Query 010392
Match_columns 512
No_of_seqs 512 out of 3567
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 05:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vqt_A RF-3, peptide chain rel 100.0 1.3E-74 4.4E-79 619.0 32.4 394 87-505 29-527 (548)
2 4fn5_A EF-G 1, elongation fact 100.0 1.1E-72 3.7E-77 623.8 31.3 397 86-504 10-529 (709)
3 2rdo_7 EF-G, elongation factor 100.0 2.2E-69 7.6E-74 594.8 45.3 396 86-503 7-525 (704)
4 3j25_A Tetracycline resistance 100.0 3.4E-73 1.2E-77 619.9 9.2 394 88-505 1-453 (638)
5 2xex_A Elongation factor G; GT 100.0 2.5E-69 8.5E-74 594.0 39.9 399 85-505 6-518 (693)
6 1dar_A EF-G, elongation factor 100.0 2.3E-69 7.9E-74 594.1 32.1 398 86-505 9-519 (691)
7 2dy1_A Elongation factor G; tr 100.0 3.7E-65 1.3E-69 559.0 38.3 393 86-504 6-491 (665)
8 3tr5_A RF-3, peptide chain rel 100.0 8.5E-64 2.9E-68 532.6 32.4 370 87-480 11-475 (528)
9 2h5e_A Peptide chain release f 100.0 3.8E-63 1.3E-67 528.1 34.2 371 87-481 11-477 (529)
10 1n0u_A EF-2, elongation factor 100.0 5.7E-63 2E-67 553.6 36.5 414 82-505 12-595 (842)
11 2ywe_A GTP-binding protein LEP 100.0 8.4E-62 2.9E-66 521.1 35.4 362 86-480 3-380 (600)
12 3cb4_D GTP-binding protein LEP 100.0 1.9E-60 6.6E-65 511.7 36.7 360 87-479 2-377 (599)
13 3j2k_7 ERF3, eukaryotic polype 100.0 3.6E-39 1.2E-43 337.4 27.7 282 86-377 14-328 (439)
14 1d2e_A Elongation factor TU (E 100.0 1.9E-39 6.5E-44 335.8 21.2 281 88-376 2-290 (397)
15 2c78_A Elongation factor TU-A; 100.0 3E-39 1E-43 335.4 22.6 285 86-376 8-308 (405)
16 1jny_A EF-1-alpha, elongation 100.0 1.4E-38 4.7E-43 333.1 21.9 280 87-377 4-318 (435)
17 3p26_A Elongation factor 1 alp 100.0 1.2E-37 4.1E-42 330.2 24.6 287 86-377 30-363 (483)
18 1r5b_A Eukaryotic peptide chai 100.0 6.7E-38 2.3E-42 330.3 21.6 280 87-377 41-357 (467)
19 3mca_A HBS1, elongation factor 100.0 2.1E-38 7.2E-43 342.2 16.9 281 86-377 174-490 (592)
20 1f60_A Elongation factor EEF1A 100.0 3.7E-37 1.3E-41 323.8 23.7 280 88-377 6-329 (458)
21 1zun_B Sulfate adenylate trans 100.0 1.1E-36 3.8E-41 318.6 25.9 282 87-377 22-327 (434)
22 3avx_A Elongation factor TS, e 100.0 3.2E-37 1.1E-41 343.9 22.1 283 86-377 293-582 (1289)
23 3izq_1 HBS1P, elongation facto 100.0 5.6E-37 1.9E-41 332.0 21.6 287 86-377 164-497 (611)
24 2elf_A Protein translation elo 100.0 3.8E-36 1.3E-40 307.1 20.5 238 90-374 22-275 (370)
25 1kk1_A EIF2gamma; initiation o 100.0 1.9E-35 6.6E-40 307.2 25.5 261 86-377 7-317 (410)
26 1s0u_A EIF-2-gamma, translatio 100.0 7.2E-35 2.5E-39 302.6 22.9 261 86-377 5-315 (408)
27 1wb1_A Translation elongation 100.0 7.1E-36 2.4E-40 315.6 14.9 259 88-376 18-285 (482)
28 3sjy_A Translation initiation 100.0 3.1E-34 1.1E-38 297.4 25.4 273 86-377 5-309 (403)
29 1g7s_A Translation initiation 100.0 5E-35 1.7E-39 314.8 17.6 299 88-422 4-373 (594)
30 3izy_P Translation initiation 100.0 3.1E-34 1.1E-38 303.8 7.0 254 88-377 3-260 (537)
31 1zo1_I IF2, translation initia 100.0 1.4E-33 4.8E-38 296.5 11.8 253 88-376 3-258 (501)
32 3e3x_A BIPA; MCSG,PSI2, struct 99.9 2E-25 7E-30 219.1 11.3 118 359-477 2-119 (332)
33 3qq5_A Small GTP-binding prote 99.9 2.5E-24 8.6E-29 222.5 -4.7 248 86-377 31-326 (423)
34 2efe_B Small GTP-binding prote 99.9 5.9E-21 2E-25 174.3 15.7 163 87-281 10-176 (181)
35 2lkc_A Translation initiation 99.9 1.5E-21 5.3E-26 177.6 11.0 162 87-278 6-169 (178)
36 4dhe_A Probable GTP-binding pr 99.9 3.7E-21 1.3E-25 182.2 13.8 175 86-284 26-215 (223)
37 4dkx_A RAS-related protein RAB 99.9 6.2E-21 2.1E-25 180.3 15.2 162 88-281 12-177 (216)
38 2fg5_A RAB-22B, RAS-related pr 99.8 7.8E-21 2.7E-25 175.9 14.8 163 87-281 21-187 (192)
39 2dyk_A GTP-binding protein; GT 99.8 1.3E-20 4.5E-25 168.4 15.7 153 89-279 1-161 (161)
40 1r2q_A RAS-related protein RAB 99.8 1E-20 3.5E-25 170.4 14.8 160 88-279 5-168 (170)
41 1z0f_A RAB14, member RAS oncog 99.8 1.6E-20 5.3E-25 170.8 15.2 161 86-278 12-176 (179)
42 1ek0_A Protein (GTP-binding pr 99.8 2.4E-20 8.2E-25 167.9 15.3 160 89-279 3-168 (170)
43 3tkl_A RAS-related protein RAB 99.8 2E-20 6.8E-25 173.1 14.9 159 86-278 13-177 (196)
44 2oil_A CATX-8, RAS-related pro 99.8 1.8E-20 6.2E-25 173.3 14.5 161 86-278 22-186 (193)
45 1z0j_A RAB-22, RAS-related pro 99.8 2.5E-20 8.7E-25 167.9 15.0 160 88-279 5-168 (170)
46 1wf3_A GTP-binding protein; GT 99.8 2E-20 6.8E-25 185.7 15.5 158 88-280 6-173 (301)
47 3iev_A GTP-binding protein ERA 99.8 3.3E-20 1.1E-24 185.0 17.1 165 86-281 7-183 (308)
48 2gf9_A RAS-related protein RAB 99.8 1.3E-20 4.4E-25 173.8 13.0 160 87-278 20-183 (189)
49 2y8e_A RAB-protein 6, GH09086P 99.8 2.8E-20 9.7E-25 169.1 15.0 160 87-280 12-177 (179)
50 2p5s_A RAS and EF-hand domain 99.8 2.7E-20 9.2E-25 173.3 14.3 163 86-279 25-196 (199)
51 4bas_A ADP-ribosylation factor 99.8 2.9E-20 9.9E-25 172.4 14.2 162 86-279 14-188 (199)
52 1zbd_A Rabphilin-3A; G protein 99.8 3.7E-20 1.3E-24 172.6 15.0 160 87-278 6-169 (203)
53 3dz8_A RAS-related protein RAB 99.8 1E-20 3.5E-25 174.9 10.8 161 86-278 20-184 (191)
54 1zj6_A ADP-ribosylation factor 99.8 6.1E-20 2.1E-24 169.0 15.8 162 87-282 14-180 (187)
55 1z2a_A RAS-related protein RAB 99.8 2.9E-20 9.9E-25 167.2 13.2 157 88-278 4-165 (168)
56 2erx_A GTP-binding protein DI- 99.8 1.2E-19 4.2E-24 163.6 17.0 160 89-281 3-168 (172)
57 3kkq_A RAS-related protein M-R 99.8 6.6E-20 2.3E-24 167.8 15.2 158 86-278 15-180 (183)
58 1zd9_A ADP-ribosylation factor 99.8 1.1E-19 3.7E-24 167.6 16.6 160 88-280 21-185 (188)
59 3clv_A RAB5 protein, putative; 99.8 8E-20 2.7E-24 169.6 15.8 174 86-278 4-202 (208)
60 1svi_A GTP-binding protein YSX 99.8 5.8E-20 2E-24 170.0 14.8 161 86-279 20-194 (195)
61 1c1y_A RAS-related protein RAP 99.8 8.6E-20 2.9E-24 163.9 15.4 158 89-278 3-165 (167)
62 2fn4_A P23, RAS-related protei 99.8 7.2E-20 2.5E-24 166.7 15.0 159 86-279 6-171 (181)
63 1r8s_A ADP-ribosylation factor 99.8 1.3E-19 4.4E-24 162.6 16.4 156 90-279 1-161 (164)
64 3tw8_B RAS-related protein RAB 99.8 1.4E-20 4.8E-25 171.4 10.2 160 86-279 6-170 (181)
65 1g16_A RAS-related protein SEC 99.8 3.5E-20 1.2E-24 167.0 12.6 157 88-279 2-164 (170)
66 1u8z_A RAS-related protein RAL 99.8 1.2E-19 4E-24 162.9 16.0 155 89-278 4-165 (168)
67 1z08_A RAS-related protein RAB 99.8 2.8E-20 9.6E-25 167.8 11.9 158 87-278 4-167 (170)
68 2a5j_A RAS-related protein RAB 99.8 3.6E-20 1.2E-24 171.2 12.4 158 87-278 19-182 (191)
69 3oes_A GTPase rhebl1; small GT 99.8 2.5E-20 8.7E-25 173.8 11.5 163 85-280 20-187 (201)
70 1ky3_A GTP-binding protein YPT 99.8 3.8E-20 1.3E-24 168.7 12.4 161 86-278 5-176 (182)
71 2hup_A RAS-related protein RAB 99.8 5.7E-20 1.9E-24 171.6 13.8 160 86-279 26-192 (201)
72 2ew1_A RAS-related protein RAB 99.8 4.7E-20 1.6E-24 172.4 13.2 160 86-279 23-188 (201)
73 1kao_A RAP2A; GTP-binding prot 99.8 1.1E-19 3.9E-24 162.8 15.1 155 89-278 3-164 (167)
74 3bc1_A RAS-related protein RAB 99.8 7E-20 2.4E-24 168.7 14.0 160 86-278 8-183 (195)
75 2bme_A RAB4A, RAS-related prot 99.8 3.9E-20 1.3E-24 169.7 12.0 158 87-278 8-171 (186)
76 3t5g_A GTP-binding protein RHE 99.8 2.3E-20 7.7E-25 170.6 10.3 158 88-280 5-169 (181)
77 2g6b_A RAS-related protein RAB 99.8 1.6E-19 5.4E-24 164.5 15.9 159 87-279 8-173 (180)
78 2bov_A RAla, RAS-related prote 99.8 2.1E-19 7.1E-24 167.6 17.0 159 86-279 11-176 (206)
79 2nzj_A GTP-binding protein REM 99.8 8.4E-20 2.9E-24 165.5 13.9 156 88-278 3-167 (175)
80 1wms_A RAB-9, RAB9, RAS-relate 99.8 9.6E-20 3.3E-24 165.5 14.2 158 87-278 5-172 (177)
81 2hxs_A RAB-26, RAS-related pro 99.8 1.3E-19 4.6E-24 164.7 15.2 161 87-281 4-174 (178)
82 2fu5_C RAS-related protein RAB 99.8 1.4E-20 4.9E-25 172.2 8.7 159 87-279 6-170 (183)
83 2a9k_A RAS-related protein RAL 99.8 2.2E-19 7.6E-24 164.3 16.4 156 88-278 17-179 (187)
84 1z06_A RAS-related protein RAB 99.8 5.9E-20 2E-24 169.4 12.5 159 87-279 18-187 (189)
85 1x3s_A RAS-related protein RAB 99.8 6.9E-20 2.4E-24 169.2 12.9 160 88-280 14-178 (195)
86 2hjg_A GTP-binding protein ENG 99.8 1E-19 3.5E-24 190.2 15.6 160 87-277 173-346 (436)
87 1upt_A ARL1, ADP-ribosylation 99.8 9.7E-20 3.3E-24 164.4 13.5 158 88-279 6-168 (171)
88 2bcg_Y Protein YP2, GTP-bindin 99.8 7.5E-20 2.6E-24 171.1 13.0 159 87-279 6-170 (206)
89 2il1_A RAB12; G-protein, GDP, 99.8 6.8E-20 2.3E-24 169.6 12.6 160 86-278 23-188 (192)
90 2wji_A Ferrous iron transport 99.8 1.9E-19 6.3E-24 162.5 15.1 153 89-278 3-163 (165)
91 3t1o_A Gliding protein MGLA; G 99.8 8.1E-20 2.8E-24 168.9 13.0 168 87-278 12-190 (198)
92 2h17_A ADP-ribosylation factor 99.8 6.3E-20 2.1E-24 168.1 11.9 157 87-277 19-180 (181)
93 1vg8_A RAS-related protein RAB 99.8 6.4E-20 2.2E-24 171.3 11.9 160 86-279 5-174 (207)
94 1f6b_A SAR1; gtpases, N-termin 99.8 8.6E-20 3E-24 170.0 12.7 159 88-278 24-197 (198)
95 1m2o_B GTP-binding protein SAR 99.8 1.4E-19 5E-24 167.3 14.0 159 88-278 22-190 (190)
96 2h57_A ADP-ribosylation factor 99.8 1.7E-19 5.7E-24 166.5 14.3 160 87-279 19-186 (190)
97 3cph_A RAS-related protein SEC 99.8 1.3E-19 4.5E-24 170.0 13.7 157 87-278 18-180 (213)
98 3q85_A GTP-binding protein REM 99.8 1.3E-19 4.3E-24 163.4 13.0 156 89-278 2-165 (169)
99 2b6h_A ADP-ribosylation factor 99.8 3.6E-19 1.2E-23 164.9 16.1 159 87-279 27-190 (192)
100 3iby_A Ferrous iron transport 99.8 9.1E-20 3.1E-24 176.8 12.6 150 90-277 2-164 (256)
101 2ce2_X GTPase HRAS; signaling 99.8 6.7E-19 2.3E-23 157.4 17.1 154 89-278 3-163 (166)
102 1fzq_A ADP-ribosylation factor 99.8 3.4E-19 1.2E-23 163.4 15.5 160 87-280 14-178 (181)
103 3reg_A RHO-like small GTPase; 99.8 9.5E-20 3.3E-24 168.7 11.7 161 86-279 20-187 (194)
104 3pqc_A Probable GTP-binding pr 99.8 3.4E-19 1.2E-23 164.4 15.4 160 86-279 20-193 (195)
105 2gf0_A GTP-binding protein DI- 99.8 6.8E-19 2.3E-23 163.2 17.4 161 87-281 6-172 (199)
106 3q72_A GTP-binding protein RAD 99.8 1.8E-19 6.1E-24 161.9 13.1 156 89-278 2-162 (166)
107 3bwd_D RAC-like GTP-binding pr 99.8 5.5E-20 1.9E-24 167.9 9.6 164 87-281 6-182 (182)
108 2fh5_B SR-beta, signal recogni 99.8 4.8E-19 1.6E-23 166.6 16.2 162 87-277 5-213 (214)
109 2atx_A Small GTP binding prote 99.8 1E-19 3.5E-24 168.4 11.4 160 88-280 17-193 (194)
110 3gj0_A GTP-binding nuclear pro 99.8 7.9E-20 2.7E-24 173.0 10.6 160 86-279 12-174 (221)
111 4dsu_A GTPase KRAS, isoform 2B 99.8 5.1E-19 1.7E-23 162.4 15.7 156 88-279 3-165 (189)
112 2gj8_A MNME, tRNA modification 99.8 3.1E-19 1.1E-23 162.4 14.0 152 89-280 4-166 (172)
113 2o52_A RAS-related protein RAB 99.8 6.7E-20 2.3E-24 170.9 9.8 158 87-278 23-186 (200)
114 4dcu_A GTP-binding protein ENG 99.8 5.5E-19 1.9E-23 185.7 17.7 164 87-278 193-367 (456)
115 2f7s_A C25KG, RAS-related prot 99.8 1.2E-19 4.2E-24 171.0 11.4 161 86-278 22-197 (217)
116 3i8s_A Ferrous iron transport 99.8 1.6E-19 5.5E-24 177.0 12.4 155 89-281 3-170 (274)
117 3cpj_B GTP-binding protein YPT 99.8 1.1E-19 3.7E-24 172.5 10.8 162 86-281 10-177 (223)
118 1ksh_A ARF-like protein 2; sma 99.8 1.6E-19 5.6E-24 165.7 11.6 159 87-279 16-179 (186)
119 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.6E-19 5.4E-24 165.3 11.2 161 89-282 5-182 (186)
120 3c5c_A RAS-like protein 12; GD 99.8 3.8E-19 1.3E-23 164.0 13.7 158 87-278 19-184 (187)
121 3q3j_B RHO-related GTP-binding 99.8 1.8E-19 6.3E-24 169.9 11.5 162 87-280 25-203 (214)
122 3cbq_A GTP-binding protein REM 99.8 4.9E-19 1.7E-23 164.5 13.9 162 86-281 20-189 (195)
123 4gzl_A RAS-related C3 botulinu 99.8 2.5E-19 8.5E-24 167.6 11.2 159 87-278 28-203 (204)
124 1mky_A Probable GTP-binding pr 99.8 8.1E-19 2.8E-23 183.6 15.9 155 90-280 2-166 (439)
125 2wjg_A FEOB, ferrous iron tran 99.8 7.5E-19 2.6E-23 161.4 13.6 157 88-281 6-170 (188)
126 2j0v_A RAC-like GTP-binding pr 99.8 3E-19 1E-23 167.7 11.2 163 87-282 7-182 (212)
127 3llu_A RAS-related GTP-binding 99.8 9.3E-19 3.2E-23 162.5 14.3 163 86-278 17-195 (196)
128 2fv8_A H6, RHO-related GTP-bin 99.8 3.9E-19 1.3E-23 166.6 11.6 159 88-281 24-201 (207)
129 2q3h_A RAS homolog gene family 99.8 4.6E-19 1.6E-23 164.9 12.0 161 86-279 17-194 (201)
130 3a1s_A Iron(II) transport prot 99.8 6.5E-19 2.2E-23 171.1 13.4 155 88-279 4-166 (258)
131 3con_A GTPase NRAS; structural 99.8 1.2E-18 4.1E-23 160.4 14.3 155 88-278 20-181 (190)
132 1ega_A Protein (GTP-binding pr 99.8 2.5E-19 8.6E-24 178.0 10.4 160 88-280 7-175 (301)
133 3ihw_A Centg3; RAS, centaurin, 99.8 2.2E-18 7.5E-23 158.5 15.7 154 86-278 17-178 (184)
134 1moz_A ARL1, ADP-ribosylation 99.8 2.1E-19 7.3E-24 164.2 8.9 158 87-278 16-178 (183)
135 2xtp_A GTPase IMAP family memb 99.8 8.2E-19 2.8E-23 170.5 13.4 167 87-280 20-208 (260)
136 4djt_A GTP-binding nuclear pro 99.8 2E-19 7E-24 169.6 8.7 161 86-280 8-175 (218)
137 3k53_A Ferrous iron transport 99.8 7.8E-19 2.7E-23 171.9 12.9 153 88-278 2-164 (271)
138 2atv_A RERG, RAS-like estrogen 99.8 3.2E-18 1.1E-22 158.7 16.3 157 87-278 26-189 (196)
139 2yc2_C IFT27, small RAB-relate 99.8 9.4E-20 3.2E-24 170.1 5.9 157 88-278 19-190 (208)
140 2x77_A ADP-ribosylation factor 99.8 3.6E-19 1.2E-23 164.0 9.5 159 87-279 20-183 (189)
141 2gco_A H9, RHO-related GTP-bin 99.8 6.8E-19 2.3E-23 164.1 11.0 157 88-277 24-197 (201)
142 2iwr_A Centaurin gamma 1; ANK 99.8 3E-18 1E-22 155.9 15.0 153 87-278 5-167 (178)
143 3b1v_A Ferrous iron uptake tra 99.8 8.6E-19 3E-23 171.3 11.9 154 89-280 3-164 (272)
144 2j1l_A RHO-related GTP-binding 99.8 1.5E-18 5.3E-23 163.5 12.8 158 88-278 33-207 (214)
145 2qu8_A Putative nucleolar GTP- 99.8 5.2E-18 1.8E-22 161.4 16.5 162 87-279 27-204 (228)
