVEGPMPQT----RFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE 234 (512)
Q Consensus 166 -~~------~~~~~~~~~d~~llvida~~g~~~~~----~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~ 234 (512)
.. .+...+..+|++|+|+|+++...... ..++..+...++|+++|+||+|+.... .. .+. . ..
T Consensus 260 p~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~-~~---~~~-~-~~ 333 (426)
T PRK11058 260 PHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF-EP---RID-R-DE 333 (426)
T ss_pred CHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch-hH---HHH-H-Hh
Confidence 11 12334677999999999988643332 233444444468999999999986421 11 111 0 01
Q ss_pred hcCCccccccc-eeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 235 LNATDEQCDFQ-AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 235 ~~~~~~~~~~p-vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
. ..| ++++||++|. |++.|++.|.+.+..
T Consensus 334 ~-------~~~~~v~ISAktG~----------GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 334 E-------NKPIRVWLSAQTGA----------GIPLLFQALTERLSG 363 (426)
T ss_pred c-------CCCceEEEeCCCCC----------CHHHHHHHHHHHhhh
Confidence 1 123 4889999999 999999999988753
No 247
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.65 E-value=3.5e-15 Score=142.04 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=108.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.....+|+++|+.|+|||||+++++...+...+.+++ +..+.........+...+.+|||+|+.+|
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTL--------------GVEVHPLKFYTNCGPICFNVWDTAGQEKF 71 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc--------------ceEEEEEEEEECCeEEEEEEEECCCchhh
Confidence 3445789999999999999999888765544333333 33332222222334578999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchh-HHHHHHHHHH--cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~-~~~~l~~~~~--~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
...+..++..+|++++|+|.++...-. ...|+..+.. .++|+++++||+|+..... ..+....... .
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~---~~~~~~~~~~-------~ 141 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV---KARQITFHRK-------K 141 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC---CHHHHHHHHH-------c
Confidence 888888899999999999988754322 2344444432 3589999999999864221 1111122211 1
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.+.++++||++|. |+++.+..|.+.+.
T Consensus 142 ~~~~~e~Sa~~~~----------~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 142 NLQYYDISAKSNY----------NFEKPFLWLARRLT 168 (215)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 3468999999999 88888888877653
No 248
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.65 E-value=2.2e-15 Score=141.37 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=86.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE-----ECCeeEEEEeCCCCCCC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-----YNDTKINIIDTPGHSDF 165 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-----~~~~~i~liDtPG~~~~ 165 (512)
+|+++|..++|||||+++++...+.....+++ |.++......+. .....+.||||+|+++|
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Ti--------------g~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~ 67 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTV--------------GCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV 67 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcce--------------eeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH
Confidence 69999999999999999999887655444443 333333322221 12357899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----------------------cCCcEEEEEeccCCCCC
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----------------------FGHAVVVVVNKIDRPSA 219 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----------------------~~~p~ivviNK~Dl~~~ 219 (512)
......+++.+|++|+|+|.++. .......|+..+.. .++|+++|+||+|+...
T Consensus 68 ~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 99999999999999999998774 33444566666644 25799999999998653
No 249
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=2.7e-15 Score=140.46 Aligned_cols=161 Identities=16% Similarity=0.116 Sum_probs=97.4
Q ss_pred eEEEEEeCCCCcHHHHHH-HHHHhcCC-----CcCccceeeeeeccchhhhhcceeEEe---eeeEEEECCeeEEEEeCC
Q 010392 90 RNIAIIAHVDHGKTTLVD-AMLKQAKV-----FRDNQTVKERIMDSNDLERERGITILS---KNTSITYNDTKINIIDTP 160 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~-~Ll~~~~~-----~~~~~~~~~~~~d~~~~e~~~g~ti~~---~~~~~~~~~~~i~liDtP 160 (512)
.+|+++|..|+|||||+. ++....+. ..+.+++.. .|.. ...... ....+......+.||||+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~--~~~~------~~~~~~~~~~~~~~~~~~v~l~iwDTa 74 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWA--IDQY------RVCQEVLERSRDVVDGVSVSLRLWDTF 74 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceec--ccce------eEEeeeccccceeeCCEEEEEEEEeCC
Confidence 589999999999999996 44433221 112222200 0000 000000 000122334678999999
Q ss_pred CCCCChHHHHHHHHhccEEEEEEeCCCCC-chhHH-HHHHHHHHc--CCcEEEEEeccCCCCCCc---------------
Q 010392 161 GHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTR-FVLKKALEF--GHAVVVVVNKIDRPSARP--------------- 221 (512)
Q Consensus 161 G~~~~~~~~~~~~~~~d~~llvida~~g~-~~~~~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~--------------- 221 (512)
|+.+. ....+++.+|++|+|+|.++.. ..... .|+..++.. +.|+++|+||+|+.....
T Consensus 75 G~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~ 152 (195)
T cd01873 75 GDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIK 152 (195)
T ss_pred CChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccc
Confidence 99763 3345788999999999987643 33343 355555543 579999999999864210
Q ss_pred ---hhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 222 ---DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 222 ---~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.-..++..++.+++ .++++++||++|. |++++++.+.+.
T Consensus 153 ~~~~V~~~e~~~~a~~~-------~~~~~E~SAkt~~----------~V~e~F~~~~~~ 194 (195)
T cd01873 153 NADILPPETGRAVAKEL-------GIPYYETSVVTQF----------GVKDVFDNAIRA 194 (195)
T ss_pred cCCccCHHHHHHHHHHh-------CCEEEEcCCCCCC----------CHHHHHHHHHHh
Confidence 11122333332222 3479999999999 999999988753
No 250
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.65 E-value=1e-15 Score=122.74 Aligned_cols=83 Identities=27% Similarity=0.384 Sum_probs=78.0
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcccc
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~ 368 (512)
|.++|||+.++++.|+++++||++|+|++||.|++...++.+ +|.+|+.+++.+..+++++.|||||++.|++++++
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~ 77 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKE---RVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTAT 77 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEE---EeeEEEEEcCCCceECCEeCCCCEEEEECCCCCcc
Confidence 468999999999999999999999999999999999877666 89999999999999999999999999999999999
Q ss_pred CCeEec
Q 010392 369 GETIAD 374 (512)
Q Consensus 369 Gdtl~~ 374 (512)
||||++
T Consensus 78 Gdtl~~ 83 (83)
T cd04088 78 GDTLCD 83 (83)
T ss_pred CCEeeC
Confidence 999974
No 251
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.64 E-value=5.2e-15 Score=134.03 Aligned_cols=155 Identities=26% Similarity=0.356 Sum_probs=103.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC------
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF------ 165 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~------ 165 (512)
|+++|++|+|||||++.|++........+.. +.|..... +.+.+ .+.+|||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~--------------~~t~~~~~--~~~~~-~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTP--------------GKTQLINF--FNVND-KFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCC--------------CcceeEEE--EEccC-eEEEecCCCccccccCHHH
Confidence 7999999999999999999544432222221 33332222 22222 8999999998653
Q ss_pred ----hHHHHHHHH---hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhhhHHHHHHhcC
Q 010392 166 ----GGEVERILN---MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFELFIELNA 237 (512)
Q Consensus 166 ----~~~~~~~~~---~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~~~ 237 (512)
...+..++. .++++++++|............++.+...+.|+++++||+|+.... .......+...+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~--- 141 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL--- 141 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh---
Confidence 222333343 3578899999887766666677788888889999999999986432 11222223222221
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.....+++++||+++. ++.++++.|.+++
T Consensus 142 --~~~~~~~~~~Sa~~~~----------~~~~l~~~l~~~~ 170 (170)
T cd01876 142 --FEIDPPIILFSSLKGQ----------GIDELRALIEKWL 170 (170)
T ss_pred --ccCCCceEEEecCCCC----------CHHHHHHHHHHhC
Confidence 1223578999999998 9999999987753
No 252
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.64 E-value=3.4e-15 Score=138.94 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=101.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCCChH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFGG 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~~~~ 167 (512)
.+|+++|+.|+|||||+++|..........+++... . ...+.+. ...+++|||+|+.++..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~--------------~---~~~~~~~~~~~~l~i~Dt~g~~~~~~ 64 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN--------------Y---VTDCRVDGKPVQLALWDTAGQEEYER 64 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce--------------E---EEEEEECCEEEEEEEEECCCChhccc
Confidence 479999999999999999998665543222221100 0 1112222 24678999999988776
Q ss_pred HHHHHHHhccEEEEEEeCCCCCc-hhHH-HHHHHHHHc--CCcEEEEEeccCCCCCCch-------hh--HhhhHHHHHH
Q 010392 168 EVERILNMVEGVLLVVDSVEGPM-PQTR-FVLKKALEF--GHAVVVVVNKIDRPSARPD-------YV--INSTFELFIE 234 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~-~~~~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~~-------~~--~~~~~~~~~~ 234 (512)
.....+..+|++++++|.+.... .... .|+..+... .+|+++|+||+|+...... .. .++.......
T Consensus 65 ~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 65 LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 55567788999999999876322 2222 355555543 5899999999998542110 00 1112222222
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+ ..+++++||++|. |++++++.+.+.+
T Consensus 145 ~~------~~~~~e~Sa~~~~----------~v~~~f~~l~~~~ 172 (187)
T cd04129 145 IG------AKKYMECSALTGE----------GVDDVFEAATRAA 172 (187)
T ss_pred hC------CcEEEEccCCCCC----------CHHHHHHHHHHHH
Confidence 21 1358999999999 9999999998765
No 253
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.9e-15 Score=145.21 Aligned_cols=194 Identities=16% Similarity=0.209 Sum_probs=141.0
Q ss_pred cccccCCCCcccccccccccchHHHHhhhhccCCCCccchhHHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 36 FGYNLSSSPITTTSLKFRHCNTATQRHRRIQCSVSPPAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 36 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
.+|..|.|+++++|.........+++..+++ .+-+-.|+++|-+|+|||||+++++.....
T Consensus 125 ~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LE-------------------LKllADVGLVG~PNaGKSTlls~vS~AkPK 185 (369)
T COG0536 125 LGNAHFKSSVNRAPRFATPGEPGEERDLRLE-------------------LKLLADVGLVGLPNAGKSTLLSAVSAAKPK 185 (369)
T ss_pred ccchhhcCcccCCcccCCCCCCCceEEEEEE-------------------EeeecccccccCCCCcHHHHHHHHhhcCCc
Confidence 7899999999999988877777766666554 334667999999999999999999998887
Q ss_pred CcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCCC
Q 010392 116 FRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 116 ~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~~ 187 (512)
+..++.+ |+..+...+.. .+..+.+-|.||..+ ......+++..|-++++|||.+.
T Consensus 186 IadYpFT----------------TL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~ 249 (369)
T COG0536 186 IADYPFT----------------TLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSP 249 (369)
T ss_pred ccCCccc----------------cccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCc
Confidence 7777654 67777777765 456799999999864 44556778899999999999774
Q ss_pred C----CchhHHHHHHHHHHc-----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCC
Q 010392 188 G----PMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGL 258 (512)
Q Consensus 188 g----~~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~ 258 (512)
. .......+...+..+ ++|.++|+||+|+... ++..+.+.+.+...... .+.+++||.+++
T Consensus 250 ~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~~~~~-----~~~~~ISa~t~~--- 319 (369)
T COG0536 250 IDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD--EEELEELKKALAEALGW-----EVFYLISALTRE--- 319 (369)
T ss_pred ccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC--HHHHHHHHHHHHHhcCC-----Ccceeeehhccc---
Confidence 3 233444455555555 5799999999996543 23344444443322111 112339999999
Q ss_pred CCCCcCCCchhhHHHHHHhCCCC
Q 010392 259 SPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 259 ~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
|+++|+..+.+.+..-
T Consensus 320 -------g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 320 -------GLDELLRALAELLEET 335 (369)
T ss_pred -------CHHHHHHHHHHHHHHh
Confidence 9999988888766443
No 254
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-14 Score=137.95 Aligned_cols=169 Identities=22% Similarity=0.268 Sum_probs=115.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC-
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD- 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~- 164 (512)
..+..+|+++|.+|+|||||.|.+++.......... .+|.......+..+...+.|+||||...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~---------------~TTr~~ilgi~ts~eTQlvf~DTPGlvs~ 133 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKV---------------HTTRHRILGIITSGETQLVFYDTPGLVSK 133 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccc---------------cceeeeeeEEEecCceEEEEecCCccccc
Confidence 346789999999999999999999987665433222 4566666677788889999999999643
Q ss_pred -----------ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc-CCcEEEEEeccCCCCCCchhhHh------
Q 010392 165 -----------FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-GHAVVVVVNKIDRPSARPDYVIN------ 226 (512)
Q Consensus 165 -----------~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~-~~p~ivviNK~Dl~~~~~~~~~~------ 226 (512)
+......++..||.+++|+|+.+.-....-.++..+.++ ++|-++|+||+|..... ..+-
T Consensus 134 ~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k--~~Ll~l~~~L 211 (379)
T KOG1423|consen 134 KMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQK--RLLLNLKDLL 211 (379)
T ss_pred chhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhh--hHHhhhHHhc
Confidence 223445677889999999998863333344556666665 58999999999976421 1111
Q ss_pred ----------hhHHHHHHhc---CCcccccc----ceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 227 ----------STFELFIELN---ATDEQCDF----QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 227 ----------~~~~~~~~~~---~~~~~~~~----pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
++.+.|.... .....+.+ .||++||++|. |+++|-++|....|..
T Consensus 212 t~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~----------GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 212 TNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGE----------GIKDLKQYLMSQAPPG 273 (379)
T ss_pred cccccchhhhhHHHHhccCCcccccccccCcccceeEEEEeccccc----------CHHHHHHHHHhcCCCC
Confidence 1222221111 00001112 28999999999 9999999999887654
No 255
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.63 E-value=1.7e-15 Score=120.73 Aligned_cols=81 Identities=31% Similarity=0.448 Sum_probs=75.7
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcccc
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~ 368 (512)
|.++|||+.++++ |+++++||++|+|++||.|++...++++ +|.+|+.+.+.++.+++++.||||+++.|++ +++
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~---~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~~ 75 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKV---RVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CAS 75 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEE---EEeEEEEEeCCCceEccEECCCCEEEEECCC-ccc
Confidence 5789999999988 9999999999999999999999887766 8999999999999999999999999999998 999
Q ss_pred CCeEec
Q 010392 369 GETIAD 374 (512)
Q Consensus 369 Gdtl~~ 374 (512)
||||++
T Consensus 76 Gdtl~~ 81 (81)
T cd04091 76 GDTFTD 81 (81)
T ss_pred CCEecC
Confidence 999973
No 256
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.62 E-value=2.6e-15 Score=143.67 Aligned_cols=155 Identities=22% Similarity=0.395 Sum_probs=115.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCee-EEEEeCCCCCC-
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTK-INIIDTPGHSD- 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~-i~liDtPG~~~- 164 (512)
+.+..|++||.+|+|||||+++|......+..+.++ |+..+...+.+++.. +++-|.||...
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFT----------------TL~P~iG~v~yddf~q~tVADiPGiI~G 257 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFT----------------TLRPHIGTVNYDDFSQITVADIPGIIEG 257 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCccccccee----------------eeccccceeeccccceeEeccCcccccc
Confidence 346679999999999999999999887766665543 777787888887765 99999999764
Q ss_pred ------ChHHHHHHHHhccEEEEEEeCCCC----CchhHHHHHHHHHHc-----CCcEEEEEeccCCCCCCchhhHhhhH
Q 010392 165 ------FGGEVERILNMVEGVLLVVDSVEG----PMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTF 229 (512)
Q Consensus 165 ------~~~~~~~~~~~~d~~llvida~~g----~~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~~~~~~~~~~~~~ 229 (512)
......+.+..|+..++|+|.+.+ ...+...++..+..+ ..|.++|+||+|+.++. +..++++.
T Consensus 258 Ah~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-~~~l~~L~ 336 (366)
T KOG1489|consen 258 AHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-KNLLSSLA 336 (366)
T ss_pred ccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-HHHHHHHH
Confidence 445667888999999999998765 344555555555554 46899999999986432 22233333
Q ss_pred HHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 230 ELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 230 ~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
+.+ ... .|+++||++++ |+.+|++.|.+.
T Consensus 337 ~~l---q~~------~V~pvsA~~~e----------gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 337 KRL---QNP------HVVPVSAKSGE----------GLEELLNGLREL 365 (366)
T ss_pred HHc---CCC------cEEEeeecccc----------chHHHHHHHhhc
Confidence 332 221 38999999999 999999887653
No 257
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.62 E-value=4.2e-15 Score=131.16 Aligned_cols=149 Identities=21% Similarity=0.228 Sum_probs=99.8
Q ss_pred EEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE--ECCeeEEEEeCCCCCCChHHHHH
Q 010392 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT--YNDTKINIIDTPGHSDFGGEVER 171 (512)
Q Consensus 94 vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~--~~~~~i~liDtPG~~~~~~~~~~ 171 (512)
++|++|+|||||+++|++........... . .......+. ..+..+.+||+||+.++......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t--------------~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 64 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETT--------------I--IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRL 64 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccc--------------h--hheeeEEEEECCEEEEEEEEecCChHHHHhHHHH
Confidence 58999999999999999875521111110 0 111111222 22568999999999998888888
Q ss_pred HHHhccEEEEEEeCCCCCchhHHHHH-----HHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 172 ILNMVEGVLLVVDSVEGPMPQTRFVL-----KKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 172 ~~~~~d~~llvida~~g~~~~~~~~l-----~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
.++.+|++++|+|+..+........+ ......++|+++|+||+|+.......... ....+. .....++
T Consensus 65 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~-~~~~~~------~~~~~~~ 137 (157)
T cd00882 65 YYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE-LAEQLA------KELGVPY 137 (157)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH-HHHHHH------hhcCCcE
Confidence 89999999999999986544444322 23334478999999999987543222211 011111 1124579
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHH
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
+++|+.++. |+.++++.|.
T Consensus 138 ~~~s~~~~~----------~i~~~~~~l~ 156 (157)
T cd00882 138 FETSAKTGE----------NVEELFEELA 156 (157)
T ss_pred EEEecCCCC----------ChHHHHHHHh
Confidence 999999998 8999988875
No 258
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.62 E-value=4.4e-15 Score=119.88 Aligned_cols=86 Identities=48% Similarity=0.788 Sum_probs=77.3
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcccc
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~ 368 (512)
|+++||++..+++.|+++++||++|+|++||.|++...+......+|++|+.++|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 57899999999999999999999999999999998876432222489999999999999999999999999999999999
Q ss_pred CCeEec
Q 010392 369 GETIAD 374 (512)
Q Consensus 369 Gdtl~~ 374 (512)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
No 259
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.2e-15 Score=124.50 Aligned_cols=151 Identities=21% Similarity=0.237 Sum_probs=115.9
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
+...+.+..|+|+.|+|||+|+..+....+...-+.++ |+.+......+.....+++||||.|+++
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphti--------------gvefgtriievsgqkiklqiwdtagqer 72 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI--------------GVEFGTRIIEVSGQKIKLQIWDTAGQER 72 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCccc--------------ceecceeEEEecCcEEEEEEeecccHHH
Confidence 34568899999999999999999999988876666555 6666666667777778999999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHcCCc---EEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGHA---VVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~~~p---~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|+..+.++++.+.++++|+|..... -.....|+..++....| ++++.||.|+...+ +...++.+++..+.+
T Consensus 73 fravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qr-dv~yeeak~faeeng---- 147 (215)
T KOG0097|consen 73 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQR-DVTYEEAKEFAEENG---- 147 (215)
T ss_pred HHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcc-cCcHHHHHHHHhhcC----
Confidence 9999999999999999999977643 34445666666665444 78899999997654 334455554433322
Q ss_pred ccccceeeeccccCccC
Q 010392 241 QCDFQAIYASGIQGKAG 257 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~ 257 (512)
..++.+||++|.|+
T Consensus 148 ---l~fle~saktg~nv 161 (215)
T KOG0097|consen 148 ---LMFLEASAKTGQNV 161 (215)
T ss_pred ---eEEEEecccccCcH
Confidence 34899999999943
No 260
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.61 E-value=5.7e-15 Score=159.71 Aligned_cols=146 Identities=20% Similarity=0.306 Sum_probs=105.5
Q ss_pred eCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH------H
Q 010392 96 AHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE------V 169 (512)
Q Consensus 96 G~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~------~ 169 (512)
|.+|+|||||+|+|++....... ..|+|++.....+.+++.++++|||||+.++... .
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n----------------~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGN----------------WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecC----------------CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 88999999999999876432111 2378888888888888999999999999887542 2
Q ss_pred HHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccccee
Q 010392 170 ERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAI 247 (512)
Q Consensus 170 ~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi 247 (512)
..++ ..+|++++|+|+++. .....+...+.+.++|+++|+||+|+.+... ...+...+.+. .++|++
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~--i~~d~~~L~~~-------lg~pvv 133 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKG--IRIDEEKLEER-------LGVPVV 133 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCC--ChhhHHHHHHH-------cCCCEE
Confidence 2232 368999999998872 2344555566678999999999999864321 11112222111 235799
Q ss_pred eeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 248 YASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 248 ~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++||++|. |++++++.+.+..
T Consensus 134 ~tSA~tg~----------Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 134 PTSATEGR----------GIERLKDAIRKAI 154 (591)
T ss_pred EEECCCCC----------CHHHHHHHHHHHh
Confidence 99999999 9999999998754
No 261
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.61 E-value=5.4e-16 Score=133.01 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=115.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
+...++|+++|..-+|||||+-+++.+.+.-....+... ++......++.....++||||+|++.|
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQA--------------SF~~kk~n~ed~ra~L~IWDTAGQErf 75 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQA--------------SFQNKKVNVEDCRADLHIWDTAGQERF 75 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHH--------------HHhhcccccccceeeeeeeeccchHhh
Confidence 345789999999999999999999988776554444321 122222334444557899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...-.-+++.++++|+|+|.++. .+...+.|...++.. .+-+++|+||+|+...+ ....++........+.
T Consensus 76 HALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR-~Vt~qeAe~YAesvGA---- 150 (218)
T KOG0088|consen 76 HALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER-QVTRQEAEAYAESVGA---- 150 (218)
T ss_pred hccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhh-hhhHHHHHHHHHhhch----
Confidence 98888899999999999998774 455566676666655 36789999999997544 2233333333333333
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.++.+||+.+. |+.+||+.+...
T Consensus 151 ---~y~eTSAk~N~----------Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 151 ---LYMETSAKDNV----------GISELFESLTAK 173 (218)
T ss_pred ---hheeccccccc----------CHHHHHHHHHHH
Confidence 47899999998 999999887754
No 262
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.7e-16 Score=136.16 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=116.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC---------CeeEEEE
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---------DTKINII 157 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---------~~~i~li 157 (512)
+...++..+|++|+|||||+.++....+......++ ||.+......+.-. ...+++|
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTV--------------GIDFreKrvvY~s~gp~g~gr~~rihLQlW 72 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTV--------------GIDFREKRVVYNSSGPGGGGRGQRIHLQLW 72 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEe--------------ecccccceEEEeccCCCCCCcceEEEEeee
Confidence 345678899999999999999998877765555444 44443332222211 1367899
Q ss_pred eCCCCCCChHHHHHHHHhccEEEEEEeCC-CCCchhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHH
Q 010392 158 DTPGHSDFGGEVERILNMVEGVLLVVDSV-EGPMPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELF 232 (512)
Q Consensus 158 DtPG~~~~~~~~~~~~~~~d~~llvida~-~g~~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~ 232 (512)
||+|+++|+..+-.+++.|-+.|+++|.+ +..+...+.|+.+++.+ +.-++++.||+|+.+.+. ...++...+.
T Consensus 73 DTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~-Vs~~qa~~La 151 (219)
T KOG0081|consen 73 DTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV-VSEDQAAALA 151 (219)
T ss_pred ccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhh-hhHHHHHHHH
Confidence 99999999999999999999999999955 45677888999888765 234889999999986541 1222333333
Q ss_pred HHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 233 ~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
..+ .+|+|++||-+|.|+.. .++-|++.+.+.+
T Consensus 152 ~ky-------glPYfETSA~tg~Nv~k------ave~LldlvM~Ri 184 (219)
T KOG0081|consen 152 DKY-------GLPYFETSACTGTNVEK------AVELLLDLVMKRI 184 (219)
T ss_pred HHh-------CCCeeeeccccCcCHHH------HHHHHHHHHHHHH
Confidence 332 46899999999995543 5555666665544
No 263
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=9.4e-15 Score=141.17 Aligned_cols=155 Identities=23% Similarity=0.266 Sum_probs=104.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
...++|+|.|++|+|||||+++++.....+..++++ |-....++++.+..++++|||||.-|-.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFT----------------TK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFT----------------TKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcc----------------ccceeEeeeecCCceEEEecCCcccCCC
Confidence 368899999999999999999999988887777764 5667778999999999999999986521
Q ss_pred --------HHHHHHH-HhccEEEEEEeCCC--CCc-hhHHHHHHHHHH-cCCcEEEEEeccCCCCCCchhhHhhhHHHHH
Q 010392 167 --------GEVERIL-NMVEGVLLVVDSVE--GPM-PQTRFVLKKALE-FGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (512)
Q Consensus 167 --------~~~~~~~-~~~d~~llvida~~--g~~-~~~~~~l~~~~~-~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~ 233 (512)
.....++ ...+.+||++|.++ |.. +....+++.++. ++.|+++|+||+|..+. +.++++...+.
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~---e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE---EKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch---hHHHHHHHHHH
Confidence 1112223 34688999999776 322 222344444443 46799999999998743 23344444343
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
..+... ...+|+..+. +++.+-+.+..
T Consensus 307 ~~~~~~------~~~~~~~~~~----------~~d~~~~~v~~ 333 (346)
T COG1084 307 EEGGEE------PLKISATKGC----------GLDKLREEVRK 333 (346)
T ss_pred hhcccc------ccceeeeehh----------hHHHHHHHHHH
Confidence 333221 2456666666 55555555444
No 264
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.60 E-value=9.4e-15 Score=137.14 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=105.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCCChHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~ 168 (512)
.+|+++|.+|+|||||+|+|++............ .. .+|... ..+.. ....+.+|||||+.+....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~--~~---------~~t~~~--~~~~~~~~~~l~l~DtpG~~~~~~~ 68 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG--VV---------ETTMKR--TPYPHPKFPNVTLWDLPGIGSTAFP 68 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccC--cc---------ccccCc--eeeecCCCCCceEEeCCCCCcccCC
Confidence 5799999999999999999998543221111110 00 011111 11111 1246899999998764333
Q ss_pred HHHH-----HHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC----------chhhHhhhHHHHH
Q 010392 169 VERI-----LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR----------PDYVINSTFELFI 233 (512)
Q Consensus 169 ~~~~-----~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~----------~~~~~~~~~~~~~ 233 (512)
...+ +..+|.+++|.| .........+++.+.+.+.|+++|+||+|+...+ .++.++++++...
T Consensus 69 ~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 146 (197)
T cd04104 69 PDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCL 146 (197)
T ss_pred HHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHH
Confidence 3333 345788777754 3456667778888888899999999999985321 1234445554444
Q ss_pred HhcCCccccccceeeeccc--cCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 234 ELNATDEQCDFQAIYASGI--QGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~--~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
+..........+||.+|+. .++ ++..|.+.+...+|..
T Consensus 147 ~~~~~~~~~~p~v~~vS~~~~~~~----------~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 147 ENLQEAGVSEPPVFLVSNFDPSDY----------DFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHcCCCCCCEEEEeCCChhhc----------ChHHHHHHHHHHhhHH
Confidence 3222111223478999998 455 8999999999998864
No 265
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.60 E-value=4.6e-14 Score=135.10 Aligned_cols=181 Identities=20% Similarity=0.143 Sum_probs=114.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
...+.|+++|++|+|||||++.|+........ ....|. + ......+.+++++||||+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~--------------~~~~g~-i----~i~~~~~~~i~~vDtPg~~--- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI--------------SDIKGP-I----TVVTGKKRRLTFIECPNDI--- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcc--------------cccccc-E----EEEecCCceEEEEeCCchH---
Confidence 34577999999999999999999875221100 001121 1 1122357789999999964
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEE-EEEeccCCCCCC--chhhHhhhHHHHHHhcCCccccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRPSAR--PDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~i-vviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
..+...+..+|.+++|+|+..+...++..++..+...++|.+ +|+||+|+.... .+....++++.+..... ..
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~----~~ 170 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY----QG 170 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC----CC
Confidence 555667889999999999999999999999999988899954 599999986432 23344445443321111 13
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEee
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEY 298 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~ 298 (512)
.+++++||++...+.. .....++..|...-+.+-...+....+++.+++.
T Consensus 171 ~ki~~iSa~~~~~~~~-----~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~ 220 (225)
T cd01882 171 AKLFYLSGIVHGRYPK-----TEIHNLARFISVMKFRPLNWRNSHPYVLADRMED 220 (225)
T ss_pred CcEEEEeeccCCCCCH-----HHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeec
Confidence 4799999998752211 1123344444433343333344444555555543
No 266
>PLN00023 GTP-binding protein; Provisional
Probab=99.59 E-value=1.9e-14 Score=141.78 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=90.2
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-------------CC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-------------ND 151 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-------------~~ 151 (512)
.+....+|+++|+.|+|||||+++|+...+.....+++ |.++......+.. ..
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTI--------------G~d~~ik~I~~~~~~~~~~~ik~d~~k~ 82 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTI--------------GCTVGVKHITYGSPGSSSNSIKGDSERD 82 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCce--------------eeeEEEEEEEECCcccccccccccCCce
Confidence 34556789999999999999999999876654444443 3333322222211 23
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---------------CCcEEEEEeccC
Q 010392 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---------------GHAVVVVVNKID 215 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---------------~~p~ivviNK~D 215 (512)
..++||||+|++.|...+..+++.+|++|+|+|.++. .......|+..+... ++|+++|+||+|
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 5689999999999999999999999999999998763 344555677766653 378999999999
Q ss_pred CCCC
Q 010392 216 RPSA 219 (512)
Q Consensus 216 l~~~ 219 (512)
+...
T Consensus 163 L~~~ 166 (334)
T PLN00023 163 IAPK 166 (334)
T ss_pred cccc
Confidence 9653
No 267
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.59 E-value=8.8e-15 Score=127.38 Aligned_cols=137 Identities=28% Similarity=0.352 Sum_probs=96.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC----CCC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH----SDF 165 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~----~~~ 165 (512)
++|+++|.+|||||||+++|.+......... .+.+.+ ++|||||- ..|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq-------------------------~i~~~~---~~IDTPGEyiE~~~~ 53 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQ-------------------------AIEYYD---NTIDTPGEYIENPRF 53 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccc-------------------------eeEecc---cEEECChhheeCHHH
Confidence 5799999999999999999987544321111 122322 56999993 335
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
...+......||.+++|.|+++....--- ..+..++.|+|-|+||+|+... +..++..++.+...+.. .
T Consensus 54 y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~~~--~~~i~~a~~~L~~aG~~------~ 122 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLPSD--DANIERAKKWLKNAGVK------E 122 (143)
T ss_pred HHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCccc--hhhHHHHHHHHHHcCCC------C
Confidence 55555566789999999999874322111 2334567899999999999832 23455566666666664 2
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHH
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
+|++|+.+|+ |+++|.+.|.
T Consensus 123 if~vS~~~~e----------Gi~eL~~~L~ 142 (143)
T PF10662_consen 123 IFEVSAVTGE----------GIEELKDYLE 142 (143)
T ss_pred eEEEECCCCc----------CHHHHHHHHh
Confidence 6999999999 9999988764
No 268
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.59 E-value=1.8e-14 Score=123.24 Aligned_cols=107 Identities=24% Similarity=0.334 Sum_probs=79.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh----
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG---- 166 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~---- 166 (512)
+|+|+|.+|+|||||+|+|++........ ..+.|.......+.+.+..+.|+||||..+-.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~---------------~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSN---------------IPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESS---------------STTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccc---------------cccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH
Confidence 58999999999999999999743221111 11445555456677888999999999986531
Q ss_pred -----HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEec
Q 010392 167 -----GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNK 213 (512)
Q Consensus 167 -----~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK 213 (512)
......+..+|++++|+|+.+........+++.++ .+.|+++|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 22444557789999999988755556667777776 88999999998
No 269
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=7.3e-15 Score=130.85 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=119.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+...+|+++|-.++||||++..|-....... --|+..+...+++++..+++||..|+..+
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-------------------vPTiGfnVE~v~ykn~~f~vWDvGGq~k~ 74 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-------------------VPTIGFNVETVEYKNISFTVWDVGGQEKL 74 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-------------------CCccccceeEEEEcceEEEEEecCCCccc
Confidence 34566799999999999999999866554433 12567777889999999999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC--CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG--PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g--~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
+..|..|++..+++|+|+|+++. +.+.-.++...+... +.|++++.||.|+.++-. ..++.+.+.-....
T Consensus 75 R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---~~ei~~~L~l~~l~-- 149 (181)
T KOG0070|consen 75 RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---AAEITNKLGLHSLR-- 149 (181)
T ss_pred ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC---HHHHHhHhhhhccC--
Confidence 99999999999999999998873 223223333333333 579999999999987643 23333333211111
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
...+-+-.++|.+|. |+.+-++++.+.+..
T Consensus 150 ~~~w~iq~~~a~~G~----------GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 150 SRNWHIQSTCAISGE----------GLYEGLDWLSNNLKK 179 (181)
T ss_pred CCCcEEeeccccccc----------cHHHHHHHHHHHHhc
Confidence 135567889999999 999999998876643
No 270
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.58 E-value=1.1e-14 Score=117.32 Aligned_cols=82 Identities=26% Similarity=0.475 Sum_probs=73.3
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc-c---CC
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC-G---ID 364 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-~---l~ 364 (512)
|.++||++.++++.|+++++||++|+|+.||.|++...++.+ +|++|+.+ +.++.+++++.||||+++. + ++
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~---~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l~ 76 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEY---EVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTVK 76 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeE---EEEEEEEE-CCCccCCceECCCCEEEEEccccccC
Confidence 578999999999999999999999999999999998877655 89999855 7788999999999999995 3 67
Q ss_pred ccccCCeEec
Q 010392 365 DIQIGETIAD 374 (512)
Q Consensus 365 ~~~~Gdtl~~ 374 (512)
++.+||||++
T Consensus 77 ~~~~Gdtl~~ 86 (86)
T cd03699 77 DARVGDTITL 86 (86)
T ss_pred ccccccEeeC
Confidence 7999999974
No 271
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.58 E-value=8.7e-15 Score=126.43 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=116.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCCCh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFG 166 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~~ 166 (512)
...++.++|++-+|||+|+..+....+..-..+++ |+.+......+.- ...++++|||+|++.|+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptv--------------gvdffarlie~~pg~riklqlwdtagqerfr 72 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTV--------------GVDFFARLIELRPGYRIKLQLWDTAGQERFR 72 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCcc--------------chHHHHHHHhcCCCcEEEEEEeeccchHHHH
Confidence 35678999999999999999999888776666665 4443333332221 23588999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHc-C----CcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 167 GEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEF-G----HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~-~----~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
..+.++++.+-++++|+|.++ ..++....|+..+... + +-+.+|+.|+|+...+ +-..++...+.+..
T Consensus 73 sitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR-qVt~EEaEklAa~h----- 146 (213)
T KOG0091|consen 73 SITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR-QVTAEEAEKLAASH----- 146 (213)
T ss_pred HHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc-cccHHHHHHHHHhc-----
Confidence 999999999999999999765 4566777777666544 2 2368899999998654 33334444444333
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
...++++||++|. ++++-++.|.+.+
T Consensus 147 --gM~FVETSak~g~----------NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 147 --GMAFVETSAKNGC----------NVEEAFDMLAQEI 172 (213)
T ss_pred --CceEEEecccCCC----------cHHHHHHHHHHHH
Confidence 3458999999999 6777777776543
No 272
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.57 E-value=4.8e-16 Score=129.54 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=111.0
Q ss_pred EEeCCCCcHHHHHHHHHHhcCCCc-CccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHH
Q 010392 94 IIAHVDHGKTTLVDAMLKQAKVFR-DNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERI 172 (512)
Q Consensus 94 vvG~~~~GKSTLi~~Ll~~~~~~~-~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 172 (512)
++|.+++|||+|+-++-...+... ...++ |+........+.....++++|||.|+++|+.-+..+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistv--------------gid~rnkli~~~~~kvklqiwdtagqerfrsvt~ay 67 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTV--------------GIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAY 67 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeee--------------eeccccceeccCCcEEEEEEeeccchHHHhhhhHhh
Confidence 689999999999987765544322 12222 666666666666677899999999999999999999
Q ss_pred HHhccEEEEEEeCC-CCCchhHHHHHHHHHHcC---CcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceee
Q 010392 173 LNMVEGVLLVVDSV-EGPMPQTRFVLKKALEFG---HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIY 248 (512)
Q Consensus 173 ~~~~d~~llvida~-~g~~~~~~~~l~~~~~~~---~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~ 248 (512)
++.+|+.++++|.. ...+...+.|+..+.+++ +.++++.||+|+...+.. ..++-..+.... .+|++.
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v-~~ddg~kla~~y-------~ipfme 139 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAV-KRDDGEKLAEAY-------GIPFME 139 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcc-ccchHHHHHHHH-------CCCcee
Confidence 99999999999954 466778888988888775 578999999998643311 111122222222 468999
Q ss_pred eccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 249 ASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 249 ~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+||++|. +++..+-.|.+.+
T Consensus 140 tsaktg~----------nvd~af~~ia~~l 159 (192)
T KOG0083|consen 140 TSAKTGF----------NVDLAFLAIAEEL 159 (192)
T ss_pred ccccccc----------cHhHHHHHHHHHH
Confidence 9999999 5565555555443
No 273
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.57 E-value=2.3e-14 Score=135.10 Aligned_cols=114 Identities=21% Similarity=0.294 Sum_probs=80.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE----ECCeeEEEEeCCCCCCC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT----YNDTKINIIDTPGHSDF 165 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~----~~~~~i~liDtPG~~~~ 165 (512)
++|+++|++|+|||||+++|............ ......+. ..+..+.|||||||.++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-------------------~~~~~~~~~~~~~~~~~~~l~D~pG~~~~ 61 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-------------------EPNVATFILNSEGKGKKFRLVDVPGHPKL 61 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-------------------eecceEEEeecCCCCceEEEEECCCCHHH
Confidence 46999999999999999999876543222111 11111111 34678999999999999
Q ss_pred hHHHHHHHHhc-cEEEEEEeCCCCC--chhHHHHHHHHH----H--cCCcEEEEEeccCCCCCCch
Q 010392 166 GGEVERILNMV-EGVLLVVDSVEGP--MPQTRFVLKKAL----E--FGHAVVVVVNKIDRPSARPD 222 (512)
Q Consensus 166 ~~~~~~~~~~~-d~~llvida~~g~--~~~~~~~l~~~~----~--~~~p~ivviNK~Dl~~~~~~ 222 (512)
...+..+++.+ +++|+|+|+.... .....+++..+. . .++|+++|+||+|+..+...
T Consensus 62 ~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~ 127 (203)
T cd04105 62 RDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPA 127 (203)
T ss_pred HHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCH
Confidence 99999999998 9999999988752 222333333221 1 37899999999999866543
No 274
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.56 E-value=5.6e-14 Score=135.19 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=61.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh----
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG---- 166 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~---- 166 (512)
+|+++|.+|+|||||+++|++......... +.|.......+.+++..+++|||||+.+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~----------------~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYE----------------FTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCC----------------CccccceEEEEEECCeEEEEEECCCcccccccch
Confidence 589999999999999999987643221111 345555566677889999999999986432
Q ss_pred ---HHHHHHHHhccEEEEEEeCCCC
Q 010392 167 ---GEVERILNMVEGVLLVVDSVEG 188 (512)
Q Consensus 167 ---~~~~~~~~~~d~~llvida~~g 188 (512)
..+...++.+|++++|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 3455678899999999998653
No 275
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.55 E-value=8.5e-14 Score=146.83 Aligned_cols=155 Identities=21% Similarity=0.322 Sum_probs=115.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH--
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG-- 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~-- 167 (512)
.+|+++|++|+|||||.|+|++......+-+ |+|+......+.++++.+.++|.||..++..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwp----------------GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWP----------------GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCC----------------CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC
Confidence 4599999999999999999998654433222 8899999999999999999999999765431
Q ss_pred ----HHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 168 ----EVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 168 ----~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
-..+++ ...|.++-|+||++ .+....+--++.+.++|+++++|++|..... .+.-+..++-+.
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~--Gi~ID~~~L~~~------- 136 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKR--GIRIDIEKLSKL------- 136 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhc--CCcccHHHHHHH-------
Confidence 122333 34699999999987 3444555667888999999999999975322 111122222222
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
+.+||+++||++|. |++++++.+.+..+..
T Consensus 137 LGvPVv~tvA~~g~----------G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 137 LGVPVVPTVAKRGE----------GLEELKRAIIELAESK 166 (653)
T ss_pred hCCCEEEEEeecCC----------CHHHHHHHHHHhcccc
Confidence 35699999999999 9999999998876554
No 276
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.54 E-value=6.4e-14 Score=133.53 Aligned_cols=165 Identities=20% Similarity=0.236 Sum_probs=110.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCCChHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~ 168 (512)
.+|+++|..|+|||||+++|....+...+..++. ..+ ........ ...++.+|||+|+++|...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~--------------~~~-~~~~~~~~~~~~~~~~~Dt~gq~~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG--------------NLD-PAKTIEPYRRNIKLQLWDTAGQEEYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee--------------eee-EEEEEEeCCCEEEEEeecCCCHHHHHHH
Confidence 7899999999999999999999887765554431 111 11111111 1467899999999999999
Q ss_pred HHHHHHhccEEEEEEeCCC--CCchhHHHHHHHHHHcC---CcEEEEEeccCCCCCCchhh--Hhhh-----HHHHHHhc
Q 010392 169 VERILNMVEGVLLVVDSVE--GPMPQTRFVLKKALEFG---HAVVVVVNKIDRPSARPDYV--INST-----FELFIELN 236 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~--g~~~~~~~~l~~~~~~~---~p~ivviNK~Dl~~~~~~~~--~~~~-----~~~~~~~~ 236 (512)
+..++..++++++|+|... ........|...+.... .|+++|.||+|+........ .... ........
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKA 150 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHH
Confidence 9999999999999999764 55566667776766654 79999999999986532111 0000 00000000
Q ss_pred CCccccccceeeeccc--cCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 237 ATDEQCDFQAIYASGI--QGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~--~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.........++.+|++ .+. ++..++..+...+.
T Consensus 151 ~~~~~~~~~~~~~s~~~~~~~----------~v~~~~~~~~~~~~ 185 (219)
T COG1100 151 VLPEVANPALLETSAKSLTGP----------NVNELFKELLRKLL 185 (219)
T ss_pred hhhhhcccceeEeecccCCCc----------CHHHHHHHHHHHHH
Confidence 0000012227899999 777 78888777776653
No 277
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.52 E-value=3.7e-14 Score=120.47 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=112.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
..+.++|-.++|||||+|......+...- +.|...+...+.-++..+.+||.||+..|...|
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edm------------------iptvGfnmrk~tkgnvtiklwD~gGq~rfrsmW 82 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDM------------------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 82 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhh------------------cccccceeEEeccCceEEEEEecCCCccHHHHH
Confidence 45899999999999999988654443222 234445556666777889999999999999999
Q ss_pred HHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc-cccc
Q 010392 170 ERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD-EQCD 243 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 243 (512)
.++.+.++++++|+||.+. -....+.-+..+.. .++|++|.+||.|+.++-... ++...++... ...+
T Consensus 83 erycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~------~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 83 ERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI------ALIERMGLSSITDRE 156 (186)
T ss_pred HHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH------HHHHHhCccccccce
Confidence 9999999999999998772 22333443433333 378999999999998763221 1222223211 1234
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+-.|.+|++... +++.++++|.++..
T Consensus 157 vcC~siScke~~----------Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 157 VCCFSISCKEKV----------NIDITLDWLIEHSK 182 (186)
T ss_pred EEEEEEEEcCCc----------cHHHHHHHHHHHhh
Confidence 567899999988 88999999988753
No 278
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.3e-14 Score=123.73 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=118.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcC-CCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAK-VFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~-~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
+.-..|+|+|..++|||||++++-.... ....... .+--.|+..+..++...+..+.+||..|++..
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~------------~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~l 82 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNP------------SKITPTVGLNIGTIEVCNAPLSFWDLGGQESL 82 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCH------------HHeecccceeecceeeccceeEEEEcCChHHH
Confidence 3456799999999999999999854321 1110000 01133566667777777889999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC-Cch----hHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG-PMP----QTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g-~~~----~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
...|..++..+++++++|||.+. ... +.+.+...-...++|+++.+||.|+.++- ...++...|.. .....
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~---~~~El~~~~~~-~e~~~ 158 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM---EAAELDGVFGL-AELIP 158 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh---hHHHHHHHhhh-hhhcC
Confidence 99999999999999999999872 222 23344444445589999999999987643 33445554442 12223
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
..+.|+.++||++|. |+.+-..++...++..
T Consensus 159 ~rd~~~~pvSal~ge----------gv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 159 RRDNPFQPVSALTGE----------GVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccCccccchhhhcc----------cHHHHHHHHHHHHhhc
Confidence 346789999999999 6777777777666543
No 279
>COG2262 HflX GTPases [General function prediction only]
Probab=99.51 E-value=2.6e-13 Score=135.22 Aligned_cols=156 Identities=22% Similarity=0.243 Sum_probs=109.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-CeeEEEEeCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSD 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~i~liDtPG~~~ 164 (512)
...++.|+++|.+|+|||||+|+|++........- -.|.+.....+.+. +..+.+-||-|+.+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L----------------FATLdpttR~~~l~~g~~vlLtDTVGFI~ 252 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQL----------------FATLDPTTRRIELGDGRKVLLTDTVGFIR 252 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccc----------------cccccCceeEEEeCCCceEEEecCccCcc
Confidence 45788999999999999999999985433322222 23666666677776 58899999999875
Q ss_pred Ch--------HHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHH
Q 010392 165 FG--------GEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELF 232 (512)
Q Consensus 165 ~~--------~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~ 232 (512)
-. ..+......+|.+++|+|+++. ...+.......+.+. .+|+|+|.||+|+..... ....+...
T Consensus 253 ~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~~- 329 (411)
T COG2262 253 DLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELERG- 329 (411)
T ss_pred cCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhhc-
Confidence 22 1122234568999999998875 444445555555554 579999999999875321 11111111
Q ss_pred HHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 233 ~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
. . ..+++||++|. |++.|++.|.+.++.
T Consensus 330 ------~---~-~~v~iSA~~~~----------gl~~L~~~i~~~l~~ 357 (411)
T COG2262 330 ------S---P-NPVFISAKTGE----------GLDLLRERIIELLSG 357 (411)
T ss_pred ------C---C-CeEEEEeccCc----------CHHHHHHHHHHHhhh
Confidence 0 1 37899999999 999999999988764
No 280
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3.2e-13 Score=113.87 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=113.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+.+|-.++||||++..|.-...... -.|+..+...+.+++.++++||..|+...+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~-------------------ipTvGFnvetVtykN~kfNvwdvGGqd~iRpl 77 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTT-------------------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 77 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccc-------------------ccccceeEEEEEeeeeEEeeeeccCchhhhHH
Confidence 45699999999999999999976544322 12445556778899999999999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCC-CchhHH-HHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 169 VERILNMVEGVLLVVDSVEG-PMPQTR-FVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g-~~~~~~-~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
|.+|+....++|||+|+.+. ..+..+ ++...+.. ...+++|..||.|+.++... .++.+.+. +.. .....
T Consensus 78 WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p---qei~d~le-Le~-~r~~~ 152 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP---QEIQDKLE-LER-IRDRN 152 (180)
T ss_pred HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH---HHHHHHhc-ccc-ccCCc
Confidence 99999999999999996653 222333 33333322 25789999999999987533 34444442 211 22235
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+-+.++||.+|+ |+.+-|.++.+.+
T Consensus 153 W~vqp~~a~~gd----------gL~eglswlsnn~ 177 (180)
T KOG0071|consen 153 WYVQPSCALSGD----------GLKEGLSWLSNNL 177 (180)
T ss_pred cEeeccccccch----------hHHHHHHHHHhhc
Confidence 668899999999 7777777776654
No 281
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=129.73 Aligned_cols=162 Identities=18% Similarity=0.269 Sum_probs=114.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEe-eeeEEEECCeeEEEEeCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILS-KNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~-~~~~~~~~~~~i~liDtPG~~~ 164 (512)
...+.||.++|.+|+|||||+|+|..........- |++... ......+.+..++||||||.+|
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v----------------g~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV----------------GVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeec----------------ccCCCchhhHHhhccccceEEecCCCccc
Confidence 44678999999999999999999996544322211 111111 1112335567899999999987
Q ss_pred -------ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCcEEEEEeccCCCCC----Cc----------
Q 010392 165 -------FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDRPSA----RP---------- 221 (512)
Q Consensus 165 -------~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~----~~---------- 221 (512)
+......++...|.+++++|+.+.......++++.+... +.++++++|.+|+... +.
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~ 179 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIK 179 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHH
Confidence 556677888999999999999998777777777776655 3699999999998632 11
Q ss_pred ---hhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 222 ---DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 222 ---~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
++..+.+.+++.+ .-||+++|+..++ |+..|+.++++.+|.-
T Consensus 180 qfi~~k~~~~~~~~q~--------V~pV~~~~~r~~w----------gl~~l~~ali~~lp~e 224 (296)
T COG3596 180 QFIEEKAEALGRLFQE--------VKPVVAVSGRLPW----------GLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHHHHHHHhh--------cCCeEEeccccCc----------cHHHHHHHHHHhCccc
Confidence 0111112222221 3478999988887 9999999999999854
No 282
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.49 E-value=3e-13 Score=126.83 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=104.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH--
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG-- 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~-- 167 (512)
++|+++|.+|+|||||+|+|++......... ..+.|.........+.+..+++|||||..+...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~--------------~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~ 66 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS--------------ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP 66 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC--------------CCCcccccceeeEEECCeEEEEEECcCCCCccCCh
Confidence 4799999999999999999998754322211 125666666677778899999999999887531
Q ss_pred -----HHHHH----HHhccEEEEEEeCCCCCchhHHHHHHHHHHc-C----CcEEEEEeccCCCCCC-chhhHh----hh
Q 010392 168 -----EVERI----LNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-G----HAVVVVVNKIDRPSAR-PDYVIN----ST 228 (512)
Q Consensus 168 -----~~~~~----~~~~d~~llvida~~g~~~~~~~~l~~~~~~-~----~p~ivviNK~Dl~~~~-~~~~~~----~~ 228 (512)
++... ....|++|+|+|+.. ........++.+++. + .++++++|+.|..... .++.+. .+
T Consensus 67 ~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l 145 (196)
T cd01852 67 EQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEAL 145 (196)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHH
Confidence 12222 234689999999887 667777777777664 3 5789999999976432 222222 22
Q ss_pred HHHHHHhcCCccccccceeee-----ccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 229 FELFIELNATDEQCDFQAIYA-----SGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~-----Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
+.++...+.. ++.. |+..+. .+.+||+.|.+.++.
T Consensus 146 ~~l~~~c~~r-------~~~f~~~~~~~~~~~----------q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 146 KRLLEKCGGR-------YVAFNNKAKGEEQEQ----------QVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHhCCe-------EEEEeCCCCcchhHH----------HHHHHHHHHHHHHHh
Confidence 2333222211 2222 334444 788999998887764
No 283
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.48 E-value=3e-13 Score=126.16 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=116.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|.+|+|||+|+.++++..+...+.++++.. ......+......+.|+||+|+.+|...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~---------------y~k~~~v~~~~~~l~ilDt~g~~~~~~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDS---------------YRKELTVDGEVCMLEILDTAGQEEFSAM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcccc---------------ceEEEEECCEEEEEEEEcCCCcccChHH
Confidence 4689999999999999999999999887777765321 2222333333456789999999999999
Q ss_pred HHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 169 VERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
...++..+|+.++|++.++ ..+.....++..+.+ ..+|+++|+||+|+...+ .-..++...+... ..
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R-~V~~eeg~~la~~-------~~ 139 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER-QVSEEEGKALARS-------WG 139 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc-ccCHHHHHHHHHh-------cC
Confidence 9999999999999999776 445555555555533 246999999999997643 2222333333222 24
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
++++++||+.+. +++++|..+.+.+-.
T Consensus 140 ~~f~E~Sak~~~----------~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CAFIETSAKLNY----------NVDEVFYELVREIRL 166 (196)
T ss_pred CcEEEeeccCCc----------CHHHHHHHHHHHHHh
Confidence 568999999998 888998888876544
No 284
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.48 E-value=7.8e-14 Score=119.56 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=75.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
+|+|+|+.|+|||||+++|++........ .....+.++.............+.+||++|+..+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSV------------PEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCccccc------------ccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc
Confidence 58999999999999999999876541000 000113333333333333344589999999988877766
Q ss_pred HHHHhccEEEEEEeCCCCC-chhH---HHHHHHHHH--cCCcEEEEEeccC
Q 010392 171 RILNMVEGVLLVVDSVEGP-MPQT---RFVLKKALE--FGHAVVVVVNKID 215 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~-~~~~---~~~l~~~~~--~~~p~ivviNK~D 215 (512)
..+..+|++++|+|.++.. .... ..++..+.. .++|+++|+||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 7799999999999988743 2232 234444443 3589999999998
No 285
>PRK09866 hypothetical protein; Provisional
Probab=99.47 E-value=9.5e-13 Score=138.29 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=82.6
Q ss_pred eeEEEEeCCCCCC-----ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCC--cEEEEEeccCCCCCCchhh
Q 010392 152 TKINIIDTPGHSD-----FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH--AVVVVVNKIDRPSARPDYV 224 (512)
Q Consensus 152 ~~i~liDtPG~~~-----~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~--p~ivviNK~Dl~~~~~~~~ 224 (512)
..+.|+||||... +...+...+..+|.+|+|+|+..+.......+++.+++.+. |+++|+||+|+.+.. ...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre-edd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN-SDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc-cch
Confidence 4789999999854 23456678999999999999998777778888888888874 999999999986322 222
Q ss_pred HhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 225 INSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.+.+.+.+.............+|++||++|. |+..|++.|..+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~----------nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGY----------LANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCC----------CHHHHHHHHHhC
Confidence 3444444322100000001248999999999 999999999875
No 286
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.46 E-value=4.3e-12 Score=125.03 Aligned_cols=124 Identities=22% Similarity=0.326 Sum_probs=83.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|++|+|||||+|+|++.......... +.........+++......+..++ .++++|||||+.++
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~------~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPP------DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCC------CccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 3578999999999999999999877554322110 000111222334444445555555 47999999998775
Q ss_pred hHH---H-----------HH-------HHH-------hccEEEEEEeCCC-CCchhHHHHHHHHHHcCCcEEEEEeccCC
Q 010392 166 GGE---V-----------ER-------ILN-------MVEGVLLVVDSVE-GPMPQTRFVLKKALEFGHAVVVVVNKIDR 216 (512)
Q Consensus 166 ~~~---~-----------~~-------~~~-------~~d~~llvida~~-g~~~~~~~~l~~~~~~~~p~ivviNK~Dl 216 (512)
... + .. ..+ .+|++++++++.. ++.....+.++.+.. ++|+++|+||+|+
T Consensus 77 ~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~ 155 (276)
T cd01850 77 INNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADT 155 (276)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCc
Confidence 321 0 01 111 3688999999764 677777888888875 7999999999998
Q ss_pred CC
Q 010392 217 PS 218 (512)
Q Consensus 217 ~~ 218 (512)
..
T Consensus 156 l~ 157 (276)
T cd01850 156 LT 157 (276)
T ss_pred CC
Confidence 64
No 287
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.45 E-value=3.2e-13 Score=110.52 Aligned_cols=85 Identities=31% Similarity=0.460 Sum_probs=73.9
Q ss_pred ceeeeEEEeeeC-CCcEEEEEEEeecccCCCCEEEEccCCC------ceeeeeeeeeEeeecCceeecceecCCCEEEEc
Q 010392 289 LQMLATNLEYDE-HKGRIAIGRLHAGVLRKGMEVRVCTSED------SCRYARISELFVYEKFSRVSAEIVAAGDICAVC 361 (512)
Q Consensus 289 ~~~~V~~~~~~~-~~G~v~~grV~sG~l~~g~~v~~~~~~~------~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~ 361 (512)
+.++|||+..++ +.|+++++|||+|+|+.||.|++...+. .....+|.+|+.++|.+..++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 357899999999 9999999999999999999999876321 112248999999999999999999999999999
Q ss_pred cCCccccCCeEe
Q 010392 362 GIDDIQIGETIA 373 (512)
Q Consensus 362 ~l~~~~~Gdtl~ 373 (512)
|++++++||+.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999999864
No 288
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.44 E-value=1e-12 Score=107.75 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=71.9
Q ss_pred ceeeeEEEeeeCCC-cEEEEEEEeecccCCCCEEEEccCC------CceeeeeeeeeEeeecCceeecceecCCCEEEEc
Q 010392 289 LQMLATNLEYDEHK-GRIAIGRLHAGVLRKGMEVRVCTSE------DSCRYARISELFVYEKFSRVSAEIVAAGDICAVC 361 (512)
Q Consensus 289 ~~~~V~~~~~~~~~-G~v~~grV~sG~l~~g~~v~~~~~~------~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~ 361 (512)
+.++|||+..+++. |+++++|||||+|+.||.|++...+ ......+|.+|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 46889999999998 6799999999999999999886433 1222358999999999999999999999999999
Q ss_pred cCCccccCCeEe
Q 010392 362 GIDDIQIGETIA 373 (512)
Q Consensus 362 ~l~~~~~Gdtl~ 373 (512)
|+++...+.+..
T Consensus 81 gl~~~~~~~~t~ 92 (94)
T cd04090 81 GIDSSIVKTATI 92 (94)
T ss_pred CcchheeceEEe
Confidence 998876666543
No 289
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.42 E-value=7.3e-13 Score=120.64 Aligned_cols=113 Identities=21% Similarity=0.345 Sum_probs=68.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE---CCeeEEEEeCCCCCCC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY---NDTKINIIDTPGHSDF 165 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---~~~~i~liDtPG~~~~ 165 (512)
...|+++|+.|+|||+|...|..+....... ++ .....+.. .+..+.+||+|||...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~t-------------------S~-e~n~~~~~~~~~~~~~~lvD~PGH~rl 62 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVT-------------------SM-ENNIAYNVNNSKGKKLRLVDIPGHPRL 62 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B----------------------S-SEEEECCGSSTCGTCECEEEETT-HCC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeec-------------------cc-cCCceEEeecCCCCEEEEEECCCcHHH
Confidence 3569999999999999999999873322111 11 11111111 3457999999999999
Q ss_pred hHHHHHH---HHhccEEEEEEeCCCCCchhHH---HHHHH----HH--HcCCcEEEEEeccCCCCCCch
Q 010392 166 GGEVERI---LNMVEGVLLVVDSVEGPMPQTR---FVLKK----AL--EFGHAVVVVVNKIDRPSARPD 222 (512)
Q Consensus 166 ~~~~~~~---~~~~d~~llvida~~g~~~~~~---~~l~~----~~--~~~~p~ivviNK~Dl~~~~~~ 222 (512)
+...... +..+.++|||||+.. ...+.+ +++.. .. ..++|++|++||.|+..+...
T Consensus 63 r~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~ 130 (181)
T PF09439_consen 63 RSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPP 130 (181)
T ss_dssp CHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---H
T ss_pred HHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCH
Confidence 8877665 888999999999874 222222 22221 11 135799999999999877643
No 290
>PTZ00099 rab6; Provisional
Probab=99.40 E-value=2.3e-12 Score=118.61 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=84.5
Q ss_pred ECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhh
Q 010392 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYV 224 (512)
Q Consensus 149 ~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~ 224 (512)
.+...+.||||||++.|...+..+++.+|++|+|+|+++.. ......|+..+... ++|+++|+||+|+...+. ..
T Consensus 26 ~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~-v~ 104 (176)
T PTZ00099 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRK-VT 104 (176)
T ss_pred CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC-CC
Confidence 34468899999999999999999999999999999988742 33444566555432 468999999999864321 11
Q ss_pred HhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 225 INSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
.++........ ...++++||++|. |+.++|++|.+.+|...
T Consensus 105 ~~e~~~~~~~~-------~~~~~e~SAk~g~----------nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 105 YEEGMQKAQEY-------NTMFHETSAKAGH----------NIKVLFKKIAAKLPNLD 145 (176)
T ss_pred HHHHHHHHHHc-------CCEEEEEECCCCC----------CHHHHHHHHHHHHHhcc
Confidence 22222222221 2357899999999 99999999999886643
No 291
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.5e-12 Score=131.66 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=115.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC-
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD- 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~- 164 (512)
.+.-.+|+|+|.+|+|||||+|+|......+..+.+ |+|.+.-...++..|.++.|+||+|..+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~---------------GTTRDaiea~v~~~G~~v~L~DTAGiRe~ 329 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP---------------GTTRDAIEAQVTVNGVPVRLSDTAGIREE 329 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC---------------CcchhhheeEeecCCeEEEEEeccccccc
Confidence 345578999999999999999999998777665544 8899998999999999999999999866
Q ss_pred Ch--------HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcC------------CcEEEEEeccCCCCCCchhh
Q 010392 165 FG--------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG------------HAVVVVVNKIDRPSARPDYV 224 (512)
Q Consensus 165 ~~--------~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~------------~p~ivviNK~Dl~~~~~~~~ 224 (512)
-. ......+..+|.+++|+|+.+....+.....+.+...+ .|++++.||+|+...-.+..
T Consensus 330 ~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~ 409 (531)
T KOG1191|consen 330 SNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT 409 (531)
T ss_pred cCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccccc
Confidence 11 22344577899999999998877777766666655432 47888999999864311111
Q ss_pred HhhhHHHHHHhcCCccccccc-eeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 225 INSTFELFIELNATDEQCDFQ-AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~p-vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.. ........+ ...++ +.++|+++++ |+..|.+++.+.+
T Consensus 410 ~~-~~~~~~~~~----~~~~~i~~~vs~~tke----------g~~~L~~all~~~ 449 (531)
T KOG1191|consen 410 KI-PVVYPSAEG----RSVFPIVVEVSCTTKE----------GCERLSTALLNIV 449 (531)
T ss_pred CC-ceecccccc----CcccceEEEeeechhh----------hHHHHHHHHHHHH
Confidence 00 000000000 11233 4459999998 9999988888754
No 292
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=1.4e-13 Score=120.65 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=108.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
+...+++|+|..++||||++.+++..-+...+..++ |+++......+...+.++.+|||.|+++|.
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktI--------------gvdflerqi~v~~Edvr~mlWdtagqeEfD 83 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI--------------GVDFLERQIKVLIEDVRSMLWDTAGQEEFD 83 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcccccccccccc--------------chhhhhHHHHhhHHHHHHHHHHhccchhHH
Confidence 457889999999999999999999887766655554 443333333444556678899999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 167 GEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
..+..+++.|.+.+||++.++ ..++.+.+|.+.+... .+|.++|-||+|+.+.. .....++..+.+.+.
T Consensus 84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds-~~~~~evE~lak~l~------- 155 (246)
T KOG4252|consen 84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDS-QMDKGEVEGLAKKLH------- 155 (246)
T ss_pred HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhh-hcchHHHHHHHHHhh-------
Confidence 999999999999999999776 3556677777666544 58999999999997532 111222333322222
Q ss_pred cceeeeccccCccC
Q 010392 244 FQAIYASGIQGKAG 257 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~ 257 (512)
..++-+|++...|+
T Consensus 156 ~RlyRtSvked~NV 169 (246)
T KOG4252|consen 156 KRLYRTSVKEDFNV 169 (246)
T ss_pred hhhhhhhhhhhhhh
Confidence 23678899888843
No 293
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.36 E-value=9.8e-13 Score=120.29 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=115.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEE-EECCeeEEEEeCCCCCCCh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI-TYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~-~~~~~~i~liDtPG~~~~~ 166 (512)
...+++|||..++|||+|+..+..+.+...+.+++.+++. ....+ ..+...+.+|||.|+++|.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys---------------~~v~V~dg~~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYS---------------ANVTVDDGKPVELGLWDTAGQEDYD 67 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccce---------------EEEEecCCCEEEEeeeecCCCcccc
Confidence 3578999999999999999999998888778777643331 11222 2344568999999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCC--CCchhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhh-------------H
Q 010392 167 GEVERILNMVEGVLLVVDSVE--GPMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINST-------------F 229 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~--g~~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~-------------~ 229 (512)
....-.++.+|.+|++++..+ ........|+..++.+ +.|+|+|++|.||.+. ...++.+ .
T Consensus 68 rlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d--~~~~~~l~~~~~~~Vt~~~g~ 145 (198)
T KOG0393|consen 68 RLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDD--PSTLEKLQRQGLEPVTYEQGL 145 (198)
T ss_pred cccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhC--HHHHHHHHhccCCcccHHHHH
Confidence 877778899999999998655 3444466777877777 4899999999999732 1122222 2
Q ss_pred HHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 230 ELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 230 ~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++-++++. ..++++||++.. |+.+.++.-....
T Consensus 146 ~lA~~iga------~~y~EcSa~tq~----------~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 146 ELAKEIGA------VKYLECSALTQK----------GVKEVFDEAIRAA 178 (198)
T ss_pred HHHHHhCc------ceeeeehhhhhC----------CcHHHHHHHHHHH
Confidence 22233332 358999999998 8888888777664
No 294
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.7e-12 Score=115.05 Aligned_cols=120 Identities=21% Similarity=0.311 Sum_probs=87.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
..+.|.++|..|||||+|.-.|+.+... ++ -+++..+...+.++.....++|.|||.+.+.
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~----~T---------------vtSiepn~a~~r~gs~~~~LVD~PGH~rlR~ 97 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHR----GT---------------VTSIEPNEATYRLGSENVTLVDLPGHSRLRR 97 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCcc----Ce---------------eeeeccceeeEeecCcceEEEeCCCcHHHHH
Confidence 4467999999999999999999887332 22 2355566677777777899999999999988
Q ss_pred HHHHHHH---hccEEEEEEeCCCC---CchhHHHHHHHHH-----HcCCcEEEEEeccCCCCCCchhhHh
Q 010392 168 EVERILN---MVEGVLLVVDSVEG---PMPQTRFVLKKAL-----EFGHAVVVVVNKIDRPSARPDYVIN 226 (512)
Q Consensus 168 ~~~~~~~---~~d~~llvida~~g---~~~~~~~~l~~~~-----~~~~p~ivviNK~Dl~~~~~~~~~~ 226 (512)
....++. .+-+++||+|+..- +......+...+. +.++|+++++||.|+..+...+.+.
T Consensus 98 kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir 167 (238)
T KOG0090|consen 98 KLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR 167 (238)
T ss_pred HHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHH
Confidence 8888887 78899999997642 2222222222222 3357899999999998776555443
No 295
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.34 E-value=8.5e-12 Score=120.33 Aligned_cols=86 Identities=21% Similarity=0.362 Sum_probs=69.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC-
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD- 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~- 164 (512)
....-.|+++|.+++|||||+++|++.......+++ +|.......+.+++..|+|+|+||...