146 3l0i_B RAS-related protein RAB 99.8 1.6E-20 5.6E-25 174.8 -1.5 159 87-279 31-195 (199)
147 1m7b_A RND3/RHOE small GTP-bin 99.8 1.1E-18 3.8E-23 160.2 10.4 161 87-278 5-181 (184)
148 2hjg_A GTP-binding protein ENG 99.8 7.7E-19 2.6E-23 183.5 10.3 154 90-280 4-165 (436)
149 1gwn_A RHO-related GTP-binding 99.8 1E-18 3.5E-23 163.7 10.1 159 86-277 25-201 (205)
150 3lxw_A GTPase IMAP family memb 99.8 4.1E-18 1.4E-22 164.4 14.5 161 88-280 20-208 (247)
151 3o47_A ADP-ribosylation factor 99.8 2.3E-18 7.8E-23 173.2 12.7 158 88-279 164-326 (329)
152 3gee_A MNME, tRNA modification 99.7 2E-18 7E-23 181.2 11.0 155 89-281 233-400 (476)
153 1lnz_A SPO0B-associated GTP-bi 99.7 1.2E-18 4E-23 175.5 7.5 158 88-281 157-331 (342)
154 1mky_A Probable GTP-binding pr 99.7 2.7E-17 9.2E-22 172.0 16.6 163 88-278 179-353 (439)
155 2cxx_A Probable GTP-binding pr 99.7 1.1E-17 3.8E-22 153.6 12.0 156 90-279 2-183 (190)
156 1xzp_A Probable tRNA modificat 99.7 1.8E-17 6.1E-22 174.2 15.0 152 90-279 244-404 (482)
157 3lvq_E ARF-GAP with SH3 domain 99.7 1.8E-17 6E-22 176.3 14.5 160 87-280 320-484 (497)
158 3th5_A RAS-related C3 botulinu 99.6 3.1E-19 1E-23 166.7 0.0 166 87-277 28-202 (204)
159 4dcu_A GTP-binding protein ENG 99.7 2.9E-18 1E-22 180.2 7.1 156 88-280 22-185 (456)
160 3r7w_A Gtpase1, GTP-binding pr 99.7 3.8E-17 1.3E-21 162.7 14.6 161 89-279 3-180 (307)
161 2g3y_A GTP-binding protein GEM 99.7 1.7E-17 6E-22 156.0 11.5 159 86-278 34-201 (211)
162 3geh_A MNME, tRNA modification 99.7 1.1E-17 3.9E-22 174.9 10.9 154 89-281 224-385 (462)
163 3t5d_A Septin-7; GTP-binding p 99.7 3.9E-17 1.3E-21 160.0 13.1 168 87-280 6-204 (274)
164 2zej_A Dardarin, leucine-rich 99.7 3.3E-17 1.1E-21 150.4 9.5 163 90-280 3-178 (184)
165 2cjw_A GTP-binding protein GEM 99.7 1.2E-16 4.1E-21 147.9 13.3 157 88-278 5-170 (192)
166 3dpu_A RAB family protein; roc 99.7 3.7E-17 1.3E-21 175.2 10.7 162 86-281 38-209 (535)
167 2wkq_A NPH1-1, RAS-related C3 99.7 8.4E-17 2.9E-21 161.4 12.5 163 86-281 152-331 (332)
168 2f9l_A RAB11B, member RAS onco 99.7 1.6E-16 5.5E-21 147.7 13.1 157 88-278 4-166 (199)
169 1nrj_B SR-beta, signal recogni 99.7 3.3E-16 1.1E-20 147.5 12.9 146 87-255 10-169 (218)
170 1oix_A RAS-related protein RAB 99.7 5.3E-16 1.8E-20 143.4 13.7 158 87-278 27-190 (191)
171 2qtf_A Protein HFLX, GTP-bindi 99.7 5.7E-16 2E-20 157.4 14.8 165 88-282 178-356 (364)
172 3r7w_B Gtpase2, GTP-binding pr 99.7 5E-16 1.7E-20 153.8 13.3 162 91-280 1-174 (331)
173 2aka_B Dynamin-1; fusion prote 99.7 1.3E-15 4.5E-20 150.7 16.4 176 87-277 24-250 (299)
174 3lxx_A GTPase IMAP family memb 99.6 5.5E-16 1.9E-20 148.6 12.0 166 86-278 26-212 (239)
175 3def_A T7I23.11 protein; chlor 99.6 3.3E-15 1.1E-19 145.3 17.6 117 87-218 34-165 (262)
176 2e87_A Hypothetical protein PH 99.6 1.6E-15 5.4E-20 154.3 15.8 156 87-278 165-334 (357)
177 1jwy_B Dynamin A GTPase domain 99.6 1.3E-15 4.5E-20 152.0 13.7 117 150-281 129-263 (315)
178 2qag_A Septin-2, protein NEDD5 99.6 9.3E-16 3.2E-20 156.0 12.0 201 86-317 34-265 (361)
179 1pui_A ENGB, probable GTP-bind 99.6 5.2E-15 1.8E-19 138.3 11.9 163 86-280 23-199 (210)
180 3c5h_A Glucocorticoid receptor 99.6 3.1E-15 1.1E-19 144.9 9.8 172 86-278 16-253 (255)
181 2j69_A Bacterial dynamin-like 99.6 1.2E-14 4.1E-19 159.7 14.7 182 88-279 68-324 (695)
182 1h65_A Chloroplast outer envel 99.6 4.2E-14 1.4E-18 138.1 16.9 118 87-219 37-169 (270)
183 1udx_A The GTP-binding protein 99.6 7.1E-15 2.4E-19 151.4 12.0 157 88-280 156-325 (416)
184 2ged_A SR-beta, signal recogni 99.6 7.9E-15 2.7E-19 135.1 10.5 126 87-232 46-185 (193)
185 2x2e_A Dynamin-1; nitration, h 99.5 2.9E-14 9.9E-19 144.7 11.6 175 87-276 29-254 (353)
186 3p32_A Probable GTPase RV1496/ 99.5 1.3E-14 4.3E-19 147.5 8.7 173 86-279 76-283 (355)
187 2p67_A LAO/AO transport system 99.5 2E-14 6.9E-19 145.1 8.6 177 85-279 52-260 (341)
188 1wxq_A GTP-binding protein; st 99.5 8.8E-15 3E-19 150.3 5.9 83 90-188 1-114 (397)
189 3t34_A Dynamin-related protein 99.4 3.4E-13 1.2E-17 137.2 12.5 160 88-255 33-246 (360)
190 2wsm_A Hydrogenase expression/ 99.4 5.6E-14 1.9E-18 132.5 5.7 171 86-280 27-214 (221)
191 3zvr_A Dynamin-1; hydrolase, D 99.4 7.5E-13 2.6E-17 144.6 14.8 174 88-276 50-274 (772)
192 2qpt_A EH domain-containing pr 99.4 4.1E-13 1.4E-17 143.6 12.0 132 87-218 63-232 (550)
193 1cip_A Protein (guanine nucleo 99.4 8.7E-13 3E-17 133.1 10.7 132 137-278 178-342 (353)
194 2www_A Methylmalonic aciduria 99.4 1.6E-12 5.5E-17 131.4 11.4 113 149-278 164-277 (349)
195 1jal_A YCHF protein; nucleotid 99.3 1.3E-11 4.3E-16 124.4 13.4 82 90-187 3-108 (363)
196 2qag_C Septin-7; cell cycle, c 99.3 1.8E-11 6.3E-16 126.0 12.6 167 87-279 29-226 (418)
197 2qnr_A Septin-2, protein NEDD5 99.3 2.4E-11 8.3E-16 120.2 12.3 155 87-257 16-201 (301)
198 2dby_A GTP-binding protein; GD 99.2 8.1E-11 2.8E-15 119.3 15.4 82 90-187 2-111 (368)
199 1yrb_A ATP(GTP)binding protein 99.2 6.4E-12 2.2E-16 121.6 6.8 114 152-279 109-256 (262)
200 4a9a_A Ribosome-interacting GT 99.2 3.2E-11 1.1E-15 122.1 11.8 115 86-217 69-195 (376)
201 4fid_A G protein alpha subunit 99.2 1.5E-11 5.2E-16 122.8 9.0 133 136-278 145-326 (340)
202 2hf9_A Probable hydrogenase ni 99.2 3.1E-11 1.1E-15 113.9 8.9 169 87-278 36-222 (226)
203 3ohm_A Guanine nucleotide-bind 99.2 3.2E-11 1.1E-15 119.9 8.3 132 136-278 151-316 (327)
204 3e1y_E Eukaryotic peptide chai 99.1 1.5E-10 5E-15 107.7 9.6 84 285-377 3-90 (204)
205 2qm8_A GTPase/ATPase; G protei 99.1 1.8E-10 6.1E-15 115.8 8.9 114 149-279 145-260 (337)
206 2j37_W Signal recognition part 99.0 1.1E-10 3.6E-15 122.8 5.3 176 87-277 99-310 (504)
207 1zcb_A G alpha I/13; GTP-bindi 99.0 1.9E-10 6.5E-15 116.4 6.3 131 138-278 187-351 (362)
208 2qag_B Septin-6, protein NEDD5 98.9 1.3E-08 4.3E-13 104.5 13.9 149 83-251 36-217 (427)
209 1azs_C GS-alpha; complex (lyas 98.8 2E-09 6.7E-14 109.9 5.5 79 139-217 204-297 (402)
210 3ec1_A YQEH GTPase; atnos1, at 98.8 7.1E-10 2.4E-14 112.8 0.7 117 89-218 162-288 (369)
211 2xtz_A Guanine nucleotide-bind 98.8 4.2E-09 1.4E-13 106.2 4.8 119 150-278 181-343 (354)
212 1tq4_A IIGP1, interferon-induc 98.8 7.4E-08 2.5E-12 98.8 14.2 164 89-281 69-254 (413)
213 1u0l_A Probable GTPase ENGC; p 98.8 1E-08 3.4E-13 101.4 7.5 103 153-275 64-168 (301)
214 2ohf_A Protein OLA1, GTP-bindi 98.7 9.9E-09 3.4E-13 104.4 7.3 84 88-187 21-128 (396)
215 3sop_A Neuronal-specific septi 98.7 7.7E-08 2.6E-12 93.4 12.1 123 90-218 3-154 (270)
216 3h2y_A GTPase family protein; 98.7 1.4E-09 4.9E-14 110.5 -0.3 116 90-218 161-287 (368)
217 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 2.9E-07 9.8E-12 93.8 10.2 84 88-187 19-127 (392)
218 3l82_B F-box only protein 4; T 98.5 4.5E-07 1.6E-11 83.2 9.7 112 153-280 97-223 (227)
219 3dm5_A SRP54, signal recogniti 98.4 2.1E-06 7.1E-11 88.5 13.6 126 88-217 99-252 (443)
220 2v3c_C SRP54, signal recogniti 98.4 2.1E-07 7.1E-12 96.3 5.8 127 88-217 98-251 (432)
221 3kl4_A SRP54, signal recogniti 98.3 2.2E-06 7.5E-11 88.2 11.7 126 88-217 96-251 (433)
222 2yv5_A YJEQ protein; hydrolase 98.3 4.6E-07 1.6E-11 89.4 5.2 96 162-274 66-163 (302)
223 3l2o_B F-box only protein 4; s 98.2 4.3E-06 1.5E-10 80.5 10.1 105 160-280 195-308 (312)
224 1puj_A YLQF, conserved hypothe 98.2 2.9E-06 9.9E-11 82.7 8.9 102 156-279 3-105 (282)
225 1f5n_A Interferon-induced guan 98.2 1.3E-06 4.5E-11 93.3 6.8 105 87-204 36-149 (592)
226 1xe1_A Hypothetical protein PF 98.1 1.3E-05 4.5E-10 65.7 9.4 78 287-374 33-113 (116)
227 3ec1_A YQEH GTPase; atnos1, at 98.1 5.5E-06 1.9E-10 84.0 7.8 109 153-278 50-160 (369)
228 1puj_A YLQF, conserved hypothe 98.1 4.1E-06 1.4E-10 81.7 6.5 60 87-164 118-177 (282)
229 1j8m_F SRP54, signal recogniti 98.0 7.8E-06 2.7E-10 80.3 8.0 122 89-217 98-252 (297)
230 2xxa_A Signal recognition part 98.0 8.2E-06 2.8E-10 84.3 7.6 124 87-217 98-253 (433)
231 1d1n_A Initiation factor 2; be 98.0 2.1E-05 7.1E-10 62.7 7.4 80 291-374 9-90 (99)
232 3e70_C DPA, signal recognition 97.9 6.1E-05 2.1E-09 74.9 11.6 125 88-216 128-280 (328)
233 3h2y_A GTPase family protein; 97.9 1.1E-05 3.9E-10 81.6 6.2 100 161-278 55-158 (368)
234 3cnl_A YLQF, putative uncharac 97.8 6.3E-06 2.2E-10 79.4 3.4 58 90-165 100-157 (262)
235 3szr_A Interferon-induced GTP- 97.8 6.2E-05 2.1E-09 81.3 10.3 68 152-219 147-229 (608)
236 3cnl_A YLQF, putative uncharac 97.8 1.3E-05 4.3E-10 77.3 4.1 93 160-277 5-98 (262)
237 2crv_A IF-2MT, translation ini 97.8 8.2E-05 2.8E-09 61.4 8.1 81 290-374 12-98 (120)
238 4dzz_A Plasmid partitioning pr 97.8 0.00014 4.7E-09 66.7 10.9 64 151-217 75-143 (206)
239 2yhs_A FTSY, cell division pro 97.5 0.00021 7.2E-09 74.3 9.0 123 89-216 293-450 (503)
240 1zu4_A FTSY; GTPase, signal re 97.4 0.00019 6.5E-09 71.1 7.1 123 88-217 104-267 (320)
241 2ffh_A Protein (FFH); SRP54, s 97.3 0.00052 1.8E-08 70.4 9.2 125 88-217 97-250 (425)
242 1rj9_A FTSY, signal recognitio 97.3 0.00069 2.3E-08 66.5 9.3 124 89-217 102-260 (304)
243 1vma_A Cell division protein F 97.3 0.00053 1.8E-08 67.4 8.4 25 88-112 103-127 (306)
244 1t9h_A YLOQ, probable GTPase E 97.2 0.0003 1E-08 69.1 5.8 84 172-272 83-169 (307)
245 2px0_A Flagellar biosynthesis 97.2 0.00044 1.5E-08 67.7 6.9 126 88-217 104-252 (296)
246 3q5d_A Atlastin-1; G protein, 97.2 0.001 3.4E-08 68.6 9.7 26 87-112 65-90 (447)
247 3cwq_A Para family chromosome 97.2 0.00053 1.8E-08 63.4 6.5 120 92-218 3-134 (209)
248 1ls1_A Signal recognition part 96.9 0.0015 5E-08 63.9 7.6 125 88-217 97-250 (295)
249 1zo1_I IF2, translation initia 96.9 0.0017 5.9E-08 68.0 8.4 105 267-375 384-493 (501)
250 2rcn_A Probable GTPase ENGC; Y 96.7 0.003 1E-07 63.2 8.1 83 173-273 128-212 (358)
251 3b9q_A Chloroplast SRP recepto 96.6 0.0059 2E-07 59.7 8.8 124 89-217 100-259 (302)
252 3kjh_A CO dehydrogenase/acetyl 96.6 0.0044 1.5E-07 58.2 7.7 64 150-215 130-194 (254)
253 3izy_P Translation initiation 96.5 0.01 3.6E-07 62.6 10.5 103 267-373 423-534 (537)
254 3cio_A ETK, tyrosine-protein k 96.5 0.015 5.1E-07 56.8 11.0 65 152-217 214-279 (299)
255 3end_A Light-independent proto 96.5 0.0042 1.4E-07 60.8 7.0 65 151-216 156-225 (307)
256 1bif_A 6-phosphofructo-2-kinas 96.4 0.00058 2E-08 71.4 0.5 106 89-210 39-155 (469)
257 2og2_A Putative signal recogni 96.3 0.014 4.8E-07 58.4 9.5 25 89-113 157-181 (359)
258 1t9h_A YLOQ, probable GTPase E 96.2 0.0018 6E-08 63.6 2.2 24 90-113 174-197 (307)
259 2yv5_A YJEQ protein; hydrolase 95.9 0.01 3.5E-07 58.1 6.4 23 90-113 166-188 (302)
260 1ye8_A Protein THEP1, hypothet 95.6 0.0067 2.3E-07 54.4 3.4 24 91-114 2-25 (178)
261 2ph1_A Nucleotide-binding prot 95.5 0.033 1.1E-06 53.0 8.3 67 150-216 127-194 (262)
262 1lvg_A Guanylate kinase, GMP k 95.4 0.0075 2.6E-07 55.0 3.0 24 90-113 5-28 (198)
263 1kgd_A CASK, peripheral plasma 95.3 0.011 3.6E-07 53.0 3.8 24 90-113 6-29 (180)
264 4ido_A Atlastin-1; GTPase, GTP 95.3 0.069 2.4E-06 54.8 10.1 113 86-202 64-195 (457)
265 1u0l_A Probable GTPase ENGC; p 95.1 0.013 4.3E-07 57.3 3.9 25 90-114 170-194 (301)
266 3ney_A 55 kDa erythrocyte memb 95.1 0.015 5E-07 53.1 3.9 27 88-114 18-44 (197)
267 1znw_A Guanylate kinase, GMP k 95.0 0.012 4E-07 54.0 3.1 24 90-113 21-44 (207)
268 3a00_A Guanylate kinase, GMP k 94.9 0.012 4.2E-07 52.8 3.0 23 91-113 3-25 (186)
269 1zp6_A Hypothetical protein AT 94.9 0.017 5.7E-07 51.9 3.9 24 89-112 9-32 (191)
270 3tr0_A Guanylate kinase, GMP k 94.9 0.013 4.4E-07 53.2 3.2 24 90-113 8-31 (205)
271 3asz_A Uridine kinase; cytidin 94.8 0.018 6.2E-07 52.7 3.8 24 89-112 6-29 (211)
272 1z6g_A Guanylate kinase; struc 94.8 0.015 5E-07 53.9 3.1 24 90-113 24-47 (218)
273 2yvu_A Probable adenylyl-sulfa 94.7 0.25 8.4E-06 43.9 11.2 26 88-113 12-37 (186)
274 3c8u_A Fructokinase; YP_612366 94.7 0.018 6.2E-07 52.7 3.6 26 88-113 21-46 (208)
275 1wcv_1 SOJ, segregation protei 94.7 0.095 3.3E-06 49.5 8.8 81 150-232 110-197 (257)
276 1s96_A Guanylate kinase, GMP k 94.7 0.016 5.6E-07 53.8 3.2 25 90-114 17-41 (219)
277 1htw_A HI0065; nucleotide-bind 94.7 0.017 5.8E-07 50.7 3.1 25 89-113 33-57 (158)
278 1knq_A Gluconate kinase; ALFA/ 94.6 0.024 8.3E-07 50.1 4.0 25 89-113 8-32 (175)
279 3zvl_A Bifunctional polynucleo 94.5 0.094 3.2E-06 53.6 8.8 90 88-215 257-346 (416)
280 4eun_A Thermoresistant glucoki 94.4 0.024 8.3E-07 51.5 3.6 26 88-113 28-53 (200)
281 3bfv_A CAPA1, CAPB2, membrane 94.3 0.11 3.6E-06 49.8 8.2 65 152-217 192-257 (271)
282 3tif_A Uncharacterized ABC tra 94.3 0.017 5.7E-07 54.3 2.4 23 90-112 32-54 (235)
283 4gp7_A Metallophosphoesterase; 94.3 0.021 7.1E-07 50.6 2.9 20 91-110 11-30 (171)
284 2pcj_A ABC transporter, lipopr 94.2 0.019 6.5E-07 53.5 2.6 22 91-112 32-53 (224)
285 2f1r_A Molybdopterin-guanine d 94.2 0.017 5.7E-07 51.5 2.0 23 90-112 3-25 (171)
286 2j41_A Guanylate kinase; GMP, 94.2 0.03 1E-06 50.7 3.7 24 90-113 7-30 (207)
287 1kag_A SKI, shikimate kinase I 94.2 0.026 9E-07 49.6 3.2 25 90-114 5-29 (173)
288 3tau_A Guanylate kinase, GMP k 94.1 0.032 1.1E-06 51.1 3.9 25 89-113 8-32 (208)
289 3kb2_A SPBC2 prophage-derived 94.1 0.028 9.5E-07 49.3 3.4 25 90-114 2-26 (173)
290 2onk_A Molybdate/tungstate ABC 94.1 0.024 8.2E-07 53.4 2.9 24 90-113 25-48 (240)
291 1np6_A Molybdopterin-guanine d 94.1 0.031 1.1E-06 49.8 3.5 24 89-112 6-29 (174)
292 1ex7_A Guanylate kinase; subst 94.0 0.029 9.8E-07 50.7 3.2 22 92-113 4-25 (186)
293 1g7s_A Translation initiation 94.0 0.16 5.5E-06 54.3 9.5 73 295-375 472-549 (594)
294 2rcn_A Probable GTPase ENGC; Y 94.0 0.025 8.6E-07 56.5 3.0 25 90-114 216-240 (358)