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~F----------------TTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF----------------TTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCc----------------eecccccceEeecCceEEEEcCcccccC
Confidence 345668999999999999999999987665555544 367777788999999999999999753
Q ss_pred ------ChHHHHHHHHhccEEEEEEeCCC
Q 010392 165 ------FGGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 165 ------~~~~~~~~~~~~d~~llvida~~ 187 (512)
-..++....+.||.+++|+|+..
T Consensus 124 as~g~grG~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 124 ASSGRGRGRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred cccCCCCcceeeeeeccCCEEEEEEecCC
Confidence 12456777899999999999875
No 296
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.31 E-value=1.3e-10 Score=112.43 Aligned_cols=119 Identities=21% Similarity=0.226 Sum_probs=78.9
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
......+|+++|.+|+|||||+|+|++......... .+.|.........+.+.++++|||||..+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~---------------~~~T~~~~~~~~~~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAF---------------QSETLRVREVSGTVDGFKLNIIDTPGLLE 91 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC---------------CCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 345678999999999999999999998754322111 02344444455667888999999999987
Q ss_pred ChH---H-------HHHHHH--hccEEEEEEeCCC-CCchhHHHHHHHHHH-cC----CcEEEEEeccCCCC
Q 010392 165 FGG---E-------VERILN--MVEGVLLVVDSVE-GPMPQTRFVLKKALE-FG----HAVVVVVNKIDRPS 218 (512)
Q Consensus 165 ~~~---~-------~~~~~~--~~d~~llvida~~-g~~~~~~~~l~~~~~-~~----~p~ivviNK~Dl~~ 218 (512)
... . +..++. ..|.+++|...+. .........++.+.+ ++ .++++|+||+|...
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 631 1 122232 3577777765543 333444556655554 33 47999999999863
No 297
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=4.9e-12 Score=107.33 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=113.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
++.-.++.++|-.|+||||++-++--...... ..|+..+...+.+++.++++||..|+...
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvtt-------------------kPtigfnve~v~yKNLk~~vwdLggqtSi 75 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVTT-------------------KPTIGFNVETVPYKNLKFQVWDLGGQTSI 75 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccccc-------------------CCCCCcCccccccccccceeeEccCcccc
Confidence 34556799999999999998877754433322 22455666778889999999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc--hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC-c
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM--PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-D 239 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~--~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~ 239 (512)
...|..++...|.+|+|+|+.+... ..-.++..++.+. +..++++.||+|...+- ...++...+ +.. .
T Consensus 76 rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~---t~~E~~~~L---~l~~L 149 (182)
T KOG0072|consen 76 RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL---TRSEVLKML---GLQKL 149 (182)
T ss_pred cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh---hHHHHHHHh---ChHHH
Confidence 9999999999999999999887432 2233444444332 45789999999976532 222222211 110 0
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
....+.++..||.+|. |+++.+|++.+-+.+
T Consensus 150 k~r~~~Iv~tSA~kg~----------Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 150 KDRIWQIVKTSAVKGE----------GLDPAMDWLQRPLKS 180 (182)
T ss_pred hhheeEEEeecccccc----------CCcHHHHHHHHHHhc
Confidence 1123679999999999 999999999876543
No 298
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.31 E-value=3.9e-11 Score=119.99 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=52.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEee------------e-eEE---EECCeeEE
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSK------------N-TSI---TYNDTKIN 155 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~------------~-~~~---~~~~~~i~ 155 (512)
|+++|.+|+|||||+++|+.........+... .+...|+..... . ... .+....++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT--------~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~ 72 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTT--------IDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVE 72 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcc--------ccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEE
Confidence 58999999999999999997654322222110 000111111000 0 000 12335799
Q ss_pred EEeCCCCC----CChH---HHHHHHHhccEEEEEEeCC
Q 010392 156 IIDTPGHS----DFGG---EVERILNMVEGVLLVVDSV 186 (512)
Q Consensus 156 liDtPG~~----~~~~---~~~~~~~~~d~~llvida~ 186 (512)
+|||||.. .+.+ .....++.||++++|+|+.
T Consensus 73 l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 73 LIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred EEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 99999983 3333 3445689999999999986
No 299
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.31 E-value=1.3e-11 Score=104.38 Aligned_cols=146 Identities=16% Similarity=0.194 Sum_probs=96.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-eeEEEEeCCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSDF 165 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~i~liDtPG~~~~ 165 (512)
.+-.+|+++|-.++|||||+..|......- .-+..|. +...+.+.+ .++++||..|+...
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h---------------ltpT~GF----n~k~v~~~g~f~LnvwDiGGqr~I 75 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH---------------LTPTNGF----NTKKVEYDGTFHLNVWDIGGQRGI 75 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh---------------ccccCCc----ceEEEeecCcEEEEEEecCCcccc
Confidence 456779999999999999999997653210 0111133 334455555 79999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC-CchhHH----HHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG-PMPQTR----FVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g-~~~~~~----~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
+..|..|+...|++|+|||+.+. .++++- ++++..+-..+|+.++.||.|+..+... +++...+.-.+. .
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~---eeia~klnl~~l--r 150 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV---EEIALKLNLAGL--R 150 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch---HHHHHhcchhhh--h
Confidence 99999999999999999997763 222222 2333333346899999999999754321 111111110011 1
Q ss_pred ccccceeeeccccCcc
Q 010392 241 QCDFQAIYASGIQGKA 256 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~ 256 (512)
...+.+-.+||+++.+
T Consensus 151 dRswhIq~csals~eg 166 (185)
T KOG0074|consen 151 DRSWHIQECSALSLEG 166 (185)
T ss_pred hceEEeeeCccccccC
Confidence 1245677899999983
No 300
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.30 E-value=1.9e-11 Score=99.53 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=74.6
Q ss_pred cccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC
Q 010392 286 DGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI 363 (512)
Q Consensus 286 ~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l 363 (512)
+.||++.|.++|...+.|+++.|+|.+|.|+.||+|+++|.+... +|++|. .+..++++|.|||.|+| .++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~---~V~sI~----~~~~~~~~a~aG~~v~i~l~~i 74 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTG---EVKSVE----MHHEPLEEALPGDNVGFNVKNV 74 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEE---EEEEEE----ECCcCcCEECCCCEEEEEECCC
Confidence 468999999999999999999999999999999999999998665 899994 44568999999999999 455
Q ss_pred --CccccCCeEecCCC
Q 010392 364 --DDIQIGETIADKVS 377 (512)
Q Consensus 364 --~~~~~Gdtl~~~~~ 377 (512)
+++++||+||++++
T Consensus 75 ~~~~v~~G~vl~~~~~ 90 (91)
T cd03693 75 SKKDIKRGDVAGDSKN 90 (91)
T ss_pred CHHHcCCcCEEccCCC
Confidence 36999999998753
No 301
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=1.9e-12 Score=121.61 Aligned_cols=183 Identities=18% Similarity=0.240 Sum_probs=109.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee-----------------------eeeeccchhhhhcceeEEe
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK-----------------------ERIMDSNDLERERGITILS 142 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~-----------------------~~~~d~~~~e~~~g~ti~~ 142 (512)
.++...|+++|..|+|||||+.+|.........++-+- ..+|.......+.||....
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 44567799999999999999999987654433322111 1233334444555665444
Q ss_pred eeeEEEE-----------CCeeEEEEeCCCCCCC-h-----HHHHHHH-Hh-ccEEEEEEeCCCCCch-----hHHHHHH
Q 010392 143 KNTSITY-----------NDTKINIIDTPGHSDF-G-----GEVERIL-NM-VEGVLLVVDSVEGPMP-----QTRFVLK 198 (512)
Q Consensus 143 ~~~~~~~-----------~~~~i~liDtPG~~~~-~-----~~~~~~~-~~-~d~~llvida~~g~~~-----~~~~~l~ 198 (512)
+.....+ ...++.||||||+.+. . ......+ .. --.+++|+|......+ .......
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 4332222 1346899999999752 1 1111112 11 2458899996554332 2334455
Q ss_pred HHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC------------------CccccccceeeeccccCccCCCC
Q 010392 199 KALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA------------------TDEQCDFQAIYASGIQGKAGLSP 260 (512)
Q Consensus 199 ~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~pvi~~Sa~~g~~~~~~ 260 (512)
.+.+.++|+|++.||.|+.+..+....-.-.+.|++... ......+.++.+|+.+|.
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~----- 250 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE----- 250 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC-----
Confidence 666778999999999999887653322222222221111 111224568999999999
Q ss_pred CCcCCCchhhHHHHHHhC
Q 010392 261 DNLADDLGPLFESIMRCI 278 (512)
Q Consensus 261 ~~~~~gi~~Ll~~i~~~l 278 (512)
|+++++.++...+
T Consensus 251 -----G~ddf~~av~~~v 263 (366)
T KOG1532|consen 251 -----GFDDFFTAVDESV 263 (366)
T ss_pred -----cHHHHHHHHHHHH
Confidence 9999988887654
No 302
>PRK13768 GTPase; Provisional
Probab=99.27 E-value=3.7e-11 Score=116.99 Aligned_cols=120 Identities=22% Similarity=0.317 Sum_probs=75.2
Q ss_pred eeEEEEeCCCCCCC---hHHHHHH---HHh--ccEEEEEEeCCCCCchhHHHHHHHH-----HHcCCcEEEEEeccCCCC
Q 010392 152 TKINIIDTPGHSDF---GGEVERI---LNM--VEGVLLVVDSVEGPMPQTRFVLKKA-----LEFGHAVVVVVNKIDRPS 218 (512)
Q Consensus 152 ~~i~liDtPG~~~~---~~~~~~~---~~~--~d~~llvida~~g~~~~~~~~l~~~-----~~~~~p~ivviNK~Dl~~ 218 (512)
..+.+|||||+.++ ...+... +.. .+++++|+|+..+....+......+ ...++|+++|+||+|+..
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 37999999998763 3333333 332 7899999999876555443332222 256899999999999875
Q ss_pred CCc-hhhHhhhHH---HHHHhcC----------------CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 219 ARP-DYVINSTFE---LFIELNA----------------TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 219 ~~~-~~~~~~~~~---~~~~~~~----------------~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
... +...+.+.+ ++.++.. .......+++++|++++. |+++|++.|.+.+
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~----------gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE----------GFDELYAAIQEVF 246 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc----------CHHHHHHHHHHHc
Confidence 431 111111110 0001000 000112478999999999 9999999999998
Q ss_pred CCC
Q 010392 279 PGP 281 (512)
Q Consensus 279 p~p 281 (512)
+.-
T Consensus 247 ~~~ 249 (253)
T PRK13768 247 CGG 249 (253)
T ss_pred CCC
Confidence 764
No 303
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.26 E-value=3.7e-11 Score=96.11 Aligned_cols=79 Identities=22% Similarity=0.455 Sum_probs=70.1
Q ss_pred cceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC-
Q 010392 288 ALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID- 364 (512)
Q Consensus 288 p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~- 364 (512)
||++.|.+++..+ .|+++.|||.+|++++||+|.+.|.+... +|++|. .+..++++|.|||.+++ .+++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~---~V~si~----~~~~~~~~a~aGd~v~~~l~~~~~ 72 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESV---EVKSIY----VDDEEVDYAVAGENVRLKLKGIDE 72 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEE---EEEEEE----ECCeECCEECCCCEEEEEECCCCH
Confidence 6899999999988 99999999999999999999999998765 899994 45688999999999997 5554
Q ss_pred -ccccCCeEec
Q 010392 365 -DIQIGETIAD 374 (512)
Q Consensus 365 -~~~~Gdtl~~ 374 (512)
++++||+|++
T Consensus 73 ~~v~~G~vl~~ 83 (83)
T cd03698 73 EDISPGDVLCS 83 (83)
T ss_pred HHCCCCCEEeC
Confidence 7999999984
No 304
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.25 E-value=6.5e-11 Score=112.70 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=92.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCCChHH-
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFGGE- 168 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~- 168 (512)
||+++|..++||||..+.+..+..+... . .-|.|+......+.. ....+++||+||+.++...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~--------------~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-L--------------RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-G--------------G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-c--------------ccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc
Confidence 6899999999999999999876443211 1 115566666666654 4569999999999887654
Q ss_pred ----HHHHHHhccEEEEEEeCCCCCchhH----HHHHHHHHHc--CCcEEEEEeccCCCCCCc-hhhHhhh----HHHHH
Q 010392 169 ----VERILNMVEGVLLVVDSVEGPMPQT----RFVLKKALEF--GHAVVVVVNKIDRPSARP-DYVINST----FELFI 233 (512)
Q Consensus 169 ----~~~~~~~~d~~llvida~~g~~~~~----~~~l~~~~~~--~~p~ivviNK~Dl~~~~~-~~~~~~~----~~~~~ 233 (512)
....++.++++|+|+|+........ ...+..+.+. ++.+.|+++|+|+...+. .+..+++ .+...
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~ 145 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE 145 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh
Confidence 4667899999999999984322222 2344445554 467999999999975432 2223333 33333
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+.+.. .+.++.+|-.. . .+-+.+-.++..+
T Consensus 146 ~~~~~----~~~~~~TSI~D-~----------Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 146 DLGIE----DITFFLTSIWD-E----------SLYEAWSKIVQKL 175 (232)
T ss_dssp HTT-T----SEEEEEE-TTS-T----------HHHHHHHHHHHTT
T ss_pred hcccc----ceEEEeccCcC-c----------HHHHHHHHHHHHH
Confidence 22221 35567777543 2 4555555555544
No 305
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.24 E-value=1.9e-10 Score=115.25 Aligned_cols=177 Identities=17% Similarity=0.144 Sum_probs=101.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccce-e----------eeeeccchhh---hhcceeEEeeeeE-----
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV-K----------ERIMDSNDLE---RERGITILSKNTS----- 146 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~-~----------~~~~d~~~~e---~~~g~ti~~~~~~----- 146 (512)
......|+|+|.+|+|||||+++|............+ . ....|....+ ...++-+......
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 4466789999999999999999986543211110000 0 0111211111 1112112111111
Q ss_pred -----------EEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccC
Q 010392 147 -----------ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKID 215 (512)
Q Consensus 147 -----------~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~D 215 (512)
+...+..+.|+||+|...-... ....+|.+++|++...|...+.... ......-++|+||+|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaD 205 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKAD 205 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhc
Confidence 1223568999999998743322 5778999999987444433332210 011223489999999
Q ss_pred CCCCC-chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 216 RPSAR-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 216 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+.... ......++...+.-..........||+++||++|. |+++|++.|.++++
T Consensus 206 l~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~----------GIdeL~~~I~~~~~ 260 (332)
T PRK09435 206 GDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGE----------GIDEIWQAIEDHRA 260 (332)
T ss_pred ccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 87532 23444555554432211111223589999999999 99999999998865
No 306
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.23 E-value=6.9e-11 Score=119.13 Aligned_cols=171 Identities=16% Similarity=0.168 Sum_probs=94.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeE-EeeeeEEEECC-eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITI-LSKNTSITYND-TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti-~~~~~~~~~~~-~~i~liDtPG~~~~ 165 (512)
...+|+|+|.+|+|||||||+|.+-.........+ |++- ......+.... -.+.+||.||...-
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~t--------------Gv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPT--------------GVVETTMEPTPYPHPKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--S--------------SSHSCCTS-EEEE-SS-TTEEEEEE--GGGS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCC--------------CCCcCCCCCeeCCCCCCCCCeEEeCCCCCCC
Confidence 45799999999999999999997543322111111 2211 11122233333 36999999997644
Q ss_pred hHHHHHHHH-----hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC--C--------CCchhhHhhhHH
Q 010392 166 GGEVERILN-----MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP--S--------ARPDYVINSTFE 230 (512)
Q Consensus 166 ~~~~~~~~~-----~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~--~--------~~~~~~~~~~~~ 230 (512)
......|+. ..|.+|++.+ .........+...+..+++|+.+|-+|+|.. . -+.++.++++++
T Consensus 100 ~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~ 177 (376)
T PF05049_consen 100 NFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRE 177 (376)
T ss_dssp S--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHH
T ss_pred CCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHH
Confidence 334444544 4577666544 3455677788899999999999999999962 1 122445566655
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
...+........+.+||.+|+..-. ..++..|.+.+.+.+|..+
T Consensus 178 ~c~~~L~k~gv~~P~VFLVS~~dl~--------~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 178 NCLENLQKAGVSEPQVFLVSSFDLS--------KYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHHHHCTT-SS--EEEB-TTTTT--------STTHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHcCCCcCceEEEeCCCcc--------cCChHHHHHHHHHHhHHHH
Confidence 5433222222234578999987533 1267889999999998865
No 307
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.22 E-value=1.5e-10 Score=116.07 Aligned_cols=177 Identities=16% Similarity=0.210 Sum_probs=106.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc-cceeeeeeccchhhhhcc---eeEEeee---eEEEEC-----Cee
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN-QTVKERIMDSNDLERERG---ITILSKN---TSITYN-----DTK 153 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~-~~~~~~~~d~~~~e~~~g---~ti~~~~---~~~~~~-----~~~ 153 (512)
...-.-|+++|+.++|||||+|+|.+....+.-. .....+..|..+... .| +|.+... ..++.. ..+
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~-~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSA-AGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCC-CCCCcccCCCccccCcceEEeccCCCccc
Confidence 3345679999999999999999999873322211 000111222222221 25 3333333 122221 257
Q ss_pred EEEEeCCCCCCCh-------HH----------------------HHHHHH-hccEEEEEE-eCC------CCCchhHHHH
Q 010392 154 INIIDTPGHSDFG-------GE----------------------VERILN-MVEGVLLVV-DSV------EGPMPQTRFV 196 (512)
Q Consensus 154 i~liDtPG~~~~~-------~~----------------------~~~~~~-~~d~~llvi-da~------~g~~~~~~~~ 196 (512)
+.++||+|+.+-. .. +...+. .+|..|+|. |++ ++......++
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 9999999985411 11 445566 789999999 875 4566777889
Q ss_pred HHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 197 LKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 197 l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
+..+++.++|+++++||.|-...+.....+++.+.+ ++|++++|+..-. ...+..+|+.++-
T Consensus 173 i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky----------~vpvl~v~c~~l~--------~~DI~~il~~vL~ 234 (492)
T TIGR02836 173 IEELKELNKPFIILLNSTHPYHPETEALRQELEEKY----------DVPVLAMDVESMR--------ESDILSVLEEVLY 234 (492)
T ss_pred HHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHh----------CCceEEEEHHHcC--------HHHHHHHHHHHHh
Confidence 999999999999999999943222222233333222 3567777765332 1155666777666
Q ss_pred hCCCC
Q 010392 277 CIPGP 281 (512)
Q Consensus 277 ~lp~p 281 (512)
.+|-.
T Consensus 235 EFPv~ 239 (492)
T TIGR02836 235 EFPIL 239 (492)
T ss_pred cCCce
Confidence 66654
No 308
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=5.6e-11 Score=103.52 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=101.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
++.-+++++|-.|+|||||++.|-.+...... .|.......+...+.+++-+|..||..-.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-------------------PTlHPTSE~l~Ig~m~ftt~DLGGH~qAr 78 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-------------------PTLHPTSEELSIGGMTFTTFDLGGHLQAR 78 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccC-------------------CCcCCChHHheecCceEEEEccccHHHHH
Confidence 34667999999999999999999665443221 13344445566778899999999999888
Q ss_pred HHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc--
Q 010392 167 GEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD-- 239 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~-- 239 (512)
.-+..++..+|++++++|+-+ ......+..++.+.. ..+|+++.+||+|.+.+-.+....-...++...+...
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v 158 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKV 158 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccc
Confidence 899999999999999999776 333444444443332 4689999999999987653433333333333222111
Q ss_pred -----cccccceeeeccccCc
Q 010392 240 -----EQCDFQAIYASGIQGK 255 (512)
Q Consensus 240 -----~~~~~pvi~~Sa~~g~ 255 (512)
....+.++.||...+.
T Consensus 159 ~~~~~~~rp~evfmcsi~~~~ 179 (193)
T KOG0077|consen 159 NLTDSNVRPLEVFMCSIVRKM 179 (193)
T ss_pred cccCCCCCeEEEEEEEEEccC
Confidence 0112346778877666
No 309
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.20 E-value=3.7e-10 Score=116.38 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=54.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE---------------------
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT--------------------- 148 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~--------------------- 148 (512)
.+|+++|.+|+|||||+|+|+.........+. .|+......+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f----------------~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~ 65 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPF----------------TTIDPNVGVAYVRVECPCKELGVKCNPRNGKC 65 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCC----------------cceeeeeeeeeeccCCchhhhhhhhccccccc
Confidence 47999999999999999999976554322221 12222221111
Q ss_pred ---ECCeeEEEEeCCCCCC----C---hHHHHHHHHhccEEEEEEeCC
Q 010392 149 ---YNDTKINIIDTPGHSD----F---GGEVERILNMVEGVLLVVDSV 186 (512)
Q Consensus 149 ---~~~~~i~liDtPG~~~----~---~~~~~~~~~~~d~~llvida~ 186 (512)
+....++||||||..+ . .......++.+|++++|+|+.
T Consensus 66 ~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 66 IDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 1224689999999643 2 234555689999999999986
No 310
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.15 E-value=1.1e-10 Score=96.99 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=93.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC----CC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS----DF 165 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~----~~ 165 (512)
.+++++|.+|+|||||.++|-+.......- -.++|++. -.|||||-. .+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKT-------------------------QAve~~d~--~~IDTPGEy~~~~~~ 54 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKT-------------------------QAVEFNDK--GDIDTPGEYFEHPRW 54 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccc-------------------------ceeeccCc--cccCCchhhhhhhHH
Confidence 579999999999999999997764432211 12344332 369999943 23
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
-.........+|.+++|-.++++...--- ..+.-...|+|-|++|.|+.+ +.-++..+..+.+.+.. |
T Consensus 55 Y~aL~tt~~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~------~ 122 (148)
T COG4917 55 YHALITTLQDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLAE---DADISLVKRWLREAGAE------P 122 (148)
T ss_pred HHHHHHHhhccceeeeeecccCccccCCc---ccccccccceEEEEecccccc---hHhHHHHHHHHHHcCCc------c
Confidence 33344445668889999888875322111 112223467999999999974 33456666777776643 5
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
+|.+|+..+. |+++|++.+..
T Consensus 123 IF~~s~~d~~----------gv~~l~~~L~~ 143 (148)
T COG4917 123 IFETSAVDNQ----------GVEELVDYLAS 143 (148)
T ss_pred eEEEeccCcc----------cHHHHHHHHHh
Confidence 9999999988 99999988764
No 311
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.14 E-value=7.3e-10 Score=104.79 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=96.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeee---eccchhhhhcceeE-Eeeee---------------E
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERI---MDSNDLERERGITI-LSKNT---------------S 146 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~---~d~~~~e~~~g~ti-~~~~~---------------~ 146 (512)
...+++|+++|+.|+|||||+++++...........+.... .|....+ ..|..+ ..... .
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 44799999999999999999999997633211111111111 1222222 122211 00000 0
Q ss_pred EEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHh
Q 010392 147 ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVIN 226 (512)
Q Consensus 147 ~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~ 226 (512)
....+..+.|++|.|...... .+....+..+.|+|+..+..... ......+.|.++++||+|+.+... ....
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~~-~~~~ 169 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAVG-FDVE 169 (207)
T ss_pred hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccch-hhHH
Confidence 111234789999999321111 11123456678899876543222 122234578899999999975321 1123
Q ss_pred hhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 227 STFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++.+.+..+. ...|++++||++|. |++++++++.++.
T Consensus 170 ~~~~~l~~~~-----~~~~i~~~Sa~~g~----------gv~~l~~~i~~~~ 206 (207)
T TIGR00073 170 KMKADAKKIN-----PEAEIILMSLKTGE----------GLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHhC-----CCCCEEEEECCCCC----------CHHHHHHHHHHhh
Confidence 3444443332 13579999999999 9999999988753
No 312
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.12 E-value=4.3e-10 Score=89.69 Aligned_cols=78 Identities=19% Similarity=0.399 Sum_probs=67.0
Q ss_pred cceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--
Q 010392 288 ALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI-- 363 (512)
Q Consensus 288 p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l-- 363 (512)
||++.|.+++... |+++.|||.+|++++||+|++.|.+... +|++|. .+..++++|.|||.+++ .++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~---~V~si~----~~~~~~~~a~aGd~v~l~l~~i~~ 71 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQV---EVLSIY----NEDVEVRYARPGENVRLRLKGIEE 71 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEE---EEEEEE----ECCEECCEECCCCEEEEEecCCCH
Confidence 6899999999753 8999999999999999999999998765 899994 34578999999999999 444
Q ss_pred CccccCCeEec
Q 010392 364 DDIQIGETIAD 374 (512)
Q Consensus 364 ~~~~~Gdtl~~ 374 (512)
+++++||+|++
T Consensus 72 ~~v~~G~vl~~ 82 (82)
T cd04089 72 EDISPGFVLCS 82 (82)
T ss_pred HHCCCCCEEeC
Confidence 36899999974
No 313
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.12 E-value=6.8e-10 Score=106.39 Aligned_cols=132 Identities=15% Similarity=0.228 Sum_probs=83.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee---------------e--------eeeccchhh------hh---
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK---------------E--------RIMDSNDLE------RE--- 135 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~---------------~--------~~~d~~~~e------~~--- 135 (512)
..+.|+++|+.|+||||++++|++..+.....+.+. . .+.|..... .+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 567899999999999999999998642211111110 0 011111111 00
Q ss_pred -cceeEEeeeeEE--EECC-eeEEEEeCCCCCCC-------------hHHHHHHHH-hccEEEEEEeCCCCCchhH-HHH
Q 010392 136 -RGITILSKNTSI--TYND-TKINIIDTPGHSDF-------------GGEVERILN-MVEGVLLVVDSVEGPMPQT-RFV 196 (512)
Q Consensus 136 -~g~ti~~~~~~~--~~~~-~~i~liDtPG~~~~-------------~~~~~~~~~-~~d~~llvida~~g~~~~~-~~~ 196 (512)
.+..+......+ ..++ ..++|+||||.... ...+..++. ..+.+|+|+|+..+...+. .++
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 011122222222 2222 47999999998632 123455666 3468999999998887776 577
Q ss_pred HHHHHHcCCcEEEEEeccCCCCC
Q 010392 197 LKKALEFGHAVVVVVNKIDRPSA 219 (512)
Q Consensus 197 l~~~~~~~~p~ivviNK~Dl~~~ 219 (512)
.+.+...+.|+++|+||+|....
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCc
Confidence 78888889999999999998754
No 314
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.10 E-value=7.1e-11 Score=92.34 Aligned_cols=71 Identities=34% Similarity=0.611 Sum_probs=62.8
Q ss_pred cEEEEEEEeecccCCCCEEEEcc--CCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCc-cccCCeEe
Q 010392 303 GRIAIGRLHAGVLRKGMEVRVCT--SEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD-IQIGETIA 373 (512)
Q Consensus 303 G~v~~grV~sG~l~~g~~v~~~~--~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~-~~~Gdtl~ 373 (512)
|+++++||++|+|++||+|++.+ ++++....+|++|+.+++...+++..+.||+++++.++++ +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999966 3333234599999999999999999999999999999999 89999996
No 315
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.09 E-value=1.2e-10 Score=112.12 Aligned_cols=113 Identities=23% Similarity=0.196 Sum_probs=57.9
Q ss_pred eEEEEeCCCCCCChHHHHHHH--------HhccEEEEEEeCCCCCch-----hHHHHHHHHHHcCCcEEEEEeccCCCCC
Q 010392 153 KINIIDTPGHSDFGGEVERIL--------NMVEGVLLVVDSVEGPMP-----QTRFVLKKALEFGHAVVVVVNKIDRPSA 219 (512)
Q Consensus 153 ~i~liDtPG~~~~~~~~~~~~--------~~~d~~llvida~~g~~~-----~~~~~l~~~~~~~~p~ivviNK~Dl~~~ 219 (512)
.+.|+|||||.++...+.... ...-++++++|+..-... .....+....+.++|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999988654333332 223468999997642221 1122233345578999999999999863
Q ss_pred CchhhHhh-----------------hHHHHHHhcCCcccccc-ceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 220 RPDYVINS-----------------TFELFIELNATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 220 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
..+..++. +.+.+.++. . +...+ +++++|+.++. |+..|+..+.+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l-~-~~~~~~~f~pls~~~~~----------~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELL-D-DFGLVIRFIPLSSKDGE----------GMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHC-C-CCSSS---EE-BTTTTT----------THHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-h-hcCCCceEEEEECCChH----------HHHHHHHHHHHH
Confidence 21111111 111111111 1 11223 78999999999 999998887654
No 316
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.08 E-value=8.4e-10 Score=87.67 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=68.0
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCCcc
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGIDDI 366 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~~~ 366 (512)
|++.|.+++.....|+.+.|||.+|.+++||+|++.|.+... +|++|. .+..++++|.|||.++| .+.+++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~---~V~si~----~~~~~~~~a~aGd~v~l~l~~~~~i 73 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTS---RVKSIE----TFDGELDEAGAGESVTLTLEDEIDV 73 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeE---EEEEEE----ECCcEeCEEcCCCEEEEEECCcccc
Confidence 578899999877778889999999999999999999998765 899994 45678999999999998 345579
Q ss_pred ccCCeEec
Q 010392 367 QIGETIAD 374 (512)
Q Consensus 367 ~~Gdtl~~ 374 (512)
++|++||.
T Consensus 74 ~~G~vl~~ 81 (81)
T cd03695 74 SRGDVIVA 81 (81)
T ss_pred CCCCEEeC
Confidence 99999973
No 317
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2.3e-10 Score=113.61 Aligned_cols=229 Identities=23% Similarity=0.240 Sum_probs=151.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCc---------------CccceeeeeeccchhhhhcceeEEeeeeEEEECC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFR---------------DNQTVKERIMDSNDLERERGITILSKNTSITYND 151 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~---------------~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 151 (512)
...+||+++||.++||||.....+ +.+. .......|.+|....|++++++|......+....
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~~~~---g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k 81 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTGYKC---GGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 81 (391)
T ss_pred ccccceEEEEeeeeeeeEEEeeec---ccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccccee
Confidence 457899999999999999877322 1111 1112227899999999999999888888888888
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCC-cEEEEEeccCCCCCCch-
Q 010392 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGH-AVVVVVNKIDRPSARPD- 222 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-------~~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~~~- 222 (512)
+-++++|.|||.+|...+.....++|.+++++.+..| ...|++++......+++ ++++.+||+|-....+.
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~ 161 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 161 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccc
Confidence 8999999999999998888888999999999987332 34688898888888874 78999999997542211
Q ss_pred hhHhhhHHHHHHhcCCccccccceeeecc-ccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCC
Q 010392 223 YVINSTFELFIELNATDEQCDFQAIYASG-IQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEH 301 (512)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa-~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~ 301 (512)
....++ .+ .....- +.|. ..... ..+++...+
T Consensus 162 ~r~~ei---~k------------~~~~~~~~~g~----------n~~~~----------------------~~~~~~~~g 194 (391)
T KOG0052|consen 162 ARYEEI---KK------------EVSSYIKKIGY----------NPAAV----------------------LQDVYKIGG 194 (391)
T ss_pred cchhhh---he------------eeeeeeecccc----------CChhh----------------------hccceeecc
Confidence 111111 00 000000 0111 00010 111222222
Q ss_pred CcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc--c--CCccccCCeEecCCC
Q 010392 302 KGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--G--IDDIQIGETIADKVS 377 (512)
Q Consensus 302 ~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--~--l~~~~~Gdtl~~~~~ 377 (512)
.| +..|.++.++.+...+..... ++...- .+++.-.++.+|+.++.. + ..+++.|+++.+..+
T Consensus 195 ~~------~~t~iie~~~~v~~~~~~~~~---~vk~~~----~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~ 261 (391)
T KOG0052|consen 195 IG------VETGISEPGMDVTFAPSGVTT---EVKSVK----VHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKN 261 (391)
T ss_pred ee------eeeeeccCccceecccccccc---ccccEE----EEeccCccCCCcceeeeecccCccCcccccceeccccc
Confidence 33 788899999988887776533 454442 223333478899999983 3 357888998877654
Q ss_pred C
Q 010392 378 G 378 (512)
Q Consensus 378 ~ 378 (512)
.
T Consensus 262 ~ 262 (391)
T KOG0052|consen 262 D 262 (391)
T ss_pred C
Confidence 3
No 318
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.07 E-value=5e-10 Score=113.46 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=101.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
-.+.++++++|.+|+|||||++.++........+.++ |-..-..++.++-.+++++||||.-|-
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFT----------------TksL~vGH~dykYlrwQViDTPGILD~ 228 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFT----------------TKLLLVGHLDYKYLRWQVIDTPGILDR 228 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccc----------------cchhhhhhhhhheeeeeecCCccccCc
Confidence 3467899999999999999999998876665555443 444556677787789999999998653
Q ss_pred hHH------HHHHHHhc---cEEEEEEeCCC--CCc-hhHHHHHHHHHHc--CCcEEEEEeccCCCC-CCchhhHhhhHH
Q 010392 166 GGE------VERILNMV---EGVLLVVDSVE--GPM-PQTRFVLKKALEF--GHAVVVVVNKIDRPS-ARPDYVINSTFE 230 (512)
Q Consensus 166 ~~~------~~~~~~~~---d~~llvida~~--g~~-~~~~~~l~~~~~~--~~p~ivviNK~Dl~~-~~~~~~~~~~~~ 230 (512)
--+ +......| .++|++.|-++ |.. .+...++..++.. +.|+|+|+||+|... .+..+..+++.+
T Consensus 229 plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~ 308 (620)
T KOG1490|consen 229 PEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQ 308 (620)
T ss_pred chhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHH
Confidence 222 22222222 35899999665 322 2223344445443 789999999999874 333333334444
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSP 260 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~ 260 (512)
.+.+. ..++|+..|+.+..|+.+.
T Consensus 309 ~~~~~------~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 309 TIIDD------GNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred HHHhc------cCceEEEecccchhceeeH
Confidence 33322 2478999999999976654
No 319
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.07 E-value=4.9e-09 Score=103.12 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=74.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|.+|+|||||+|+|++........-. +.+.........+.+.++++|||||..+..
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~---------------s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~ 100 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ---------------SEGLRPMMVSRTRAGFTLNIIDTPGLIEGG 100 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC---------------CcceeEEEEEEEECCeEEEEEECCCCCchH
Confidence 35678999999999999999999986543221100 112222223344678899999999998753
Q ss_pred HH---HHHHHH------hccEEEEEEeCCC-CCchhHHHHHHHHHHc-C----CcEEEEEeccCCCC
Q 010392 167 GE---VERILN------MVEGVLLVVDSVE-GPMPQTRFVLKKALEF-G----HAVVVVVNKIDRPS 218 (512)
Q Consensus 167 ~~---~~~~~~------~~d~~llvida~~-g~~~~~~~~l~~~~~~-~----~p~ivviNK~Dl~~ 218 (512)
.. ....++ ..|++|+|...+. .....+...++.+... | .+.||++|+.|...
T Consensus 101 ~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 101 YINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 22 222222 4788999955332 2333445555555443 2 47999999999763
No 320
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=4.1e-09 Score=107.68 Aligned_cols=212 Identities=21% Similarity=0.197 Sum_probs=127.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...-|+|+|++|+|||||+.+|........- .+ +.-....+..+..+++|+.||. | ..
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti-------------~~------i~GPiTvvsgK~RRiTflEcp~--D-l~ 125 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTI-------------DE------IRGPITVVSGKTRRITFLECPS--D-LH 125 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhh-------------hc------cCCceEEeecceeEEEEEeChH--H-HH
Confidence 3456789999999999999999865321110 00 1111223455678999999993 3 34
Q ss_pred HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
.+......+|.+||+||+..|....|.+++..+..+|.| ++-|++..|+... ...+..++..++.--...-.-...+
T Consensus 126 ~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkhRfWtEiyqGaKl 203 (1077)
T COG5192 126 QMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKHRFWTEIYQGAKL 203 (1077)
T ss_pred HHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHhhhHHHHHcCCceE
Confidence 556677889999999999999999999999999999998 5669999999753 2334444433221111111113457
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEE---------EeeeCCCc--EEEEEEEee-cc
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATN---------LEYDEHKG--RIAIGRLHA-GV 314 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~---------~~~~~~~G--~v~~grV~s-G~ 314 (512)
|+.|...+--.... .|..|-..|.-.---|....+....++... ++..+.+| .-+||.+.. |-
T Consensus 204 FylsgV~nGRYpDr-----eilnLsRfisVMKfRPl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt~L 278 (1077)
T COG5192 204 FYLSGVENGRYPDR-----EILNLSRFISVMKFRPLEWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTGL 278 (1077)
T ss_pred EEecccccCCCCCH-----HHHHHHHHHhhhcccccccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCCCC
Confidence 88887654211110 112222222111112322333322333222 23344555 336788887 77
Q ss_pred cCCCCEEEEccCCC
Q 010392 315 LRKGMEVRVCTSED 328 (512)
Q Consensus 315 l~~g~~v~~~~~~~ 328 (512)
.+...+|++.+.|.
T Consensus 279 p~~d~~vHIpGvGD 292 (1077)
T COG5192 279 PRKDMEVHIPGVGD 292 (1077)
T ss_pred CCCCceEeccCccc
Confidence 77888898887764
No 321
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.06 E-value=1.3e-09 Score=87.96 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=68.7
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCC-CceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE-DSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI-- 363 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~-~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l-- 363 (512)
|.+.|.++|..++.|+++.|||.+|.+++||++++.|.+ ......+|++|. .++.++++|.|||.+++ .++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~----~~~~~~~~a~aGd~v~l~l~~i~~ 76 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIH----RNRSPVRVVRAGQSASLALKKIDR 76 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEE----ECCeECCEECCCCEEEEEEcCCCH
Confidence 568899999999999999999999999999999999984 222345899994 45778999999999999 444
Q ss_pred CccccCCeEec
Q 010392 364 DDIQIGETIAD 374 (512)
Q Consensus 364 ~~~~~Gdtl~~ 374 (512)
+++++|++||.
T Consensus 77 ~~i~~G~vl~~ 87 (87)
T cd03694 77 SLLRKGMVLVS 87 (87)
T ss_pred HHcCCccEEeC
Confidence 47999999974
No 322
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.06 E-value=3.9e-09 Score=105.51 Aligned_cols=112 Identities=18% Similarity=0.165 Sum_probs=67.1
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhh-Hhhh
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYV-INST 228 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~-~~~~ 228 (512)
.++.+.|+||+|.... ....+..+|.++++.+...+.. .......+ .++|.++|+||+|+........ ...+
T Consensus 125 ~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~e--l~~~~~~l--~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 197 (300)
T TIGR00750 125 AGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDD--LQGIKAGL--MEIADIYVVNKADGEGATNVTIARLML 197 (300)
T ss_pred CCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHH--HHHHHHHH--hhhccEEEEEcccccchhHHHHHHHHH
Confidence 3678999999997532 2235777899888865443321 11111212 3678899999999975431111 1111
Q ss_pred HHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
...+..+.........|++++||++|. |+.+|++.|.+++
T Consensus 198 ~~~l~~l~~~~~~~~~~v~~iSA~~g~----------Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 198 ALALEEIRRREDGWRPPVLTTSAVEGR----------GIDELWDAIEEHK 237 (300)
T ss_pred HHHHhhccccccCCCCCEEEEEccCCC----------CHHHHHHHHHHHH
Confidence 111111111111223479999999999 9999999988764
No 323
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.05 E-value=1.2e-09 Score=88.12 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=68.0
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--C
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--D 364 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~ 364 (512)
|++.|.+++..++.|+++.|+|.+|+++.||+|.+.|.+.. ...+|++|. .+..++++|.|||.|++ .++ +
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~-~~~~V~si~----~~~~~~~~a~~G~~v~l~l~~~~~~ 75 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGET-LKTTVTGIE----MFRKTLDEAEAGDNVGVLLRGVKRE 75 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCC-ceEEEEEEE----ECCcCCCEECCCCEEEEEECCCCHH
Confidence 57889999998999999999999999999999999886321 123899984 45678999999999999 445 3
Q ss_pred ccccCCeEecC
Q 010392 365 DIQIGETIADK 375 (512)
Q Consensus 365 ~~~~Gdtl~~~ 375 (512)
++.+|++|+++
T Consensus 76 ~v~rG~vl~~~ 86 (87)
T cd03697 76 DVERGMVLAKP 86 (87)
T ss_pred HcCCccEEecC
Confidence 68999999975
No 324
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.04 E-value=9.8e-10 Score=100.08 Aligned_cols=64 Identities=25% Similarity=0.320 Sum_probs=47.3
Q ss_pred CeeEEEEeCCCCCC----ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHH-cCCcEEEEEecc
Q 010392 151 DTKINIIDTPGHSD----FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE-FGHAVVVVVNKI 214 (512)
Q Consensus 151 ~~~i~liDtPG~~~----~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~-~~~p~ivviNK~ 214 (512)
...+.|+||||..+ ....+..++..+|++|+|+++...........+..... ....+++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 34699999999854 22567888899999999999998766665555554444 455689999985
No 325
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.03 E-value=1.4e-09 Score=103.23 Aligned_cols=172 Identities=24% Similarity=0.291 Sum_probs=97.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcC--------cc-cee--eeeeccchh---hhhcceeEEeeeeEE----
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD--------NQ-TVK--ERIMDSNDL---ERERGITILSKNTSI---- 147 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~--------~~-~~~--~~~~d~~~~---e~~~g~ti~~~~~~~---- 147 (512)
..+...|+|.|++|+|||||+++|......... +. +.. ...-|.... ....++-|.+....-
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 345678999999999999999999754221100 00 000 112222221 122333333221110
Q ss_pred ------------EECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHH--HHHHHHHcCCcEEEEEec
Q 010392 148 ------------TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRF--VLKKALEFGHAVVVVVNK 213 (512)
Q Consensus 148 ------------~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~--~l~~~~~~~~p~ivviNK 213 (512)
+.-++.+.|+.|.|..... ......+|.+++|+-...|...|..+ .++ +.-++|+||
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------iaDi~vVNK 176 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIME------IADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH------H-SEEEEE-
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhh------hccEEEEeC
Confidence 1125689999999865332 22467899999999877665555432 222 255999999
Q ss_pred cCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 214 IDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 214 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+|+..+ +....+++..+.-..........||+.+||.+|. |+++|.+.|.++.
T Consensus 177 aD~~gA--~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~----------Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 177 ADRPGA--DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGE----------GIDELWEAIDEHR 229 (266)
T ss_dssp -SHHHH--HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred CChHHH--HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCC----------CHHHHHHHHHHHH
Confidence 997654 3555666655533222233445799999999999 9999999988753
No 326
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.01 E-value=1.7e-09 Score=86.53 Aligned_cols=79 Identities=18% Similarity=0.358 Sum_probs=68.1
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--C
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--D 364 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~ 364 (512)
|++.|.+++..++.|.++.|||.+|++++||++.+.|.+... +|++|. .+..++++|.|||.+++ .++ +
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~---~V~sI~----~~~~~~~~a~aGd~v~i~l~~~~~~ 73 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEET---RVRSIQ----VHGKDVEEAKAGDRVALNLTGVDAK 73 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceE---EEEEEE----ECCcCcCEEcCCCEEEEEEcCCCHH
Confidence 578899999999999999999999999999999999987654 899994 45678999999999999 344 4
Q ss_pred ccccCCeEec
Q 010392 365 DIQIGETIAD 374 (512)
Q Consensus 365 ~~~~Gdtl~~ 374 (512)
++++||+|+.
T Consensus 74 ~i~~G~vl~~ 83 (83)
T cd03696 74 DLERGDVLSS 83 (83)
T ss_pred HcCCccEEcC
Confidence 7899999873
No 327
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=8e-10 Score=98.56 Aligned_cols=146 Identities=15% Similarity=0.120 Sum_probs=100.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
..++++++|..|.||||++++.+...+...+..++ |.........-..+..+++.|||.|++.+..
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~--------------Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg 74 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATL--------------GVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG 74 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcc--------------eeEEeeeeeecccCcEEEEeeecccceeecc
Confidence 47899999999999999999999988877666665 5444443333333347899999999999988
Q ss_pred HHHHHHHhccEEEEEEeCCCCCchhH-HHHHHHHHH--cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~~~-~~~l~~~~~--~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
....++-...++++++|....+.-+. ..|.+.+.. .++|+++++||.|..... +...-..+ ....+.
T Consensus 75 lrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~---~k~k~v~~-------~rkknl 144 (216)
T KOG0096|consen 75 LRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK---VKAKPVSF-------HRKKNL 144 (216)
T ss_pred cccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc---ccccccee-------eecccc
Confidence 88888888899999999776543322 233333322 258999999999964321 11100000 112245
Q ss_pred ceeeeccccCccC
Q 010392 245 QAIYASGIQGKAG 257 (512)
Q Consensus 245 pvi~~Sa~~g~~~ 257 (512)
.++++||+++.|.
T Consensus 145 ~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 145 QYYEISAKSNYNF 157 (216)
T ss_pred eeEEeeccccccc
Confidence 6899999999843
No 328
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.00 E-value=7.4e-10 Score=95.34 Aligned_cols=163 Identities=13% Similarity=0.163 Sum_probs=112.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
-..+|+++|+...|||||+-.+.++.....+. +..|+...-....+......+.|||..|+++|..
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~--------------q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n 84 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYT--------------QTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN 84 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHH--------------HHhCccceeeEEEecceEEEEEEEecCCcHhhhc
Confidence 35789999999999999999988765542222 2335555444455555566789999999999988
Q ss_pred HHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHcCCc--EEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEFGHA--VVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~~~p--~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
...-+...+-++++++|-+.. -....++|.++++..+.. -|+|++|.|+.-.-+.+...++......+ .+.++.
T Consensus 85 ~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~Y---Ak~mnA 161 (205)
T KOG1673|consen 85 MLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKY---AKVMNA 161 (205)
T ss_pred cCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHH---HHHhCC
Confidence 888888888889999996654 445667888999988742 36789999975322222333332221111 112344
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
+.|++|+.+.. +++.++..++..
T Consensus 162 sL~F~Sts~sI----------Nv~KIFK~vlAk 184 (205)
T KOG1673|consen 162 SLFFCSTSHSI----------NVQKIFKIVLAK 184 (205)
T ss_pred cEEEeeccccc----------cHHHHHHHHHHH
Confidence 68999999998 778777766654
No 329
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.00 E-value=1.9e-09 Score=102.10 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=109.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC---
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH--- 162 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~--- 162 (512)
....+.+++.|.+|+|||+|+|.++........... +.|-|...+...+ +..+.++|.||+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~-------------K~g~Tq~in~f~v---~~~~~~vDlPG~~~a 196 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS-------------KNGKTQAINHFHV---GKSWYEVDLPGYGRA 196 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC-------------CCccceeeeeeec---cceEEEEecCCcccc
Confidence 455678999999999999999999875332111100 2244444443332 568999999993
Q ss_pred -------CCChHHHHHHHHhcc---EEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC---chhhHhhhH
Q 010392 163 -------SDFGGEVERILNMVE---GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR---PDYVINSTF 229 (512)
Q Consensus 163 -------~~~~~~~~~~~~~~d---~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~---~~~~~~~~~ 229 (512)
.|+...+..++..-+ -+.+++|++-+++.-+...+.++.+.++|..+|+||||....- .......+.
T Consensus 197 ~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~ 276 (320)
T KOG2486|consen 197 GYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIK 276 (320)
T ss_pred cCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccce
Confidence 245566666654432 3788899999999999999999999999999999999975321 111222233
Q ss_pred HHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHH
Q 010392 230 ELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFES 273 (512)
Q Consensus 230 ~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~ 273 (512)
..|..+...--....|++++|+.++. |+..|+-.
T Consensus 277 ~~f~~l~~~~f~~~~Pw~~~Ssvt~~----------Grd~Ll~~ 310 (320)
T KOG2486|consen 277 INFQGLIRGVFLVDLPWIYVSSVTSL----------GRDLLLLH 310 (320)
T ss_pred eehhhccccceeccCCceeeeccccc----------Cceeeeee
Confidence 33333333333345788999999998 77666543
No 330
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.97 E-value=3.2e-09 Score=109.80 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=107.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|..|+||||||-+|+...+...-+.... -++|- ..+.-......|+||+...+-...
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-------------~i~IP---advtPe~vpt~ivD~ss~~~~~~~ 72 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-------------RILIP---ADVTPENVPTSIVDTSSDSDDRLC 72 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCC-------------ccccC---CccCcCcCceEEEecccccchhHH
Confidence 45699999999999999999999887654333221 22332 222223345789999987777777
Q ss_pred HHHHHHhccEEEEEEeCCCC--CchhHHHHHHHHHHc-----CCcEEEEEeccCCCCCCch---hhHhhhHHHHHHhcCC
Q 010392 169 VERILNMVEGVLLVVDSVEG--PMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPD---YVINSTFELFIELNAT 238 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g--~~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 238 (512)
+...++.||++++++++++. +..-...|+-.+++. ++|+|+|+||+|.....-. .....+...|.++..
T Consensus 73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEt- 151 (625)
T KOG1707|consen 73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIET- 151 (625)
T ss_pred HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHH-
Confidence 78889999999999987762 233344666666654 4799999999998754322 224445555655543
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.|.|||++-. .+.+++..-.+.+-.|
T Consensus 152 -------ciecSA~~~~----------n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 152 -------CIECSALTLA----------NVSELFYYAQKAVIHP 177 (625)
T ss_pred -------HHhhhhhhhh----------hhHhhhhhhhheeecc
Confidence 5889999887 4555555555444333
No 331
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.97 E-value=2.2e-08 Score=98.72 Aligned_cols=123 Identities=22% Similarity=0.333 Sum_probs=73.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCCh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFG 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~ 166 (512)
..||+|+|.+|+|||||+|.|+.......... .+.......+..++......+.-.+ ..+++|||||+.+..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i 77 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS------IPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc------ccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc
Confidence 47899999999999999999998644322100 0001111223344444444444443 368899999987633
Q ss_pred HH------H--------HHHH-------------HhccEEEEEEeCC-CCCchhHHHHHHHHHHcCCcEEEEEeccCCCC
Q 010392 167 GE------V--------ERIL-------------NMVEGVLLVVDSV-EGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (512)
Q Consensus 167 ~~------~--------~~~~-------------~~~d~~llvida~-~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~ 218 (512)
.. + ..++ ...|++|++|+++ +++.+.+.+.++.+.+. +++|.|+.|.|...
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADTLT 156 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGGS-
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEecccccC
Confidence 11 1 1111 1258899999975 57887787777776553 78999999999875
No 332
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.95 E-value=5e-09 Score=99.45 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=74.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh---
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG--- 166 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~--- 166 (512)
.+|+++|..|+||||++|.|++.......... ...|.........+.+..+++|||||..|..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~--------------~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSA--------------KSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTT--------------SS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecccc--------------CCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 47999999999999999999987654332111 1334445555568899999999999986532
Q ss_pred ----HHHHHH----HHhccEEEEEEeCCCCCchhHHHHHHHHHHc-C----CcEEEEEeccCCCCC
Q 010392 167 ----GEVERI----LNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-G----HAVVVVVNKIDRPSA 219 (512)
Q Consensus 167 ----~~~~~~----~~~~d~~llvida~~g~~~~~~~~l~~~~~~-~----~p~ivviNK~Dl~~~ 219 (512)
.++..+ ....+++|||+... ......+..++.+.+. + ..++|+++..|....
T Consensus 67 ~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 67 EEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp HHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 122222 23468899999988 6666677777666543 3 358888998887643
No 333
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.93 E-value=2.1e-08 Score=101.30 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-----------------e
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-----------------T 152 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-----------------~ 152 (512)
.+|+++|.+|+|||||+|+|++........+ ++|+......+.+.+ .
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nyp----------------ftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYP----------------FCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccc----------------cccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 4799999999999999999988653222222 345555444444433 2
Q ss_pred eEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCC
Q 010392 153 KINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSV 186 (512)
Q Consensus 153 ~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~ 186 (512)
.+.++|+||... ........++.+|++++|||+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 589999999754 2234556678899999999985
No 334
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.93 E-value=1.1e-08 Score=95.84 Aligned_cols=105 Identities=12% Similarity=0.142 Sum_probs=64.6
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHH
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFE 230 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~ 230 (512)
+....+|+|.|..- ..... ...+|.++.|+|+.++...+.. . .......-++++||+|+.+.. ...++.+.+
T Consensus 91 ~~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~---~~qi~~ad~~~~~k~d~~~~~-~~~~~~~~~ 162 (199)
T TIGR00101 91 PLEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDKIPRK-G---GPGITRSDLLVINKIDLAPMV-GADLGVMER 162 (199)
T ss_pred CCCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhhhhhh-h---HhHhhhccEEEEEhhhccccc-cccHHHHHH
Confidence 34678999999421 11111 1236889999999876543211 1 111122348999999997421 112233333
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
..+.+.. ..+++++||++|+ |++++++++.++.
T Consensus 163 ~~~~~~~-----~~~i~~~Sa~~g~----------gi~el~~~i~~~~ 195 (199)
T TIGR00101 163 DAKKMRG-----EKPFIFTNLKTKE----------GLDTVIDWIEHYA 195 (199)
T ss_pred HHHHhCC-----CCCEEEEECCCCC----------CHHHHHHHHHhhc
Confidence 3333321 3579999999999 9999999998764
No 335
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.91 E-value=5.6e-08 Score=83.71 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=106.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc--cceeeeeeccchhhhhcceeEEeeeeEEEEC---CeeEEEEeCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN--QTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGH 162 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~--~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~~~i~liDtPG~ 162 (512)
+.-+|+++|.-++|||.+++.|++....+... ++++..+ ...++.+ ...+.|.||.|.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-----------------~~svet~rgarE~l~lyDTaGl 70 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-----------------VASVETDRGAREQLRLYDTAGL 70 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-----------------eEeeecCCChhheEEEeecccc
Confidence 45689999999999999999999987654422 2222222 1222222 246889999999
Q ss_pred CCChHHH-HHHHHhccEEEEEEeCCCCCchhHHHHHHH-HHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 163 SDFGGEV-ERILNMVEGVLLVVDSVEGPMPQTRFVLKK-ALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 163 ~~~~~~~-~~~~~~~d~~llvida~~g~~~~~~~~l~~-~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
.+...++ ..++..+|+.+||+|..+...-+..+.++. +.+. .+|++|..||.|+.+. .++..+....+..
T Consensus 71 q~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~-- 146 (198)
T KOG3883|consen 71 QGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP--REVDMDVAQIWAK-- 146 (198)
T ss_pred cCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc--hhcCHHHHHHHHh--
Confidence 8885544 456778899999999877433333333322 2222 3799999999998632 2333333333221
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccc
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGAL 289 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~ 289 (512)
. -.+..+.++|.... .+-+.+..+...+..|.....-|+
T Consensus 147 --r--Ekvkl~eVta~dR~----------sL~epf~~l~~rl~~pqskS~Fpl 185 (198)
T KOG3883|consen 147 --R--EKVKLWEVTAMDRP----------SLYEPFTYLASRLHQPQSKSTFPL 185 (198)
T ss_pred --h--hheeEEEEEeccch----------hhhhHHHHHHHhccCCcccccCcc
Confidence 1 13456788888776 677777888887777765444343
No 336
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.91 E-value=3.4e-08 Score=95.04 Aligned_cols=180 Identities=20% Similarity=0.194 Sum_probs=107.3
Q ss_pred HhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCC-----------cCccceeeeeeccchhhh---hcceeEEeeee
Q 010392 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVF-----------RDNQTVKERIMDSNDLER---ERGITILSKNT 145 (512)
Q Consensus 80 ~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~-----------~~~~~~~~~~~d~~~~e~---~~g~ti~~~~~ 145 (512)
........+...|+|.|.+|+|||||++.|....... +++-+-.....|...... ..++-+.+...
T Consensus 42 ~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~s 121 (323)
T COG1703 42 RALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPS 121 (323)
T ss_pred HHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCC
Confidence 3334445567789999999999999999997543111 111000011122111111 11222211111
Q ss_pred EE----------------EECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEE
Q 010392 146 SI----------------TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVV 209 (512)
Q Consensus 146 ~~----------------~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~iv 209 (512)
.- +-.++.+.||.|-|..... .....++|.+++|.=+.-|...|..+. --+.+--|+
T Consensus 122 rG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~ 194 (323)
T COG1703 122 RGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADII 194 (323)
T ss_pred CccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhhee
Confidence 10 1124689999999865432 124678999999987776766655432 011234589
Q ss_pred EEeccCCCCCCchhhHhhhHHHHHHhc--CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 210 VVNKIDRPSARPDYVINSTFELFIELN--ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 210 viNK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
|+||+|+.++ +....+++..+.... ........|++.+||.+|. |+.+|.+.|.++.
T Consensus 195 vINKaD~~~A--~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~----------Gi~~L~~ai~~h~ 253 (323)
T COG1703 195 VINKADRKGA--EKAARELRSALDLLREVWRENGWRPPVVTTSALEGE----------GIDELWDAIEDHR 253 (323)
T ss_pred eEeccChhhH--HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCC----------CHHHHHHHHHHHH
Confidence 9999997665 344455555544332 3344556799999999999 9999999998875
No 337
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.85 E-value=2e-08 Score=98.14 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=93.8
Q ss_pred hhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeee---eeccchhhhhccee-EEeeee-----------
Q 010392 81 SRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER---IMDSNDLERERGIT-ILSKNT----------- 145 (512)
Q Consensus 81 ~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~---~~d~~~~e~~~g~t-i~~~~~----------- 145 (512)
+..........|.|+|.+|+|||||+++++...........+... ..|.... +..|+. +.....
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI-~~~g~pvvqi~tG~~Chl~a~mv~ 174 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARI-RATGTPAIQVNTGKGCHLDAQMIA 174 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHH-HhcCCcEEEecCCCCCcCcHHHHH
Confidence 344445678889999999999999999998764322111111111 1121111 111211 111110
Q ss_pred ----EEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc
Q 010392 146 ----SITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP 221 (512)
Q Consensus 146 ----~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~ 221 (512)
.+...+..+.||++-|.--..... -+. .+.-+.+++..++.... ++.-..+..+-++|+||+|+....
T Consensus 175 ~Al~~L~~~~~d~liIEnvGnLvcPa~f--dlg-e~~~v~vlsV~eg~dkp----lKyp~~f~~ADIVVLNKiDLl~~~- 246 (290)
T PRK10463 175 DAAPRLPLDDNGILFIENVGNLVCPASF--DLG-EKHKVAVLSVTEGEDKP----LKYPHMFAAASLMLLNKVDLLPYL- 246 (290)
T ss_pred HHHHHHhhcCCcEEEEECCCCccCCCcc--chh-hceeEEEEECccccccc----hhccchhhcCcEEEEEhHHcCccc-
Confidence 011123467888888852110000 111 13345777777663211 111122356789999999997421
Q ss_pred hhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 222 DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
...++++.+.++.+.. ..+++++||++|+ |+++|+++|...
T Consensus 247 ~~dle~~~~~lr~lnp-----~a~I~~vSA~tGe----------Gld~L~~~L~~~ 287 (290)
T PRK10463 247 NFDVEKCIACAREVNP-----EIEIILISATSGE----------GMDQWLNWLETQ 287 (290)
T ss_pred HHHHHHHHHHHHhhCC-----CCcEEEEECCCCC----------CHHHHHHHHHHh
Confidence 1223344444444332 3579999999999 999999998763
No 338
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.85 E-value=1.9e-08 Score=79.27 Aligned_cols=78 Identities=32% Similarity=0.511 Sum_probs=65.8
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEcc--CCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCC--
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCT--SEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGID-- 364 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~--~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~-- 364 (512)
+.+.|++++.+++.|+++++||++|+|++||.+++.+ ..... +|.+|+... .+++++.|||++++...+
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~---~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~ 73 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKG---KVKSLKRFK----GEVDEAVAGDIVGIVLKDKD 73 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEE---EEeEeEecC----ceeceecCCCEEEEEEcccc
Confidence 4678999999999999999999999999999999988 44333 888886553 678999999999997654
Q ss_pred ccccCCeEe
Q 010392 365 DIQIGETIA 373 (512)
Q Consensus 365 ~~~~Gdtl~ 373 (512)
++++||+++
T Consensus 74 ~~~~g~~l~ 82 (83)
T cd01342 74 DIKIGDTLT 82 (83)
T ss_pred ccCCCCEec
Confidence 489999986
No 339
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.84 E-value=1.8e-08 Score=97.36 Aligned_cols=149 Identities=22% Similarity=0.211 Sum_probs=100.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-CeeEEEEeCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSD 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~i~liDtPG~~~ 164 (512)
......|+++|.+|+|||||+++|+.........-+ .|.+........+ +..+.+.||-|+..
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLF----------------ATLDpT~h~a~Lpsg~~vlltDTvGFis 238 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLF----------------ATLDPTLHSAHLPSGNFVLLTDTVGFIS 238 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhh----------------eeccchhhhccCCCCcEEEEeechhhhh
Confidence 344678999999999999999999955443322221 1344433333333 45688999999853
Q ss_pred ---------ChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHcCCc-------EEEEEeccCCCCCCchhhHhh
Q 010392 165 ---------FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGHA-------VVVVVNKIDRPSARPDYVINS 227 (512)
Q Consensus 165 ---------~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~~~p-------~ivviNK~Dl~~~~~~~~~~~ 227 (512)
|.. +......+|.+|.|+|.++.. ..|...++.-+...++| ++=|=||+|......+.
T Consensus 239 dLP~~LvaAF~A-TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~---- 313 (410)
T KOG0410|consen 239 DLPIQLVAAFQA-TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE---- 313 (410)
T ss_pred hCcHHHHHHHHH-HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc----
Confidence 222 223345689999999988854 45566778888888875 45577888865432111
Q ss_pred hHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 228 TFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 228 ~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.+. -.+++||++|. |++++++++...+.
T Consensus 314 -----------E~n---~~v~isaltgd----------gl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 -----------EKN---LDVGISALTGD----------GLEELLKAEETKVA 341 (410)
T ss_pred -----------ccC---CccccccccCc----------cHHHHHHHHHHHhh
Confidence 000 15799999999 99999998876553
No 340
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.84 E-value=5.4e-08 Score=96.23 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=88.0
Q ss_pred HhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhh-hhcceeEEeeeeEEEECCe--eEEE
Q 010392 80 KSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLE-RERGITILSKNTSITYNDT--KINI 156 (512)
Q Consensus 80 ~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e-~~~g~ti~~~~~~~~~~~~--~i~l 156 (512)
.++........+|+++|..|.|||||+|.|++....... -.|....+ .+.++.+......+.-++. .+++
T Consensus 14 ~~~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~-------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~v 86 (373)
T COG5019 14 HRKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDET-------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTV 86 (373)
T ss_pred HHHHHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCC-------CccCcccccCCcceEEEeeeeeeecCCeEEEEEE
Confidence 334444567899999999999999999999987332111 00111111 3345555555555555553 6789
Q ss_pred EeCCCCCCChHH--------------HHHHHH--------------hccEEEEEEeC-CCCCchhHHHHHHHHHHcCCcE
Q 010392 157 IDTPGHSDFGGE--------------VERILN--------------MVEGVLLVVDS-VEGPMPQTRFVLKKALEFGHAV 207 (512)
Q Consensus 157 iDtPG~~~~~~~--------------~~~~~~--------------~~d~~llvida-~~g~~~~~~~~l~~~~~~~~p~ 207 (512)
|||||+.|+... ...++. ..+++|++|.. .+++...+.+.++.+.+ .+.+
T Consensus 87 IDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNl 165 (373)
T COG5019 87 IDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNL 165 (373)
T ss_pred eccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCe
Confidence 999999875421 112221 25779999985 46888888888877755 3788
Q ss_pred EEEEeccCCCCC
Q 010392 208 VVVVNKIDRPSA 219 (512)
Q Consensus 208 ivviNK~Dl~~~ 219 (512)
|-|+-|+|....
T Consensus 166 IPVI~KaD~lT~ 177 (373)
T COG5019 166 IPVIAKADTLTD 177 (373)
T ss_pred eeeeeccccCCH
Confidence 999999998753
No 341
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.1e-07 Score=93.12 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=92.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc---cee--eeeeccchhhhhcceeEEeee-eEEE-------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ---TVK--ERIMDSNDLERERGITILSKN-TSIT------------- 148 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~---~~~--~~~~d~~~~e~~~g~ti~~~~-~~~~------------- 148 (512)
..+-|.++|.-..||||||+.|+.......+.+ +.. ..+|.-..++.-.|.+..... ..+.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 345699999999999999999998866533222 111 234444444433444332220 0000
Q ss_pred ----ECC---eeEEEEeCCCC-----------CCChHHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHcCCcEEE
Q 010392 149 ----YND---TKINIIDTPGH-----------SDFGGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFGHAVVV 209 (512)
Q Consensus 149 ----~~~---~~i~liDtPG~-----------~~~~~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~~~p~iv 209 (512)
.++ .+++|+||||. .+|..-...+...+|.+++++|+.. .+..+..+++..++.+.-.+-|
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRV 216 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRV 216 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEE
Confidence 000 26999999996 3688888889999999999999876 6778889999999988888999
Q ss_pred EEeccCCCC
Q 010392 210 VVNKIDRPS 218 (512)
Q Consensus 210 viNK~Dl~~ 218 (512)
|+||.|..+
T Consensus 217 VLNKADqVd 225 (532)
T KOG1954|consen 217 VLNKADQVD 225 (532)
T ss_pred EeccccccC
Confidence 999999875
No 342
>PTZ00258 GTP-binding protein; Provisional
Probab=98.76 E-value=5.1e-08 Score=99.64 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=62.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--------------
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-------------- 151 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-------------- 151 (512)
+....+|+|+|.+|+|||||+|+|++........+ ++|+......+.+.+
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~p----------------ftTi~p~~g~v~~~d~r~~~l~~~~~~~~ 81 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFP----------------FCTIDPNTARVNVPDERFDWLCKHFKPKS 81 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCC----------------CCcccceEEEEecccchhhHHHHHcCCcc
Confidence 44567899999999999999999977654333222 456666666665543
Q ss_pred ---eeEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCC
Q 010392 152 ---TKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSV 186 (512)
Q Consensus 152 ---~~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~ 186 (512)
..+.++||||... ........++.+|++++|||+.
T Consensus 82 ~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 82 IVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3489999999753 2335566788899999999985
No 343
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.74 E-value=4.1e-10 Score=99.92 Aligned_cols=160 Identities=15% Similarity=0.224 Sum_probs=108.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe---eEEEEeCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT---KINIIDTPGH 162 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~---~i~liDtPG~ 162 (512)
+....++.|+|.-++|||+++.+.+...+...+..++ |..+ ....+.|++. ++.|||..|+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtI--------------gvdf--alkVl~wdd~t~vRlqLwdIagQ 85 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATI--------------GVDF--ALKVLQWDDKTIVRLQLWDIAGQ 85 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHH--------------hHHH--HHHHhccChHHHHHHHHhcchhh
Confidence 4456789999999999999999999888776665554 3333 2334456654 6789999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH-----cC--CcEEEEEeccCCCCCCchhhHhhhHHHHHH
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE-----FG--HAVVVVVNKIDRPSARPDYVINSTFELFIE 234 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~-----~~--~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~ 234 (512)
+.|..++.-+++.+.++.+|+|.+.. .++.+..|.+.+.. .+ +|+++..||+|.......+.-..+.++.++
T Consensus 86 erfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ke 165 (229)
T KOG4423|consen 86 ERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKE 165 (229)
T ss_pred hhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhc
Confidence 99999888899999999999997664 34444455444332 13 468889999998643222222223333333
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.+.. ..+.+|++.+. ++.+..+.+++.