295 2p5t_B PEZT; postsegregational 94.0 0.21 7.3E-06 47.0 9.5 27 88-114 31-57 (253)
296 3b85_A Phosphate starvation-in 93.9 0.026 8.9E-07 51.9 2.8 22 91-112 24-45 (208)
297 2eyu_A Twitching motility prot 93.9 0.032 1.1E-06 53.3 3.4 24 89-112 25-48 (261)
298 2cbz_A Multidrug resistance-as 93.8 0.026 8.9E-07 53.0 2.6 23 90-112 32-54 (237)
299 1sgw_A Putative ABC transporte 93.8 0.025 8.5E-07 52.3 2.4 22 91-112 37-58 (214)
300 3n70_A Transport activator; si 93.8 0.18 6.2E-06 43.0 7.9 25 88-112 23-47 (145)
301 2v9p_A Replication protein E1; 93.8 0.032 1.1E-06 54.5 3.3 28 86-113 123-150 (305)
302 1b0u_A Histidine permease; ABC 93.8 0.025 8.4E-07 54.1 2.4 23 90-112 33-55 (262)
303 3gfo_A Cobalt import ATP-bindi 93.8 0.025 8.4E-07 54.5 2.4 22 91-112 36-57 (275)
304 2bdt_A BH3686; alpha-beta prot 93.8 0.032 1.1E-06 50.0 3.1 21 91-111 4-24 (189)
305 3bos_A Putative DNA replicatio 93.8 0.059 2E-06 49.7 5.0 26 88-113 51-76 (242)
306 1hyq_A MIND, cell division inh 93.8 0.12 4E-06 48.9 7.2 65 151-217 110-175 (263)
307 1xjc_A MOBB protein homolog; s 93.7 0.04 1.4E-06 48.9 3.5 24 89-112 4-27 (169)
308 2d2e_A SUFC protein; ABC-ATPas 93.7 0.03 1E-06 53.1 2.9 22 91-112 31-52 (250)
309 2i3b_A HCR-ntpase, human cance 93.7 0.031 1.1E-06 50.5 2.9 23 91-113 3-25 (189)
310 1g6h_A High-affinity branched- 93.7 0.025 8.6E-07 53.8 2.4 22 91-112 35-56 (257)
311 2pze_A Cystic fibrosis transme 93.7 0.028 9.6E-07 52.5 2.7 22 91-112 36-57 (229)
312 1mv5_A LMRA, multidrug resista 93.7 0.028 9.6E-07 53.0 2.7 24 90-113 29-52 (243)
313 4g1u_C Hemin import ATP-bindin 93.7 0.025 8.4E-07 54.2 2.3 23 91-113 39-61 (266)
314 3uie_A Adenylyl-sulfate kinase 93.7 0.047 1.6E-06 49.5 4.1 26 88-113 24-49 (200)
315 2ff7_A Alpha-hemolysin translo 93.7 0.028 9.7E-07 53.1 2.6 22 91-112 37-58 (247)
316 2if2_A Dephospho-COA kinase; a 93.7 0.041 1.4E-06 49.9 3.6 22 90-111 2-23 (204)
317 2qor_A Guanylate kinase; phosp 93.6 0.036 1.2E-06 50.5 3.2 25 89-113 12-36 (204)
318 1g3q_A MIND ATPase, cell divis 93.6 0.17 5.9E-06 46.8 7.9 66 151-218 111-177 (237)
319 1ji0_A ABC transporter; ATP bi 93.6 0.027 9.4E-07 53.0 2.4 22 91-112 34-55 (240)
320 2zu0_C Probable ATP-dependent 93.6 0.033 1.1E-06 53.3 2.9 22 91-112 48-69 (267)
321 3lw7_A Adenylate kinase relate 93.5 0.038 1.3E-06 48.2 3.1 23 90-113 2-24 (179)
322 2olj_A Amino acid ABC transpor 93.5 0.029 9.9E-07 53.6 2.4 23 90-112 51-73 (263)
323 2ghi_A Transport protein; mult 93.5 0.032 1.1E-06 53.2 2.6 23 90-112 47-69 (260)
324 1vpl_A ABC transporter, ATP-bi 93.5 0.03 1E-06 53.3 2.4 22 91-112 43-64 (256)
325 3vaa_A Shikimate kinase, SK; s 93.5 0.047 1.6E-06 49.5 3.7 27 88-114 24-50 (199)
326 3t61_A Gluconokinase; PSI-biol 93.4 0.043 1.5E-06 49.7 3.4 26 89-114 18-43 (202)
327 3syl_A Protein CBBX; photosynt 93.4 0.27 9.2E-06 47.5 9.3 28 86-113 64-91 (309)
328 2qi9_C Vitamin B12 import ATP- 93.4 0.034 1.2E-06 52.7 2.7 23 91-113 28-50 (249)
329 2bbw_A Adenylate kinase 4, AK4 93.3 0.046 1.6E-06 51.4 3.5 25 89-113 27-51 (246)
330 1nks_A Adenylate kinase; therm 93.3 0.053 1.8E-06 48.3 3.8 24 90-113 2-25 (194)
331 2oze_A ORF delta'; para, walke 93.3 0.14 4.8E-06 49.4 7.0 65 151-217 154-225 (298)
332 3aez_A Pantothenate kinase; tr 93.3 0.055 1.9E-06 53.0 4.1 26 87-112 88-113 (312)
333 1y63_A LMAJ004144AAA protein; 93.3 0.057 2E-06 48.3 3.9 25 88-112 9-33 (184)
334 1cke_A CK, MSSA, protein (cyti 93.3 0.047 1.6E-06 50.3 3.4 24 90-113 6-29 (227)
335 2ixe_A Antigen peptide transpo 93.3 0.035 1.2E-06 53.2 2.6 23 90-112 46-68 (271)
336 2ihy_A ABC transporter, ATP-bi 93.3 0.036 1.2E-06 53.4 2.7 22 91-112 49-70 (279)
337 1ly1_A Polynucleotide kinase; 93.3 0.053 1.8E-06 47.8 3.6 22 90-111 3-24 (181)
338 2yz2_A Putative ABC transporte 93.2 0.034 1.2E-06 53.2 2.4 23 90-112 34-56 (266)
339 4a74_A DNA repair and recombin 93.2 0.046 1.6E-06 50.3 3.2 24 90-113 26-49 (231)
340 2nq2_C Hypothetical ABC transp 93.2 0.035 1.2E-06 52.7 2.4 22 91-112 33-54 (253)
341 3lnc_A Guanylate kinase, GMP k 93.1 0.03 1E-06 52.1 1.8 23 90-112 28-51 (231)
342 4fcw_A Chaperone protein CLPB; 93.1 0.26 8.8E-06 47.6 8.6 25 89-113 47-71 (311)
343 3ec2_A DNA replication protein 93.1 0.043 1.5E-06 48.7 2.7 25 89-113 38-62 (180)
344 3k9g_A PF-32 protein; ssgcid, 93.0 0.23 8E-06 46.9 8.0 64 151-216 144-209 (267)
345 1ukz_A Uridylate kinase; trans 93.0 0.072 2.5E-06 48.2 4.1 28 87-114 13-40 (203)
346 2ehv_A Hypothetical protein PH 93.0 0.049 1.7E-06 50.9 3.0 22 90-111 31-52 (251)
347 3pfi_A Holliday junction ATP-d 92.9 0.35 1.2E-05 47.4 9.3 26 88-113 54-79 (338)
348 1nij_A Hypothetical protein YJ 92.9 0.054 1.8E-06 53.2 3.3 26 88-113 3-28 (318)
349 2qt1_A Nicotinamide riboside k 92.9 0.072 2.5E-06 48.4 4.0 26 87-112 19-44 (207)
350 2jaq_A Deoxyguanosine kinase; 92.9 0.061 2.1E-06 48.5 3.5 24 91-114 2-25 (205)
351 3trf_A Shikimate kinase, SK; a 92.9 0.062 2.1E-06 47.8 3.5 26 89-114 5-30 (185)
352 2jeo_A Uridine-cytidine kinase 92.9 0.066 2.3E-06 50.3 3.8 26 88-113 24-49 (245)
353 1jjv_A Dephospho-COA kinase; P 92.9 0.057 1.9E-06 49.1 3.3 22 90-111 3-24 (206)
354 1uf9_A TT1252 protein; P-loop, 92.9 0.075 2.6E-06 47.9 4.1 25 88-112 7-31 (203)
355 1sxj_A Activator 1 95 kDa subu 92.8 0.48 1.6E-05 49.7 10.8 25 89-113 77-101 (516)
356 3fvq_A Fe(3+) IONS import ATP- 92.8 0.051 1.7E-06 54.3 3.0 23 91-113 32-54 (359)
357 3tqc_A Pantothenate kinase; bi 92.8 0.072 2.5E-06 52.4 4.1 27 87-113 90-116 (321)
358 3nh6_A ATP-binding cassette SU 92.8 0.034 1.2E-06 54.3 1.7 24 89-112 80-103 (306)
359 3jvv_A Twitching mobility prot 92.8 0.056 1.9E-06 54.0 3.3 22 91-112 125-146 (356)
360 2pjz_A Hypothetical protein ST 92.8 0.047 1.6E-06 52.1 2.7 23 91-113 32-54 (263)
361 1qhx_A CPT, protein (chloramph 92.8 0.07 2.4E-06 47.1 3.6 25 90-114 4-28 (178)
362 1lw7_A Transcriptional regulat 92.7 0.055 1.9E-06 54.2 3.2 26 89-114 170-195 (365)
363 2gza_A Type IV secretion syste 92.7 0.048 1.6E-06 54.6 2.8 25 90-114 176-200 (361)
364 1rz3_A Hypothetical protein rb 92.7 0.082 2.8E-06 48.0 4.1 25 88-112 21-45 (201)
365 2rhm_A Putative kinase; P-loop 92.7 0.079 2.7E-06 47.3 3.9 25 89-113 5-29 (193)
366 1zd8_A GTP:AMP phosphotransfer 92.7 0.074 2.5E-06 49.2 3.8 26 89-114 7-32 (227)
367 2bbs_A Cystic fibrosis transme 92.7 0.051 1.7E-06 52.7 2.7 23 90-112 65-87 (290)
368 2b8t_A Thymidine kinase; deoxy 92.6 0.11 3.9E-06 48.1 5.0 43 177-219 89-131 (223)
369 3tui_C Methionine import ATP-b 92.6 0.055 1.9E-06 54.1 2.9 24 90-113 55-78 (366)
370 1odf_A YGR205W, hypothetical 3 92.6 0.08 2.7E-06 51.3 4.0 26 87-112 29-54 (290)
371 3ug7_A Arsenical pump-driving 92.6 0.8 2.7E-05 45.4 11.5 42 176-217 237-279 (349)
372 2wwf_A Thymidilate kinase, put 92.5 0.083 2.8E-06 48.0 3.9 24 89-112 10-33 (212)
373 3kta_A Chromosome segregation 92.5 0.071 2.4E-06 47.3 3.3 24 91-114 28-51 (182)
374 3tlx_A Adenylate kinase 2; str 92.5 0.098 3.4E-06 49.1 4.4 26 88-113 28-53 (243)
375 2vhj_A Ntpase P4, P4; non- hyd 92.5 0.17 5.9E-06 49.5 6.2 22 91-112 125-146 (331)
376 1sq5_A Pantothenate kinase; P- 92.5 0.086 2.9E-06 51.5 4.1 27 87-113 78-104 (308)
377 2pt7_A CAG-ALFA; ATPase, prote 92.5 0.046 1.6E-06 54.1 2.2 25 90-114 172-196 (330)
378 1qf9_A UMP/CMP kinase, protein 92.5 0.097 3.3E-06 46.6 4.2 25 89-113 6-30 (194)
379 1z47_A CYSA, putative ABC-tran 92.4 0.059 2E-06 53.8 2.9 23 91-113 43-65 (355)
380 3fb4_A Adenylate kinase; psych 92.4 0.072 2.4E-06 48.7 3.3 24 91-114 2-25 (216)
381 3dl0_A Adenylate kinase; phosp 92.4 0.078 2.7E-06 48.5 3.6 24 91-114 2-25 (216)
382 3iij_A Coilin-interacting nucl 92.4 0.082 2.8E-06 46.8 3.6 25 89-113 11-35 (180)
383 1kht_A Adenylate kinase; phosp 92.4 0.079 2.7E-06 47.1 3.5 23 90-112 4-26 (192)
384 3cm0_A Adenylate kinase; ATP-b 92.4 0.08 2.7E-06 47.0 3.5 24 90-113 5-28 (186)
385 3q9l_A Septum site-determining 92.3 0.17 5.7E-06 47.6 5.9 64 151-216 113-185 (260)
386 2yyz_A Sugar ABC transporter, 92.3 0.062 2.1E-06 53.7 2.9 23 91-113 31-53 (359)
387 3rlf_A Maltose/maltodextrin im 92.3 0.063 2.1E-06 54.0 2.9 24 91-114 31-54 (381)
388 2kjq_A DNAA-related protein; s 92.3 0.06 2E-06 46.6 2.4 25 89-113 36-60 (149)
389 2ewv_A Twitching motility prot 92.3 0.069 2.4E-06 53.7 3.3 24 89-112 136-159 (372)
390 2chg_A Replication factor C sm 92.3 0.16 5.5E-06 45.8 5.6 23 90-112 39-61 (226)
391 2it1_A 362AA long hypothetical 92.3 0.064 2.2E-06 53.7 2.9 24 90-113 30-53 (362)
392 2c95_A Adenylate kinase 1; tra 92.2 0.098 3.3E-06 46.8 3.8 26 89-114 9-34 (196)
393 1via_A Shikimate kinase; struc 92.2 0.074 2.5E-06 46.9 3.0 24 91-114 6-29 (175)
394 1nn5_A Similar to deoxythymidy 92.1 0.099 3.4E-06 47.5 3.9 24 89-112 9-32 (215)
395 1g29_1 MALK, maltose transport 92.1 0.067 2.3E-06 53.8 2.9 23 91-113 31-53 (372)
396 2cdn_A Adenylate kinase; phosp 92.1 0.1 3.6E-06 47.1 4.0 27 88-114 19-45 (201)
397 1v43_A Sugar-binding transport 92.1 0.069 2.4E-06 53.6 2.9 24 90-113 38-61 (372)
398 1tev_A UMP-CMP kinase; ploop, 92.0 0.094 3.2E-06 46.7 3.6 25 90-114 4-28 (196)
399 2v1u_A Cell division control p 92.0 0.35 1.2E-05 48.0 8.1 25 88-112 43-67 (387)
400 2oap_1 GSPE-2, type II secreti 92.0 0.063 2.1E-06 56.4 2.6 24 90-113 261-284 (511)
401 4a1f_A DNAB helicase, replicat 91.9 0.67 2.3E-05 45.7 9.9 23 90-112 47-69 (338)
402 4e22_A Cytidylate kinase; P-lo 91.9 0.11 3.7E-06 49.1 4.0 25 89-113 27-51 (252)
403 1aky_A Adenylate kinase; ATP:A 91.9 0.1 3.5E-06 48.0 3.7 26 89-114 4-29 (220)
404 3d31_A Sulfate/molybdate ABC t 91.9 0.059 2E-06 53.6 2.1 23 91-113 28-50 (348)
405 2plr_A DTMP kinase, probable t 91.8 0.11 3.8E-06 47.0 3.8 25 90-114 5-29 (213)
406 2v54_A DTMP kinase, thymidylat 91.8 0.11 3.9E-06 46.7 3.8 25 89-113 4-28 (204)
407 1gtv_A TMK, thymidylate kinase 91.7 0.055 1.9E-06 49.3 1.6 22 91-112 2-23 (214)
408 1p9r_A General secretion pathw 91.7 0.092 3.1E-06 53.6 3.3 26 89-114 167-192 (418)
409 3gd7_A Fusion complex of cysti 91.7 0.084 2.9E-06 53.4 3.0 23 90-112 48-70 (390)
410 1zak_A Adenylate kinase; ATP:A 91.7 0.1 3.5E-06 48.0 3.4 26 89-114 5-30 (222)
411 4b4t_L 26S protease subunit RP 91.6 1.3 4.3E-05 45.3 11.8 29 86-114 212-240 (437)
412 1byi_A Dethiobiotin synthase; 91.6 0.77 2.6E-05 41.9 9.4 67 151-217 108-180 (224)
413 2vli_A Antibiotic resistance p 91.6 0.087 3E-06 46.6 2.8 26 89-114 5-30 (183)
414 1hqc_A RUVB; extended AAA-ATPa 91.5 0.59 2E-05 45.3 9.0 25 89-113 38-62 (324)
415 1jbk_A CLPB protein; beta barr 91.5 0.12 4.3E-06 45.4 3.7 25 88-112 42-66 (195)
416 1gvn_B Zeta; postsegregational 91.4 0.12 4E-06 50.0 3.7 26 88-113 32-57 (287)
417 3ea0_A ATPase, para family; al 91.4 0.32 1.1E-05 45.1 6.6 65 152-218 119-186 (245)
418 2bwj_A Adenylate kinase 5; pho 91.3 0.12 4.2E-06 46.2 3.5 25 90-114 13-37 (199)
419 1oxx_K GLCV, glucose, ABC tran 91.3 0.059 2E-06 53.8 1.4 24 90-113 32-55 (353)
420 2pt5_A Shikimate kinase, SK; a 91.3 0.12 4.2E-06 44.9 3.4 24 91-114 2-25 (168)
421 3la6_A Tyrosine-protein kinase 91.2 0.59 2E-05 44.9 8.5 66 152-218 202-268 (286)
422 2ze6_A Isopentenyl transferase 91.2 0.13 4.3E-06 48.7 3.6 24 91-114 3-26 (253)
423 2x8a_A Nuclear valosin-contain 91.2 0.12 4E-06 49.6 3.4 24 90-113 45-68 (274)
424 1e4v_A Adenylate kinase; trans 91.2 0.13 4.3E-06 47.1 3.5 23 91-113 2-24 (214)
425 2pbr_A DTMP kinase, thymidylat 91.1 0.13 4.4E-06 45.9 3.4 22 91-112 2-23 (195)
426 1e6c_A Shikimate kinase; phosp 91.1 0.11 3.9E-06 45.4 3.0 25 90-114 3-27 (173)
427 1zuh_A Shikimate kinase; alpha 91.1 0.13 4.4E-06 44.9 3.3 27 88-114 6-32 (168)
428 2z0h_A DTMP kinase, thymidylat 91.0 0.12 4.1E-06 46.2 3.1 22 91-112 2-23 (197)
429 2pez_A Bifunctional 3'-phospho 91.0 0.15 5.1E-06 45.1 3.7 24 89-112 5-28 (179)
430 1uj2_A Uridine-cytidine kinase 91.0 0.15 5.1E-06 48.0 3.9 27 88-114 21-47 (252)
431 2w0m_A SSO2452; RECA, SSPF, un 90.9 0.12 4.2E-06 47.4 3.1 23 90-112 24-46 (235)
432 1vht_A Dephospho-COA kinase; s 90.9 0.14 4.9E-06 46.8 3.6 23 89-111 4-26 (218)
433 1ak2_A Adenylate kinase isoenz 90.8 0.16 5.3E-06 47.2 3.8 26 88-113 15-40 (233)
434 2iyv_A Shikimate kinase, SK; t 90.8 0.12 3.9E-06 46.0 2.8 24 91-114 4-27 (184)
435 1f2t_A RAD50 ABC-ATPase; DNA d 90.8 0.14 4.8E-06 44.2 3.2 22 91-112 25-46 (149)
436 3a4m_A L-seryl-tRNA(SEC) kinas 90.7 0.15 5.2E-06 48.3 3.7 24 89-112 4-27 (260)
437 2vp4_A Deoxynucleoside kinase; 90.7 0.1 3.6E-06 48.4 2.5 25 88-112 19-43 (230)
438 1ixz_A ATP-dependent metallopr 90.7 0.13 4.4E-06 48.4 3.2 25 89-113 49-73 (254)
439 3umf_A Adenylate kinase; rossm 90.6 0.19 6.4E-06 46.4 4.0 27 88-114 28-54 (217)
440 2npi_A Protein CLP1; CLP1-PCF1 90.6 0.13 4.4E-06 53.3 3.2 24 89-112 138-161 (460)
441 2f6r_A COA synthase, bifunctio 90.5 0.16 5.6E-06 48.7 3.8 24 88-111 74-97 (281)
442 2orw_A Thymidine kinase; TMTK, 90.5 0.62 2.1E-05 41.5 7.4 41 177-217 76-116 (184)
443 2xj4_A MIPZ; replication, cell 90.3 0.16 5.5E-06 48.8 3.6 33 152-186 104-136 (286)
444 3sr0_A Adenylate kinase; phosp 90.2 0.17 5.7E-06 46.4 3.3 25 91-115 2-26 (206)
445 2obl_A ESCN; ATPase, hydrolase 90.2 0.16 5.6E-06 50.4 3.5 26 88-113 70-95 (347)
446 3be4_A Adenylate kinase; malar 90.2 0.16 5.6E-06 46.5 3.3 25 90-114 6-30 (217)
447 2xb4_A Adenylate kinase; ATP-b 90.1 0.18 6E-06 46.6 3.5 23 91-113 2-24 (223)
448 1m7g_A Adenylylsulfate kinase; 90.1 0.22 7.5E-06 45.4 4.1 24 89-112 25-48 (211)
449 3euj_A Chromosome partition pr 90.1 0.15 5.1E-06 52.9 3.2 24 90-113 30-53 (483)
450 3nwj_A ATSK2; P loop, shikimat 90.0 0.15 5.1E-06 48.2 2.9 25 90-114 49-73 (250)
451 2grj_A Dephospho-COA kinase; T 90.0 0.21 7.2E-06 45.1 3.8 26 87-112 10-35 (192)