T Consensus 166 ngf~------gwtets~Kenk----------ni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 166 NGFE------GWTETSAKENK----------NIPEAQRELVEK 192 (229)
T ss_pred cCcc------ceeeecccccc----------ChhHHHHHHHHH
Confidence 3333 26899999988 555555555443
No 344
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=5.1e-07 Score=90.14 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=85.4
Q ss_pred hhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEe
Q 010392 81 SRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIID 158 (512)
Q Consensus 81 ~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liD 158 (512)
++...+...++++++|.+|.|||||+|.|+.......... +....+......+......+.-++ .+++++|
T Consensus 13 r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~-------~~~~~~~~~t~~i~~~~~~iee~g~~l~Ltvid 85 (366)
T KOG2655|consen 13 RKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREV-------PGASERIKETVEIESTKVEIEENGVKLNLTVID 85 (366)
T ss_pred HHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCccc-------CCcccCccccceeeeeeeeecCCCeEEeeEEec
Confidence 3444566778999999999999999999988733221000 111122222344444444444444 3678999
Q ss_pred CCCCCCChH--------------HHHHHHH-------------hccEEEEEEeCC-CCCchhHHHHHHHHHHcCCcEEEE
Q 010392 159 TPGHSDFGG--------------EVERILN-------------MVEGVLLVVDSV-EGPMPQTRFVLKKALEFGHAVVVV 210 (512)
Q Consensus 159 tPG~~~~~~--------------~~~~~~~-------------~~d~~llvida~-~g~~~~~~~~l~~~~~~~~p~ivv 210 (512)
|||+.|+.. ....++. ..+++|++|... +|+.+.+.+.++.+.. .+.+|-|
T Consensus 86 tPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPV 164 (366)
T KOG2655|consen 86 TPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPV 164 (366)
T ss_pred cCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccce
Confidence 999987431 1222221 357899999854 5788888888776644 5789999
Q ss_pred EeccCCCCC
Q 010392 211 VNKIDRPSA 219 (512)
Q Consensus 211 iNK~Dl~~~ 219 (512)
+-|.|....
T Consensus 165 I~KaD~lT~ 173 (366)
T KOG2655|consen 165 IAKADTLTK 173 (366)
T ss_pred eeccccCCH
Confidence 999998753
No 345
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.73 E-value=1.2e-07 Score=86.16 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=90.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceee-eee--ccchhhhhcceeE---Eee-eeE--------------E
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE-RIM--DSNDLERERGITI---LSK-NTS--------------I 147 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~-~~~--d~~~~e~~~g~ti---~~~-~~~--------------~ 147 (512)
.+.|.+.|++|||||+|+++++......-...-+.. .+. |.....+..|.-+ .+. ..+ .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 588999999999999999999877544322222221 111 2221212112111 111 000 0
Q ss_pred EECCeeEEEEeCCCCCCChHHHHHHHHhcc-EEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC---CCchh
Q 010392 148 TYNDTKINIIDTPGHSDFGGEVERILNMVE-GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS---ARPDY 223 (512)
Q Consensus 148 ~~~~~~i~liDtPG~~~~~~~~~~~~~~~d-~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~---~~~~~ 223 (512)
.+.+..+.||...|. ..... .....| .-|+|||..+|...-.+-.-- .-..=++|+||.|+.. ++.+.
T Consensus 93 ~~~~~Dll~iEs~GN--L~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP~----i~~aDllVInK~DLa~~v~~dlev 164 (202)
T COG0378 93 DFPDLDLLFIESVGN--LVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGPG----IFKADLLVINKTDLAPYVGADLEV 164 (202)
T ss_pred cCCcCCEEEEecCcc--eeccc--CcchhhceEEEEEECCCCCCCcccCCCc----eeEeeEEEEehHHhHHHhCccHHH
Confidence 111247888999882 11000 122345 789999988875322110000 0013589999999963 33232
Q ss_pred hHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 224 VINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
..+. .+.+. .+.|++++|+++|+ |++++++++...
T Consensus 165 m~~d----a~~~n-----p~~~ii~~n~ktg~----------G~~~~~~~i~~~ 199 (202)
T COG0378 165 MARD----AKEVN-----PEAPIIFTNLKTGE----------GLDEWLRFIEPQ 199 (202)
T ss_pred HHHH----HHHhC-----CCCCEEEEeCCCCc----------CHHHHHHHHHhh
Confidence 2222 22222 24589999999999 999999988754
No 346
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.72 E-value=2.3e-08 Score=92.14 Aligned_cols=121 Identities=15% Similarity=0.234 Sum_probs=83.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-eeEEEEeCCCCCCChH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSDFGG 167 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~i~liDtPG~~~~~~ 167 (512)
.++|.++|.+|+|||++-..+..+....... .-|-||+....++.+-| .-+++||+.|++.|..
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~---------------rlg~tidveHsh~RflGnl~LnlwDcGgqe~fme 68 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTR---------------RLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFME 68 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhh---------------ccCCcceeeehhhhhhhhheeehhccCCcHHHHH
Confidence 4689999999999999887776443221111 11667777777776654 6789999999987654
Q ss_pred HHH-----HHHHhccEEEEEEeCCCCCchhHHHHHHH----HHHc--CCcEEEEEeccCCCCCCchhh
Q 010392 168 EVE-----RILNMVEGVLLVVDSVEGPMPQTRFVLKK----ALEF--GHAVVVVVNKIDRPSARPDYV 224 (512)
Q Consensus 168 ~~~-----~~~~~~d~~llvida~~g~~~~~~~~l~~----~~~~--~~p~ivviNK~Dl~~~~~~~~ 224 (512)
... ..++..+.+++|+|+.......+....+. +.+. ...+++.+.|+|+...+..+.
T Consensus 69 n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~ 136 (295)
T KOG3886|consen 69 NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAREL 136 (295)
T ss_pred HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHH
Confidence 433 35677899999999887655555444443 3333 245889999999986654433
No 347
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=2.3e-07 Score=92.41 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=58.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE------------------CC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY------------------ND 151 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~------------------~~ 151 (512)
.+++|+|-+|+|||||.|+++........++.. ||..+...+.. -.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~----------------TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~ 66 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFC----------------TIEPNVGVVYVPDCRLDELAEIVKCPPKIRP 66 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcc----------------cccCCeeEEecCchHHHHHHHhcCCCCcEEe
Confidence 579999999999999999999887554555543 23222222211 12
Q ss_pred eeEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCC
Q 010392 152 TKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSV 186 (512)
Q Consensus 152 ~~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~ 186 (512)
..+.|+|.+|... ........++.+|+++.|+|+.
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3578999999743 5566778899999999999976
No 348
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.68 E-value=5.6e-07 Score=95.79 Aligned_cols=117 Identities=19% Similarity=0.228 Sum_probs=73.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|.+|+|||||+|+|++.......... .++| ........+.+..+++|||||..+..
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~--------------~~TT-r~~ei~~~idG~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFG--------------MGTT-SVQEIEGLVQGVKIRVIDTPGLKSSA 180 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCC--------------CCce-EEEEEEEEECCceEEEEECCCCCccc
Confidence 34578999999999999999999987533221110 1222 22233345678899999999998642
Q ss_pred ------HH----HHHHHH--hccEEEEEEeCCCC-CchhHHHHHHHHHHc-C----CcEEEEEeccCCCC
Q 010392 167 ------GE----VERILN--MVEGVLLVVDSVEG-PMPQTRFVLKKALEF-G----HAVVVVVNKIDRPS 218 (512)
Q Consensus 167 ------~~----~~~~~~--~~d~~llvida~~g-~~~~~~~~l~~~~~~-~----~p~ivviNK~Dl~~ 218 (512)
.. +..++. ..|++|+|+..... ...+....++.+.+. | ..+|||++..|...
T Consensus 181 ~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 181 SDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11 122333 36888888765432 222334455555432 3 35899999999874
No 349
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=5.6e-07 Score=83.54 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=88.3
Q ss_pred HHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeE
Q 010392 77 AEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKI 154 (512)
Q Consensus 77 ~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i 154 (512)
.+.+.+.+....-+||+++|.+|.|||||+|.|........... |...+-.-..+.+......+.-++ .++
T Consensus 34 ~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~-------~~~~~p~pkT~eik~~thvieE~gVklkl 106 (336)
T KOG1547|consen 34 EQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSS-------DNSAEPIPKTTEIKSITHVIEEKGVKLKL 106 (336)
T ss_pred HHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCC-------CcccCcccceEEEEeeeeeeeecceEEEE
Confidence 44455566677889999999999999999999976432211110 111111111223334444444444 368
Q ss_pred EEEeCCCCCCCh--------------HHHHHHHH--------------hccEEEEEEeCC-CCCchhHHHHHHHHHHcCC
Q 010392 155 NIIDTPGHSDFG--------------GEVERILN--------------MVEGVLLVVDSV-EGPMPQTRFVLKKALEFGH 205 (512)
Q Consensus 155 ~liDtPG~~~~~--------------~~~~~~~~--------------~~d~~llvida~-~g~~~~~~~~l~~~~~~~~ 205 (512)
++|||||+.|+. .....+++ ..+++++.|..+ +.+..-+.++++.+.+. +
T Consensus 107 tviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-v 185 (336)
T KOG1547|consen 107 TVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-V 185 (336)
T ss_pred EEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-h
Confidence 899999998743 11222322 146788888865 35666677777766543 5
Q ss_pred cEEEEEeccCCCCCC-chhhHhhhHHHHH
Q 010392 206 AVVVVVNKIDRPSAR-PDYVINSTFELFI 233 (512)
Q Consensus 206 p~ivviNK~Dl~~~~-~~~~~~~~~~~~~ 233 (512)
.++-|+-|.|...-+ .....+.+++.|.
T Consensus 186 NvvPVIakaDtlTleEr~~FkqrI~~el~ 214 (336)
T KOG1547|consen 186 NVVPVIAKADTLTLEERSAFKQRIRKELE 214 (336)
T ss_pred eeeeeEeecccccHHHHHHHHHHHHHHHH
Confidence 788899999976422 1223334444443
No 350
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.66 E-value=7.1e-08 Score=94.37 Aligned_cols=80 Identities=24% Similarity=0.300 Sum_probs=57.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe-----------------eE
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-----------------KI 154 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~-----------------~i 154 (512)
|+++|.+|+|||||+|+|++........+ ++|+......+.+.+. .+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~p----------------ftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYP----------------FCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcccccc----------------ccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 58999999999999999998755332222 4455555555555442 48
Q ss_pred EEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCCC
Q 010392 155 NIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 155 ~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~~ 187 (512)
.++|+||..+ ........++.+|++++|||+..
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 9999999753 22345566788999999999763
No 351
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.65 E-value=2.8e-07 Score=73.74 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=65.5
Q ss_pred eeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCCcccc
Q 010392 291 MLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGIDDIQI 368 (512)
Q Consensus 291 ~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~~~~~ 368 (512)
+.|.++|.....|.++.+||.+|.|++|+.+.+.|.++.....+|.+|. .+..++++|.+|+-|+| .++++++.
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~----~~~~~v~~a~~G~ecgi~l~~~~d~~~ 78 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLK----RFKDDVKEVKKGYECGITLENFNDIKV 78 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEE----EcCcccCEECCCCEEEEEEeCcccCCC
Confidence 4566677666778999999999999999999999998655456888885 44678999999999998 56779999
Q ss_pred CCeE
Q 010392 369 GETI 372 (512)
Q Consensus 369 Gdtl 372 (512)
||+|
T Consensus 79 Gdvi 82 (84)
T cd03692 79 GDII 82 (84)
T ss_pred CCEE
Confidence 9987
No 352
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.63 E-value=2.3e-07 Score=76.36 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=66.4
Q ss_pred ccccceeeeEEEeeeC--------CCcEEEEEEEeecccCCCCEEEEccC-------CCce--eeeeeeeeEeeecCcee
Q 010392 285 KDGALQMLATNLEYDE--------HKGRIAIGRLHAGVLRKGMEVRVCTS-------EDSC--RYARISELFVYEKFSRV 347 (512)
Q Consensus 285 ~~~p~~~~V~~~~~~~--------~~G~v~~grV~sG~l~~g~~v~~~~~-------~~~~--~~~kV~~i~~~~g~~~~ 347 (512)
.+.|+.|+|.++|... ..|.|+.|+|.+|.|+.||+|.+.|. +... ..++|.+|+ ..+.
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~----~~~~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLK----AENN 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEE----ecCc
Confidence 4678999999998876 88999999999999999999999855 1111 245777774 5567
Q ss_pred ecceecCCCEEEE-ccCC------ccccCCeEec
Q 010392 348 SAEIVAAGDICAV-CGID------DIQIGETIAD 374 (512)
Q Consensus 348 ~v~~a~aGdiv~i-~~l~------~~~~Gdtl~~ 374 (512)
.+++|.||+.++| ++|+ |..+|.+++.
T Consensus 78 ~l~~a~pGgliGvgT~Ldpsltk~D~l~GqV~g~ 111 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLDPTLTKADRLVGQVVGE 111 (113)
T ss_pred cccEEeCCCeEEEccccCccccccceeeEEEeec
Confidence 8999999999999 5654 4445655554
No 353
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.60 E-value=1.3e-07 Score=85.07 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=68.7
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (512)
...+.+.+..+|++++|+|+.++...+...+...+...++|+++|+||+|+.... ........... ...+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~-------~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKE---VLEKWKSIKES-------EGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH---HHHHHHHHHHh-------CCCc
Confidence 4556667778999999999988666666666666666789999999999985321 11121111111 1346
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
++++||++|. |+++|++.+.+.+|.
T Consensus 73 ~~~iSa~~~~----------gi~~L~~~l~~~~~~ 97 (156)
T cd01859 73 VVYVSAKERL----------GTKILRRTIKELAKI 97 (156)
T ss_pred EEEEEccccc----------cHHHHHHHHHHHHhh
Confidence 8999999999 999999999998874
No 354
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=9.1e-07 Score=93.39 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=104.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchh-------------hhhcceeE--------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL-------------ERERGITI-------------- 140 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~-------------e~~~g~ti-------------- 140 (512)
...+|+|.|..++||||++|+++.....+...+...+.+.+-... |...-.|+
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 467899999999999999999999877766555444322221111 00000011
Q ss_pred EeeeeEEEECCe-------eEEEEeCCCCC---CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEE
Q 010392 141 LSKNTSITYNDT-------KINIIDTPGHS---DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVV 210 (512)
Q Consensus 141 ~~~~~~~~~~~~-------~i~liDtPG~~---~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivv 210 (512)
......+.|++. .+.++|.||.. .+...+......+|.+|||+++..-.....+.++..+.+.+..++|+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIl 267 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFIL 267 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEE
Confidence 112334445432 68999999975 45566667788899999999998877777777777776664457778
Q ss_pred EeccCCCCCCchhhHhhhHHHHHHhcCCcc-ccccceeeeccc
Q 010392 211 VNKIDRPSARPDYVINSTFELFIELNATDE-QCDFQAIYASGI 252 (512)
Q Consensus 211 iNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pvi~~Sa~ 252 (512)
.||.|..... .+..+.+.....++..... ...--|+++||+
T Consensus 268 nnkwDasase-~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 268 NNKWDASASE-PECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred echhhhhccc-HHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 8899986443 4555666555444432111 011137899965
No 355
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.53 E-value=4.8e-07 Score=84.51 Aligned_cols=85 Identities=22% Similarity=0.339 Sum_probs=63.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC--
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF-- 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~-- 165 (512)
.--+|+++|.+.+|||||+..+...........+ +|...-...+.+++..|+++|.||..+-
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF----------------TTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEF----------------TTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceee----------------eEEEeecceEEecCceEEEecCcccccccc
Confidence 3457999999999999999999765433332222 3666677788999999999999997642
Q ss_pred -----hHHHHHHHHhccEEEEEEeCCCC
Q 010392 166 -----GGEVERILNMVEGVLLVVDSVEG 188 (512)
Q Consensus 166 -----~~~~~~~~~~~d~~llvida~~g 188 (512)
...+....+.+|.+++|+|+...
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcc
Confidence 23344556779999999999874
No 356
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.27 E-value=3.3e-06 Score=76.10 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=62.1
Q ss_pred HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
+..++..+|.+++|+|+..........+.+.+... ++|+++|+||+|+... ++ .......+.+. ..+-+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~-~~~~~~~~~~~------~~~~~ 72 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WV-TARWVKILSKE------YPTIA 72 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HH-HHHHHHHHhcC------CcEEE
Confidence 45678899999999999887655555666665543 4899999999999642 11 22222222211 11225
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+++||+++. |+..|++.+.+++
T Consensus 73 ~~iSa~~~~----------~~~~L~~~l~~~~ 94 (157)
T cd01858 73 FHASINNPF----------GKGSLIQLLRQFS 94 (157)
T ss_pred EEeeccccc----------cHHHHHHHHHHHH
Confidence 889999998 8899998887653
No 357
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.25 E-value=2e-06 Score=77.44 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=38.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
...+|+++|.+|+|||||+|+|++........ ..|.|....... . +..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~---------------~~g~T~~~~~~~--~-~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP---------------IPGETKVWQYIT--L-MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC---------------CCCeeEeEEEEE--c-CCCEEEEECcCC
Confidence 34679999999999999999998764432221 125555433222 2 345899999994
No 358
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.24 E-value=1.2e-05 Score=77.86 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=48.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
.-.+|.++|..++|||||+..|-+... .......+..|++-+.+.+.. -.++++|-.-|..-...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~-~KkgsgLeY~yl~V~de~RDd--------------~tr~~VWiLDGd~~h~~ 115 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSET-VKKGSGLEYLYLHVHDEDRDD--------------LTRCNVWILDGDLYHKG 115 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccc-cCCCCCcceEEEecccccchh--------------hhhcceEEecCchhhhh
Confidence 456899999999999999999976542 222233334454444433332 12455555555432233
Q ss_pred HHHHHHHhc---c-EEEEEEeCCC
Q 010392 168 EVERILNMV---E-GVLLVVDSVE 187 (512)
Q Consensus 168 ~~~~~~~~~---d-~~llvida~~ 187 (512)
....++... + .+||++|.+.
T Consensus 116 LLk~al~ats~aetlviltasms~ 139 (473)
T KOG3905|consen 116 LLKFALPATSLAETLVILTASMSN 139 (473)
T ss_pred HHhhcccccCccceEEEEEEecCC
Confidence 333344332 2 3677777665
No 359
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.24 E-value=1.4e-05 Score=79.92 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=63.6
Q ss_pred cceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCC-----------chhHHHHHHHHHHc-
Q 010392 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-----------MPQTRFVLKKALEF- 203 (512)
Q Consensus 136 ~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~-----------~~~~~~~l~~~~~~- 203 (512)
|-.|.......+.+++..+.++|.+||..-+..|...+..++++|+|++.++-. ..+...+++.+...
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 445667778889999999999999999998999999999999999999966421 12233344444433
Q ss_pred ---CCcEEEEEeccCCC
Q 010392 204 ---GHAVVVVVNKIDRP 217 (512)
Q Consensus 204 ---~~p~ivviNK~Dl~ 217 (512)
+.++|+++||.|+.
T Consensus 259 ~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLF 275 (354)
T ss_pred ccccCcEEEEeecHHHH
Confidence 57899999999985
No 360
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.24 E-value=2.7e-06 Score=79.17 Aligned_cols=102 Identities=18% Similarity=0.034 Sum_probs=65.5
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC-cccc
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-DEQC 242 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~ 242 (512)
.|...+..++..+|++++|+|+.+........++ ....++|+++|+||+|+..... ....+.......... ....
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPKDK--NLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCCCCC--CHHHHHHHHHHHHHhhcCCC
Confidence 3677888889999999999998875433333331 2234689999999999964321 111111111000000 0000
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
..+++++||++|+ |+++|++.|.+.+|
T Consensus 99 ~~~i~~vSA~~~~----------gi~eL~~~l~~~l~ 125 (190)
T cd01855 99 PKDVILISAKKGW----------GVEELINAIKKLAK 125 (190)
T ss_pred cccEEEEECCCCC----------CHHHHHHHHHHHhh
Confidence 1258999999999 99999999998876
No 361
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.22 E-value=2.4e-06 Score=78.12 Aligned_cols=57 Identities=18% Similarity=0.420 Sum_probs=40.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
...+|+++|.+|+|||||+|+|++........ ..|+|.......+ +..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~---------------~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGA---------------TPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecC---------------CCCeEcceEEEEe---CCCEEEEECcCC
Confidence 34689999999999999999999765432221 1266665443332 246899999994
No 362
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.19 E-value=7.4e-06 Score=72.39 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=57.9
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
.....++..+|.+++|+|+.++...+...+.+.+... ++|+++|+||+|+... +...+..+.+...+ .
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~---~~~~~~~~~~~~~~-------~ 72 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE---EQRKAWAEYFKKEG-------I 72 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH---HHHHHHHHHHHhcC-------C
Confidence 4567789999999999999887776666777777666 8999999999998632 22333334443322 3
Q ss_pred ceeeeccccCc
Q 010392 245 QAIYASGIQGK 255 (512)
Q Consensus 245 pvi~~Sa~~g~ 255 (512)
+++++||+++.
T Consensus 73 ~ii~iSa~~~~ 83 (141)
T cd01857 73 VVVFFSALKEN 83 (141)
T ss_pred eEEEEEecCCC
Confidence 58999999886
No 363
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.18 E-value=4.6e-06 Score=76.32 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=67.5
Q ss_pred CCCC-CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 160 PGHS-DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 160 PG~~-~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
|||- ....++...+..+|.+++|+|+.++.......++..+ .++|+++|+||+|+... . ...+..+.+...
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~--~-~~~~~~~~~~~~--- 74 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP--K-KTKKWLKYFESK--- 74 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh--H-HHHHHHHHHHhc---
Confidence 5653 3456677788999999999999876554444444433 36799999999998632 1 122222222221
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
..+++++||+++. |+++|++.+...+|.
T Consensus 75 ----~~~vi~iSa~~~~----------gi~~L~~~l~~~l~~ 102 (171)
T cd01856 75 ----GEKVLFVNAKSGK----------GVKKLLKAAKKLLKD 102 (171)
T ss_pred ----CCeEEEEECCCcc----------cHHHHHHHHHHHHHH
Confidence 1247899999998 999999999887753
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.18 E-value=2.9e-06 Score=75.02 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=37.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
+++++|.+|+|||||+|+|++........ ..|.|..... +..++ .+.||||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~---------------~~~~~~~~~~--~~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA---------------TPGKTKHFQT--IFLTP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC---------------CCCcccceEE--EEeCC-CEEEEECCCcC
Confidence 79999999999999999998764431111 1133443332 33333 68999999973
No 365
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.16 E-value=1.1e-06 Score=78.55 Aligned_cols=66 Identities=26% Similarity=0.404 Sum_probs=35.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
+.++++|++|+|||||+|+|+........ .+ . ....+.+.+|.... .+.+. ....||||||..+|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~--~i----s--~~~~rGkHTTt~~~--l~~l~-~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTG--EI----S--EKTGRGKHTTTHRE--LFPLP-DGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S----------------------SEE--EEEET-TSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhh--hh----h--cccCCCcccCCCee--EEecC-CCcEEEECCCCCccc
Confidence 67899999999999999999986432111 11 0 01112223333333 33332 246899999987763
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.15 E-value=5.7e-05 Score=75.90 Aligned_cols=151 Identities=21% Similarity=0.219 Sum_probs=79.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccc---------hhhhhcceeEEeeee-------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---------DLERERGITILSKNT------------- 145 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~---------~~e~~~g~ti~~~~~------------- 145 (512)
....|+++|++|+||||++..|........ ..+.-.-.|.. .....+++.+.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g--~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQG--KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 356789999999999999999986543211 11110011211 011223333322100
Q ss_pred EEEECCeeEEEEeCCCCCCCh----HHHHHHHH--------hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEec
Q 010392 146 SITYNDTKINIIDTPGHSDFG----GEVERILN--------MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNK 213 (512)
Q Consensus 146 ~~~~~~~~i~liDtPG~~~~~----~~~~~~~~--------~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK 213 (512)
.....++.+.||||||..... .++....+ ..+..++|+|+..+-... ... ....+.--+.-+|+||
T Consensus 191 ~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~-~~a-~~f~~~~~~~giIlTK 268 (318)
T PRK10416 191 AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNAL-SQA-KAFHEAVGLTGIILTK 268 (318)
T ss_pred HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHH-HHH-HHHHhhCCCCEEEEEC
Confidence 001245689999999975432 23333333 246789999999653221 121 1111111345788999
Q ss_pred cCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCcc
Q 010392 214 IDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKA 256 (512)
Q Consensus 214 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~ 256 (512)
+|.. ...-.+++.. ... ..|+.+++ +|++
T Consensus 269 lD~t-~~~G~~l~~~----~~~-------~~Pi~~v~--~Gq~ 297 (318)
T PRK10416 269 LDGT-AKGGVVFAIA----DEL-------GIPIKFIG--VGEG 297 (318)
T ss_pred CCCC-CCccHHHHHH----HHH-------CCCEEEEe--CCCC
Confidence 9953 2222333222 121 45888888 5663
No 367
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=8.1e-06 Score=83.16 Aligned_cols=129 Identities=17% Similarity=0.151 Sum_probs=69.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccc---hhhh------hcceeEEeeeeE-------EEECCe
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---DLER------ERGITILSKNTS-------ITYNDT 152 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~---~~e~------~~g~ti~~~~~~-------~~~~~~ 152 (512)
...++++|++|+||||++..|............+.-.-.|.. ..|+ ..|+.+...... ..+.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 457999999999999999999865321100001110011111 0111 113322211110 123567
Q ss_pred eEEEEeCCCCCCChHH---HHHHHHhc---cEEEEEEeCCCCCchhHHHHHHHHHHcCCc-------EEEEEeccCCC
Q 010392 153 KINIIDTPGHSDFGGE---VERILNMV---EGVLLVVDSVEGPMPQTRFVLKKALEFGHA-------VVVVVNKIDRP 217 (512)
Q Consensus 153 ~i~liDtPG~~~~~~~---~~~~~~~~---d~~llvida~~g~~~~~~~~l~~~~~~~~p-------~ivviNK~Dl~ 217 (512)
.+.||||+|...+... ....+..+ +-.+||+++..+........+.+....++| -=++++|+|-.
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 8999999998744332 33333333 346999999887655444444443333322 35678999954
No 368
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.15 E-value=5.4e-06 Score=80.38 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=65.1
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCC--CchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEG--PMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g--~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
+|......++..+|.+++|+|+.+. .......|+..+...++|+++|+||+||...+ ....+..+.+..
T Consensus 25 R~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~--~~~~~~~~~~~~------- 95 (245)
T TIGR00157 25 RKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE--DMEKEQLDIYRN------- 95 (245)
T ss_pred ccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH--HHHHHHHHHHHH-------
Confidence 3444444578899999999998853 34556677777777889999999999996432 222222333322
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHH
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
..++++++||++|. |+++|++.+.
T Consensus 96 ~g~~v~~~SAktg~----------gi~eLf~~l~ 119 (245)
T TIGR00157 96 IGYQVLMTSSKNQD----------GLKELIEALQ 119 (245)
T ss_pred CCCeEEEEecCCch----------hHHHHHhhhc
Confidence 23579999999999 8888887664
No 369
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.10 E-value=1.8e-05 Score=80.39 Aligned_cols=132 Identities=13% Similarity=0.168 Sum_probs=87.2
Q ss_pred cceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-----------CchhHHHHHHHHHHc-
Q 010392 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-----------PMPQTRFVLKKALEF- 203 (512)
Q Consensus 136 ~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-----------~~~~~~~~l~~~~~~- 203 (512)
+..|.......+.+++..+.+||.+|+..++..|..++..++++++|+|.++- ........++.+...
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 44566667777888999999999999999999999999999999999998752 223344444444432
Q ss_pred ---CCcEEEEEeccCCCCC------------------CchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCC
Q 010392 204 ---GHAVVVVVNKIDRPSA------------------RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN 262 (512)
Q Consensus 204 ---~~p~ivviNK~Dl~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~ 262 (512)
++|+++++||.|+... +.+...+-+...|..+........+-+.+++|..-.
T Consensus 248 ~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~------- 320 (342)
T smart00275 248 WFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTR------- 320 (342)
T ss_pred cccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccH-------
Confidence 5799999999997531 112333344555554433201123334566666555
Q ss_pred cCCCchhhHHHHHHh
Q 010392 263 LADDLGPLFESIMRC 277 (512)
Q Consensus 263 ~~~gi~~Ll~~i~~~ 277 (512)
.+..+++.+.+.
T Consensus 321 ---~~~~v~~~v~~~ 332 (342)
T smart00275 321 ---NIRVVFDAVKDI 332 (342)
T ss_pred ---HHHHHHHHHHHH
Confidence 556666655543
No 370
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.10 E-value=1.2e-05 Score=81.45 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=59.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC-CCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-----------------
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK-VFRDNQTVKERIMDSNDLERERGITILSKNTSITYND----------------- 151 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~-~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~----------------- 151 (512)
.+++|+|.+++|||||.++|+.... ....++.. |+......+...+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypft----------------Ti~p~~g~v~v~d~r~d~L~~~~~~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFT----------------TIEPNAGVVNPSDPRLDLLAIYIKPEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCC----------------CCCCceeEEEechhHHHHHHHHhCCcCcCC
Confidence 5799999999999999999998765 44333321 2333333333322
Q ss_pred eeEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCCC
Q 010392 152 TKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 152 ~~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~~ 187 (512)
..+.++|.||... ........++.+|++++|+|+.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 3689999999754 44577888999999999999864
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.09 E-value=5.3e-05 Score=74.50 Aligned_cols=127 Identities=19% Similarity=0.229 Sum_probs=67.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccc---hh------hhhcceeEEeeee-----E------
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---DL------ERERGITILSKNT-----S------ 146 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~---~~------e~~~g~ti~~~~~-----~------ 146 (512)
...+.|+++|++|+||||++..|........ ..+----.|.. .. ....++.+..... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g--~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQG--KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 3457789999999999999999875432111 11100011210 00 1222332211000 0
Q ss_pred --EEECCeeEEEEeCCCCCCChHHH----HHHH---H-----hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEe
Q 010392 147 --ITYNDTKINIIDTPGHSDFGGEV----ERIL---N-----MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVN 212 (512)
Q Consensus 147 --~~~~~~~i~liDtPG~~~~~~~~----~~~~---~-----~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviN 212 (512)
....++.+.||||||........ .... . ..|..++|+|+..+- ..........+.--..-+++|
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCCCCEEEEE
Confidence 01245789999999986543222 2222 1 278899999997542 222222222221124678899
Q ss_pred ccCCC
Q 010392 213 KIDRP 217 (512)
Q Consensus 213 K~Dl~ 217 (512)
|+|..
T Consensus 226 KlDe~ 230 (272)
T TIGR00064 226 KLDGT 230 (272)
T ss_pred ccCCC
Confidence 99964
No 372
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.08 E-value=5.3e-06 Score=78.05 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=60.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC---
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF--- 165 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~--- 165 (512)
.-+|.++|-+.+|||||+..|.+.......+. +.|...-.....+++-++++.|.||..+-
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasye----------------fttl~~vpG~~~y~gaKiqlldlpgiiegakd 122 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYE----------------FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKD 122 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCcccccc----------------ceeEEEecceEeccccceeeecCcchhccccc
Confidence 34799999999999999999976533222111 44555556667788999999999998642
Q ss_pred ----hHHHHHHHHhccEEEEEEeCCCC
Q 010392 166 ----GGEVERILNMVEGVLLVVDSVEG 188 (512)
Q Consensus 166 ----~~~~~~~~~~~d~~llvida~~g 188 (512)
...+....+.|..+++|+|+...
T Consensus 123 gkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 123 GKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred CCCCccEEEEEeecccEEEEEeeccCc
Confidence 23344556778999999997653
No 373
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.08 E-value=9.8e-06 Score=80.11 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=68.8
Q ss_pred CCCC-CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 160 PGHS-DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 160 PG~~-~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
|||. ....++...+..+|.+|+|+|+..+.......+.+.+ .++|+++|+||+|+... .......+.+...
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~---~~~~~~~~~~~~~--- 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP---AVTKQWLKYFEEK--- 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH---HHHHHHHHHHHHc---
Confidence 7774 3456677889999999999999876554444444444 36899999999998532 1122222222221
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
..+++++||+++. |+..|++.+.+.++.
T Consensus 77 ----~~~vi~iSa~~~~----------gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 77 ----GIKALAINAKKGK----------GVKKIIKAAKKLLKE 104 (276)
T ss_pred ----CCeEEEEECCCcc----------cHHHHHHHHHHHHHH
Confidence 2368999999998 899999999887754
No 374
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.08 E-value=1.8e-05 Score=79.83 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=85.7
Q ss_pred cceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-----------CchhHHHHHHHHHH--
Q 010392 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-----------PMPQTRFVLKKALE-- 202 (512)
Q Consensus 136 ~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-----------~~~~~~~~l~~~~~-- 202 (512)
+..|.......+.+++..+.+||++|+...+..|..++..++++++|+|.++- ........++.+..
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 34455666677888899999999999999999999999999999999997752 12233344444433
Q ss_pred --cCCcEEEEEeccCCCCC-------------------CchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCC
Q 010392 203 --FGHAVVVVVNKIDRPSA-------------------RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD 261 (512)
Q Consensus 203 --~~~p~ivviNK~Dl~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~ 261 (512)
.++|+++++||.|+... +.+...+-+...|.++... ....+-+.+++|..-.
T Consensus 225 ~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~-~~~~~~~~~t~a~Dt~------ 297 (317)
T cd00066 225 WFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRN-PNKEIYPHFTCATDTE------ 297 (317)
T ss_pred cccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcC-CCCeEEEEeccccchH------
Confidence 26899999999996421 1223334444555554332 1123334556666554
Q ss_pred CcCCCchhhHHHHHHh
Q 010392 262 NLADDLGPLFESIMRC 277 (512)
Q Consensus 262 ~~~~gi~~Ll~~i~~~ 277 (512)
.+..+++.+.+.
T Consensus 298 ----~i~~vf~~v~~~ 309 (317)
T cd00066 298 ----NIRFVFDAVKDI 309 (317)
T ss_pred ----HHHHHHHHHHHH
Confidence 566666665543
No 375
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.07 E-value=7.5e-06 Score=73.61 Aligned_cols=57 Identities=28% Similarity=0.495 Sum_probs=39.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
...+++++|.+|+|||||+|+|++........ ..++|.......+ +..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~---------------~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN---------------VPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccC---------------CCCcccceEEEEe---cCCEEEEECCCC
Confidence 46789999999999999999999865432111 1245555443332 246999999994
No 376
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.07 E-value=1.6e-05 Score=71.45 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=56.0
Q ss_pred cEEEEEEeCCCCCchhHHHHH-HHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCc
Q 010392 177 EGVLLVVDSVEGPMPQTRFVL-KKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGK 255 (512)
Q Consensus 177 d~~llvida~~g~~~~~~~~l-~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~ 255 (512)
|.+|+|+|+.++.......+. ..+...++|+++|+||+|+... +. ..+....+.... ..+++++||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~-~~~~~~~~~~~~------~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EV-LRKWLAYLRHSY------PTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HH-HHHHHHHHHhhC------CceEEEEeccCCc
Confidence 789999999876555444443 3556678999999999998542 11 112111222111 2358999999999
Q ss_pred cCCCCCCcCCCchhhHHHHHHhC
Q 010392 256 AGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 256 ~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
|+..|++.+.+.+
T Consensus 72 ----------gi~~L~~~i~~~~ 84 (155)
T cd01849 72 ----------GIEKKESAFTKQT 84 (155)
T ss_pred ----------ChhhHHHHHHHHh
Confidence 8999999887654
No 377
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.04 E-value=6.6e-06 Score=76.59 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=40.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcC-ccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRD-NQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~-~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
..+++++|.+|+|||||+|+|+........ ... .......|+|.......+. ..+.||||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~--------~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDL--------LTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccc--------cccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 357999999999999999999986432110 000 0011123677766554442 25899999995
No 378
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.03 E-value=1.1e-05 Score=73.84 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=39.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
...+++++|.+|+|||||+|+|+.......... .++|.......+. ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~---------------~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNK---------------PGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCC---------------CCEEeeeEEEEec---CCEEEEECCCC
Confidence 446899999999999999999997654321111 1455554443332 56899999996
No 379
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.03 E-value=2.4e-05 Score=80.97 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=66.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch---------hhhhcceeEEeeeeE-------------
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKNTS------------- 146 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~ti~~~~~~------------- 146 (512)
...|+++|..|+||||++..|......... .+.---.|... .....++.+......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~--kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGF--KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 567899999999999999999743211110 00000011100 111122322211100
Q ss_pred EEECCeeEEEEeCCCCCCChHH----HHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 147 ITYNDTKINIIDTPGHSDFGGE----VERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 147 ~~~~~~~i~liDtPG~~~~~~~----~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
..-.++.+.||||||....... +..... ..|-++||+|+..|-.. ....+...+.--+.-+++||+|..
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 0012578999999997644332 333222 24679999998876322 222233333223567889999964
No 380
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.02 E-value=3.5e-05 Score=73.72 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=54.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh--cCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ--AKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~--~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
.+..-|+|+|+.++|||||+|.|++. .+...... ....+|+-+....... ..+..+.++||||..+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~-----------~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~ 72 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS-----------QQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDG 72 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC-----------CCCccceEEEeccccC-CCcceEEEEecCCcCc
Confidence 35677999999999999999999987 33222110 1112233322211111 2457899999999865
Q ss_pred Ch------HHHHHHHHh--ccEEEEEEeCCC
Q 010392 165 FG------GEVERILNM--VEGVLLVVDSVE 187 (512)
Q Consensus 165 ~~------~~~~~~~~~--~d~~llvida~~ 187 (512)
.. .....++.. +|.+|+.++...
T Consensus 73 ~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 73 RERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 32 223344444 888888887653
No 381
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.01 E-value=5.7e-05 Score=79.41 Aligned_cols=85 Identities=16% Similarity=0.283 Sum_probs=46.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
..++|.|+|..++|||||+.+|.+... .......++.|.|-....++ .-.++++|-..|-..+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~-~~~~~aLeYty~~v~d~~~d--------------d~~rl~vw~L~g~~~~~~ 88 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIED-PKKGLALEYTYLDVKDEDRD--------------DLARLNVWELDGDPSHSD 88 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCC-CCCCcccceEEEeeccCcCC--------------cCceeeEEEcCCCcchHh
Confidence 457899999999999999999865432 11122233444443322211 112456666655444444
Q ss_pred HHHHHHHhc----cEEEEEEeCCC
Q 010392 168 EVERILNMV----EGVLLVVDSVE 187 (512)
Q Consensus 168 ~~~~~~~~~----d~~llvida~~ 187 (512)
.+.-.+... -.+|+|+|-+.
T Consensus 89 LLk~~lt~~~l~~t~vvIvlDlS~ 112 (472)
T PF05783_consen 89 LLKFALTPENLPNTLVVIVLDLSK 112 (472)
T ss_pred HhcccCCcccccceEEEEEecCCC
Confidence 433333321 23677778554
No 382
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.00 E-value=6.2e-06 Score=84.59 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=65.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
++++++|.+|+|||||+|+|+..........++ ....|+|...... .. +..+.++||||..... .+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~----------s~~pgtT~~~~~~--~~-~~~~~l~DtPG~~~~~-~~ 220 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITT----------SPFPGTTLDLIEI--PL-DDGHSLYDTPGIINSH-QM 220 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeee----------cCCCCeEeeEEEE--Ee-CCCCEEEECCCCCChh-Hh
Confidence 689999999999999999999864321111111 1123667655433 33 2346899999986532 12
Q ss_pred HHHH-----------HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC
Q 010392 170 ERIL-----------NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (512)
Q Consensus 170 ~~~~-----------~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~ 218 (512)
...+ .......+.+|....+.......+..+...+..+.++++|.+...
T Consensus 221 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 221 AHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred hhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence 2221 123456777776553332222222223333456777777777653
No 383
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.99 E-value=0.00012 Score=67.43 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=54.4
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
..+.+.|+|||+... ......+..+|.+++++.............++.+++.+.|+.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 567899999997643 355667889999999999887666677888888888899999999999964
No 384
>PRK12288 GTPase RsgA; Reviewed
Probab=97.99 E-value=8.5e-06 Score=82.79 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=40.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.++++|.+|+|||||+|+|+.........- .....+.+.+|.......+..+ ..|+||||...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~i--------s~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDV--------SDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccc--------cCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 379999999999999999997643321110 0111233345555554444322 3599999998763
No 385
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.96 E-value=2.8e-05 Score=76.23 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=63.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--------------
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-------------- 151 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-------------- 151 (512)
..+..+++|+|.+++|||||.|+|+.........+. .||+.+...+...+
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF----------------~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~ 80 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPF----------------CTIDPNEARVEVPDSRFDLLCPIYGPKS 80 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCc----------------ceeccccceeecCchHHHHHHHhcCCcc
Confidence 445678999999999999999999987555444443 25555544443322
Q ss_pred ---eeEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCCC
Q 010392 152 ---TKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 152 ---~~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~~ 187 (512)
..+++.|++|... ........++.+|+++.|+++..
T Consensus 81 ~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 81 KVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2589999999743 44566778999999999999765
No 386
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.95 E-value=9.3e-05 Score=67.71 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=40.5
Q ss_pred CeeEEEEeCCCCCCChHH----HHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC
Q 010392 151 DTKINIIDTPGHSDFGGE----VERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~----~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~ 218 (512)
+..+.|+||||...+... +..... ..|.+++|+|+..+. .............+ ..-+|+||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~-~~~~~~~~~~~~~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ-DAVNQAKAFNEALG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh-HHHHHHHHHHhhCC-CCEEEEECCcCCC
Confidence 557899999998643322 222222 378999999986432 22233333333445 3567789999754
No 387
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.95 E-value=1.7e-05 Score=78.47 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=39.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
...+++++|.+|+|||||+|+|++........ ..|+|..... +... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~---------------~~g~T~~~~~--~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN---------------RPGVTKGQQW--IKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC---------------CCCeecceEE--EEeC-CCEEEEECCCc
Confidence 45789999999999999999998754332211 1255555443 3332 36899999998
No 388
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.95 E-value=8.7e-06 Score=79.56 Aligned_cols=66 Identities=27% Similarity=0.394 Sum_probs=42.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
+..+++|++|+|||||+|+|......... .+ +....+.+.+|.......+..++ .|+||||+..|.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~--eI------S~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTG--EI------SEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhh--hh------cccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 35789999999999999999864322111 11 11223444566666655554333 799999998763
No 389
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.94 E-value=1.7e-05 Score=78.90 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=68.6
Q ss_pred CCCCC-ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 160 PGHSD-FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 160 PG~~~-~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
|||.. -..++...+..+|.+|+|+|+..........+...+. ++|+++|+||+|+.+. ...+...+.+.+.
T Consensus 8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~---~~~~~~~~~~~~~--- 79 (287)
T PRK09563 8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP---EVTKKWIEYFEEQ--- 79 (287)
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH---HHHHHHHHHHHHc---
Confidence 77743 3456777889999999999998766555444444332 7899999999998532 1122233333221
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
..+++++||.++. |+..|++.+...++.
T Consensus 80 ----~~~vi~vSa~~~~----------gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 80 ----GIKALAINAKKGQ----------GVKKILKAAKKLLKE 107 (287)
T ss_pred ----CCeEEEEECCCcc----------cHHHHHHHHHHHHHH
Confidence 2358999999998 899999988877654
No 390
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.94 E-value=2.1e-05 Score=78.16 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=41.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
...+++++|.+|+|||||+|+|++......... .|+|..... +.. +..+.+|||||...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~---------------~g~T~~~~~--~~~-~~~~~l~DtPGi~~ 178 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNR---------------PGVTKAQQW--IKL-GKGLELLDTPGILW 178 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCC---------------CCeEEEEEE--EEe-CCcEEEEECCCcCC
Confidence 456899999999999999999997654322211 166665543 333 34689999999853
No 391
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.94 E-value=8.1e-05 Score=67.12 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=37.4
Q ss_pred CeeEEEEeCCCCCCChHHHHH--------HHHhccEEEEEEeCCCCCch--hHHHHHHHHHHcCCcEEEEEeccCC
Q 010392 151 DTKINIIDTPGHSDFGGEVER--------ILNMVEGVLLVVDSVEGPMP--QTRFVLKKALEFGHAVVVVVNKIDR 216 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~--------~~~~~d~~llvida~~g~~~--~~~~~l~~~~~~~~p~ivviNK~Dl 216 (512)
...+.++||||..+-...... ..-..|.+++++|+...... ....+..++. -.-++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---~ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA---FADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH---HCCEEEEecccC
Confidence 346789999998764333322 22346889999998653221 1111222222 234779999996
No 392
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.92 E-value=5e-05 Score=67.65 Aligned_cols=58 Identities=28% Similarity=0.267 Sum_probs=38.4
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccC
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKID 215 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~D 215 (512)
+..+.||||+|... .....+..+|.+++|.....+.. ..+....-+..--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~----y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDD----IQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhH----HHHhhhhHhhhcCEEEEeCCC
Confidence 56899999999653 23458889999999987662211 112222223345689999998
No 393
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.89 E-value=4.3e-05 Score=77.32 Aligned_cols=176 Identities=19% Similarity=0.264 Sum_probs=95.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc-ceeeeeeccchhhhhcceeEEeeee--------EEEEC---CeeE
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ-TVKERIMDSNDLERERGITILSKNT--------SITYN---DTKI 154 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~-~~~~~~~d~~~~e~~~g~ti~~~~~--------~~~~~---~~~i 154 (512)
..-.=|+|+|++-+|||||+.++......+.-.. ..+.+..|..|+.-. |-||....- .+... ..++
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~a-GktImTTEPKFiP~eAv~I~l~~~~~~kV 93 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGA-GKTIMTTEPKFIPNEAVEITLDDGIKVKV 93 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCC-CCceeccCCcccCCcceEEEecCCceEEE
Confidence 3445699999999999999999987654432111 111333444443322 444433211 22222 3578
Q ss_pred EEEeCCCCC--------C-----------------ChHHHHHH----HHh-c-cEEEEEEeCCC------CCchhHHHHH
Q 010392 155 NIIDTPGHS--------D-----------------FGGEVERI----LNM-V-EGVLLVVDSVE------GPMPQTRFVL 197 (512)
Q Consensus 155 ~liDtPG~~--------~-----------------~~~~~~~~----~~~-~-d~~llvida~~------g~~~~~~~~l 197 (512)
.++||-|+. + |.....-. +.. + =++++--|.+- .......+.+
T Consensus 94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI 173 (492)
T PF09547_consen 94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVI 173 (492)
T ss_pred EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence 899999862 1 11111100 111 1 12444445432 2234556778
Q ss_pred HHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 198 KKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 198 ~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
..+++.++|+++++|-.+-...+-.+..+++.+.+ ++||+++++..-. ...+..+|+.++-.
T Consensus 174 ~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY----------~vpVlpvnc~~l~--------~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 174 EELKEIGKPFVILLNSTKPYSEETQELAEELEEKY----------DVPVLPVNCEQLR--------EEDITRILEEVLYE 235 (492)
T ss_pred HHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHh----------CCcEEEeehHHcC--------HHHHHHHHHHHHhc
Confidence 89999999999999988844332233333333332 4577877764322 11455666666666
Q ss_pred CCCC
Q 010392 278 IPGP 281 (512)
Q Consensus 278 lp~p 281 (512)
+|-.
T Consensus 236 FPV~ 239 (492)
T PF09547_consen 236 FPVS 239 (492)
T ss_pred CCce
Confidence 6553
No 394
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.89 E-value=1.8e-05 Score=76.74 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=40.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
..++++|++|+|||||+|+|+........... ....+.+.+|.......+ .+ ..|+||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~--------~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDIS--------SKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcccccee--------ccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 46899999999999999999976432211100 011223345655555444 22 389999998765
No 395
>PRK14974 cell division protein FtsY; Provisional
Probab=97.89 E-value=9.1e-05 Score=74.75 Aligned_cols=151 Identities=16% Similarity=0.172 Sum_probs=75.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch---------hhhhcceeEEeeee-------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKNT------------- 145 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~ti~~~~~------------- 145 (512)
+...|+++|.+|+||||++..|......... .+--.-.|... ....-|+.+.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~--~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGF--SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC--eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 3567999999999999988888653211100 00000011000 00111222111000
Q ss_pred EEEECCeeEEEEeCCCCCCCh----HHHHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC
Q 010392 146 SITYNDTKINIIDTPGHSDFG----GEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA 219 (512)
Q Consensus 146 ~~~~~~~~i~liDtPG~~~~~----~~~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~ 219 (512)
.....+..+.||||+|..... .++....+ ..|..+||+|+..|- ...+......+.--.--+++||+|...
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~~- 293 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDADA- 293 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCCC-
Confidence 001234579999999976433 23333222 358899999987652 222222222221123577899999742
Q ss_pred CchhhHhhhHHHHHHhcCCccccccceeeeccccCcc
Q 010392 220 RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKA 256 (512)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~ 256 (512)
..-..+.-.. . ...|+.+++ +|++
T Consensus 294 ~~G~~ls~~~----~-------~~~Pi~~i~--~Gq~ 317 (336)
T PRK14974 294 KGGAALSIAY----V-------IGKPILFLG--VGQG 317 (336)
T ss_pred CccHHHHHHH----H-------HCcCEEEEe--CCCC
Confidence 2222222221 1 145788887 5763
No 396
>PRK12289 GTPase RsgA; Reviewed
Probab=97.88 E-value=4.9e-05 Score=77.31 Aligned_cols=84 Identities=26% Similarity=0.286 Sum_probs=59.4
Q ss_pred HHHhccEEEEEEeCCCCC-ch-hHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeee
Q 010392 172 ILNMVEGVLLVVDSVEGP-MP-QTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYA 249 (512)
Q Consensus 172 ~~~~~d~~llvida~~g~-~~-~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~ 249 (512)
++..+|.+++|+|+.+.. .. ....++..+...++|+++|+||+|+... ...+...+.+... +++++++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~---~~~~~~~~~~~~~-------g~~v~~i 155 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP---TEQQQWQDRLQQW-------GYQPLFI 155 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh---HHHHHHHHHHHhc-------CCeEEEE
Confidence 478899999999987643 22 3356666666778999999999999642 1122333333222 3468999
Q ss_pred ccccCccCCCCCCcCCCchhhHHHHH
Q 010392 250 SGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 250 Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
||++|. |+++|++.+.
T Consensus 156 SA~tg~----------GI~eL~~~L~ 171 (352)
T PRK12289 156 SVETGI----------GLEALLEQLR 171 (352)
T ss_pred EcCCCC----------CHHHHhhhhc
Confidence 999998 8888887764
No 397
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.85 E-value=4.8e-05 Score=71.10 Aligned_cols=124 Identities=21% Similarity=0.290 Sum_probs=65.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchh---------hhhcceeEEeee-------------eEE
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL---------ERERGITILSKN-------------TSI 147 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~---------e~~~g~ti~~~~-------------~~~ 147 (512)
+.|+++|++|+||||.+-.|....... ...+.---.|.... .+.-|+.+.... ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 468999999999999999987653322 11111001121110 011122211100 001
Q ss_pred EECCeeEEEEeCCCCCCChH----HHHHHHHh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 148 TYNDTKINIIDTPGHSDFGG----EVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 148 ~~~~~~i~liDtPG~~~~~~----~~~~~~~~--~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
..++..+.||||||...... ++...+.. .+-++||+|++.+.. ............++. -++++|+|..
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTC-EEEEESTTSS
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhhcccCc-eEEEEeecCC
Confidence 11346799999999765443 33333332 467999999887633 333444444444444 4569999964
No 398
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.84 E-value=2.3e-05 Score=78.97 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=42.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
..+++++|-+|+|||||||+|++........-+ |+|.......+. ..+.|+||||..
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P---------------G~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP---------------GTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC---------------ceecceEEEEcC---CCeEEecCCCcC
Confidence 466999999999999999999988664332222 666655544443 348999999974
No 399
>PRK12289 GTPase RsgA; Reviewed
Probab=97.82 E-value=2.1e-05 Score=80.05 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=39.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.++|+|.+|+|||||+|+|+........... ....+.+.+|....... ..+ ...|+||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs--------~~~~rGrHTT~~~~l~~--l~~-g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVS--------GKLGRGRHTTRHVELFE--LPN-GGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccccccc--------CCCCCCCCcCceeEEEE--CCC-CcEEEeCCCcccc
Confidence 4899999999999999999965433211100 11122333455443333 322 1379999998765
No 400
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.82 E-value=0.00016 Score=59.00 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=63.4
Q ss_pred eeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcc-cc
Q 010392 290 QMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDI-QI 368 (512)
Q Consensus 290 ~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~-~~ 368 (512)
.+.|.....+++.|.++..-|.+|+|++||.+.....- .||+.|+... ..++++|.||+.|-|.|++++ ..
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~-----gkVr~l~d~~---g~~v~~a~Ps~~V~I~G~~~~P~a 73 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTY-----GKVRAMFDEN---GKRVKEAGPSTPVEILGLKGVPQA 73 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccc-----cEEEEEECCC---CCCCCEECCCCcEEEcCCCCCCCC
Confidence 46788888999999999999999999999999875432 3888987544 468999999999999998876 56
Q ss_pred CCeEec
Q 010392 369 GETIAD 374 (512)
Q Consensus 369 Gdtl~~ 374 (512)
||.+..
T Consensus 74 Gd~~~~ 79 (95)
T cd03702 74 GDKFLV 79 (95)
T ss_pred CCEEEE
Confidence 877653
No 401
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.80 E-value=6.9e-05 Score=67.26 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=37.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
....+++++|.+|+|||||+|+|.+....... .. .|.|..... +. .+..+.+|||||.
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~-~~--------------~~~t~~~~~--~~-~~~~~~~~DtpGi 156 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTS-PS--------------PGYTKGEQL--VK-ITSKIYLLDTPGV 156 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccC-CC--------------CCeeeeeEE--EE-cCCCEEEEECcCC
Confidence 34678999999999999999999864322111 11 144433221 12 2347999999994
No 402
>PRK00098 GTPase RsgA; Reviewed
Probab=97.77 E-value=7.5e-05 Score=74.61 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=58.1
Q ss_pred HHHhccEEEEEEeCCCCCc--hhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeee
Q 010392 172 ILNMVEGVLLVVDSVEGPM--PQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYA 249 (512)
Q Consensus 172 ~~~~~d~~llvida~~g~~--~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~ 249 (512)
.+..+|.+++|+|+.+... .....++..+...++|+++|+||+|+... .....+..+.+... .++++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~--~~~~~~~~~~~~~~-------g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD--LEEARELLALYRAI-------GYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC--HHHHHHHHHHHHHC-------CCeEEEE
Confidence 4678999999999875422 23356666677788999999999998632 12222233333222 3478999
Q ss_pred ccccCccCCCCCCcCCCchhhHHHH
Q 010392 250 SGIQGKAGLSPDNLADDLGPLFESI 274 (512)
Q Consensus 250 Sa~~g~~~~~~~~~~~gi~~Ll~~i 274 (512)
||++|. |+++|++.+
T Consensus 148 SA~~g~----------gi~~L~~~l 162 (298)
T PRK00098 148 SAKEGE----------GLDELKPLL 162 (298)
T ss_pred eCCCCc----------cHHHHHhhc
Confidence 999998 888887765
No 403
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.74 E-value=4.5e-05 Score=75.81 Aligned_cols=65 Identities=25% Similarity=0.388 Sum_probs=40.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
..++++|++|+|||||+|+|++........ + . ....+.+++|.......+.. ...++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~--v----~--~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGE--I----S--EKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccc--e----e--ccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 579999999999999999999764432111 1 0 01112233455444333322 2379999999776
No 404
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.73 E-value=8.6e-05 Score=76.19 Aligned_cols=100 Identities=19% Similarity=0.154 Sum_probs=64.9
Q ss_pred CCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc--hhhHhhhHHHHHHhcCCc
Q 010392 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP--DYVINSTFELFIELNATD 239 (512)
Q Consensus 162 ~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 239 (512)
.++|...+..+...++++++|+|+.+.......++.+.+ .+.|+++|+||+|+..... +...+.+.+.+...+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~- 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK- 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC-
Confidence 346777777777889999999998764433333333222 2689999999999975321 22222233333333321
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
...++++||++|+ |+++|++.+.++
T Consensus 127 ---~~~i~~vSAk~g~----------gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 ---PVDIILVSAKKGN----------GIDELLDKIKKA 151 (360)
T ss_pred ---cCcEEEecCCCCC----------CHHHHHHHHHHH
Confidence 0137899999999 889999888765
No 405
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=97.72 E-value=0.0003 Score=54.97 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=51.7
Q ss_pred cceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCCc
Q 010392 288 ALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGIDD 365 (512)
Q Consensus 288 p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~~ 365 (512)
|-.+.|...+.-.... ++.|+|..|+|++|..| .|.. ..+|.+| ..+++++++|.+||-|++ .+.-+
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~~--iG~I~sI----e~~~k~v~~A~~G~eVai~Ieg~~~ 72 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGRK--IGRIKSI----EDNGKNVDEAKKGDEVAISIEGPTQ 72 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSSC--EEEEEEE----EETTEEESEEETT-EEEEEEET--T
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCEE--EEEEEEe----EECCcCccccCCCCEEEEEEeCCcc
Confidence 4445555555555566 77789999999999999 4433 3577777 577789999999999999 34447
Q ss_pred cccCCeEe
Q 010392 366 IQIGETIA 373 (512)
Q Consensus 366 ~~~Gdtl~ 373 (512)
+.-||+|.
T Consensus 73 i~eGDiLy 80 (81)
T PF14578_consen 73 IKEGDILY 80 (81)
T ss_dssp B-TT-EEE
T ss_pred CCCCCEEe
Confidence 88899874
No 406
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00023 Score=75.08 Aligned_cols=127 Identities=21% Similarity=0.231 Sum_probs=64.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchh---h------hhcceeEEeeeeE-------EEECCe
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL---E------RERGITILSKNTS-------ITYNDT 152 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~---e------~~~g~ti~~~~~~-------~~~~~~ 152 (512)
...|+|+|+.|+||||++..|............+.-.-.|.... + ..-|+.+...... -...++
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 46899999999999999999876422111001111001111110 0 0112211111000 012356
Q ss_pred eEEEEeCCCCCCChHHHHH---HHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 153 KINIIDTPGHSDFGGEVER---ILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 153 ~i~liDtPG~~~~~~~~~~---~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
.+.||||||.......... .+. .....++|+++..+... ..+.++..... .+.-+|+||+|..
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~D-l~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSD-LDEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhH-HHHHHHHHHhh-CCeEEEEecCcCc
Confidence 8999999997543322111 111 12346888888764322 23344433332 4677899999963
No 407
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.71 E-value=3.4e-05 Score=70.67 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=43.5
Q ss_pred eeEEEEeCCCCCCC------hHHHHHHHHhcc---EEEEEEeCCCC-----CchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 152 TKINIIDTPGHSDF------GGEVERILNMVE---GVLLVVDSVEG-----PMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 152 ~~i~liDtPG~~~~------~~~~~~~~~~~d---~~llvida~~g-----~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
..+.++|+||+.+. .....+.+..-+ ++++++|+.-- ........+..+....+|.|=|++|||+.
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 36899999998763 233334444432 37788886531 11223334455556689999999999997
Q ss_pred CC
Q 010392 218 SA 219 (512)
Q Consensus 218 ~~ 219 (512)
..
T Consensus 178 k~ 179 (273)
T KOG1534|consen 178 KD 179 (273)
T ss_pred hh
Confidence 53
No 408
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.70 E-value=7e-05 Score=74.43 Aligned_cols=84 Identities=20% Similarity=0.128 Sum_probs=58.0
Q ss_pred HHHhccEEEEEEeCCCCC-c-hhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeee
Q 010392 172 ILNMVEGVLLVVDSVEGP-M-PQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYA 249 (512)
Q Consensus 172 ~~~~~d~~llvida~~g~-~-~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~ 249 (512)
.+..+|.+++|+|+.+.. . .....++..+...++|+++|+||+|+.... +. ......+.. ..++++++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~--~~-~~~~~~~~~-------~g~~v~~v 144 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE--EE-ELELVEALA-------LGYPVLAV 144 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH--HH-HHHHHHHHh-------CCCeEEEE
Confidence 467789999999998764 2 344556777777889999999999986431 11 111111111 23579999
Q ss_pred ccccCccCCCCCCcCCCchhhHHHHH
Q 010392 250 SGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 250 Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
||+++. |+++|.+.+.
T Consensus 145 SA~~g~----------gi~~L~~~L~ 160 (287)
T cd01854 145 SAKTGE----------GLDELREYLK 160 (287)
T ss_pred ECCCCc----------cHHHHHhhhc
Confidence 999998 8888776653
No 409
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.67 E-value=0.00048 Score=62.99 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=50.0
Q ss_pred eEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCC
Q 010392 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPS 218 (512)
Q Consensus 153 ~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~ 218 (512)
.+.|||||+..+. .....+..+|.+|+++++...........++.+...+.+ ..+|+|+.|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7999999986543 456678899999999998877666677777777776654 678999998654
No 410
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.65 E-value=0.00057 Score=70.69 Aligned_cols=134 Identities=15% Similarity=0.281 Sum_probs=85.0
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc------cee----------eeee------ccchhh----------
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ------TVK----------ERIM------DSNDLE---------- 133 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~------~~~----------~~~~------d~~~~e---------- 133 (512)
.++.++|+++|+..+||||.++.+......+...+ ++. ..+- |-++++
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 45678999999999999999999976543322111 111 1111 211111
Q ss_pred ------hhcceeEEeeeeEEEECC---eeEEEEeCCCCCC-------------ChHHHHHHHHhccEEEEEEe-C-CCCC
Q 010392 134 ------RERGITILSKNTSITYND---TKINIIDTPGHSD-------------FGGEVERILNMVEGVLLVVD-S-VEGP 189 (512)
Q Consensus 134 ------~~~g~ti~~~~~~~~~~~---~~i~liDtPG~~~-------------~~~~~~~~~~~~d~~llvid-a-~~g~ 189 (512)
-..|.|+......+..+| .+..++|.||... .......++..-+++|+||- + .+..
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 124667777666666655 3789999999742 22334556667788999885 2 2222
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeccCCCCC
Q 010392 190 MPQTRFVLKKALEFGHAVVVVVNKIDRPSA 219 (512)
Q Consensus 190 ~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~ 219 (512)
....-.+...+...|...|+|++|.|+.+.
T Consensus 465 RSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 RSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 223335556667778899999999999754
No 411
>PRK12288 GTPase RsgA; Reviewed
Probab=97.64 E-value=0.00022 Score=72.54 Aligned_cols=87 Identities=15% Similarity=0.244 Sum_probs=59.2
Q ss_pred HHhccEEEEEEeCCCCCch-hHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeecc
Q 010392 173 LNMVEGVLLVVDSVEGPMP-QTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASG 251 (512)
Q Consensus 173 ~~~~d~~llvida~~g~~~-~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa 251 (512)
...+|.+++|++....... ....++..+...++|.++|+||+|+..........+..+.+..+ .++++++||
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-------g~~v~~vSA 190 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-------GYRVLMVSS 190 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-------CCeEEEEeC
Confidence 3558999999987654332 34456666777789999999999997532112222333333222 357999999
Q ss_pred ccCccCCCCCCcCCCchhhHHHHHH
Q 010392 252 IQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 252 ~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
+++. |+++|++.|..
T Consensus 191 ~tg~----------GideL~~~L~~ 205 (347)
T PRK12288 191 HTGE----------GLEELEAALTG 205 (347)
T ss_pred CCCc----------CHHHHHHHHhh
Confidence 9999 99999988764
No 412
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.64 E-value=7.8e-05 Score=63.59 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
+|+++|..|+|||+|+.++....+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc
Confidence 689999999999999999965544
No 413
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.62 E-value=0.00044 Score=69.59 Aligned_cols=143 Identities=17% Similarity=0.230 Sum_probs=74.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeee----eccchhhhhc--ceeEEeeeeEEEEC-----------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERI----MDSNDLERER--GITILSKNTSITYN----------- 150 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~----~d~~~~e~~~--g~ti~~~~~~~~~~----------- 150 (512)
.++-.+|.|.-|||||||+++|+..... .+..-+.+.+ .|..-.+... -.++......+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~-~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~ 81 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHG-YKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccC-CcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHH
Confidence 3566789999999999999999965321 1111111111 1211111110 11111122222211
Q ss_pred --------CeeEEEEeCCCCCCChHHHHHHHH--------hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEecc
Q 010392 151 --------DTKINIIDTPGHSDFGGEVERILN--------MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKI 214 (512)
Q Consensus 151 --------~~~i~liDtPG~~~~~~~~~~~~~--------~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~ 214 (512)
.....+|.|.|..+-......... ..|+++.|+|+........ .......+....=++++||+
T Consensus 82 ~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~-~~~~~~~Qi~~AD~IvlnK~ 160 (318)
T PRK11537 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKT 160 (318)
T ss_pred HHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcc-ccHHHHHHHHhCCEEEEecc
Confidence 235689999999875544433321 2478999999876322111 11111122223458899999
Q ss_pred CCCCCCchhhHhhhHHHHHHhcC
Q 010392 215 DRPSARPDYVINSTFELFIELNA 237 (512)
Q Consensus 215 Dl~~~~~~~~~~~~~~~~~~~~~ 237 (512)
|+.... +++.+.++.+..
T Consensus 161 Dl~~~~-----~~~~~~l~~lnp 178 (318)
T PRK11537 161 DVAGEA-----EKLRERLARINA 178 (318)
T ss_pred ccCCHH-----HHHHHHHHHhCC
Confidence 988632 355555555443
No 414
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.61 E-value=0.0011 Score=66.62 Aligned_cols=150 Identities=21% Similarity=0.230 Sum_probs=83.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeee----ecc-chhh--hhcceeEEeeeeEEE--------------
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERI----MDS-NDLE--RERGITILSKNTSIT-------------- 148 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~----~d~-~~~e--~~~g~ti~~~~~~~~-------------- 148 (512)
+..+|.|--|||||||+++|+.+... .+..-+.+.+ .|. .-.. .+.-..+...+..++
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g-~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDG-KKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCC-CcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 44678999999999999999987652 1111111111 110 0000 011111222222222
Q ss_pred -ECCeeEEEEeCCCCCCChHHHHHHHH--------hccEEEEEEeCCCCCchhH---HHHHHHHHHcCCcEEEEEeccCC
Q 010392 149 -YNDTKINIIDTPGHSDFGGEVERILN--------MVEGVLLVVDSVEGPMPQT---RFVLKKALEFGHAVVVVVNKIDR 216 (512)
Q Consensus 149 -~~~~~i~liDtPG~~~~~~~~~~~~~--------~~d~~llvida~~g~~~~~---~~~l~~~~~~~~p~ivviNK~Dl 216 (512)
-......+|.|-|..+=......... ..|+++-|||+........ .....++ ...=++++||.|+
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---a~AD~ivlNK~Dl 157 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---AFADVIVLNKTDL 157 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH---HhCcEEEEecccC
Confidence 11246789999998775433333322 2478999999887433222 1122222 2345899999999
Q ss_pred CCCCchhhHhhhHHHHHHhcCCccccccceeeecc
Q 010392 217 PSARPDYVINSTFELFIELNATDEQCDFQAIYASG 251 (512)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa 251 (512)
.+.. .++.+++.+..+... .+++..|.