452 3te6_A Regulatory protein SIR3 90.0 1.6 5.6E-05 42.5 10.4 28 86-113 42-69 (318)
453 1cr0_A DNA primase/helicase; R 90.0 0.16 5.6E-06 48.9 3.3 24 90-113 36-59 (296)
454 2p65_A Hypothetical protein PF 89.9 0.15 5.2E-06 44.7 2.8 26 88-113 42-67 (187)
455 4b4t_K 26S protease regulatory 89.8 1.9 6.3E-05 44.0 11.0 29 86-114 203-231 (428)
456 1iy2_A ATP-dependent metallopr 89.8 0.17 5.8E-06 48.3 3.2 25 89-113 73-97 (278)
457 1in4_A RUVB, holliday junction 89.7 0.17 5.9E-06 49.9 3.3 26 89-114 51-76 (334)
458 1lv7_A FTSH; alpha/beta domain 89.7 0.22 7.4E-06 46.9 3.8 25 89-113 45-69 (257)
459 3qf7_A RAD50; ABC-ATPase, ATPa 89.6 0.17 5.9E-06 50.6 3.2 21 92-112 26-46 (365)
460 2cvh_A DNA repair and recombin 89.6 0.18 6.2E-06 45.9 3.1 22 90-111 21-42 (220)
461 3r20_A Cytidylate kinase; stru 89.6 0.2 7E-06 46.7 3.4 26 89-114 9-34 (233)
462 2w58_A DNAI, primosome compone 89.6 0.21 7E-06 45.0 3.4 24 90-113 55-78 (202)
463 1yqt_A RNAse L inhibitor; ATP- 89.6 0.17 5.7E-06 53.5 3.2 24 90-113 48-71 (538)
464 2dpy_A FLII, flagellum-specifi 89.3 0.21 7.1E-06 51.3 3.5 28 86-113 154-181 (438)
465 4eaq_A DTMP kinase, thymidylat 89.2 0.28 9.7E-06 45.5 4.1 27 88-114 25-51 (229)
466 1n0w_A DNA repair protein RAD5 89.2 0.2 7E-06 46.3 3.2 23 90-112 25-47 (243)
467 3zq6_A Putative arsenical pump 89.2 1.8 6.1E-05 42.3 10.2 41 177-217 223-264 (324)
468 3b60_A Lipid A export ATP-bind 89.1 0.17 5.8E-06 54.1 2.8 25 89-113 369-393 (582)
469 3b5x_A Lipid A export ATP-bind 89.0 0.18 6.3E-06 53.8 3.0 25 89-113 369-393 (582)
470 3pvs_A Replication-associated 88.9 1.2 4.2E-05 45.7 9.1 26 88-113 49-74 (447)
471 3u61_B DNA polymerase accessor 88.7 3.4 0.00012 39.9 11.8 22 92-113 51-72 (324)
472 3ozx_A RNAse L inhibitor; ATP 88.7 0.17 5.8E-06 53.4 2.4 24 90-113 26-49 (538)
473 3j16_B RLI1P; ribosome recycli 88.7 0.2 6.7E-06 53.7 2.9 24 90-113 104-127 (608)
474 2zr9_A Protein RECA, recombina 88.7 0.31 1.1E-05 48.5 4.2 24 89-112 61-84 (349)
475 3io5_A Recombination and repai 88.5 2.3 7.7E-05 41.5 10.0 22 91-112 30-51 (333)
476 1q3t_A Cytidylate kinase; nucl 88.4 0.3 1E-05 45.4 3.7 27 88-114 15-41 (236)
477 1svm_A Large T antigen; AAA+ f 88.4 0.38 1.3E-05 48.3 4.7 26 87-112 167-192 (377)
478 3fgn_A Dethiobiotin synthetase 88.2 3.4 0.00012 38.8 10.9 65 151-215 126-197 (251)
479 1zcb_A G alpha I/13; GTP-bindi 88.1 0.28 9.7E-06 49.0 3.5 23 87-109 31-53 (362)
480 3ake_A Cytidylate kinase; CMP 88.0 0.3 1E-05 44.0 3.3 24 91-114 4-27 (208)
481 2axn_A 6-phosphofructo-2-kinas 87.9 1.1 3.9E-05 46.9 8.1 38 177-214 118-155 (520)
482 1nlf_A Regulatory protein REPA 87.9 0.28 9.7E-06 46.8 3.2 23 90-112 31-53 (279)
483 2yl4_A ATP-binding cassette SU 87.9 0.17 5.9E-06 54.2 1.9 24 89-112 370-393 (595)
484 1yqt_A RNAse L inhibitor; ATP- 87.9 0.26 8.8E-06 52.1 3.2 23 91-113 314-336 (538)
485 3qf4_B Uncharacterized ABC tra 87.7 0.19 6.4E-06 53.9 2.0 25 89-113 381-405 (598)
486 1ltq_A Polynucleotide kinase; 87.6 0.33 1.1E-05 46.8 3.5 23 90-112 3-25 (301)
487 3ozx_A RNAse L inhibitor; ATP 87.6 0.22 7.5E-06 52.6 2.4 23 91-113 296-318 (538)
488 3bk7_A ABC transporter ATP-bin 87.5 0.23 8E-06 53.2 2.7 24 90-113 118-141 (607)
489 2qz4_A Paraplegin; AAA+, SPG7, 87.5 0.37 1.2E-05 45.2 3.8 26 88-113 38-63 (262)
490 1qhl_A Protein (cell division 87.5 0.063 2.2E-06 50.0 -1.6 23 92-114 30-52 (227)
491 4b4t_I 26S protease regulatory 87.5 3.7 0.00013 41.7 11.3 29 86-114 213-241 (437)
492 3h4m_A Proteasome-activating n 87.3 0.38 1.3E-05 45.8 3.8 27 87-113 49-75 (285)
493 2qmh_A HPR kinase/phosphorylas 87.3 0.36 1.2E-05 43.8 3.3 25 90-114 35-59 (205)
494 3qks_A DNA double-strand break 87.2 0.34 1.1E-05 44.1 3.2 23 91-113 25-47 (203)
495 3bk7_A ABC transporter ATP-bin 87.2 0.3 1E-05 52.4 3.2 23 91-113 384-406 (607)
496 1r6b_X CLPA protein; AAA+, N-t 87.1 2.6 8.9E-05 46.2 10.9 25 89-113 488-512 (758)
497 1ojl_A Transcriptional regulat 87.1 1 3.5E-05 43.6 6.8 25 89-113 25-49 (304)
498 2ga8_A Hypothetical 39.9 kDa p 87.0 0.47 1.6E-05 47.1 4.3 27 86-112 21-47 (359)
499 4a82_A Cystic fibrosis transme 87.0 0.16 5.6E-06 54.1 1.0 25 89-113 367-391 (578)
500 1njg_A DNA polymerase III subu 87.0 0.49 1.7E-05 43.0 4.3 24 90-113 46-69 (250)
No 1
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.3e-74 Score=618.97 Aligned_cols=394 Identities=21% Similarity=0.324 Sum_probs=335.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee------eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTP 160 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~------~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtP 160 (512)
.++|||+|+||.|+|||||+++|++.++.+...+.+. ++++|++++|++||+||.++...+.|++++|||||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 3689999999999999999999999999877655443 5799999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc----
Q 010392 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN---- 236 (512)
Q Consensus 161 G~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~---- 236 (512)
||.||..++.++++.+|++|+||||.+|++.||+.+|+.+.++++|+++|+||||+..+++..+++++++.|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988763100
Q ss_pred ----------------------CC-----------------c----------------------------------cccc
Q 010392 237 ----------------------AT-----------------D----------------------------------EQCD 243 (512)
Q Consensus 237 ----------------------~~-----------------~----------------------------------~~~~ 243 (512)
.. + ...-
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~ 268 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGEL 268 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSE
T ss_pred eeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCc
Confidence 00 0 0012
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC---------cccccceeeeEEEeee---CCCcEEEEEEEe
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI---------EKDGALQMLATNLEYD---EHKGRIAIGRLH 311 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~---------~~~~p~~~~V~~~~~~---~~~G~v~~grV~ 311 (512)
+||+++||++|. |+++||+++.+++|+|.. +.+.||.++|||+..+ ++.|+++|+||+
T Consensus 269 ~PV~~gSA~~~~----------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~ 338 (548)
T 3vqt_A 269 TPVFFGSAINNF----------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRIC 338 (548)
T ss_dssp EEEEECBGGGTB----------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEE
T ss_pred ceeeecccccCc----------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEe
Confidence 689999999999 999999999999999964 2367999999999877 899999999999
Q ss_pred ecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCCeE
Q 010392 312 AGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTV 391 (512)
Q Consensus 312 sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~ 391 (512)
||+|+.|+.|++...++++ ||.+++.++|.+++++++|.|||||+|.|++++.+|||||+...+.++++++++.|++
T Consensus 339 sG~l~~g~~v~~~~~~~~~---rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~~~i~~~~P~~ 415 (548)
T 3vqt_A 339 SGTFTRGMRLKHHRTGKDV---TVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEH 415 (548)
T ss_dssp ESCEETTCEEEETTTTEEE---ECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCBCCCEEECCSE
T ss_pred cceecCCCEEEeecccccc---ccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccccCCCCCCCCcc
Confidence 9999999999999999887 9999999999999999999999999999999999999999988888899999999999
Q ss_pred EEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEE-----
Q 010392 392 KMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKN----- 466 (512)
Q Consensus 392 ~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~----- 466 (512)
+++++|++ +.+ .+|+.++|.+++++|| +++.++++|+|++|+|||||||||+++||+|+|||++.
T Consensus 416 ~~av~p~~----~~d-----~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v~ 485 (548)
T 3vqt_A 416 FRRVRLKN----PLK-----AKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVS 485 (548)
T ss_dssp EEEEEESC----GGG-----HHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEEECS
T ss_pred eeeeeeCC----chh-----HHHHHHHHHHhhhcCc-eeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEEeecc
Confidence 99999976 455 6899999999999998 56778899999999999999999999999999999965
Q ss_pred eeceeEEEEeeccc----chhhhhhcCCCCc-cceEEEEeeccc
Q 010392 467 IWGLWLNFLAKDAG----RCLICRELGRKEQ-HSLSIKFQPVAF 505 (512)
Q Consensus 467 ~~~~~v~~~e~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~ 505 (512)
++.|+|+||||+.. +....+|+|+++| +.|++ .|+++
T Consensus 486 ~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L--~~~~~ 527 (548)
T 3vqt_A 486 THTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYL--APNPW 527 (548)
T ss_dssp CCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEE--ESSHH
T ss_pred ccCceEEecCCccchhhhhhhhhheeeecCCCCEEEE--ecCHH
Confidence 57899999999886 4458899999999 66766 34443
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.1e-72 Score=623.80 Aligned_cols=397 Identities=26% Similarity=0.372 Sum_probs=338.2
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEEC-------CeeEEE
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYN-------DTKINI 156 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~-------~~~i~l 156 (512)
.+++|||+|+||.+||||||+++|+..++.+...+.+. .+++|++++|++||+||.++...+.|+ ++.|||
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 36799999999999999999999999887665544443 679999999999999999999999996 579999
Q ss_pred EeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 157 IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 157 iDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
||||||.||..++.++++.+|++|+|||+.+|++.||+.+|+.+.+.++|.++|+||+|+..+++...++++.+.+....
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~ 169 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTP 169 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCE
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888876553100
Q ss_pred --------CC-----------------------------------------------------c----------------
Q 010392 237 --------AT-----------------------------------------------------D---------------- 239 (512)
Q Consensus 237 --------~~-----------------------------------------------------~---------------- 239 (512)
.. +
T Consensus 170 ~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~ 249 (709)
T 4fn5_A 170 VPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEA 249 (709)
T ss_dssp EESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHH
T ss_pred eeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHH
Confidence 00 0
Q ss_pred -----------cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC--------------------Cccccc
Q 010392 240 -----------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR--------------------IEKDGA 288 (512)
Q Consensus 240 -----------~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~--------------------~~~~~p 288 (512)
...-+|++++||+++. |+..||+++++++|+|. ++.+.|
T Consensus 250 ~~~~~l~~~~~~~~~~pv~~gsa~~~~----------gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~p 319 (709)
T 4fn5_A 250 EIKEGLRLRTLACEIVPAVCGSSFKNK----------GVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEP 319 (709)
T ss_dssp HHHHHHHHHHHTTSCEEEEECBTTTTB----------THHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSC
T ss_pred HHHHHHHHhhhhceeeeeeeeecccCC----------chHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCc
Confidence 0012588999999998 99999999999999994 456789
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcccc
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~ 368 (512)
|.++|||+..+++.|+++++|||||+|++||+|++...++.+ +|.+|+.++|.+++++++|.|||||+|.|++++.+
T Consensus 320 l~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~ 396 (709)
T 4fn5_A 320 FSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKE---RVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTT 396 (709)
T ss_dssp CEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCC---BCCCEECCCSSCCCEESEECTTCEEEECSCSSCCT
T ss_pred ceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEE---eecceeEeecceeeEeeeecCCCeeeecCCCcCcc
Confidence 999999999999999999999999999999999999988877 89999999999999999999999999999999999
Q ss_pred CCeEecCCCCCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHH
Q 010392 369 GETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTL 448 (512)
Q Consensus 369 Gdtl~~~~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gel 448 (512)
||||++.+.+..++++.+++|+++++|+|.+ +.| .+||.++|.||+++||+|+++.+++|+|++|+|||||
T Consensus 397 gdTl~~~~~~~~~~~~~~~~Pvv~vavep~~----~~d-----~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GEL 467 (709)
T 4fn5_A 397 GDTLCSIEKPIILERMDFPEPVISVAVEPKT----KAD-----QEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGEL 467 (709)
T ss_dssp TCEEECSSSCCBCC----CCCSEEEEECBSS----TTT-----HHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHH
T ss_pred CCEecCCCccccCCCCCCCCcceEEEEecCC----HHH-----hhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHH
Confidence 9999998888889999999999999998876 566 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHchhcCceEEeeceeEEEEeeccc-----chhhhhhcCCCCc-cceEEEEeecc
Q 010392 449 HITILIENILPLWRYQKNIWGLWLNFLAKDAG-----RCLICRELGRKEQ-HSLSIKFQPVA 504 (512)
Q Consensus 449 hl~i~~~~L~~~y~v~~~~~~~~v~~~e~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~ 504 (512)
||||+++||+++||+++.+++|+|+||||+.. +..+.||+|+++| +.+|+.++|..
T Consensus 468 HLei~l~rLr~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 529 (709)
T 4fn5_A 468 HLDIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAAD 529 (709)
T ss_dssp HHHHHHHHHHTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeecc
Confidence 99999999999999999999999999999865 3348899999999 89999999973
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=2.2e-69 Score=594.84 Aligned_cols=396 Identities=26% Similarity=0.370 Sum_probs=355.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECC-------eeEEE
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYND-------TKINI 156 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~-------~~i~l 156 (512)
.++++||+|+||.|+|||||+++|+...+.....+.+. .+++|+++.|+++|+|+......+.|++ +.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 45789999999999999999999998766544433222 5789999999999999999999999987 89999
Q ss_pred EeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 157 IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 157 iDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
||||||.+|..++..+++.+|++|+|+|+++++..++..+|..+...++|+++|+||+|+..+++.++++++++.+....
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~ 166 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANP 166 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998887777777766543100
Q ss_pred --------------------------C-C-c-------------------------------------------------
Q 010392 237 --------------------------A-T-D------------------------------------------------- 239 (512)
Q Consensus 237 --------------------------~-~-~------------------------------------------------- 239 (512)
. . .
T Consensus 167 ~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~ 246 (704)
T 2rdo_7 167 VPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEA 246 (704)
T ss_pred eeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHH
Confidence 0 0 0
Q ss_pred -----------cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC--------------------ccccc
Q 010392 240 -----------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI--------------------EKDGA 288 (512)
Q Consensus 240 -----------~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~p 288 (512)
...-+|++++||++|. |++.||+.|++++|+|.. +.+.|
T Consensus 247 ~l~~~l~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p 316 (704)
T 2rdo_7 247 EIKGALRQRVLNNEIILVTCGSAFKNK----------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEP 316 (704)
T ss_pred HHHHHHHHHHHhCCeeEEEEeecccCc----------cHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCc
Confidence 0012689999999998 999999999999999954 25789
Q ss_pred ceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcccc
Q 010392 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (512)
Q Consensus 289 ~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~ 368 (512)
|.++|||++.|++.|+++++||+||+|+.||.|++.+.++.+ +|++|+.++|.+++++++|.|||||+|.|++++++
T Consensus 317 ~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~ 393 (704)
T 2rdo_7 317 FSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARE---RFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTT 393 (704)
T ss_pred eEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEE---EeceEEEEeCCCceEcceeCCCCEEEEeCcccCcc
Confidence 999999999999999999999999999999999999988777 99999999999999999999999999999999999
Q ss_pred CCeEecCCCCCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHH
Q 010392 369 GETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTL 448 (512)
Q Consensus 369 Gdtl~~~~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gel 448 (512)
||||++.+.+..+++++++.|+++++|+|++ +.| .+||.++|.||.+|||+|+++++++|+|++|+|||||
T Consensus 394 GdTl~~~~~~~~l~~~~~~~Pv~~~ai~p~~----~~d-----~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~Gel 464 (704)
T 2rdo_7 394 GDTLCDPDAPIILERMEFPEPVISIAVEPKT----KAD-----QEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGEL 464 (704)
T ss_pred CCEEeCCCcccccCCCCCCCceEEEEEEECC----hHH-----HHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHH
Confidence 9999998877889999999999999999987 455 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHchhcCceEEeeceeEEEEeecccc-----hhhhhhcCCCCc-cceEEEEeec
Q 010392 449 HITILIENILPLWRYQKNIWGLWLNFLAKDAGR-----CLICRELGRKEQ-HSLSIKFQPV 503 (512)
Q Consensus 449 hl~i~~~~L~~~y~v~~~~~~~~v~~~e~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~ 503 (512)
||||+++||+++|||++.+++|+|+||||+.+. ..+.+|+||++| ++++|+++|.
T Consensus 465 hLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl 525 (704)
T 2rdo_7 465 HLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPL 525 (704)
T ss_pred HHHHHHHHHHHHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEEC
Confidence 999999999999999999999999999998643 358899999999 7999999998
No 4
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=3.4e-73 Score=619.85 Aligned_cols=394 Identities=23% Similarity=0.312 Sum_probs=358.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
++|||+|+||.|+|||||+++|++.++.+...+.+. .+++|++++|++||+||.++...+.|++++|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 479999999999999999999999999888776654 679999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc---------
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN--------- 236 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~--------- 236 (512)
..++.++++.+|++|+||||.+|++.||+.+|+.+.++++|.++|+||+|+..+++...++++++.+....
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~ 160 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELY 160 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEee
Confidence 99999999999999999999999999999999999999999999999999999998888887776542100
Q ss_pred ---------------------------------CCc------------cccccceeeeccccCccCCCCCCcCCCchhhH
Q 010392 237 ---------------------------------ATD------------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLF 271 (512)
Q Consensus 237 ---------------------------------~~~------------~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll 271 (512)
... ...-+|++++||++|. |+++||
T Consensus 161 ~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LL 230 (638)
T 3j25_A 161 PNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI----------GIDNLI 230 (638)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC----------SHHHHH
T ss_pred ccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC----------CchhHh
Confidence 000 0012689999999999 999999
Q ss_pred HHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecce
Q 010392 272 ESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEI 351 (512)
Q Consensus 272 ~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~ 351 (512)
+.+.+++|+|....+.||.++|||+..|++.|+++++||+||+|+.||.|++...++ + +|.+++.++|.+++++++
T Consensus 231 d~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~-~---~v~~l~~~~g~~~~~v~~ 306 (638)
T 3j25_A 231 EVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEK-I---KVTEMYTSINGELCKIDR 306 (638)
T ss_dssp HHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCC-S---SBCCCCSSCCCCBSCCCT
T ss_pred hhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcc-e---eEEeeecccccccccccc
Confidence 999999999998888999999999999999999999999999999999998876553 3 899999999999999999
Q ss_pred ecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEE
Q 010392 352 VAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRV 431 (512)
Q Consensus 352 a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v 431 (512)
|.|||||+|.+ ..+.+|+|+++......++.+.+|.|+++++++|.+ +.| .+||.++|.+|++|||+|++
T Consensus 307 a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv~~~aiep~~----~~d-----~~kL~~aL~kL~~eDPsl~v 376 (638)
T 3j25_A 307 AYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSK----PEQ-----REMLLDALLEISDSDPLLRY 376 (638)
T ss_dssp TBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCCCCCEEECCS----HHH-----HHHHHHHHHHHHHTCTTCCC
T ss_pred cccceEEEEec-cccccCceecCCCCcccccCccCCCccceeeeccCC----hHH-----HHHHHHHHHHHhhcCCeeEE
Confidence 99999999987 568889999988777778889999999999999876 455 78999999999999999999
Q ss_pred EECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEeecccc--hhhhhhcCCCCc-cceEEEEeeccc
Q 010392 432 ADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLAKDAGR--CLICRELGRKEQ-HSLSIKFQPVAF 505 (512)
Q Consensus 432 ~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~ 505 (512)
+.+++++|++|+|||||||||+++||+++||+++.+++|+|+||||+... ....+|+|+++| ++++|+++|.+-
T Consensus 377 ~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~ 453 (638)
T 3j25_A 377 YVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPL 453 (638)
T ss_dssp CCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCCS
T ss_pred EecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccceEEEEEecCCCCceEEEEEEEecccC
Confidence 99999999999999999999999999999999999999999999998864 347789999999 899999999876
No 5
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.5e-69 Score=594.03 Aligned_cols=399 Identities=26% Similarity=0.416 Sum_probs=337.2
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccce--eeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV--KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~--~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~ 162 (512)
..++.++|+|+|++|+|||||+++|++..+.....+.+ ..+++|+.+.|+++|+|+......+.|++..++|||||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 35678999999999999999999999876554333222 2467899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc------
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN------ 236 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~------ 236 (512)
.+|..++..+++.+|++|+|+|+.++...++..+|..+...++|+++|+||+|+..++....++++.+.+....
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ip 165 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLP 165 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEE
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEee
Confidence 99999999999999999999999999999999999999999999999999999988776667777666542100
Q ss_pred --------------------CC-c-c------------------------------------------------------
Q 010392 237 --------------------AT-D-E------------------------------------------------------ 240 (512)
Q Consensus 237 --------------------~~-~-~------------------------------------------------------ 240 (512)
.. . .
T Consensus 166 isa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~ 245 (693)
T 2xex_A 166 IGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIR 245 (693)
T ss_dssp ECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHH
Confidence 00 0 0
Q ss_pred -----ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC--------------------cccccceeeeEE
Q 010392 241 -----QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI--------------------EKDGALQMLATN 295 (512)
Q Consensus 241 -----~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~p~~~~V~~ 295 (512)
..-+|++++||++|. |++.||++|.+++|+|.. +.+.||.++|||
T Consensus 246 ~~~~~~~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK 315 (693)
T 2xex_A 246 QATTNVEFYPVLCGTAFKNK----------GVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFK 315 (693)
T ss_dssp HHHHTTSCEEEEECBTTTTB----------SHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEE
T ss_pred HHHHhCCeeeEEEeecccCc----------CHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEE
Confidence 011689999999998 999999999999999964 257899999999
Q ss_pred EeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecC
Q 010392 296 LEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADK 375 (512)
Q Consensus 296 ~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~ 375 (512)
+..|++.|+++++||+||+|+.||.|++...++.+ +|++|+.++|.+++++++|.|||||+|.|++++.+||||++.
T Consensus 316 ~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~ 392 (693)
T 2xex_A 316 VMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRE---RVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGE 392 (693)
T ss_dssp EEEETTTEEEEEEEEEESEEETTEEEEETTTTEEE---EECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEET
T ss_pred eeecCCCceEEEEEEEeeeEecCCEEEecCCCceE---EeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecC
Confidence 99999999999999999999999999999888776 999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHH
Q 010392 376 VSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIE 455 (512)
Q Consensus 376 ~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~ 455 (512)
+.+.++++++++.|+++++|+|++ +.| .+||.++|.+|.+|||+|+++++++|+|++|+|||||||||+++
T Consensus 393 ~~~~~~~~~~~~~Pv~~~av~p~~----~~d-----~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~ 463 (693)
T 2xex_A 393 KNDIILESMEFPEPVIHLSVEPKS----KAD-----QDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVD 463 (693)
T ss_dssp TCCEECCCCSSCSCSEEEEEEESS----HHH-----HHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHH
T ss_pred CCccccCCcCCCCceEEEEEEeCC----chh-----HHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHH
Confidence 877889999999999999999987 455 78999999999999999999999999999999999999999999
Q ss_pred HHchhcCceEEeeceeEEEEeeccc----chhhhhhcCCCCc-cceEEEEeeccc
Q 010392 456 NILPLWRYQKNIWGLWLNFLAKDAG----RCLICRELGRKEQ-HSLSIKFQPVAF 505 (512)
Q Consensus 456 ~L~~~y~v~~~~~~~~v~~~e~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~ 505 (512)
||+++||+++.+++|+|+||||+.+ ...+.+|+||++| ++++|.++|.+.
T Consensus 464 rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~ 518 (693)
T 2xex_A 464 RMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNET 518 (693)
T ss_dssp HHHHHSCCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCT
T ss_pred HHHHHhCceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCC
Confidence 9999999999999999999999886 3448899999999 799999999865
No 6
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=2.3e-69 Score=594.12 Aligned_cols=398 Identities=29% Similarity=0.411 Sum_probs=294.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee--eeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~--~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
.++.+||+|+||+|+|||||+++|+...+.....+.+. .+++|.++.|+++|+|+......+.|++..++|||||||.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 45689999999999999999999998766544333222 4788999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh--------
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL-------- 235 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~-------- 235 (512)
+|..++..+++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+..+++...++++.+.+...
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi 168 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPI 168 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEE
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceeccc
Confidence 999999999999999999999999999999999999999999999999999998877666666665543210
Q ss_pred ------------------------cC----------------------------Ccc-----------------------
Q 010392 236 ------------------------NA----------------------------TDE----------------------- 240 (512)
Q Consensus 236 ------------------------~~----------------------------~~~----------------------- 240 (512)
+. .++
T Consensus 169 ~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~ 248 (691)
T 1dar_A 169 GREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRK 248 (691)
T ss_dssp SCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 00 000
Q ss_pred ----ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCC------------------cccccceeeeEEEee
Q 010392 241 ----QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI------------------EKDGALQMLATNLEY 298 (512)
Q Consensus 241 ----~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~------------------~~~~p~~~~V~~~~~ 298 (512)
..-+|++++||++|. |+++||+.|.+++|+|.. +.+.||.++|||+..
T Consensus 249 ~~~~~~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~ 318 (691)
T 1dar_A 249 GTIDLKITPVFLGSALKNK----------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMA 318 (691)
T ss_dssp HHHTTSCEEEEECBGGGTB----------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEE
T ss_pred HHHhCcEeEEEEeecccCc----------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEE
Confidence 012689999999998 999999999999999964 357899999999999
Q ss_pred eCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCC
Q 010392 299 DEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSG 378 (512)
Q Consensus 299 ~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~ 378 (512)
|++.|+++++||+||+|+.||.|++...++.+ +|++|+.++|.+++++++|.|||||+|.|++++.+||||++.+.+
T Consensus 319 d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 319 DPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKE---RVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAP 395 (691)
T ss_dssp ETTTEEEEEEEEEESEEESSCEEEETTTTEEE---ECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCC
T ss_pred cCCCCcEEEEEEeeeeEecCCEEEecCCCcEE---EEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCc
Confidence 99999999999999999999999999888776 999999999999999999999999999999999999999998877
Q ss_pred -CCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHH
Q 010392 379 -KPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENI 457 (512)
Q Consensus 379 -~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L 457 (512)
.++++++++.|+++++|+|++ +.| .+||.++|.||.+|||+|+++++++|+|++|+|||||||||+++||
T Consensus 396 ~~~l~~~~~~~P~~~~ai~p~~----~~d-----~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL 466 (691)
T 1dar_A 396 RVILESIEVPEPVIDVAIEPKT----KAD-----QEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRL 466 (691)
T ss_dssp CCBCC-----------------------------------------CCCCSCEEEC-----CEEEEESCCC---------
T ss_pred ccccCCCCCCCceEEEEEEECC----chh-----HHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHH
Confidence 789999999999999999887 445 6899999999999999999999999999999999999999999999
Q ss_pred chhcCceEEeeceeEEEEeeccc----chhhhhhcCCCCc-cceEEEEeeccc
Q 010392 458 LPLWRYQKNIWGLWLNFLAKDAG----RCLICRELGRKEQ-HSLSIKFQPVAF 505 (512)
Q Consensus 458 ~~~y~v~~~~~~~~v~~~e~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~ 505 (512)
+++||+++.+++|+|+||||+.+ ...+.+|+||++| ++++|+++|.+.
T Consensus 467 ~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~ 519 (691)
T 1dar_A 467 KREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPR 519 (691)
T ss_dssp CCCEEEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCT
T ss_pred HHhhCceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCC
Confidence 99999999999999999999886 3448899999999 799999999865
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=3.7e-65 Score=558.96 Aligned_cols=393 Identities=20% Similarity=0.291 Sum_probs=350.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccce--eeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV--KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~--~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~ 163 (512)
....++|+|+||+|+|||||+++|++..+.....+.+ ...++|..+.|+++|+|+......+.+.+..++|||||||.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3467899999999999999999999877654444433 24678889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh--------
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL-------- 235 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~-------- 235 (512)
+|..++..+++.+|++++|+|+.+++..++..+|..+...++|+++|+||+|+. .+..+..+++.+.+...
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~Pi~ 164 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDLPLY 164 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEEEEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEeeec
Confidence 999999999999999999999999999999999999999999999999999998 77677777766654300
Q ss_pred ------------------------------------------------cCCcc---------------------------
Q 010392 236 ------------------------------------------------NATDE--------------------------- 240 (512)
Q Consensus 236 ------------------------------------------------~~~~~--------------------------- 240 (512)
...++
T Consensus 165 ~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~ 244 (665)
T 2dy1_A 165 EGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRR 244 (665)
T ss_dssp ETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred CCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 00000
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCc-ccccceeeeEEEeeeCCCcEEEEEEEeecccCCCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE-KDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGM 319 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~-~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~ 319 (512)
...+|++++||++|. |+++||++|.+++|+|... .+.||.++|||+..+++.|+++++||+||+|+.||
T Consensus 245 ~~~~pv~~~SA~~~~----------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~ 314 (665)
T 2dy1_A 245 GLLYPVALASGEREI----------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGD 314 (665)
T ss_dssp TSCEEEEECBTTTTB----------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTE
T ss_pred CCeeEEEEeecccCc----------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCC
Confidence 011689999999999 9999999999999999754 68899999999999999999999999999999999
Q ss_pred EEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCC--CCCCCCCCCCCeEEEEEEe
Q 010392 320 EVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSG--KPLPSIKVEEPTVKMSFSI 397 (512)
Q Consensus 320 ~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~--~~l~~~~~~~P~~~~av~~ 397 (512)
.|++.+ +.. +|++|+.++|.+++++++|.|||||+|.|++++.+||||++.+.+ .++++++++.|+++++++|
T Consensus 315 ~v~~~~--~~~---~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~~~~~i~p 389 (665)
T 2dy1_A 315 SLQSEA--GQV---RLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHP 389 (665)
T ss_dssp EEBCTT--SCE---EESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCCCCCCEEEEEEE
T ss_pred EEEcCC--CeE---EEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCCCCceEEEEEEE
Confidence 999887 444 999999999999999999999999999999999999999998776 6899999999999999999
Q ss_pred cCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEee
Q 010392 398 NTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLAK 477 (512)
Q Consensus 398 ~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e~ 477 (512)
++ ++| .+||.++|.||.+|||+|+++++++|+|++|+|||||||||+++||+ +||+++.+++|+|+||||
T Consensus 390 ~~----~~d-----~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~yrEt 459 (665)
T 2dy1_A 390 KG----RTD-----EARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYRET 459 (665)
T ss_dssp SS----HHH-----HHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCCEEE
T ss_pred CC----hhh-----HHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEEEEe
Confidence 86 455 78999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccc----chhhhhhcCCCCc-cceEEEEeecc
Q 010392 478 DAG----RCLICRELGRKEQ-HSLSIKFQPVA 504 (512)
Q Consensus 478 ~~~----~~~~~~~~~~~~~-~~~~~~~~~~~ 504 (512)
+.+ ...+.||+||++| ++++|+++|.+
T Consensus 460 i~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~ 491 (665)
T 2dy1_A 460 IKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS 491 (665)
T ss_dssp ESSCEEEEEEEEEEETTEEEEEEEEEEEEECS
T ss_pred eccceeeeeecccccCCCcceEEEEEEEEECC
Confidence 875 3448999999999 89999999975
No 8
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=8.5e-64 Score=532.58 Aligned_cols=370 Identities=21% Similarity=0.288 Sum_probs=326.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccce------eeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV------KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTP 160 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~------~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtP 160 (512)
.+.+||+|+||+|+|||||+++|++..+.+...+.+ ...++|..+.|+++|+|+......+.|++..++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 357999999999999999999999877765443332 24577889999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC---
Q 010392 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA--- 237 (512)
Q Consensus 161 G~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~--- 237 (512)
||.+|...+..+++.+|++|+|+|+.+++..++..+|..+...++|+++|+||+|+..++..+.++++.+.+.....