T Consensus 158 v~~~---~l~~l~~~l~~lnp~-----A~i~~~~~ 184 (323)
T COG0523 158 VDAE---ELEALEARLRKLNPR-----ARIIETSY 184 (323)
T ss_pred CCHH---HHHHHHHHHHHhCCC-----CeEEEccc
Confidence 8754 266666666666543 35676665
No 415
>PRK13796 GTPase YqeH; Provisional
Probab=97.61 E-value=8.9e-05 Score=76.19 Aligned_cols=62 Identities=26% Similarity=0.360 Sum_probs=40.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
.+++.++|.+|+|||||+|+|+..........+ .....|+|.......+ .+ ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~----------~s~~pGTT~~~~~~~l--~~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVIT----------TSRFPGTTLDKIEIPL--DD-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEE----------ecCCCCccceeEEEEc--CC-CcEEEECCCcc
Confidence 357999999999999999999975421111100 1223477766544333 22 35899999985
No 416
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.59 E-value=0.00061 Score=56.60 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=65.5
Q ss_pred eeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecC-------ceeecceec--CCCEEEE
Q 010392 290 QMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKF-------SRVSAEIVA--AGDICAV 360 (512)
Q Consensus 290 ~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~-------~~~~v~~a~--aGdiv~i 360 (512)
.+.|..+..+++.|.++..-|++|+|+.||.|.+....... .+||+.|+...+. ....++++. +|--+.+
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi-~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPI-VTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCc-eEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 45678888999999999999999999999999998876543 4588888776653 224677777 6666666
Q ss_pred ccCCccccCCeEe
Q 010392 361 CGIDDIQIGETIA 373 (512)
Q Consensus 361 ~~l~~~~~Gdtl~ 373 (512)
.+++++..|+.|.
T Consensus 81 ~gL~~v~aG~~~~ 93 (110)
T cd03703 81 PDLEKAIAGSPLL 93 (110)
T ss_pred CCCccccCCCEEE
Confidence 7898887888764
No 417
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.00033 Score=66.80 Aligned_cols=129 Identities=17% Similarity=0.196 Sum_probs=76.2
Q ss_pred HHHHhhhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeE
Q 010392 77 AEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKI 154 (512)
Q Consensus 77 ~~~~~~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i 154 (512)
.+..++.......+||+.+|..|-|||||++.|....+........ ..++-.......+.-.+ .++
T Consensus 30 dQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~------------~~~V~L~~~TyelqEsnvrlKL 97 (406)
T KOG3859|consen 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHT------------LPNVKLQANTYELQESNVRLKL 97 (406)
T ss_pred HHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccC------------CCCceeecchhhhhhcCeeEEE
Confidence 3444555566789999999999999999999998766543222111 01122222222222222 378
Q ss_pred EEEeCCCCCCCh--------------HHHHHHHH---------------hccEEEEEEeCC-CCCchhHHHHHHHHHHcC
Q 010392 155 NIIDTPGHSDFG--------------GEVERILN---------------MVEGVLLVVDSV-EGPMPQTRFVLKKALEFG 204 (512)
Q Consensus 155 ~liDtPG~~~~~--------------~~~~~~~~---------------~~d~~llvida~-~g~~~~~~~~l~~~~~~~ 204 (512)
+++||.|+.|-. .....|+. ..+++++.|..+ +++...+.-.++.+. .+
T Consensus 98 tiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-sk 176 (406)
T KOG3859|consen 98 TIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SK 176 (406)
T ss_pred EEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hh
Confidence 999999986521 11222221 246788888855 355444444444433 24
Q ss_pred CcEEEEEeccCCCC
Q 010392 205 HAVVVVVNKIDRPS 218 (512)
Q Consensus 205 ~p~ivviNK~Dl~~ 218 (512)
+.+|-++-|.|...
T Consensus 177 VNIIPvIAKaDtis 190 (406)
T KOG3859|consen 177 VNIIPVIAKADTIS 190 (406)
T ss_pred hhhHHHHHHhhhhh
Confidence 67888899999654
No 418
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00035 Score=65.34 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH--
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG-- 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~-- 167 (512)
++|.++|+--+||||+-....++..... +.++. ....+|.+ ++...=..+.+||-||+.+|..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne------TlflE-----STski~~d----~is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE------TLFLE-----STSKITRD----HISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc------eeEee-----ccCcccHh----hhhhhhcceEEeecCCccccCCCc
Confidence 3499999999999998877665543211 11111 11111111 1111123688999999987653
Q ss_pred -HHHHHHHhccEEEEEEeCCCCCchhHH-HHHHHHHHc----CCcEEEEEeccCCCCCC
Q 010392 168 -EVERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALEF----GHAVVVVVNKIDRPSAR 220 (512)
Q Consensus 168 -~~~~~~~~~d~~llvida~~g~~~~~~-~~l~~~~~~----~~p~ivviNK~Dl~~~~ 220 (512)
.....++.+.+.++|||+.+...+... -++...+.+ ++.+=|++.|.|-...+
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 345567889999999999886554333 333344444 35688999999987544
No 419
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.50 E-value=0.00042 Score=72.49 Aligned_cols=123 Identities=20% Similarity=0.276 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccc-h--------hhhhcceeEEeeeeE----------E-
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN-D--------LERERGITILSKNTS----------I- 147 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~-~--------~e~~~g~ti~~~~~~----------~- 147 (512)
....|+++|.+|+||||++..|......... .+.--..|.. + ....-++.+...... +
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~--kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGL--KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCC--eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4678999999999999999998754221111 1100001110 0 011112222111000 0
Q ss_pred EECCeeEEEEeCCCCCCChHHH----HH--HHHhccEEEEEEeCCCCCchhHHHHHHHHHHcC--Cc-EEEEEeccCCC
Q 010392 148 TYNDTKINIIDTPGHSDFGGEV----ER--ILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG--HA-VVVVVNKIDRP 217 (512)
Q Consensus 148 ~~~~~~i~liDtPG~~~~~~~~----~~--~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~--~p-~ivviNK~Dl~ 217 (512)
...+..+.||||||........ .. .+..+|.+++|+|+..+- ..+..++.++ ++ .-+|+||+|..
T Consensus 172 ~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 172 KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred HhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 0123479999999976544332 22 233578999999988762 2233334332 33 36788999964
No 420
>PRK00098 GTPase RsgA; Reviewed
Probab=97.49 E-value=0.00015 Score=72.37 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=37.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
..++++|++|+|||||+|+|++...... +.+. . ...+.+.+|.......+ .+ ...++||||...|
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~--g~v~----~--~~~~G~htT~~~~~~~~--~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKT--GEIS----E--ALGRGKHTTTHVELYDL--PG-GGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCC--ccee----c--cCCCCCcccccEEEEEc--CC-CcEEEECCCcCcc
Confidence 4689999999999999999987543221 1110 0 00111223333332222 22 3489999998753
No 421
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00085 Score=68.40 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=65.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch---hhh------hcceeEEeeee---------EEE-
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---LER------ERGITILSKNT---------SIT- 148 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~---~e~------~~g~ti~~~~~---------~~~- 148 (512)
..+.|+++|+.|+||||++..|........ ..+.-.-.|... .++ .-|+.+..... .+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 347899999999999999999975432111 011000011110 000 11222211000 000
Q ss_pred ECCeeEEEEeCCCCCCCh----HHHHHHHHh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC
Q 010392 149 YNDTKINIIDTPGHSDFG----GEVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (512)
Q Consensus 149 ~~~~~i~liDtPG~~~~~----~~~~~~~~~--~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~ 218 (512)
..+..+.||||||..... .++...+.. .+.++||+|++.+. ......++.....+ .-=++++|+|-..
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~-idglI~TKLDET~ 391 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDETA 391 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCC-CCEEEEEcccCCC
Confidence 113589999999975432 333333332 36689999986532 22233333333322 2456789999653
No 422
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.39 E-value=0.0012 Score=58.21 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=65.6
Q ss_pred EEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHH
Q 010392 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERIL 173 (512)
Q Consensus 94 vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~ 173 (512)
.-|..|+||||+.-.|........ .. -.+.|.+.. +-.+ .+.+.++|||+.. .......+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~--~~--~~~vd~D~~----~~~~----------~yd~VIiD~p~~~--~~~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLG--KR--VLLLDADLG----LANL----------DYDYIIIDTGAGI--SDNVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCC--Cc--EEEEECCCC----CCCC----------CCCEEEEECCCCC--CHHHHHHH
Confidence 456789999999888865532111 11 112232211 0011 1678999999864 34456789
Q ss_pred HhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCcEEEEEeccCC
Q 010392 174 NMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDR 216 (512)
Q Consensus 174 ~~~d~~llvida~~g~~~~~~~~l~~~~~~--~~p~ivviNK~Dl 216 (512)
..+|.++++++.+......+...++.+... ..++.+|+|+.+.
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999999999998765555555556555443 3468899999974
No 423
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.0019 Score=67.70 Aligned_cols=125 Identities=17% Similarity=0.234 Sum_probs=64.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchh-----------hhhcceeEEeeeeE-------EEEC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL-----------ERERGITILSKNTS-------ITYN 150 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~-----------e~~~g~ti~~~~~~-------~~~~ 150 (512)
...++++|++|+||||++..|............+ .+.+.++. .+..++.+...... -...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V--~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKV--ALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeE--EEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 3579999999999999999886543200000111 11111110 00112221111000 0123
Q ss_pred CeeEEEEeCCCCCCCh----HHHHHHHHhc---cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 151 DTKINIIDTPGHSDFG----GEVERILNMV---EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~----~~~~~~~~~~---d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
+..+.||||||..... .++...+..+ .-+.+|++++.+. ....+.+......+. --++++|+|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 5689999999986543 2333344422 3568889987542 233333444433332 36789999964
No 424
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.38 E-value=0.0019 Score=54.01 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=64.7
Q ss_pred EEEEe-CCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 92 IAIIA-HVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 92 V~vvG-~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
|+++| ..|+||||+.-.|......... ......|.++... ..+.++|||+.... ...
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~---~~~~l~d~d~~~~-----------------~D~IIiDtpp~~~~--~~~ 59 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAG---RRVLLVDLDLQFG-----------------DDYVVVDLGRSLDE--VSL 59 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCC---CcEEEEECCCCCC-----------------CCEEEEeCCCCcCH--HHH
Confidence 34444 6889999988887654222100 0112233222211 17899999987543 455
Q ss_pred HHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCC----cEEEEEec
Q 010392 171 RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH----AVVVVVNK 213 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~----p~ivviNK 213 (512)
..+..+|.++++++............++.+++.+. ++.+|+|+
T Consensus 60 ~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 60 AALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 67899999999999887766777777777776653 46678875
No 425
>PRK01889 GTPase RsgA; Reviewed
Probab=97.37 E-value=0.00078 Score=68.99 Aligned_cols=82 Identities=21% Similarity=0.150 Sum_probs=58.9
Q ss_pred HHhccEEEEEEeCCCCCch-hHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeecc
Q 010392 173 LNMVEGVLLVVDSVEGPMP-QTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASG 251 (512)
Q Consensus 173 ~~~~d~~llvida~~g~~~-~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa 251 (512)
...+|.+++|+++...... ....++..+...+++.++|+||+|+.+. .....+ .+..+ ...++++++|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~~----~~~~~-----~~g~~Vi~vSa 179 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKIA----EVEAL-----APGVPVLAVSA 179 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHHH----HHHHh-----CCCCcEEEEEC
Confidence 4568999999999766655 4557777888889999999999999743 111222 22222 12457999999
Q ss_pred ccCccCCCCCCcCCCchhhHHHH
Q 010392 252 IQGKAGLSPDNLADDLGPLFESI 274 (512)
Q Consensus 252 ~~g~~~~~~~~~~~gi~~Ll~~i 274 (512)
++|. |++.|...+
T Consensus 180 ~~g~----------gl~~L~~~L 192 (356)
T PRK01889 180 LDGE----------GLDVLAAWL 192 (356)
T ss_pred CCCc----------cHHHHHHHh
Confidence 9998 888877765
No 426
>PRK10867 signal recognition particle protein; Provisional
Probab=97.36 E-value=0.0011 Score=69.15 Aligned_cols=124 Identities=23% Similarity=0.274 Sum_probs=62.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCC-cC-ccceeeeeeccc-h--------hhhhcceeEEeeee-----------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVF-RD-NQTVKERIMDSN-D--------LERERGITILSKNT----------- 145 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~-~~-~~~~~~~~~d~~-~--------~e~~~g~ti~~~~~----------- 145 (512)
....|+++|.+|+||||++..|....... .. ...+. .|.. + .....|+.+.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~---~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA---ADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE---ccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 35678999999999999887776532111 00 00110 0100 0 01112332221100
Q ss_pred --EEEECCeeEEEEeCCCCCCChH----HHHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCC
Q 010392 146 --SITYNDTKINIIDTPGHSDFGG----EVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDR 216 (512)
Q Consensus 146 --~~~~~~~~i~liDtPG~~~~~~----~~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl 216 (512)
.....++.+.|+||||...... ++..... ..+.+++|+|+..+ ...........+ .++ .-+|+||+|-
T Consensus 176 ~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred HHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 0012346799999999653322 2222222 35778999998653 222222222222 232 4567899995
Q ss_pred C
Q 010392 217 P 217 (512)
Q Consensus 217 ~ 217 (512)
.
T Consensus 253 ~ 253 (433)
T PRK10867 253 D 253 (433)
T ss_pred c
Confidence 3
No 427
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.001 Score=69.05 Aligned_cols=127 Identities=18% Similarity=0.169 Sum_probs=63.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCC---cCcccee-e--ee--eccc-hhhhhcceeEEeeee-------EEEECCe
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVF---RDNQTVK-E--RI--MDSN-DLERERGITILSKNT-------SITYNDT 152 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~---~~~~~~~-~--~~--~d~~-~~e~~~g~ti~~~~~-------~~~~~~~ 152 (512)
...|+++|+.|+||||++..|.+..... .....+. + ++ .+.. ...+-.|+....... .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 4579999999999999999887642110 1111110 0 00 0000 000111222211110 0123456
Q ss_pred eEEEEeCCCCCCChHHHHHH---HHh---ccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 153 KINIIDTPGHSDFGGEVERI---LNM---VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 153 ~i~liDtPG~~~~~~~~~~~---~~~---~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
.+.+|||+|..........- +.. ..-.+||+|++.+.. ...+++......+ .-=++++|+|-.
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~-~~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD-TLDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH-HHHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 88999999976543322222 221 234789999886422 2223333222222 245678999964
No 428
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.35 E-value=0.0004 Score=63.91 Aligned_cols=141 Identities=26% Similarity=0.273 Sum_probs=68.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeee----ccchhhhhcceeE-EeeeeEE----------------EE
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIM----DSNDLERERGITI-LSKNTSI----------------TY 149 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~----d~~~~e~~~g~ti-~~~~~~~----------------~~ 149 (512)
-++|.|..|||||||+++|+.......+..-+.+.+. |..-.+ +.|..+ ......+ ..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~-~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQ-EDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHH-TTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhc-ccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 3689999999999999999952111111111111111 111111 112221 1111111 01
Q ss_pred C--CeeEEEEeCCCCCCChHHH-----HHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHcCCcEEEEEeccCCCCCCc
Q 010392 150 N--DTKINIIDTPGHSDFGGEV-----ERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGHAVVVVVNKIDRPSARP 221 (512)
Q Consensus 150 ~--~~~i~liDtPG~~~~~~~~-----~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~ 221 (512)
. .....||.+.|..+-...+ ....-..+.++.|+|+..-. ....... ...+...--++++||+|+.+.+
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~--~~~Qi~~ADvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPEL--LREQIAFADVIVLNKIDLVSDE- 157 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHH--HHHHHCT-SEEEEE-GGGHHHH-
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhh--hhhcchhcCEEEEeccccCChh-
Confidence 1 3478899999977654431 11122357899999986521 1111111 1222234568999999987532
Q ss_pred hhhHhhhHHHHHHhc
Q 010392 222 DYVINSTFELFIELN 236 (512)
Q Consensus 222 ~~~~~~~~~~~~~~~ 236 (512)
+.++.+.+..+++.
T Consensus 158 -~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 -QKIERVREMIRELN 171 (178)
T ss_dssp ---HHHHHHHHHHH-
T ss_pred -hHHHHHHHHHHHHC
Confidence 23355555555544
No 429
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.33 E-value=0.0011 Score=69.10 Aligned_cols=124 Identities=24% Similarity=0.268 Sum_probs=63.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC-CCcC-ccceeeeeeccch---------hhhhcceeEEeeee-----------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK-VFRD-NQTVKERIMDSND---------LERERGITILSKNT----------- 145 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~-~~~~-~~~~~~~~~d~~~---------~e~~~g~ti~~~~~----------- 145 (512)
....++++|++|+||||++-.|..... .... ...+ -.|... .....|+.+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV---~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV---ACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE---eccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 356789999999999999888865421 0011 1001 011000 01111222211100
Q ss_pred --EEEECCeeEEEEeCCCCCCChHHHHH----H--HHhccEEEEEEeCCCCCchhHHHHHHHHHH-cCCcEEEEEeccCC
Q 010392 146 --SITYNDTKINIIDTPGHSDFGGEVER----I--LNMVEGVLLVVDSVEGPMPQTRFVLKKALE-FGHAVVVVVNKIDR 216 (512)
Q Consensus 146 --~~~~~~~~i~liDtPG~~~~~~~~~~----~--~~~~d~~llvida~~g~~~~~~~~l~~~~~-~~~p~ivviNK~Dl 216 (512)
.....++.+.|+||||.......... . .-..|.++||+|+..+ ............ .+ ..=+++||+|.
T Consensus 175 l~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~-i~giIlTKlD~ 251 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLG-LTGVVLTKLDG 251 (428)
T ss_pred HHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCC-CCEEEEeCccC
Confidence 00123457999999996543322222 1 1236789999998754 222333332222 22 24667999995
Q ss_pred C
Q 010392 217 P 217 (512)
Q Consensus 217 ~ 217 (512)
.
T Consensus 252 ~ 252 (428)
T TIGR00959 252 D 252 (428)
T ss_pred c
Confidence 3
No 430
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.31 E-value=0.0016 Score=53.17 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=61.6
Q ss_pred eeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCc-ccc
Q 010392 290 QMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD-IQI 368 (512)
Q Consensus 290 ~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~-~~~ 368 (512)
.+.|.....+++.|.++..-|.+|+|++||.+...... .||+.++. .....+.+|.||+.+.+.|+++ ...
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~-----GkVr~~~d---~~g~~v~~a~Ps~~v~i~g~~~~p~a 73 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY-----GKIRTMVD---ENGKALLEAGPSTPVEILGLKDVPKA 73 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc-----ceEEEEEC---CCCCCccccCCCCCEEEeeecCCccC
Confidence 46788889999999999999999999999999875442 37888864 3456799999999999988765 556
Q ss_pred CCeEe
Q 010392 369 GETIA 373 (512)
Q Consensus 369 Gdtl~ 373 (512)
||.+.
T Consensus 74 Gd~~~ 78 (95)
T cd03701 74 GDGVL 78 (95)
T ss_pred CCEEE
Confidence 77664
No 431
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.31 E-value=0.002 Score=53.42 Aligned_cols=82 Identities=21% Similarity=0.166 Sum_probs=52.8
Q ss_pred EEEEe-CCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHH
Q 010392 92 IAIIA-HVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (512)
Q Consensus 92 V~vvG-~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 170 (512)
|++.| ..|+||||+.-.|........ . .-.+.|.++. +.+.++|+|+..+. ...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~--~--~vl~~d~d~~-------------------~d~viiD~p~~~~~--~~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG--K--RVLLIDLDPQ-------------------YDYIIIDTPPSLGL--LTR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC--C--cEEEEeCCCC-------------------CCEEEEeCcCCCCH--HHH
Confidence 56677 679999999988865432211 0 1112222211 57899999997543 344
Q ss_pred HHHHhccEEEEEEeCCCCCchhHHHHHH
Q 010392 171 RILNMVEGVLLVVDSVEGPMPQTRFVLK 198 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~~~~~~~~l~ 198 (512)
..+..+|.++++++...........+++
T Consensus 57 ~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 57 NALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred HHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 7889999999999987654444444443
No 432
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.31 E-value=0.0035 Score=65.85 Aligned_cols=160 Identities=17% Similarity=0.139 Sum_probs=84.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC-CCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH-SDF 165 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~-~~~ 165 (512)
.+.....++|..++|||.|++++++.........+. ....+++. ..+.....-+.+-|.+-. .++
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~------------~~~~avn~--v~~~g~~k~LiL~ei~~~~~~~ 488 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTT------------KPRYAVNS--VEVKGQQKYLILREIGEDDQDF 488 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCC------------CCceeeee--eeeccccceEEEeecCcccccc
Confidence 356678899999999999999999875543221111 00112222 222222334555555532 112
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHH-HHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKA-LEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~-~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
...-. ..||.+++++|.++... .-.....+.- ...++|+++|..|+|+....-+.-+.. .++..+++..
T Consensus 489 l~~ke---~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~----- 559 (625)
T KOG1707|consen 489 LTSKE---AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLP----- 559 (625)
T ss_pred ccCcc---ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCC-----
Confidence 11111 66999999999885322 1122222111 114689999999999975431122222 3333333332
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.| +.+|... . +-..++..|......|
T Consensus 560 ~P-~~~S~~~-~----------~s~~lf~kL~~~A~~P 585 (625)
T KOG1707|consen 560 PP-IHISSKT-L----------SSNELFIKLATMAQYP 585 (625)
T ss_pred CC-eeeccCC-C----------CCchHHHHHHHhhhCC
Confidence 23 3445442 2 2256777777655444
No 433
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.31 E-value=0.00051 Score=64.44 Aligned_cols=61 Identities=31% Similarity=0.481 Sum_probs=46.0
Q ss_pred eEEEEeCC-CCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcC-CcEEEEEeccCC
Q 010392 153 KINIIDTP-GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG-HAVVVVVNKIDR 216 (512)
Q Consensus 153 ~i~liDtP-G~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~-~p~ivviNK~Dl 216 (512)
.+.++||- |.+-|.. .....+|.+|.|+|.+.......++.-+...+.+ .++.+|+||.|-
T Consensus 135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred cEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 57777774 5554532 2356689999999988766666677777788889 799999999994
No 434
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.30 E-value=0.0036 Score=60.62 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=79.2
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhccee------------EEeeeeEEEEC---
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGIT------------ILSKNTSITYN--- 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~t------------i~~~~~~~~~~--- 150 (512)
..+++.-.+.|.-|+|||||+|.++..... .+..-+.+.+.|....|+.--.. .......+..+
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hg-KRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~g 132 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQHG-KRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNG 132 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCCC-ceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchH
Confidence 455676789999999999999999876543 22222234444443333321111 11122222222
Q ss_pred ------------CeeEEEEeCCCCCCChHHHHHHH--------HhccEEEEEEeCCCCCchhH----HHHHHH-HHHcCC
Q 010392 151 ------------DTKINIIDTPGHSDFGGEVERIL--------NMVEGVLLVVDSVEGPMPQT----RFVLKK-ALEFGH 205 (512)
Q Consensus 151 ------------~~~i~liDtPG~~~~~~~~~~~~--------~~~d~~llvida~~g~~~~~----~~~l~~-~~~~~~ 205 (512)
.....++.|.|..+-......+. -..|+++-|+||.+....-+ .-+|.. ..+.-.
T Consensus 133 vraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~ 212 (391)
T KOG2743|consen 133 VRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIAL 212 (391)
T ss_pred HHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhh
Confidence 23578999999987443322221 12589999999876321111 011111 111112
Q ss_pred cEEEEEeccCCCCCCchhhHhhhHHHHHHh
Q 010392 206 AVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (512)
Q Consensus 206 p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~ 235 (512)
.--+++||.|+... +.+.++++.+..+
T Consensus 213 AD~II~NKtDli~~---e~~~~l~q~I~~I 239 (391)
T KOG2743|consen 213 ADRIIMNKTDLVSE---EEVKKLRQRIRSI 239 (391)
T ss_pred hheeeeccccccCH---HHHHHHHHHHHHh
Confidence 23567899999864 4455555555443
No 435
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.29 E-value=0.00068 Score=79.89 Aligned_cols=116 Identities=22% Similarity=0.168 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc-cceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC---
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN-QTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS--- 163 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~-~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~--- 163 (512)
..+=.+|+|++|+|||||+... +..+..... ... .....|-|..+ . -|=..+-.+|||+|..
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~---------~~~~~~~t~~c---~-wwf~~~avliDtaG~y~~~ 175 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAA---------ALRGVGGTRNC---D-WWFTDEAVLIDTAGRYTTQ 175 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccc---------cccCCCCCccc---c-eEecCCEEEEcCCCccccC
Confidence 3456899999999999999876 222221110 000 00000111111 1 1223456899999942
Q ss_pred -----CChHHHHHHHH---------hccEEEEEEeCCCCC---ch-------hHHHHHHHHHH---cCCcEEEEEeccCC
Q 010392 164 -----DFGGEVERILN---------MVEGVLLVVDSVEGP---MP-------QTRFVLKKALE---FGHAVVVVVNKIDR 216 (512)
Q Consensus 164 -----~~~~~~~~~~~---------~~d~~llvida~~g~---~~-------~~~~~l~~~~~---~~~p~ivviNK~Dl 216 (512)
.....|...+. -.+|+|++||+.+=. .. ..+..+..+.+ ..+|+.|+++|||+
T Consensus 176 ~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dl 255 (1169)
T TIGR03348 176 DSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL 255 (1169)
T ss_pred CCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchh
Confidence 12234544443 269999999966421 11 12222232222 25799999999998
Q ss_pred C
Q 010392 217 P 217 (512)
Q Consensus 217 ~ 217 (512)
.
T Consensus 256 l 256 (1169)
T TIGR03348 256 L 256 (1169)
T ss_pred h
Confidence 6
No 436
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.25 E-value=0.0027 Score=64.66 Aligned_cols=142 Identities=22% Similarity=0.191 Sum_probs=73.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeee----eccchhhhhcce-------eEEeee--eEEE-------
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERI----MDSNDLERERGI-------TILSKN--TSIT------- 148 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~----~d~~~~e~~~g~-------ti~~~~--~~~~------- 148 (512)
++-.+|.|.-|+|||||+++|+..... .+...+.+.+ .|..-.. ..+. .+.... ..+.
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~~~~-~~iavi~Ne~G~~~ID~~ll~-~~~~~~~~~~~v~el~nGCiCCs~~~dl~~ 81 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQNAAG-RRIAVIVNEFGDLGIDGEILK-ACGIEGCSEENIVELANGCICCTVADDFIP 81 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhccCC-CcEEEEECCCccccchHHHHh-ccccccCCcceEEEeCCCCccccCcHHHHH
Confidence 455789999999999999999975321 1111111111 1111111 1110 111111 1111
Q ss_pred --------ECCeeEEEEeCCCCCCChHHHHHHH-------HhccEEEEEEeCCCCCchh--------------------H
Q 010392 149 --------YNDTKINIIDTPGHSDFGGEVERIL-------NMVEGVLLVVDSVEGPMPQ--------------------T 193 (512)
Q Consensus 149 --------~~~~~i~liDtPG~~~~~~~~~~~~-------~~~d~~llvida~~g~~~~--------------------~ 193 (512)
-......+|.|.|..+-........ -..|+++.|+|+....... .
T Consensus 82 ~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (341)
T TIGR02475 82 TMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHE 161 (341)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccccc
Confidence 1123678999999988655444331 1357899999987532100 0
Q ss_pred HHHHHH-HHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh
Q 010392 194 RFVLKK-ALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (512)
Q Consensus 194 ~~~l~~-~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~ 235 (512)
...-.. ..+....-++++||+|+.+. +.++++++.+..+
T Consensus 162 ~~~~~~~~~Qi~~AD~IvlnK~Dl~~~---~~l~~~~~~l~~~ 201 (341)
T TIGR02475 162 TPLEELFEDQLACADLVILNKADLLDA---AGLARVRAEIAAE 201 (341)
T ss_pred chHHHHHHHHHHhCCEEEEeccccCCH---HHHHHHHHHHHHh
Confidence 000001 12222346899999999863 3445555555543
No 437
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0048 Score=60.83 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=26.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN 119 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~ 119 (512)
..+...|+++|..|+|||||++.|..++....+.
T Consensus 185 ~tdf~VIgvlG~QgsGKStllslLaans~~~dyr 218 (491)
T KOG4181|consen 185 TTDFTVIGVLGGQGSGKSTLLSLLAANSLDYDYR 218 (491)
T ss_pred CCCeeEEEeecCCCccHHHHHHHHhccChHHhhH
Confidence 4556678999999999999999998775544433
No 438
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.24 E-value=0.00047 Score=67.18 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=47.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
.+...+|.|+|-+|+|||||+|++............ ...+.|+|+......--.....+.++||||..
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~----------vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil 207 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAAR----------VGAEPGVTRRVSERIRISHRPPVYLIDTPGIL 207 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhcccee----------ccCCCCceeeehhheEeccCCceEEecCCCcC
Confidence 345678999999999999999998765443332211 12245888887764444445579999999963
No 439
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.12 E-value=0.0004 Score=71.77 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=40.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
..+|++||.+|+||||+||+|.+.........+ |.|-......+ .-.+.|.||||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TP---------------GkTKHFQTi~l---s~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTP---------------GKTKHFQTIFL---SPSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCC---------------CCcceeEEEEc---CCCceecCCCCcc
Confidence 689999999999999999999987654322211 55554443333 2368899999974
No 440
>PRK13796 GTPase YqeH; Provisional
Probab=97.12 E-value=0.0015 Score=67.28 Aligned_cols=98 Identities=21% Similarity=0.113 Sum_probs=57.7
Q ss_pred CChHHHHHHHHhcc-EEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc--hhhHhhhHHHHHHhcCCcc
Q 010392 164 DFGGEVERILNMVE-GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP--DYVINSTFELFIELNATDE 240 (512)
Q Consensus 164 ~~~~~~~~~~~~~d-~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 240 (512)
+|.. +...+...| .+++|+|+.+-.... ...+.... .+.|+++|+||+|+..... +...+-+.......+..
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~-~~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~-- 132 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSW-IPGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR-- 132 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCch-hHHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC--
Confidence 4444 444455555 899999988743222 22222222 2689999999999964321 11211222222222221
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
...++.+||++|+ |+.+|++.+.++.
T Consensus 133 --~~~v~~vSAk~g~----------gI~eL~~~I~~~~ 158 (365)
T PRK13796 133 --PVDVVLISAQKGH----------GIDELLEAIEKYR 158 (365)
T ss_pred --cCcEEEEECCCCC----------CHHHHHHHHHHhc
Confidence 1147899999999 8899988887654
No 441
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0052 Score=63.36 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=66.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCC--cCccceeeeeeccch---hh------hhcceeEEeeeeE-------EEEC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVF--RDNQTVKERIMDSND---LE------RERGITILSKNTS-------ITYN 150 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~--~~~~~~~~~~~d~~~---~e------~~~g~ti~~~~~~-------~~~~ 150 (512)
...|+++|++|+||||.+..|....... .....+.--..|... .+ ..-|+.+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4679999999999999999987542211 011111100111100 00 0012222111000 0124
Q ss_pred CeeEEEEeCCCCCCCh----HHHHHHHHhc--c-EEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 151 DTKINIIDTPGHSDFG----GEVERILNMV--E-GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~----~~~~~~~~~~--d-~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
++.+.||||+|..... .++...+..+ + -.+||+|++.+.. ...+.+......+ +-=++++|+|-.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~-~~~~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS-DVKEIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH-HHHHHHHHhcCCC-CCEEEEEeccCC
Confidence 6789999999975422 2344444433 3 4899999988632 2223333332222 446778999964
No 442
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0027 Score=65.53 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch---hh------hhcceeEEee------eeEEEECCeeE
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---LE------RERGITILSK------NTSITYNDTKI 154 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~ti~~~------~~~~~~~~~~i 154 (512)
..++++|++|+||||++..|....... ....+.-.-.|... .+ ...|+.+... ...+.-.+..+
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 458999999999999999998532110 00001000011100 00 0112211110 00001135688
Q ss_pred EEEeCCCCCCCh----HHHHHHHHhc-----cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 155 NIIDTPGHSDFG----GEVERILNMV-----EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 155 ~liDtPG~~~~~----~~~~~~~~~~-----d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
.||||||..... .++...+... .-.+||+|+..+.. .....+......+ .-=++++|+|-.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCC-CCEEEEEcccCC
Confidence 999999985322 2333333332 25789999887632 2233333332222 346678999964
No 443
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.00 E-value=0.0041 Score=65.67 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=62.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccc--------h-hhhhcceeEEeeee-------EEEECCee
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN--------D-LERERGITILSKNT-------SITYNDTK 153 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~--------~-~e~~~g~ti~~~~~-------~~~~~~~~ 153 (512)
..++++|+.|+||||++..|............+.--..|.. . .....|+.+..... .....+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 46899999999999999999864321110001110001110 0 01112222211100 12234567
Q ss_pred EEEEeCCCCCCChHHHHHH---HHhc---cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 154 INIIDTPGHSDFGGEVERI---LNMV---EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 154 i~liDtPG~~~~~~~~~~~---~~~~---d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
+.+|||+|........... +... .-.+||+|+..+. ....+.+......+ ..-+++||+|-.