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~ 170 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVT 170 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999877766667766665421000
Q ss_pred -----------------------C---------------------------------------------------ccccc
Q 010392 238 -----------------------T---------------------------------------------------DEQCD 243 (512)
Q Consensus 238 -----------------------~---------------------------------------------------~~~~~ 243 (512)
. .....
T Consensus 171 ~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 250 (528)
T 3tr5_A 171 WPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGEL 250 (528)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSE
T ss_pred cccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCce
Confidence 0 00012
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCc---------ccccceeeeEEEee--eC-CCcEEEEEEEe
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE---------KDGALQMLATNLEY--DE-HKGRIAIGRLH 311 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~~--~~-~~G~v~~grV~ 311 (512)
+||+++||++|. |+++||+.|.+++|+|... .+.||.++|||+.. || ++|+++++||+
T Consensus 251 ~PV~~gSA~~~~----------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~ 320 (528)
T 3tr5_A 251 TPIFFGSAINNF----------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIA 320 (528)
T ss_dssp EEEEECBGGGTB----------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEE
T ss_pred eEEEeccccCCc----------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEe
Confidence 489999999999 9999999999999999743 25899999999985 88 99999999999
Q ss_pred ecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCCeE
Q 010392 312 AGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTV 391 (512)
Q Consensus 312 sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~ 391 (512)
||+|++||.|++.+.++.+ +|.+++.++|.+++++++|.|||||++.+++++++|||||+. .+..+++++++.|++
T Consensus 321 sG~l~~g~~v~~~~~~~~~---rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~~~~~~~~~P~~ 396 (528)
T 3tr5_A 321 SGQYQKGMKAYHVRLKKEI---QINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFKFTGIPNFASEL 396 (528)
T ss_dssp ESCEETTEEEEETTTTEEE---EESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCCBCCCEEECCSE
T ss_pred cCeEcCCCEEEecCCCceE---EEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcccCCCCCCCCCE
Confidence 9999999999999999887 999999999999999999999999999999999999999984 446678888889999
Q ss_pred EEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeecee
Q 010392 392 KMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGLW 471 (512)
Q Consensus 392 ~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~ 471 (512)
++++.|.+ +.+ .+||.++|.+|++|||+ ++.++++|+|++|+|||+|||||+++||+++|||+|.+++|+
T Consensus 397 ~~~i~~~~----~~d-----~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~ 466 (528)
T 3tr5_A 397 FRLVRLKD----PLK-----QKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVN 466 (528)
T ss_dssp EEEEEESC----GGG-----HHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCS
T ss_pred EEEEEECC----hhH-----HHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 99999865 455 78999999999999996 888999999999999999999999999999999999999999
Q ss_pred EEEEeeccc
Q 010392 472 LNFLAKDAG 480 (512)
Q Consensus 472 v~~~e~~~~ 480 (512)
|.|+++..+
T Consensus 467 v~~~~~i~~ 475 (528)
T 3tr5_A 467 VVTARWVIC 475 (528)
T ss_dssp CCEEEEEEC
T ss_pred eEEEEEecC
Confidence 999999764
No 9
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=3.8e-63 Score=528.14 Aligned_cols=371 Identities=20% Similarity=0.312 Sum_probs=301.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccce------eeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV------KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTP 160 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~------~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtP 160 (512)
.+.+||+|+||+|+|||||+++|+...+.....+.+ ...++|.++.|+++|+|+......+.+++..++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 357999999999999999999999876554333222 14578999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh-----
Q 010392 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL----- 235 (512)
Q Consensus 161 G~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~----- 235 (512)
||.+|...+..++..+|++|+|+|+.+++..++..++..+...++|+++|+||+|+..++..+.++++.+.+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~ 170 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPIT 170 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcccee
Confidence 999999999999999999999999999999999999999998999999999999998776655566655543210
Q ss_pred ---------------------------cC-----------C--------c---------------------------ccc
Q 010392 236 ---------------------------NA-----------T--------D---------------------------EQC 242 (512)
Q Consensus 236 ---------------------------~~-----------~--------~---------------------------~~~ 242 (512)
+. . . ...
T Consensus 171 ~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 250 (529)
T 2h5e_A 171 WPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGE 250 (529)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred cceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCc
Confidence 00 0 0 001
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcc---------cccceeeeEEEee---eCCCcEEEEEEE
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEK---------DGALQMLATNLEY---DEHKGRIAIGRL 310 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~---------~~p~~~~V~~~~~---~~~~G~v~~grV 310 (512)
.+||+++||++|. |+++||+.|.+++|+|.... +.||.++|||+.. +++.|+++++||
T Consensus 251 ~~Pv~~gSA~~~~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV 320 (529)
T 2h5e_A 251 ITPVFFGTALGNF----------GVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRV 320 (529)
T ss_dssp EEEEEECBTTTTB----------SHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEE
T ss_pred eeEEEeeecccCC----------CHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEE
Confidence 3589999999999 99999999999999996421 4789999999975 467999999999
Q ss_pred eecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccCCeEecCCCCCCCCCCCCCCCe
Q 010392 311 HAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPT 390 (512)
Q Consensus 311 ~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~ 390 (512)
+||+|++||.|++.+.++.+ +|++|+.++|.+++++++|.|||||+|.|++++++|||||+.+ ...+++++++.|+
T Consensus 321 ~sG~l~~g~~v~~~~~~~~~---~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~~~~~~~~P~ 396 (529)
T 2h5e_A 321 VSGKYEKGMKLRQVRTAKDV---VISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKFTGIPNFAPE 396 (529)
T ss_dssp EESCEETTCEEEETTTTEEE---ECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCBCCCEEECCS
T ss_pred ecCeEcCCCEEEEeeCCCEE---EeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-ccccCCCCCCCcc
Confidence 99999999999999998876 9999999999999999999999999999999999999999876 4678899999999
Q ss_pred EEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhcCceEEeece
Q 010392 391 VKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLWRYQKNIWGL 470 (512)
Q Consensus 391 ~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~ 470 (512)
++++|.|.+ +.+ .+||.++|.+|++||| +++.++++|+|++|+|||||||||+++||+++|||++.+++|
T Consensus 397 ~~~~v~~~~----~~d-----~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~ 466 (529)
T 2h5e_A 397 LFRRIRLKD----PLK-----QKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESV 466 (529)
T ss_dssp EEEEEEESC----C--------CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECC
T ss_pred EEEEEEECC----hHH-----HHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecC
Confidence 999999876 344 5799999999999998 899999999999999999999999999999999999999999
Q ss_pred eEEEEeecccc
Q 010392 471 WLNFLAKDAGR 481 (512)
Q Consensus 471 ~v~~~e~~~~~ 481 (512)
+|.||||+...
T Consensus 467 ~v~y~eti~~~ 477 (529)
T 2h5e_A 467 NVATARWVECA 477 (529)
T ss_dssp CCSEEEEEECS
T ss_pred ceeEEEEEcCC
Confidence 99999998653
No 10
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=5.7e-63 Score=553.62 Aligned_cols=414 Identities=25% Similarity=0.366 Sum_probs=326.0
Q ss_pred hhcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-----------
Q 010392 82 RLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN----------- 150 (512)
Q Consensus 82 ~~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~----------- 150 (512)
.+....+++||+|+||+|+|||||+++|++..+.+........+++|..+.|+++|+|+......+.|.
T Consensus 12 ~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~ 91 (842)
T 1n0u_A 12 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQ 91 (842)
T ss_dssp HHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSS
T ss_pred HhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccc
Confidence 333566789999999999999999999999876655444334678999999999999999888888776
Q ss_pred -----CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC----C-
Q 010392 151 -----DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA----R- 220 (512)
Q Consensus 151 -----~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~----~- 220 (512)
++.++|||||||.+|..++..+++.+|++|+|+|+.+++..++..+|..+...++|+++|+||+|+... +
T Consensus 92 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~ 171 (842)
T 1n0u_A 92 KTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSK 171 (842)
T ss_dssp CCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCH
T ss_pred cccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCH
Confidence 688999999999999999999999999999999999999999999999988899999999999998732 2
Q ss_pred ------chhhHhhhHHHHHHhcC---C---ccccccceeeeccccCccCC------------------------------
Q 010392 221 ------PDYVINSTFELFIELNA---T---DEQCDFQAIYASGIQGKAGL------------------------------ 258 (512)
Q Consensus 221 ------~~~~~~~~~~~~~~~~~---~---~~~~~~pvi~~Sa~~g~~~~------------------------------ 258 (512)
+...++++...+..+.. . ......++.++||++|++..
T Consensus 172 ~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~ 251 (842)
T 1n0u_A 172 EDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFN 251 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhcccccc
Confidence 23334444444432110 0 11223457788987775310
Q ss_pred C----------CCCcC-----------------------------------CC--------------------------c
Q 010392 259 S----------PDNLA-----------------------------------DD--------------------------L 267 (512)
Q Consensus 259 ~----------~~~~~-----------------------------------~g--------------------------i 267 (512)
. +.... .| +
T Consensus 252 ~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~ 331 (842)
T 1n0u_A 252 PKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAA 331 (842)
T ss_dssp TTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHH
T ss_pred CCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchH
Confidence 0 00000 01 2
Q ss_pred hhhHHHHHHhCCCCC-------------------------CcccccceeeeEEEeeeCCCcE-EEEEEEeecccCCCCEE
Q 010392 268 GPLFESIMRCIPGPR-------------------------IEKDGALQMLATNLEYDEHKGR-IAIGRLHAGVLRKGMEV 321 (512)
Q Consensus 268 ~~Ll~~i~~~lp~p~-------------------------~~~~~p~~~~V~~~~~~~~~G~-v~~grV~sG~l~~g~~v 321 (512)
+.||++|++++|+|. ++.++||.++|||+..+++.|+ ++++|||||+|+.||.|
T Consensus 332 ~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v 411 (842)
T 1n0u_A 332 DALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKV 411 (842)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEE
T ss_pred HHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEE
Confidence 789999999999995 2567899999999999999995 99999999999999999
Q ss_pred EEccC------CCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCccccC-CeEecCCCCCCCCCCCCC-CCeEEE
Q 010392 322 RVCTS------EDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIG-ETIADKVSGKPLPSIKVE-EPTVKM 393 (512)
Q Consensus 322 ~~~~~------~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~G-dtl~~~~~~~~l~~~~~~-~P~~~~ 393 (512)
++.+. ++.....||++|+.++|.+++++++|.|||||+|.|++++.+| +|||+.+.+.+++++.++ .|++++
T Consensus 412 ~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~~~~~~Pv~~~ 491 (842)
T 1n0u_A 412 RIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQV 491 (842)
T ss_dssp EEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCCCCCCSCCEEE
T ss_pred EeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccCCCCCCceEEE
Confidence 76543 2322234999999999999999999999999999999998664 699998777888999988 599999
Q ss_pred EEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeEEEEEecHHHHHHHHHHHchhc-CceEEeeceeE
Q 010392 394 SFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENILPLW-RYQKNIWGLWL 472 (512)
Q Consensus 394 av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~~l~g~Gelhl~i~~~~L~~~y-~v~~~~~~~~v 472 (512)
+|+|.+ +.| .+||.++|+||++|||+|+++++ +|+|++|+|||||||||+++||+++| ||++.+++|+|
T Consensus 492 avep~~----~~d-----~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V 561 (842)
T 1n0u_A 492 AVEVKN----AND-----LPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVV 561 (842)
T ss_dssp EEEESS----GGG-----HHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCC
T ss_pred EEEECC----HHH-----HHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcEE
Confidence 999986 566 78999999999999999999998 89999999999999999999999999 99999999999
Q ss_pred EEEeecccchh-hhhhcCCCCccceEEEEeeccc
Q 010392 473 NFLAKDAGRCL-ICRELGRKEQHSLSIKFQPVAF 505 (512)
Q Consensus 473 ~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
+||||+.+.+- .|........++++|+++|.+.
T Consensus 562 ~yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~ 595 (842)
T 1n0u_A 562 AYRETVESESSQTALSKSPNKHNRIYLKAEPIDE 595 (842)
T ss_dssp CCEEEESSCCSSCEEEECTTSSCEEEEEEEECCH
T ss_pred EEEEeeccccccceeeccCCcceEEEEEEEECcH
Confidence 99999987543 5554444455789999999863
No 11
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=8.4e-62 Score=521.14 Aligned_cols=362 Identities=30% Similarity=0.439 Sum_probs=298.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-----eeEEEEeCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-----TKINIIDTP 160 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-----~~i~liDtP 160 (512)
.++++||+++||.|+|||||+++|++..+...... ...+++|..+.|+++|+|+......+.|.. +.++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP 81 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP 81 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc-ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence 34689999999999999999999998776554332 347789999999999999999888888763 789999999
Q ss_pred CCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 161 G~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
||.+|..++.+++..+|++|+|+|+++++..++..+|..+...++|+++|+||+|+..++.++..+++.+.+ +..
T Consensus 82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~l---g~~-- 156 (600)
T 2ywe_A 82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVL---GLD-- 156 (600)
T ss_dssp CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTS---CCC--
T ss_pred CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhh---CCC--
Confidence 999999999999999999999999999999999999999999999999999999998877655555554432 221
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCE
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGME 320 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~ 320 (512)
..+++++||++|. |+.+||++|.+.+|+|..+.+.||.++|+++..+++.|+++++||++|+|++||.
T Consensus 157 --~~~vi~vSAktg~----------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~ 224 (600)
T 2ywe_A 157 --PEEAILASAKEGI----------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDK 224 (600)
T ss_dssp --GGGCEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCE
T ss_pred --cccEEEEEeecCC----------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCE
Confidence 1258999999999 9999999999999999988899999999999999999999999999999999999
Q ss_pred EEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc-c---CCccccCCeEecCCCC--CCCCCCCCCCCeEEEE
Q 010392 321 VRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC-G---IDDIQIGETIADKVSG--KPLPSIKVEEPTVKMS 394 (512)
Q Consensus 321 v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-~---l~~~~~Gdtl~~~~~~--~~l~~~~~~~P~~~~a 394 (512)
|++.+.++.+ +|++|+.+.+ ++.+++++.|||++++. | ++++++||||++.+.+ .++++++++.|+++++
T Consensus 225 I~~~~~~~~~---~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~ 300 (600)
T 2ywe_A 225 IMLMSTGKEY---EVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAG 300 (600)
T ss_dssp EEETTTTEEE---ECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCCCCCCCEEEE
T ss_pred EEeccccceE---eeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCCCCCcEEEEE
Confidence 9999998877 8888887765 58899999999999883 4 5689999999988776 5789999999999999
Q ss_pred EEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCe-----EEEEEecHHHHHHHHHHHchhcCceEEeec
Q 010392 395 FSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADT-----FIVSGRGTLHITILIENILPLWRYQKNIWG 469 (512)
Q Consensus 395 v~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e-----~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~ 469 (512)
+.|.+ ..+ .++|.++|.||.+|||+|+++. +|++ +.+++||+|||||+++||+|+||+++.++.
T Consensus 301 i~p~~----~~d-----~~~l~~aL~kL~~eD~sl~~~~--et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~ 369 (600)
T 2ywe_A 301 IYPAE----DTT-----YEELRDALEKYAINDAAIVYEP--ESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTA 369 (600)
T ss_dssp EEECT----TCC-----HHHHHHHHHHHHTTCSSCEEEE--EEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECC
T ss_pred eeccc----ccc-----HHHHHHHHHHHhhhCCEEEEEE--CCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEe
Confidence 99987 344 6899999999999999999985 4555 445559999999999999999999999999
Q ss_pred eeEEEEeeccc
Q 010392 470 LWLNFLAKDAG 480 (512)
Q Consensus 470 ~~v~~~e~~~~ 480 (512)
|+|.||||..+
T Consensus 370 P~V~yreti~~ 380 (600)
T 2ywe_A 370 PNVIYRVKKKF 380 (600)
T ss_dssp CEECEEEEETT
T ss_pred eeEEEEEEecC
Confidence 99999999873
No 12
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.9e-60 Score=511.71 Aligned_cols=360 Identities=29% Similarity=0.435 Sum_probs=293.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-----eeEEEEeCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-----TKINIIDTPG 161 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-----~~i~liDtPG 161 (512)
++++||+|+||+|+|||||+++|++..+..... ....+++|.++.|+++|+|+......+.|.. +.++||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~-~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPG 80 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPG 80 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccc-cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCC
Confidence 368999999999999999999999987765443 2357889999999999999999988888863 7899999999
Q ss_pred CCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 162 ~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
|.+|..++..+++.+|++|+|+|+++++..++..+|..+...++|+++|+||+|+..++.++..+++.+.+ +..
T Consensus 81 h~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~l---g~~--- 154 (599)
T 3cb4_D 81 HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIV---GID--- 154 (599)
T ss_dssp CGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHT---CCC---
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHh---CCC---
Confidence 99999999999999999999999999999999999999999999999999999999877666666665543 221
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEE
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEV 321 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v 321 (512)
..+++++||++|. |+++|+++|.+.+|.|..+.+.|+.++|+++..+++.|+++++||++|+|+.||.+
T Consensus 155 -~~~vi~vSAktg~----------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v 223 (599)
T 3cb4_D 155 -ATDAVRCSAKTGV----------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223 (599)
T ss_dssp -CTTCEEECTTTCT----------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred -cceEEEeecccCC----------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence 1248999999999 99999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc-c---CCccccCCeEecCCCC--CCCCCCCCCCCeEEEEE
Q 010392 322 RVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC-G---IDDIQIGETIADKVSG--KPLPSIKVEEPTVKMSF 395 (512)
Q Consensus 322 ~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-~---l~~~~~Gdtl~~~~~~--~~l~~~~~~~P~~~~av 395 (512)
.+.++++.+ +|.+|+.+.+ ..++++++.|||++++. + ++++++||||++.+.+ .+++.+.++.|++++++
T Consensus 224 ~~~~~~~~~---~v~~i~~~~~-~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~i 299 (599)
T 3cb4_D 224 KVMSTGQTY---NADRLGIFTP-KQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGL 299 (599)
T ss_dssp EETTTCCEE---ECCEEEEESS-SEEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCCCCCCCEEEEE
T ss_pred Eecccccee---EEeeeeeccC-CceECCEEcCCCeeEeeccccccccCccCCEeeecCCccccccccccCCCcceEEEE
Confidence 999998877 8888887765 48899999999999883 4 5689999999998776 67889999999999999
Q ss_pred EecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCCeE-----EEEEecHHHHHHHHHHHchhcCceEEeece
Q 010392 396 SINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTF-----IVSGRGTLHITILIENILPLWRYQKNIWGL 470 (512)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~e~-----~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~ 470 (512)
.|.+ ..+ .+++.++|.+|.++||+|+++. +++++ .+++||+|||||+++||+|+||+++.++.|
T Consensus 300 ~p~~----~~d-----~~~l~~aL~kL~~eD~sl~~~~--et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P 368 (599)
T 3cb4_D 300 FPVS----SDD-----YEAFRDALGKLSLNDASLFYEP--ESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAP 368 (599)
T ss_dssp EESS----GGG-----HHHHHHHHHHHHTTCSSCEEEE--EEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCC
T ss_pred EecC----ccC-----HHHHHHHHHHHHhhCcEEEEEe--ccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEee
Confidence 9876 334 6799999999999999999983 45554 455599999999999999999999999999
Q ss_pred eEEEEeecc
Q 010392 471 WLNFLAKDA 479 (512)
Q Consensus 471 ~v~~~e~~~ 479 (512)
+|.||||..
T Consensus 369 ~V~yreti~ 377 (599)
T 3cb4_D 369 TVVYEVETT 377 (599)
T ss_dssp EECEEEEES
T ss_pred eEEEEEEec
Confidence 999999976
No 13
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=3.6e-39 Score=337.41 Aligned_cols=282 Identities=20% Similarity=0.320 Sum_probs=231.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccc---------------eeeeeeccchhhhhcceeEEeeeeEEEEC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT---------------VKERIMDSNDLERERGITILSKNTSITYN 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~---------------~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 150 (512)
.+..+||+++||+|+|||||+++|++..+....... -..+++|..+.|+++|+|++.....+.++
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 346789999999999999999999988765543220 11568899999999999999999999999
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCc-------hhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGHA-VVVVVNKIDRPSAR-- 220 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~-------~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~-- 220 (512)
+..++|||||||.+|...+..++..+|++|||+|+.++.. .|+++++..+...++| +++|+||+|+...+
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 9999999999999999999999999999999999999876 6999999999999998 99999999996432
Q ss_pred ---chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCC-cCCCchhhHHHHHHhCCCCCCcccccceeeeEEE
Q 010392 221 ---PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296 (512)
Q Consensus 221 ---~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~-~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~ 296 (512)
++++.+++.+++..++.... ..+|++++||++|.|+.+..+ ..|.-...|..+++.+|.|....+.||++.|.++
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~-~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~ 252 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPK-KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDK 252 (439)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-CCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEEEE
Confidence 34445556666655554321 257899999999997766432 2222222233456678888888899999999998
Q ss_pred eeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC--ccccCCeE
Q 010392 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETI 372 (512)
Q Consensus 297 ~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~--~~~~Gdtl 372 (512)
+. +.|+++.|||.+|+|++||.|.+.|.+... +|++|+ .++.++++|.|||+|++ .|++ ++++||+|
T Consensus 253 ~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~---~V~~i~----~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl 323 (439)
T 3j2k_7 253 YK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNV---EVLGIL----SDDTETDFVAPGENLKIRLKGIEEEEILPGFIL 323 (439)
T ss_pred Ec--CCCeEEEEEEEeeEEecCCEEEEccCCceE---EEEEEE----ECCeEcCEecCCCcceEEEeccchhhcCCcEEe
Confidence 75 579999999999999999999999999776 899994 45679999999999995 6665 79999999
Q ss_pred ecCCC
Q 010392 373 ADKVS 377 (512)
Q Consensus 373 ~~~~~ 377 (512)
+++++
T Consensus 324 ~~~~~ 328 (439)
T 3j2k_7 324 CDPSN 328 (439)
T ss_pred cCCCC
Confidence 98765
No 14
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=1.9e-39 Score=335.76 Aligned_cols=281 Identities=27% Similarity=0.336 Sum_probs=227.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...||+++||+|+|||||+++|++.............+.+|..+.|+++|+|+......+.+++..++|||||||.+|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35789999999999999999999753211111111122468888999999999998888888889999999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--chhhHhhhHHHHHHhcCCcccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
.+..++..+|++|+|+|+.++...++++++..+...++| +++|+||+|+.... .+.+.+++.+++..++... ..+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~~~ 159 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG--EET 159 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT--TTS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc--ccC
Confidence 999999999999999999999999999999999999999 68999999997521 1233455666666554321 246
Q ss_pred ceeeeccccCccCCCCCCcCCC-chhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEE
Q 010392 245 QAIYASGIQGKAGLSPDNLADD-LGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRV 323 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~g-i~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~ 323 (512)
|++++||++|.|..++ .+..| +.+|++.|.+++|.|..+.+.||++.|++++.+++.|++++|||++|+|++||.|.+
T Consensus 160 ~~i~~SA~~g~n~~~~-~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~ 238 (397)
T 1d2e_A 160 PIIVGSALCALEQRDP-ELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEF 238 (397)
T ss_dssp CEEECCHHHHHTTCCT-TTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEE
T ss_pred cEEEeehhhcccccCC-CccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEE
Confidence 8999999998864321 22235 889999999999999888899999999999999999999999999999999999999
Q ss_pred ccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc--cC--CccccCCeEecCC
Q 010392 324 CTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI--DDIQIGETIADKV 376 (512)
Q Consensus 324 ~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--~l--~~~~~Gdtl~~~~ 376 (512)
.+.+.. ...+|++|.. +..++++|.|||+|++. ++ +++++||+|++++
T Consensus 239 ~~~~~~-~~~~V~~i~~----~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 239 LGHSKN-IRTVVTGIEM----FHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp EETTEE-EEEEEEEEEE----TTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred eCCCCC-eEEEEEEEEE----CCcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 887521 2238999843 45789999999999984 55 5899999999865
No 15
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=3e-39 Score=335.39 Aligned_cols=285 Identities=26% Similarity=0.357 Sum_probs=228.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcC-ccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD-NQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~-~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
....++|+++||+|+|||||+++|++....... ........+|..+.|+++|+|+......+.+.+..++|||||||.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 345789999999999999999999974211100 0011123578899999999999998888888889999999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--chhhHhhhHHHHHHhcCCccc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 241 (512)
|...+..++..+|++|+|+|+.++...++++++..+...++| +++|+||+|+.... .+...+++.+.+..++...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~-- 165 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG-- 165 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT--
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc--
Confidence 999999999999999999999999999999999999999999 88999999997421 1223445666665554321
Q ss_pred cccceeeeccccCccCCCC--------CCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeec
Q 010392 242 CDFQAIYASGIQGKAGLSP--------DNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAG 313 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~--------~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG 313 (512)
..+|++++||++|.|+.+. ..+..++.+|++.|.+++|.|..+.+.||+++|++++.+++.|++++|||++|
T Consensus 166 ~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G 245 (405)
T 2c78_A 166 DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERG 245 (405)
T ss_dssp TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBS
T ss_pred cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecc
Confidence 2468999999999852110 11222388999999999999988889999999999999999999999999999
Q ss_pred ccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc--cC--CccccCCeEecCC
Q 010392 314 VLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI--DDIQIGETIADKV 376 (512)
Q Consensus 314 ~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--~l--~~~~~Gdtl~~~~ 376 (512)
+|++||.|.+.|.+......+|++|.. ++.++++|.|||+|++. ++ +++++||+|++++
T Consensus 246 ~l~~gd~v~~~~~~~~~~~~~V~~i~~----~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 246 KVKVGDEVEIVGLAPETRKTVVTGVEM----HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp EEETTCEEEEESSSSSCEEEEEEEEEE----TTEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred cccCCCEEEEeCCCCCeeeEEEEEEEE----CCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 999999999999874112248999853 45789999999999984 54 6899999999865
No 16
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=1.4e-38 Score=333.07 Aligned_cols=280 Identities=22% Similarity=0.284 Sum_probs=218.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccc---------------eeeeeeccchhhhhcceeEEeeeeEEEECC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT---------------VKERIMDSNDLERERGITILSKNTSITYND 151 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~---------------~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 151 (512)
+..+||+++||+|+|||||+++|++..+....... ...+++|..++|+++|+|++.....+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45789999999999999999999987543321110 002468999999999999999999999999
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCC-cEEEEEeccCCCCCC---
Q 010392 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR--- 220 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-------~~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~--- 220 (512)
.+++|||||||.+|...+..++..+|++|+|+|+.++ ...++++++..+...++ |+++|+||+|+.+.+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999998 67799999999999887 589999999998632
Q ss_pred --chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCC---cCCCchhhHHHHHHhCCCCCCcccccceeeeEE
Q 010392 221 --PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN---LADDLGPLFESIMRCIPGPRIEKDGALQMLATN 295 (512)
Q Consensus 221 --~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~---~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~ 295 (512)
++.+.+++.+.+..++... ..++++++||++|.|+.+... +..| ..|++.|. .+++|....+.|+++.|.+
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~--~~~~~i~iSA~~g~~v~e~~~~~~~~~g-~~Ll~~l~-~~~~p~~~~~~~~~~~v~~ 239 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNT--NKVRFVPVVAPSGDNITHKSENMKWYNG-PTLEEYLD-QLELPPKPVDKPLRIPIQD 239 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--TTCEEEECBTTTTBTTTBCCSSCTTCCS-CCHHHHHT-TCCCCCCGGGSCCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCc--CCceEEEeecccCccccccccccccccc-hhHHHHHh-ccCCCCCCCCCCeEEEEEE
Confidence 2344566666666554322 246899999999998765432 2222 36888854 4666776778899999999
Q ss_pred EeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--cc--CCccccCCe
Q 010392 296 LEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CG--IDDIQIGET 371 (512)
Q Consensus 296 ~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~--l~~~~~Gdt 371 (512)
++.+++.|++++|||++|+|++||.|.+.|.+... +|++|.. ++.++++|.|||+|++ .| .+++++||+
T Consensus 240 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~---~V~~i~~----~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~ 312 (435)
T 1jny_A 240 VYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVG---EVRSIET----HHTKMDKAEPGDNIGFNVRGVEKKDIKRGDV 312 (435)
T ss_dssp EEEETTTEEEEEEECCBSCEETTCEEEEETTTEEE---EEEEEEE----TTEEESEECTTCEEEEEEESSCGGGCCTTCE
T ss_pred EEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEE---EEEEEEE----CCcEEeEEcCCCEEEEEEecCCHHHcCCccE
Confidence 99999999999999999999999999999998766 9999954 4578999999999998 34 468999999
Q ss_pred EecCCC
Q 010392 372 IADKVS 377 (512)
Q Consensus 372 l~~~~~ 377 (512)
|++++.
T Consensus 313 l~~~~~ 318 (435)
T 1jny_A 313 VGHPNN 318 (435)
T ss_dssp EECTTS
T ss_pred ecCCCC
Confidence 998754
No 17
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=1.2e-37 Score=330.20 Aligned_cols=287 Identities=21% Similarity=0.298 Sum_probs=220.2
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc---------------cceeeeeeccchhhhhcceeEEeeeeEEEEC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN---------------QTVKERIMDSNDLERERGITILSKNTSITYN 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~---------------~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 150 (512)
.+...||+++|++|+|||||+++|++..+..... .....+++|....|+++|+|++.....+.++
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 3457899999999999999999999885543321 1112577899999999999999999999999
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCC-cEEEEEeccCCCCCC--
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR-- 220 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-------~~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~-- 220 (512)
+..++|||||||.+|...+..++..+|++|+|+|+.++ ...++++++..+...++ |+++|+||+|+.+.+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 99999999999999999999999999999999999987 56799999999998886 599999999998643
Q ss_pred -chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCC--------cCCCchhhHHHHHHhCCC--CCCcccccc
Q 010392 221 -PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN--------LADDLGPLFESIMRCIPG--PRIEKDGAL 289 (512)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~--------~~~gi~~Ll~~i~~~lp~--p~~~~~~p~ 289 (512)
+++..+++.+.+..++... ..++++++||++|.|+.+... ....+.++|+.+...+|. |....+.|+
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~--~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~ 267 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFE--DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 267 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCG--GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCC
T ss_pred HHHHHHHHHHHHHHHcCCCc--ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCce
Confidence 2344555555555555432 246899999999998876432 122466777777777765 666778999
Q ss_pred eeeeEEEeeeC---CCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeee----cCceeecceecCCCEEEE--
Q 010392 290 QMLATNLEYDE---HKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYE----KFSRVSAEIVAAGDICAV-- 360 (512)
Q Consensus 290 ~~~V~~~~~~~---~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~----g~~~~~v~~a~aGdiv~i-- 360 (512)
++.|.+++..+ +.|+++.|||.+|+|++||.|.+.|.+... +|++|.... |.++.++++|.|||+|+|
T Consensus 268 r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~---~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l 344 (483)
T 3p26_A 268 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSC---IVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKL 344 (483)
T ss_dssp EEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEE---EEEEEEETTTC-----CCEESCEETTCEEEEEE
T ss_pred EEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeE---EEEEEEEcCccccccccccccEECCCCEEEEEE
Confidence 99999999887 589999999999999999999999998776 899997652 345689999999999999
Q ss_pred cc--CCccccCCeEecCCC
Q 010392 361 CG--IDDIQIGETIADKVS 377 (512)
Q Consensus 361 ~~--l~~~~~Gdtl~~~~~ 377 (512)
.+ .+++++||+|+++++
T Consensus 345 ~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 345 RKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp ESCCGGGCCTTCEEECTTC
T ss_pred EecccccCCceEEEEcCCC
Confidence 33 468999999998765
No 18
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=6.7e-38 Score=330.27 Aligned_cols=280 Identities=21% Similarity=0.267 Sum_probs=197.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc---------------cceeeeeeccchhhhhcceeEEeeeeEEEECC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN---------------QTVKERIMDSNDLERERGITILSKNTSITYND 151 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~---------------~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 151 (512)
+..++|+++||+|+|||||+++|++..+..... .....+++|..++|+++|+|+......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 457899999999999999999999866543211 01124578999999999999999999999999
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCc-------hhHHHHHHHHHHcCCc-EEEEEeccCCCCCC---
Q 010392 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--- 220 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~-------~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~--- 220 (512)
.+++|||||||.+|...+..++..+|++|||+|+.++.. .|+++++..+...++| +++|+||+|+...+
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999863 6899999999999998 99999999996532
Q ss_pred --chhhHhhhHHHHHHh-cCCccccccceeeeccccCccCCCCC-----CcCCCchhhHHHHHHhCCCCCCcccccceee
Q 010392 221 --PDYVINSTFELFIEL-NATDEQCDFQAIYASGIQGKAGLSPD-----NLADDLGPLFESIMRCIPGPRIEKDGALQML 292 (512)
Q Consensus 221 --~~~~~~~~~~~~~~~-~~~~~~~~~pvi~~Sa~~g~~~~~~~-----~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~ 292 (512)
++.+.+++.+.+..+ +... ..+++++++||++|.|+.+.. .|..| ..|+ .+++.+|.|..+.+.||++.
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~-~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g-~~L~-~~l~~i~~~~~~~~~p~~~~ 277 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG-PSLL-EYLDSMTHLERKVNAPFIMP 277 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH-HHHEEEEECBTTTTBTTSSCCCTTTCSSCCS-CCHH-HHHHHCCCCHHHHTSCCEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-cCCceEEecccccccccccccccccCccccc-hhHH-HHHHhCCCCcCCCCCCcEEE
Confidence 234455666666555 4321 124689999999999876543 22223 2355 44566888877778999999
Q ss_pred eEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--cc-CCccccC
Q 010392 293 ATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CG-IDDIQIG 369 (512)
Q Consensus 293 V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~-l~~~~~G 369 (512)
|++++.+ .|++++|||.+|+|++||.|.+.|.+... +|++|+.. .+.++++|.|||+|++ .| .+++++|
T Consensus 278 v~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~~---~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~~i~rG 349 (467)
T 1r5b_A 278 IASKYKD--LGTILEGKIEAGSIKKNSNVLVMPINQTL---EVTAIYDE---ADEEISSSICGDQVRLRVRGDDSDVQTG 349 (467)
T ss_dssp CCEEEES--SSEEEEEECCBSEEETTEEEEEETTTEEE---EEEEEECT---TCCEESEEETTCEEEEEEESCCTTCCTT
T ss_pred EEEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCCeeE---EEEEEecc---CCcEeeEEcCCCEEEEEEeccHhhCCce
Confidence 9999764 78999999999999999999999988665 89999532 2678999999999999 55 6689999
Q ss_pred CeEecCCC
Q 010392 370 ETIADKVS 377 (512)
Q Consensus 370 dtl~~~~~ 377 (512)
|+|+++++
T Consensus 350 ~vl~~~~~ 357 (467)
T 1r5b_A 350 YVLTSTKN 357 (467)
T ss_dssp CEEECSSS
T ss_pred EEEeCCCC
Confidence 99998764
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-38 Score=342.21 Aligned_cols=281 Identities=20% Similarity=0.260 Sum_probs=191.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc---------------ceeeeeeccchhhhhcceeEEeeeeEEEEC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ---------------TVKERIMDSNDLERERGITILSKNTSITYN 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~---------------~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 150 (512)
.+..+||+++||+|+|||||+++|++..+.+.... ....+++|..++|+++|+|+......+.++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45688999999999999999999997655433221 111678999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-----C--chhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-----P--MPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR-- 220 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-----~--~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~-- 220 (512)
+..++|||||||.+|...+..++..+|++|||||+.++ + ..++++++..+...++| +|+|+||+|+..++
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 99999999999999999999999999999999999875 4 88999999999999997 99999999997643
Q ss_pred -chhhHhhhHHHH-HHhcCCccccccceeeeccccCccCCCCCC---cCCC-chhhHHHHHHhCCCCCCcccccceeeeE
Q 010392 221 -PDYVINSTFELF-IELNATDEQCDFQAIYASGIQGKAGLSPDN---LADD-LGPLFESIMRCIPGPRIEKDGALQMLAT 294 (512)
Q Consensus 221 -~~~~~~~~~~~~-~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~---~~~g-i~~Ll~~i~~~lp~p~~~~~~p~~~~V~ 294 (512)
+..+.+++.+.+ ..++... ..+|++++||++|.|+.+... ..|. ...|++.|...+| |....+.||++.|+
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~--~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~ 410 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKT--SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCG--GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCc--cceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheee
Confidence 223444455544 3333321 256899999999997765331 1111 1378888887776 66677899999999
Q ss_pred EEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecc-eecCCCEEEE--ccCC--ccccC
Q 010392 295 NLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAE-IVAAGDICAV--CGID--DIQIG 369 (512)
Q Consensus 295 ~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~-~a~aGdiv~i--~~l~--~~~~G 369 (512)
+++.+ +.|++++|+|.+|+|++||.|.+.|.+... +|++|. .++.+++ +|.|||+|++ .+++ ++++|
T Consensus 411 ~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~---~V~~i~----~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG 482 (592)
T 3mca_A 411 DVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDA---YVKNVI----RNSDPSSTWAVAGDTVTLQLADIEVNQLRPG 482 (592)
T ss_dssp EEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEE---EEEEEE----CSSSCSCCEEETTCEEEEEESSSCGGGCCTT
T ss_pred EEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceE---EEEEEE----EcCccCcceecCCCEEEEEEccccccccceE
Confidence 99999 999999999999999999999999998766 899995 4567899 9999999997 5654 79999
Q ss_pred CeEecCCC
Q 010392 370 ETIADKVS 377 (512)
Q Consensus 370 dtl~~~~~ 377 (512)
|+|++++.