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCC-CCEEEEeCCCCc
Confidence 8999999954333222222 2211 2268999987643 22223333333323 345678999954
No 444
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0015 Score=72.28 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=61.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch---hh------hhcceeEEeeee-------EEEECCee
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---LE------RERGITILSKNT-------SITYNDTK 153 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~ti~~~~~-------~~~~~~~~ 153 (512)
..|+++|+.|+||||++..|............+.-.-.|... .| ...|+.+..... .-...++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 468999999999999999998643111100011000001100 00 011221111000 00123568
Q ss_pred EEEEeCCCCCCChHHHHHHHHh------ccEEEEEEeCCCCCchhHHHHHHHHHHc-C-CcEEEEEeccCCC
Q 010392 154 INIIDTPGHSDFGGEVERILNM------VEGVLLVVDSVEGPMPQTRFVLKKALEF-G-HAVVVVVNKIDRP 217 (512)
Q Consensus 154 i~liDtPG~~~~~~~~~~~~~~------~d~~llvida~~g~~~~~~~~l~~~~~~-~-~p~ivviNK~Dl~ 217 (512)
+.||||||...........+.. .+-.+||+|+..+.. ...+.++..... + -+-=++++|+|-.
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 9999999954333222222222 245899999885321 122233333222 1 1345679999964
No 445
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0031 Score=64.10 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
....++++|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999754
No 446
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.90 E-value=0.0085 Score=48.20 Aligned_cols=77 Identities=21% Similarity=0.136 Sum_probs=51.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH-HH
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE-VE 170 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~-~~ 170 (512)
+++.|..|+||||+...|....... |..+ ..+. .+.++|+|+..+.... ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~--------------------g~~v----~~~~----d~iivD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR--------------------GKRV----LLID----DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--------------------CCeE----EEEC----CEEEEeCCCCccchhhhhh
Confidence 6788999999999999998653221 1100 0111 7899999987654321 14
Q ss_pred HHHHhccEEEEEEeCCCCCchhHHHH
Q 010392 171 RILNMVEGVLLVVDSVEGPMPQTRFV 196 (512)
Q Consensus 171 ~~~~~~d~~llvida~~g~~~~~~~~ 196 (512)
.....+|.++++++............
T Consensus 54 ~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 54 LALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred hhhhhCCEEEEecCCchhhHHHHHHH
Confidence 56678899999999776544444443
No 447
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.88 E-value=0.0039 Score=67.91 Aligned_cols=103 Identities=22% Similarity=0.245 Sum_probs=77.9
Q ss_pred hhhHHHHHHhCC---CCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecC
Q 010392 268 GPLFESIMRCIP---GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKF 344 (512)
Q Consensus 268 ~~Ll~~i~~~lp---~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~ 344 (512)
..|++.+.+++. .|......--.+.|.++|..+..|.++-++|..|+|++|..+.+.+.++.....+|.+| .+
T Consensus 469 Y~l~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl----~~ 544 (587)
T TIGR00487 469 YKLIDEIRAAMKGMLDPEYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSL----KR 544 (587)
T ss_pred HHHHHHHHHHHHhccCcceeeEeeeeEEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHh----hc
Confidence 456666655542 22222222234567788887778999999999999999999999998776555678887 45
Q ss_pred ceeecceecCCCEEEE--ccCCccccCCeEec
Q 010392 345 SRVSAEIVAAGDICAV--CGIDDIQIGETIAD 374 (512)
Q Consensus 345 ~~~~v~~a~aGdiv~i--~~l~~~~~Gdtl~~ 374 (512)
...+|+++..|+-|+| .+.++++.||+|-.
T Consensus 545 ~k~~v~ev~~g~ecgi~~~~~~~~~~gD~i~~ 576 (587)
T TIGR00487 545 FKDDVKEVSNGYECGIGIKNYNDIKEGDIIEA 576 (587)
T ss_pred cCccccEECCCCEEEEEEeccccCCCCCEEEE
Confidence 6678999999999999 56789999999964
No 448
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.88 E-value=0.01 Score=58.19 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch---------hhhhcceeEEeeee---------EE-E
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKNT---------SI-T 148 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~ti~~~~~---------~~-~ 148 (512)
+..+++++|.+|+|||||+..|....... ...+.-...|... ....-++.+..... .+ .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 34689999999999999999987653211 0111101111110 00011222111000 00 1
Q ss_pred ECCeeEEEEeCCCCCCCh----HHHHHHHHh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC
Q 010392 149 YNDTKINIIDTPGHSDFG----GEVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (512)
Q Consensus 149 ~~~~~i~liDtPG~~~~~----~~~~~~~~~--~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~ 218 (512)
..+..+.||||||..... .++...+.. .|-++||+|++... ....++++.....+ +-=++++|+|-..
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~-~~~~I~TKlDet~ 225 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDETA 225 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCC-CCEEEEEeecCCC
Confidence 125689999999986432 333333332 35689999987532 22223333333222 3466789999653
No 449
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.016 Score=51.47 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
..+|+|.|.+|+|||||+..+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 467999999999999999998754
No 450
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.84 E-value=0.022 Score=63.97 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=79.3
Q ss_pred chhhHHHHHHhC---CCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeec
Q 010392 267 LGPLFESIMRCI---PGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343 (512)
Q Consensus 267 i~~Ll~~i~~~l---p~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g 343 (512)
|..|++.+...+ -.|.....-.-.+.|..+|..+..|.++-++|..|+|+.|..+.+.+.++.....+|.+| .
T Consensus 670 IY~l~d~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~sl----k 745 (787)
T PRK05306 670 IYDLIDDVKAAMSGMLEPEYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESL----K 745 (787)
T ss_pred HHHHHHHHHHHHhhccCchhheeeeeeEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehh----c
Confidence 345565555443 223222222234567788888888999999999999999999999998876656688888 4
Q ss_pred CceeecceecCCCEEEE--ccCCccccCCeEec
Q 010392 344 FSRVSAEIVAAGDICAV--CGIDDIQIGETIAD 374 (512)
Q Consensus 344 ~~~~~v~~a~aGdiv~i--~~l~~~~~Gdtl~~ 374 (512)
+...+|.++..|.-|+| .+.++++.||+|-.
T Consensus 746 ~~k~~v~ev~~g~ecgi~~~~~~d~~~gD~ie~ 778 (787)
T PRK05306 746 RFKDDVKEVRAGYECGIGLENYNDIKEGDIIEA 778 (787)
T ss_pred ccCcCccEeCCCCEEEEEeeccccCCCCCEEEE
Confidence 66778999999999999 56889999999954
No 451
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.82 E-value=0.0048 Score=68.53 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=77.7
Q ss_pred hhhHHHHHHhCC---CCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecC
Q 010392 268 GPLFESIMRCIP---GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKF 344 (512)
Q Consensus 268 ~~Ll~~i~~~lp---~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~ 344 (512)
..|++.+...+. .|.......-.+.|..+|.... |.++-++|.+|+|+.|..+++.+.++.....+|.+| .+
T Consensus 626 Y~lid~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~sl----k~ 700 (742)
T CHL00189 626 YDLLEYIEALMEDLLDPEYKKVPIGEAEVKTVFPLAK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSL----KR 700 (742)
T ss_pred HHHHHHHHHHHhhccCceeeeeeceeEEeeEEEecCC-CEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhH----hh
Confidence 455555554432 2332223344566777777766 899999999999999999999998877656678887 45
Q ss_pred ceeecceecCCCEEEE--ccCCccccCCeEec
Q 010392 345 SRVSAEIVAAGDICAV--CGIDDIQIGETIAD 374 (512)
Q Consensus 345 ~~~~v~~a~aGdiv~i--~~l~~~~~Gdtl~~ 374 (512)
...+|.++..|.-|+| .+.++++.||+|-.
T Consensus 701 ~k~~v~ev~~g~ecgi~i~~~~d~~~gD~ie~ 732 (742)
T CHL00189 701 VKEDVEEAQEGNECGIFIEEFQLWQSGDKIHA 732 (742)
T ss_pred cCccccEeCCCCEEEEEeeCCCCCCcCCEEEE
Confidence 6678999999999999 56889999999954
No 452
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.80 E-value=0.012 Score=60.11 Aligned_cols=127 Identities=19% Similarity=0.305 Sum_probs=65.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchh---hh------hcceeEEeeeeE-------EEECCe
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL---ER------ERGITILSKNTS-------ITYNDT 152 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~---e~------~~g~ti~~~~~~-------~~~~~~ 152 (512)
.+.|+++|++|+||||-+-.|............+.-.-+|.... |+ -=|+.+...... -.+.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 78899999999999999999876544111111111000111100 00 002222111110 012346
Q ss_pred eEEEEeCCCCCCCh----HHHHHHHHhc--cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 153 KINIIDTPGHSDFG----GEVERILNMV--EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 153 ~i~liDtPG~~~~~----~~~~~~~~~~--d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
++.|+||.|..-+. .++..++..+ .-..||++++... ...++.+......++. -++++|+|-.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~-~dlkei~~~f~~~~i~-~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY-EDLKEIIKQFSLFPID-GLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch-HHHHHHHHHhccCCcc-eeEEEccccc
Confidence 89999999976543 3344444443 2367788876521 2223333333333333 4568999954
No 453
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.74 E-value=0.0042 Score=64.53 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=26.8
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
.+..+++|+|+|+.|+|||||+++|....+.
T Consensus 215 r~~~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 215 RPFFVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred hhCCCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999999987543
No 454
>PRK13695 putative NTPase; Provisional
Probab=96.73 E-value=0.0057 Score=55.95 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=27.3
Q ss_pred EEEEe---CCCCCchhHHHHHHHHHHcCCcEEEEEeccC
Q 010392 180 LLVVD---SVEGPMPQTRFVLKKALEFGHAVVVVVNKID 215 (512)
Q Consensus 180 llvid---a~~g~~~~~~~~l~~~~~~~~p~ivviNK~D 215 (512)
++++| ..+....+..+.+..+.+.+.|+++++||..
T Consensus 99 ~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 99 VIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred EEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 47899 4455556667777777788999999999853
No 455
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.73 E-value=0.007 Score=55.01 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=51.0
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcE-EEEEeccCCC
Q 010392 150 NDTKINIIDTPGHSDFGGEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDRP 217 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~-ivviNK~Dl~ 217 (512)
.++.+.|+|||+... ......+ ..+|.+++|+.............++.+.+.+.++ -+|+|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 467899999998743 2333333 5789999999888777778888899999988875 5789999853
No 456
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.68 E-value=0.005 Score=64.05 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=59.0
Q ss_pred cceeEEeeeeEEEE-CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCC--------CC---chhHHHHHHHHHHc
Q 010392 136 RGITILSKNTSITY-NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE--------GP---MPQTRFVLKKALEF 203 (512)
Q Consensus 136 ~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~--------g~---~~~~~~~l~~~~~~ 203 (512)
|..|.......+.+ ++..+.++|+.|+..-+..|..++..++++|+|++.++ .. ......+++.+...
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 34566666777888 99999999999999888999999999999999999543 11 12233444444332
Q ss_pred ----CCcEEEEEeccCCC
Q 010392 204 ----GHAVVVVVNKIDRP 217 (512)
Q Consensus 204 ----~~p~ivviNK~Dl~ 217 (512)
+.|+|+++||.|+.
T Consensus 299 ~~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLF 316 (389)
T ss_dssp GGGTTSEEEEEEE-HHHH
T ss_pred cccccCceEEeeecHHHH
Confidence 57999999999974
No 457
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.68 E-value=0.015 Score=57.29 Aligned_cols=100 Identities=19% Similarity=0.296 Sum_probs=61.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
..+.++++|+|++|.|||++++++.......... . + ....+..+.+|.-.+-
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~-~---------------~------------~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE-D---------------A------------ERIPVVYVQMPPEPDE 109 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC-C---------------C------------ccccEEEEecCCCCCh
Confidence 4567899999999999999999998754321110 0 0 0125666777654331
Q ss_pred ------------------------hHHHHHHHHhccEEEEEEeCCC----CCchhHHHHHHHHHH----cCCcEEEEEec
Q 010392 166 ------------------------GGEVERILNMVEGVLLVVDSVE----GPMPQTRFVLKKALE----FGHAVVVVVNK 213 (512)
Q Consensus 166 ------------------------~~~~~~~~~~~d~~llvida~~----g~~~~~~~~l~~~~~----~~~p~ivviNK 213 (512)
.......++.+..=++|||=.+ |...+-++++..++. .++|++.|+++
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1223455666777888888433 333444555555443 35788887754
No 458
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.66 E-value=0.0016 Score=65.38 Aligned_cols=59 Identities=22% Similarity=0.418 Sum_probs=42.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
....+|+|+|-+|+||||+||+|...........+ |+|.......+ +..|.|+|.||..
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p---------------GvT~smqeV~L---dk~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP---------------GVTRSMQEVKL---DKKIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCc---------------cchhhhhheec---cCCceeccCCcee
Confidence 45678999999999999999999987654322211 55554443332 4579999999974
No 459
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.64 E-value=0.022 Score=55.05 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=41.8
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHH-HHHHHc--CCcEEEEEeccCCC
Q 010392 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVL-KKALEF--GHAVVVVVNKIDRP 217 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l-~~~~~~--~~p~ivviNK~Dl~ 217 (512)
..+.|+|||+. +......++..+|.+++++.............+ ..+... ..++.+|+|+.|..
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 37999999995 345567788999999999987642222222122 222212 34577899999864
No 460
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.52 E-value=0.0037 Score=58.53 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=41.2
Q ss_pred eeEEEEeCCCCCCC------hHHHHHHHHhccE---EEEEEeCC---CC--CchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 152 TKINIIDTPGHSDF------GGEVERILNMVEG---VLLVVDSV---EG--PMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 152 ~~i~liDtPG~~~~------~~~~~~~~~~~d~---~llvida~---~g--~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
..+.++|+||+.++ ...+.+.+..-|. ++-++|+. +. ......-.+.-+.....|-+=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 47899999998653 2344555666665 45555632 21 11122233444556678999999999986
Q ss_pred C
Q 010392 218 S 218 (512)
Q Consensus 218 ~ 218 (512)
.
T Consensus 177 ~ 177 (290)
T KOG1533|consen 177 K 177 (290)
T ss_pred H
Confidence 3
No 461
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.45 E-value=0.018 Score=55.34 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=45.4
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHH------HcCCcEEEEEeccC
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKAL------EFGHAVVVVVNKID 215 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~------~~~~p~ivviNK~D 215 (512)
+++.+.||||||... .....++..+|.+|+.+..+.-....+...+..+. ..+++..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 457899999999764 45667889999999988876544434444433332 22578889999987
No 462
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=96.43 E-value=0.006 Score=57.94 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=64.4
Q ss_pred hhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCC--------CCchhHHHHHHHHHH---
Q 010392 134 RERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE--------GPMPQTRFVLKKALE--- 202 (512)
Q Consensus 134 ~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~--------g~~~~~~~~l~~~~~--- 202 (512)
+-|-+|.......+..+..++.++|..|+.|-...|...++...++|+|+.++. ..+...++.+...+.
T Consensus 184 rcRvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWn 263 (379)
T KOG0099|consen 184 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWN 263 (379)
T ss_pred HhhhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHh
Confidence 346667777777888888899999999999999999999999999999999765 222333343333332
Q ss_pred ----cCCcEEEEEeccCCCC
Q 010392 203 ----FGHAVVVVVNKIDRPS 218 (512)
Q Consensus 203 ----~~~p~ivviNK~Dl~~ 218 (512)
..+.+|+++||.|+..
T Consensus 264 NRwL~tisvIlFLNKqDlla 283 (379)
T KOG0099|consen 264 NRWLRTISVILFLNKQDLLA 283 (379)
T ss_pred hhHHhhhheeEEecHHHHHH
Confidence 1467999999999864
No 463
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.40 E-value=0.01 Score=54.01 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
..+-++|+|.+|+|||||+++|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3456899999999999999999865
No 464
>PRK01889 GTPase RsgA; Reviewed
Probab=96.40 E-value=0.0035 Score=64.22 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..++++|.+|+|||||+|.|++...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4799999999999999999997644
No 465
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.37 E-value=0.007 Score=55.31 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=33.4
Q ss_pred cEEEEEEeCCCCCchhHHHHHHH--HHHcCCcEEEEEeccCCCC
Q 010392 177 EGVLLVVDSVEGPMPQTRFVLKK--ALEFGHAVVVVVNKIDRPS 218 (512)
Q Consensus 177 d~~llvida~~g~~~~~~~~l~~--~~~~~~p~ivviNK~Dl~~ 218 (512)
|++++|+|+..........+.+. +...+.|+|+|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999988766666666665 4445789999999999964
No 466
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.021 Score=57.43 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc------ceeeeeeccchh-hhhcceeEEeeeeE-------------E
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ------TVKERIMDSNDL-ERERGITILSKNTS-------------I 147 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~------~~~~~~~d~~~~-e~~~g~ti~~~~~~-------------~ 147 (512)
+.--|.++|-.|+||||.+-.|.+......+.. +.+.-..|..+. ..+.++.+..++.. +
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 344589999999999999999875432211111 111112222222 12233433332221 1
Q ss_pred EECCeeEEEEeCCCCCCCh----HHHHHHHHh--ccEEEEEEeCCCCCchhHHHHHHHHHHcC--C-cEEEEEeccCCC
Q 010392 148 TYNDTKINIIDTPGHSDFG----GEVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFG--H-AVVVVVNKIDRP 217 (512)
Q Consensus 148 ~~~~~~i~liDtPG~~~~~----~~~~~~~~~--~d~~llvida~~g~~~~~~~~l~~~~~~~--~-p~ivviNK~Dl~ 217 (512)
.-.+..+.|+||.|...-. .++....+. -|-+|+|+|++-|-.. ..+++.++ + ---++++|+|-.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa-----e~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA-----EAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH-----HHHHHHHHHhhccceEEEEecccC
Confidence 2235689999999954322 222222221 4889999999876321 11222222 1 235678999964
No 467
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.33 E-value=0.017 Score=56.76 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=56.5
Q ss_pred ccEEEEEEeCCCCCc--hhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeecccc
Q 010392 176 VEGVLLVVDSVEGPM--PQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQ 253 (512)
Q Consensus 176 ~d~~llvida~~g~~--~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~ 253 (512)
.|-+++|+.+.++.. ......+-.+...++..++++||+|+.+...... ++....+..+ .++++.+|+++
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~-------gy~v~~~s~~~ 151 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV-KELLREYEDI-------GYPVLFVSAKN 151 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH-HHHHHHHHhC-------CeeEEEecCcC
Confidence 566788888776533 3445677777888998888999999986542222 3344444333 45799999999
Q ss_pred CccCCCCCCcCCCchhhHHHHH
Q 010392 254 GKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 254 g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
+. ++.+|.+.+.
T Consensus 152 ~~----------~~~~l~~~l~ 163 (301)
T COG1162 152 GD----------GLEELAELLA 163 (301)
T ss_pred cc----------cHHHHHHHhc
Confidence 98 7777766653
No 468
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.02 Score=59.98 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=68.7
Q ss_pred eeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCCccc
Q 010392 290 QMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGIDDIQ 367 (512)
Q Consensus 290 ~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~~~~ 367 (512)
.+.+-+++..+..|.++-++|..|+++.|..+.....+......+|.+| .++.+++.++.+|.-|+| .+.++++
T Consensus 415 ~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sL----k~~kddv~ev~~G~ecgI~i~~~~di~ 490 (509)
T COG0532 415 LAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESL----KRFKDDVKEVRKGQECGIAIENYRDIK 490 (509)
T ss_pred ceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEee----eccCccHhHhccCcEEEEEecCcccCC
Confidence 4556678888889999999999999999999999987765555677787 567789999999999998 5678999
Q ss_pred cCCeEec
Q 010392 368 IGETIAD 374 (512)
Q Consensus 368 ~Gdtl~~ 374 (512)
.||+|-.
T Consensus 491 ~gD~le~ 497 (509)
T COG0532 491 EGDILEV 497 (509)
T ss_pred CCCEEEE
Confidence 9999964
No 469
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.20 E-value=0.024 Score=56.38 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=24.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
.+-++++++|+.++|||||...|+.....
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~nyavk 129 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLNYAVK 129 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHHHHHH
Confidence 34678999999999999999999876543
No 470
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.17 E-value=0.013 Score=42.59 Aligned_cols=41 Identities=29% Similarity=0.540 Sum_probs=23.4
Q ss_pred hccEEEEEEeCCC--CCc-hhHHHHHHHHHHc--CCcEEEEEeccC
Q 010392 175 MVEGVLLVVDSVE--GPM-PQTRFVLKKALEF--GHAVVVVVNKID 215 (512)
Q Consensus 175 ~~d~~llvida~~--g~~-~~~~~~l~~~~~~--~~p~ivviNK~D 215 (512)
..+.+++++|.++ |.. .+...+++.++.. ++|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3588999999776 332 2223445555554 799999999998
No 471
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.11 E-value=0.032 Score=57.23 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=63.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccc-eeeee-----ecc-chhhhhcceeEEee-------------eeE
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT-VKERI-----MDS-NDLERERGITILSK-------------NTS 146 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~-~~~~~-----~d~-~~~e~~~g~ti~~~-------------~~~ 146 (512)
+.+-.|.++|-.|+||||.+..|............ +.... .|. .....+-++.+... ...
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998754322111111 00000 000 00001112211111 001
Q ss_pred EEECCeeEEEEeCCCCCCChHHHHHHHH------hccEEEEEEeCCCCCchhHHHHHHHHHHc--CCc-EEEEEeccCCC
Q 010392 147 ITYNDTKINIIDTPGHSDFGGEVERILN------MVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHA-VVVVVNKIDRP 217 (512)
Q Consensus 147 ~~~~~~~i~liDtPG~~~~~~~~~~~~~------~~d~~llvida~~g~~~~~~~~l~~~~~~--~~p-~ivviNK~Dl~ 217 (512)
+....+.+.|+||.|--.....+..-+. ..|=+|||+|+.-|-. ....++.+ .++ .=|+++|+|-.
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd-----A~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD-----AVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH-----HHHHHHHHhhhcCCceEEEEcccCC
Confidence 1122458999999996544333322222 2477999999887621 11222222 234 35678999954
No 472
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.0054 Score=70.70 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=60.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE-ECCeeEEEEeCCCCCC---
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-YNDTKINIIDTPGHSD--- 164 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~~~~i~liDtPG~~~--- 164 (512)
.+=-+|||++|+||||++...-. .+...... ...+..... ..+++ |=+..-.+|||.|-.-
T Consensus 125 LPWy~viG~pgsGKTtal~~sgl-~Fpl~~~~-------------~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~ 189 (1188)
T COG3523 125 LPWYMVIGPPGSGKTTALLNSGL-QFPLAEQM-------------GALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQD 189 (1188)
T ss_pred CCceEEecCCCCCcchHHhcccc-cCcchhhh-------------ccccccCCC-CcccCcccccceEEEcCCcceeccc
Confidence 34468999999999999865422 12111100 000111000 11222 2345678999999321
Q ss_pred -----ChHHHHHH---------HHhccEEEEEEeCCCCC--chhHH-HH-------HHHHH---HcCCcEEEEEeccCCC
Q 010392 165 -----FGGEVERI---------LNMVEGVLLVVDSVEGP--MPQTR-FV-------LKKAL---EFGHAVVVVVNKIDRP 217 (512)
Q Consensus 165 -----~~~~~~~~---------~~~~d~~llvida~~g~--~~~~~-~~-------l~~~~---~~~~p~ivviNK~Dl~ 217 (512)
-..+|... .+-.+|+|+.+|..+-. ..+.+ .+ +..+. +...|+.+++||+|+.
T Consensus 190 s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 190 SADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred CcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 12233332 23369999999965411 11111 11 22222 2367999999999986
Q ss_pred C
Q 010392 218 S 218 (512)
Q Consensus 218 ~ 218 (512)
.
T Consensus 270 ~ 270 (1188)
T COG3523 270 P 270 (1188)
T ss_pred c
Confidence 4
No 473
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.10 E-value=0.028 Score=55.85 Aligned_cols=125 Identities=21% Similarity=0.342 Sum_probs=64.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc------ceeeeeeccchh-hhhcceeEEeeee-----EE-------
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ------TVKERIMDSNDL-ERERGITILSKNT-----SI------- 147 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~------~~~~~~~d~~~~-e~~~g~ti~~~~~-----~~------- 147 (512)
+.+..|+++|-.|+||||-+..|.+......... +.+.--.+.... ...-|+.+-.... .+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 3466789999999999999999976533211111 110000000000 0011232222110 00
Q ss_pred -EECCeeEEEEeCCCCC----CChHHHHHHHHhc---cE-----EEEEEeCCCCCchhHHHHHHHHHHcC--Cc-EEEEE
Q 010392 148 -TYNDTKINIIDTPGHS----DFGGEVERILNMV---EG-----VLLVVDSVEGPMPQTRFVLKKALEFG--HA-VVVVV 211 (512)
Q Consensus 148 -~~~~~~i~liDtPG~~----~~~~~~~~~~~~~---d~-----~llvida~~g~~~~~~~~l~~~~~~~--~p-~ivvi 211 (512)
.-.+..+.|+||.|-- +...++....+.+ +. +++++||..|-. .+.+++.++ ++ -=+++
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav~l~GiIl 291 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAVGLDGIIL 291 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhcCCceEEE
Confidence 1124589999999953 3445555444443 33 888889987632 122233322 22 35678
Q ss_pred eccCC
Q 010392 212 NKIDR 216 (512)
Q Consensus 212 NK~Dl 216 (512)
+|+|-
T Consensus 292 TKlDg 296 (340)
T COG0552 292 TKLDG 296 (340)
T ss_pred Eeccc
Confidence 99994
No 474
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.01 E-value=0.011 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
+|.|.|.+|+|||||+..++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 475
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.99 E-value=0.011 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcC
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
|+++|++|||||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999986544
No 476
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.94 E-value=0.046 Score=51.66 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=40.3
Q ss_pred CCeeEEEEeCCCCCCChHHHHHH--HHhccEEEEEEeCCCCCchhHHHHHHHHHHc----CCc-EEEEEeccCCC
Q 010392 150 NDTKINIIDTPGHSDFGGEVERI--LNMVEGVLLVVDSVEGPMPQTRFVLKKALEF----GHA-VVVVVNKIDRP 217 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~--~~~~d~~llvida~~g~~~~~~~~l~~~~~~----~~p-~ivviNK~Dl~ 217 (512)
..+.+.||||+|........ .. ...+|.++++++...-........++.+++. +.+ ..+++||.|..
T Consensus 115 ~~yD~ilID~~g~~~~~~~~-~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFA-MPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceecccc-cccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 45789999998865321111 11 2479999999987653332333444444443 333 45899999953
No 477
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.88 E-value=0.031 Score=54.28 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
|+++|.+||||||+...|...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 478
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.85 E-value=0.005 Score=61.73 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=25.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
.+...-|++||.+|+||||+||.|-.....
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccc
Confidence 445677999999999999999999876554
No 479
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.75 E-value=0.011 Score=44.00 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..+|.|+.|+|||||++++..-.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999997643
No 480
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.47 E-value=0.086 Score=45.10 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
|++.|++|+|||+++..+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6799999999999999998764
No 481
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.42 E-value=0.054 Score=48.76 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
+.|+|+|..|+|||||+++|...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 482
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.38 E-value=0.015 Score=49.31 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.|+|.|.+||||||+++.|....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998764
No 483
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.011 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcC
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
|+++|++|||||||++.+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 89999999999999999976533
No 484
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.24 E-value=0.14 Score=50.41 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=45.1
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC------------CchhhHhhhHHHHHHhcCCccccccce
Q 010392 179 VLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA------------RPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 179 ~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
-|+++|...-+...-.+++..++..+.+..+|--++++..+ -.+++++++...|..-.. ....+-|.
T Consensus 72 ~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~-~nrWD~pl 150 (270)
T PF08433_consen 72 TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDP-KNRWDSPL 150 (270)
T ss_dssp SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTS-S-GGGS-S
T ss_pred eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCC-CCCccCCe
Confidence 56789999888888889999999999998888777775321 124455555555543322 12345566
Q ss_pred eeecc-ccCccCCCCCCcCCCchhhHHHHHH
Q 010392 247 IYASG-IQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 247 i~~Sa-~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
|.+.. -... .++++++.|..
T Consensus 151 f~i~~~~~~~----------~~~~I~~~l~~ 171 (270)
T PF08433_consen 151 FTIDSSDEEL----------PLEEIWNALFE 171 (270)
T ss_dssp EEEE-TTS-------------HHHHHHHHHH
T ss_pred EEEecCCCCC----------CHHHHHHHHHh
Confidence 65542 2222 45667777653
No 485
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.22 E-value=0.15 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcC
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
++|.|++|+|||||+..++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999987643
No 486
>PRK08118 topology modulation protein; Reviewed
Probab=95.18 E-value=0.02 Score=52.09 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
.+|+|+|++|||||||...|....+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999876543
No 487
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.09 E-value=0.079 Score=51.90 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=24.9
Q ss_pred CeeEEEEeCCCCCCChHH-HHHHHHhccEEEEEEeCCCC
Q 010392 151 DTKINIIDTPGHSDFGGE-VERILNMVEGVLLVVDSVEG 188 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~-~~~~~~~~d~~llvida~~g 188 (512)
++.+.||||||....... ...++..+|.+|+++.+..-
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~ 154 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMM 154 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCchH
Confidence 568999999986532111 11123369999999987653
No 488
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.07 E-value=0.12 Score=51.55 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=39.6
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc----CCc-EEEEEeccC
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF----GHA-VVVVVNKID 215 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~----~~p-~ivviNK~D 215 (512)
++.+.||||||.... ..+...+..||.+|+++++..-........++.++.. +++ .-+++|+.|
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 568999999986332 1223456789999999987653333333333333322 333 347889987
No 489
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.00 E-value=0.085 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.-++|+|..|+|||||+++|+...
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHH
Confidence 348999999999999999997653
No 490
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.97 E-value=0.017 Score=54.69 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-|+|+|++|||||||+|.+-.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999998654
No 491
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.95 E-value=0.068 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
+-|+|+|..|+|||||+..|+...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998653
No 492
>PRK07261 topology modulation protein; Provisional
Probab=94.90 E-value=0.025 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
+|+|+|.+|+|||||+..|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 69999999999999999997653
No 493
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.88 E-value=0.028 Score=56.64 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=30.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee-eeeeccchhhhhcce
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK-ERIMDSNDLERERGI 138 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~-~~~~d~~~~e~~~g~ 138 (512)
-++++|++|||||||++.+.+-.......-.+. ..+.|..+.+|.-++
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 389999999999999999987544322111111 444555555544443
No 494
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.023 Score=52.15 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=53.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC---ChH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD---FGG 167 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~---~~~ 167 (512)
+|+|+|++||||||+...|....+... ..+. |....+...+... ....-.++|-.+... ...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h-lstg-----d~~r~~~~~~t~l---------g~~~k~~i~~g~lv~d~i~~~ 66 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH-LDTG-----DILRAAIAERTEL---------GEEIKKYIDKGELVPDEIVNG 66 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE-EcHh-----HHhHhhhccCChH---------HHHHHHHHHcCCccchHHHHH
Confidence 699999999999999999998733221 1110 0000000000000 000001344444221 223
Q ss_pred HHHHHHHhccEE-EEEEeCCCCCchhHHHHHHHHHHcCCcE
Q 010392 168 EVERILNMVEGV-LLVVDSVEGPMPQTRFVLKKALEFGHAV 207 (512)
Q Consensus 168 ~~~~~~~~~d~~-llvida~~g~~~~~~~~l~~~~~~~~p~ 207 (512)
.+...+..+|+. .+++|.......|.+.+-+.+.+++.+.
T Consensus 67 ~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~ 107 (178)
T COG0563 67 LVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRL 107 (178)
T ss_pred HHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCc
Confidence 344455556633 5778877766667766666666666543
No 495
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.84 E-value=0.027 Score=42.91 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 496
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.83 E-value=0.064 Score=50.96 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
....|.+.|++|+|||+|+.++....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998653
No 497
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=94.83 E-value=0.075 Score=49.76 Aligned_cols=73 Identities=14% Similarity=0.287 Sum_probs=46.5
Q ss_pred EEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCC-----------CCCchhHHHHHHHHHHc----CCcEEEE
Q 010392 146 SITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSV-----------EGPMPQTRFVLKKALEF----GHAVVVV 210 (512)
Q Consensus 146 ~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~-----------~g~~~~~~~~l~~~~~~----~~p~ivv 210 (512)
.+...+..+.++|..|+..-...|...+...-.+++++.-+ +......+.++..+..+ +-++|++
T Consensus 193 pfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlF 272 (359)
T KOG0085|consen 193 PFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 272 (359)
T ss_pred CcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEE
Confidence 34444556789999999877777776665554444444322 12333444555555544 5689999
Q ss_pred EeccCCCC
Q 010392 211 VNKIDRPS 218 (512)
Q Consensus 211 iNK~Dl~~ 218 (512)
+||-|+.+
T Consensus 273 LNKkDlLE 280 (359)
T KOG0085|consen 273 LNKKDLLE 280 (359)
T ss_pred echhhhhh
Confidence 99999874
No 498
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.80 E-value=0.029 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
+...-|+|+|++|||||||+++|.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345669999999999999999998653
No 499
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.77 E-value=0.029 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.|+|+|+.|+|||||+..|+...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998763
No 500
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.71 E-value=0.023 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.++|+|+.|+|||||++.|.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 35899999999999999999765
Done!