T Consensus 483 ~vl~~~~~ 490 (592)
T 3mca_A 483 DILSNYEN 490 (592)
T ss_dssp CEEECSSS
T ss_pred EEeccCCC
Confidence 99998764
No 20
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=3.7e-37 Score=323.78 Aligned_cols=280 Identities=22% Similarity=0.285 Sum_probs=228.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc--------------cc-eeeeeeccchhhhhcceeEEeeeeEEEECCe
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN--------------QT-VKERIMDSNDLERERGITILSKNTSITYNDT 152 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~--------------~~-~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 152 (512)
...+|+++||+|+|||||+++|++..+..... .. -..+++|..+.|+++|+|++.....+.+++.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 46899999999999999999999874332210 00 0134678889999999999999999999999
Q ss_pred eEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCch-------hHHHHHHHHHHcCCc-EEEEEeccCCCCCC---c
Q 010392 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMP-------QTRFVLKKALEFGHA-VVVVVNKIDRPSAR---P 221 (512)
Q Consensus 153 ~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~-------~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~---~ 221 (512)
.++|||||||.+|...+..++..+|++|+|+|+.++... ++++++..+...++| +++|+||+|+...+ +
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999988765 899999988888986 89999999997432 2
Q ss_pred hhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCC-cCCC-------------chhhHHHHHHhCCCCCCcccc
Q 010392 222 DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADD-------------LGPLFESIMRCIPGPRIEKDG 287 (512)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~-~~~g-------------i~~Ll~~i~~~lp~p~~~~~~ 287 (512)
+.+.+++.+++..++... ..+|++++||++|.|+.+... ..|. ...|++.|. .++.|....+.
T Consensus 166 ~~i~~~~~~~l~~~g~~~--~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~-~~~~p~~~~~~ 242 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYNP--KTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID-AIEQPSRPTDK 242 (458)
T ss_dssp HHHHHHHHHHHHHHTCCG--GGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHH-TSCCCCCCTTS
T ss_pred HHHHHHHHHHHHHcCCCc--cCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhh-ccCCCcccCCC
Confidence 345556666666555422 146899999999998876432 1221 236888754 57778778899
Q ss_pred cceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--
Q 010392 288 ALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI-- 363 (512)
Q Consensus 288 p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l-- 363 (512)
|++++|.+++.+++.|++++|||.+|.++.||+|.+.|.+... +|++|.. +..++++|.|||+|+| .|+
T Consensus 243 p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~---~V~~i~~----~~~~~~~a~aG~~v~i~l~gi~~ 315 (458)
T 1f60_A 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTT---EVKSVEM----HHEQLEQGVPGDNVGFNVKNVSV 315 (458)
T ss_dssp CCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEE---EEEEEEE----TTEECSCBCTTCEEEEEESSCCT
T ss_pred CcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceE---EEeEEEE----CCeEEEEEcCCCEEEEEEcCCcc
Confidence 9999999999999999999999999999999999999998665 8999953 4568999999999998 455
Q ss_pred CccccCCeEecCCC
Q 010392 364 DDIQIGETIADKVS 377 (512)
Q Consensus 364 ~~~~~Gdtl~~~~~ 377 (512)
+++++||+|+++++
T Consensus 316 ~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 316 KEIRRGNVCGDAKN 329 (458)
T ss_dssp TTSCTTCEEEETTS
T ss_pred cccCceeEEecCCC
Confidence 58999999998764
No 21
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.1e-36 Score=318.65 Aligned_cols=282 Identities=21% Similarity=0.247 Sum_probs=218.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc------------ccee-----eeeeccchhhhhcceeEEeeeeEEEE
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------QTVK-----ERIMDSNDLERERGITILSKNTSITY 149 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~------------~~~~-----~~~~d~~~~e~~~g~ti~~~~~~~~~ 149 (512)
+..++|+++||+|+|||||+++|++..+..... ++.. .+++|..++|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 346899999999999999999999876432211 1111 23578999999999999999889999
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCCc---hhhH
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSARP---DYVI 225 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~~---~~~~ 225 (512)
++.+++|||||||++|...+..++..+|++|+|+|+.++...++++++..+...++| +++|+||+|+.+.+. +.+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888874 899999999986432 2234
Q ss_pred hhhHHHHHHhcCCccccccceeeeccccCccCCCCCC-cCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcE
Q 010392 226 NSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGR 304 (512)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~-~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~ 304 (512)
+++.+++..++.. ...++++++||++|.|+.+... ..|.-.+.|..+++.+|.|....+.|+++.|+.++...+.|+
T Consensus 182 ~~~~~~~~~~g~~--~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~~ 259 (434)
T 1zun_B 182 ADYLKFAEGIAFK--PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFR 259 (434)
T ss_dssp HHHHHHHHTTTCC--CSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSSCC
T ss_pred HHHHHHHHHhCCC--ccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCCce
Confidence 4555555444311 2246899999999998766432 122211223335566888877788999999999988777788
Q ss_pred EEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccC--CccccCCeEecCCC
Q 010392 305 IAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGI--DDIQIGETIADKVS 377 (512)
Q Consensus 305 v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l--~~~~~Gdtl~~~~~ 377 (512)
...|+|.+|+|++||.|.+.|.+... +|++|.. +..++++|.|||+|++... .++++||+|+++++
T Consensus 260 g~~G~v~~G~l~~gd~v~~~p~~~~~---~V~~i~~----~~~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 260 GFAGTLASGIVHKGDEIVVLPSGKSS---RVKSIVT----FEGELEQAGPGQAVTLTMEDEIDISRGDLLVHADN 327 (434)
T ss_dssp EEEEECCBSCEETTCEEEETTTCCEE---EEEEEEE----TTEEESEECTTCEEEEEESSCCCCCTTCEEEETTS
T ss_pred EEEEEEecceEeCCCEEEEecCCeEE---EEEEEEE----cCcceeEecCCCEEEEEeCCccccCCccEEECCCC
Confidence 89999999999999999999988766 9999954 3458999999999999643 36889999998765
No 22
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=3.2e-37 Score=343.86 Aligned_cols=283 Identities=24% Similarity=0.326 Sum_probs=215.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.....+|+++||+|+|||||+++|++.............+.+|..+.|+++|+|+......+.+++..++|||||||.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 45678999999999999999999997521100001111235788899999999999988888888899999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--chhhHhhhHHHHHHhcCCcccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
...+..++..+|++|+|||+.++.+.|+++++..+...++| +|+|+||+|+.+.. .+.+.+++.+++...+... .
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~--~ 450 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG--D 450 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT--T
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc--c
Confidence 99999999999999999999999999999999999999999 78999999997521 1234456666666554321 2
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEE
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~ 322 (512)
.+|++++||++|.+.. ..+..|+.+|++.|.+.+|.|..+.+.||++.|++++.+++.|+|++|||++|+|++||.|.
T Consensus 451 ~vp~IpvSAktG~ng~--~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~ 528 (1289)
T 3avx_A 451 DTPIVRGSALKALEGD--AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 528 (1289)
T ss_dssp TCCEEECCSTTTTTCC--HHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEE
T ss_pred ceeEEEEEeccCCCCC--ccccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEE
Confidence 5789999999995321 11224789999999999999988889999999999999999999999999999999999999
Q ss_pred EccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC--CccccCCeEecCCC
Q 010392 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKVS 377 (512)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~~~~~ 377 (512)
+.|.+.. ...+|++|. .++.++++|.|||+|++ .++ +++++||+|++++.
T Consensus 529 I~ps~~~-~~~kVksI~----~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~ 582 (1289)
T 3avx_A 529 IVGIKET-QKSTCTGVE----MFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582 (1289)
T ss_dssp EESSSSC-EEEEEEEEE----CSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred EecCCCc-eeEEEEEEe----ecCceeeEEecCCcceeEeeecchhcCCcccEEecCCC
Confidence 9988731 123899994 44578999999999998 455 58999999998653
No 23
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-37 Score=331.95 Aligned_cols=287 Identities=21% Similarity=0.292 Sum_probs=229.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc---------------cceeeeeeccchhhhhcceeEEeeeeEEEEC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN---------------QTVKERIMDSNDLERERGITILSKNTSITYN 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~---------------~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 150 (512)
.....+|+++|++|+|||||+++|++..+..... .....+++|..+.|+++|+|+......+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4557899999999999999999999875543321 1112567889999999999999999999999
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCCc-EEEEEeccCCCCCC--
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR-- 220 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-------~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~~~-- 220 (512)
+..++|||||||.+|...+..++..+|++|+|||+.+| ...++.+++..+...++| +++|+||+|+...+
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 99999999999999999999999999999999999986 467999999999988875 99999999998643
Q ss_pred -chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCC----cCC----CchhhHHHHHHhCCC--CCCcccccc
Q 010392 221 -PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN----LAD----DLGPLFESIMRCIPG--PRIEKDGAL 289 (512)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~----~~~----gi~~Ll~~i~~~lp~--p~~~~~~p~ 289 (512)
.+++.+++...+..++... ..++++++||++|.|+.+... ..| .+.++|+.+...+|. |....+.||
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~--~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~ 401 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFE--DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 401 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCG--GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCC
T ss_pred HHHHHHHHHHHHHHhhcccc--cCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccch
Confidence 3344555666665555432 246899999999998876521 222 233334433333444 445678999
Q ss_pred eeeeEEEeeeC---CCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeee----cCceeecceecCCCEEEE--
Q 010392 290 QMLATNLEYDE---HKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYE----KFSRVSAEIVAAGDICAV-- 360 (512)
Q Consensus 290 ~~~V~~~~~~~---~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~----g~~~~~v~~a~aGdiv~i-- 360 (512)
++.|.+++..+ +.|+++.|||.+|+|++||.|.+.|.+... +|++|.... |..+.++++|.|||+|+|
T Consensus 402 r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~---~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l 478 (611)
T 3izq_1 402 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSC---IVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKL 478 (611)
T ss_dssp EEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEE---EEEEEECSSCCSCSSSCCCCCCEETTCEEEEEE
T ss_pred hhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceE---EEEEEEEcccccccccccccceecCCCcceEEe
Confidence 99999999987 589999999999999999999999998776 899997552 455789999999999999
Q ss_pred cc--CCccccCCeEecCCC
Q 010392 361 CG--IDDIQIGETIADKVS 377 (512)
Q Consensus 361 ~~--l~~~~~Gdtl~~~~~ 377 (512)
.+ ..++++||+|+++++
T Consensus 479 ~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 479 RKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp SSCCTTSCCTTCEEBCSTT
T ss_pred eeccHhhCcceEEccCCCC
Confidence 44 468999999998765
No 24
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=3.8e-36 Score=307.08 Aligned_cols=238 Identities=14% Similarity=0.137 Sum_probs=198.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
++|+++||+|+|||||+++|+ ++|+|++.....+.+++..++|||||||.+|...+
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~ 77 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSL 77 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHH
Confidence 389999999999999999997 34888888888888999999999999999999999
Q ss_pred HHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcE-EEEEe-ccCCCCCC-chhhHhhhHHHHHHhcCCccccccce
Q 010392 170 ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVN-KIDRPSAR-PDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~-ivviN-K~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
..+++.+|++|+|+| ..+...|+++++..+...++|. ++++| |+|+ +.+ .+...+++.+.+.... ...+|+
T Consensus 78 ~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~----~~~~~i 151 (370)
T 2elf_A 78 ITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV----LQDWEC 151 (370)
T ss_dssp HHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST----TTTCEE
T ss_pred HHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC----CCceEE
Confidence 999999999999999 8999999999999999999998 99999 9998 432 1223345555443322 235689
Q ss_pred ee--ecccc---CccCCCCCCcCCCchhhHHHHHHhCCCCCC---c-ccccceeeeEEEeeeCCCcEEEEEEEeecccCC
Q 010392 247 IY--ASGIQ---GKAGLSPDNLADDLGPLFESIMRCIPGPRI---E-KDGALQMLATNLEYDEHKGRIAIGRLHAGVLRK 317 (512)
Q Consensus 247 i~--~Sa~~---g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~---~-~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~ 317 (512)
++ +||++ |. |+++|++.|.+.+|.+.. . ...|++++|.+++..++.|++++|||++|+|++
T Consensus 152 i~~~~SA~~~~~g~----------gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~ 221 (370)
T 2elf_A 152 ISLNTNKSAKNPFE----------GVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKD 221 (370)
T ss_dssp EECCCCTTSSSTTT----------THHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEET
T ss_pred EecccccccCcCCC----------CHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEee
Confidence 99 99999 77 999999999998876521 1 334577779999999999999999999999999
Q ss_pred CCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEEc--c--CCccccCCeEec
Q 010392 318 GMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--G--IDDIQIGETIAD 374 (512)
Q Consensus 318 g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--~--l~~~~~Gdtl~~ 374 (512)
||+|++.|.+... +|++|.. +..++++|.|||+|++. + .+++++||+|++
T Consensus 222 gd~v~~~p~~~~~---~V~~i~~----~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 222 KDKTKIFPLDRDI---EIRSIQS----HDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp TCEEEEETTTEEE---EEEEEEE----TTEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CCEEEECCCCcEE---EEeEEEE----CCCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 9999999998766 8999943 34789999999999995 4 468999999997
No 25
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=1.9e-35 Score=307.23 Aligned_cols=261 Identities=24% Similarity=0.283 Sum_probs=209.2
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC---------------
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--------------- 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--------------- 150 (512)
++..+||+++||+|+|||||+++|++. ..|..+.|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 73 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 73 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC-------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC-------------ccccChhhhcCCcEEEEeeeeeeccccccccccccccccc
Confidence 456789999999999999999999843 1355677888999998766554441
Q ss_pred --------CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHcCC-cEEEEEeccCCCCCC
Q 010392 151 --------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR 220 (512)
Q Consensus 151 --------~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~ 220 (512)
...++|||||||.+|...+...+..+|++|+|+|+.++. ..++++++..+...++ |+++|+||+|+.+.+
T Consensus 74 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 74 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp TTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred ccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence 168999999999999999999999999999999999997 8999999998888876 799999999997643
Q ss_pred c-hhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeee
Q 010392 221 P-DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYD 299 (512)
Q Consensus 221 ~-~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~ 299 (512)
. ....+++.+.+... ....+|++++||++|. |+.+|+++|.+.+|.|..+.+.|+++.|++++..
T Consensus 154 ~~~~~~~~i~~~l~~~----~~~~~~~i~vSA~~g~----------gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v 219 (410)
T 1kk1_A 154 KALENYRQIKEFIEGT----VAENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDV 219 (410)
T ss_dssp HHHHHHHHHHHHHTTS----TTTTCCEEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhc----CcCCCeEEEeeCCCCC----------CHHHHHHHHHHhCCCCccccCCCcEEEEEEEEec
Confidence 1 23344455544322 1235789999999999 9999999999999999888889999999988743
Q ss_pred --------CCCcEEEEEEEeecccCCCCEEEEccCCCce---------eeeeeeeeEeeecCceeecceecCCCEEEEc-
Q 010392 300 --------EHKGRIAIGRLHAGVLRKGMEVRVCTSEDSC---------RYARISELFVYEKFSRVSAEIVAAGDICAVC- 361 (512)
Q Consensus 300 --------~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~---------~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~- 361 (512)
++.|++++|||++|+|++||.|.+.|.++.. ...+|++|+ .++.++++|.|||+|++.
T Consensus 220 ~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~----~~~~~v~~a~aG~~v~~~~ 295 (410)
T 1kk1_A 220 NKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ----AGGQFVEEAYPGGLVGVGT 295 (410)
T ss_dssp SCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE----ETTEEESEECSSSCEEEEE
T ss_pred cCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEE----ECCeEecEEcCCCEEEEEE
Confidence 5688999999999999999999998864311 134788884 356789999999999984
Q ss_pred c----C--CccccCCeEecCCC
Q 010392 362 G----I--DDIQIGETIADKVS 377 (512)
Q Consensus 362 ~----l--~~~~~Gdtl~~~~~ 377 (512)
+ + +++.+||+|++++.
T Consensus 296 ~~~~~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 296 KLDPYLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp SSCGGGTGGGTTTTCEEECTTC
T ss_pred ecCcccchhhccceeEEecCCC
Confidence 2 2 46888999998764
No 26
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=7.2e-35 Score=302.64 Aligned_cols=261 Identities=22% Similarity=0.280 Sum_probs=198.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE---------------C
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY---------------N 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---------------~ 150 (512)
++...||+++||+|+|||||+++|++. ..|....|+++|+|+........+ .
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 71 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCP 71 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSC-------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCC-------------ccccCcccccCCcEEEeccccccccccccccccccccccc
Confidence 446789999999999999999999743 124556778889998766544332 1
Q ss_pred --------CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHcCC-cEEEEEeccCCCCCC
Q 010392 151 --------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR 220 (512)
Q Consensus 151 --------~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~ 220 (512)
...++|||||||++|...+...+..+|++|+|+|++++. ..++++++..+...+. |+++|+||+|+.+.+
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 168999999999999998888888999999999999987 8999999998888876 799999999997643
Q ss_pred -chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeee
Q 010392 221 -PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYD 299 (512)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~ 299 (512)
.....+++.+.+.... ...+|++++||++|. |+++|++.|.+.+|.|..+.+.|+++.|++++..
T Consensus 152 ~~~~~~~~i~~~l~~~~----~~~~~~i~vSA~~g~----------gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v 217 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTI----AENAPIIPISAHHEA----------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDI 217 (408)
T ss_dssp TTTTHHHHHHHHHTTST----TTTCCEEEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhhcC----CCCCeEEEeeCCCCC----------CHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEee
Confidence 2234555655554321 235689999999999 9999999999999999888899999999988754
Q ss_pred C--------CCcEEEEEEEeecccCCCCEEEEccCCCc---------eeeeeeeeeEeeecCceeecceecCCCEEEEc-
Q 010392 300 E--------HKGRIAIGRLHAGVLRKGMEVRVCTSEDS---------CRYARISELFVYEKFSRVSAEIVAAGDICAVC- 361 (512)
Q Consensus 300 ~--------~~G~v~~grV~sG~l~~g~~v~~~~~~~~---------~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~- 361 (512)
. +.|.++.|+|.+|+|++||.|.+.|.++. -...+|++|+. ++.++++|.|||+|++.
T Consensus 218 ~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~~~ 293 (408)
T 1s0u_A 218 NKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA----GNTILRKAHPGGLIGVGT 293 (408)
T ss_dssp CCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE----TTEEESEECSSSCEEEEC
T ss_pred cCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEE----CCEEcCEEeCCCeEEEEe
Confidence 3 47889999999999999999999875420 01348889853 45789999999999993
Q ss_pred ----cC--CccccCCeEecCCC
Q 010392 362 ----GI--DDIQIGETIADKVS 377 (512)
Q Consensus 362 ----~l--~~~~~Gdtl~~~~~ 377 (512)
++ +++.+|++|++++.
T Consensus 294 ~~~~~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 294 TLDPYLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp SSCGGGTGGGTTTTCEEESTTC
T ss_pred ccCcccchhhccceeEEECCCC
Confidence 23 37889999998764
No 27
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=7.1e-36 Score=315.63 Aligned_cols=259 Identities=23% Similarity=0.316 Sum_probs=206.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++||+|+|||||+++|++... ...+|..+.|+++|+|++.....+.+++..++|||||||.+|..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~ 88 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIR 88 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHH
Confidence 467999999999999999999986531 23567788899999999999989999999999999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC-CchhhHhhhHHHHHHh-cCCccccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-RPDYVINSTFELFIEL-NATDEQCDFQ 245 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~p 245 (512)
.+..++..+|++|+|+|+.++...++++++..+...++|+++|+||+|+.+. ..+...+++.+.+... +. ..+|
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~----~~~~ 164 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL----KNSS 164 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG----GGCC
T ss_pred HHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc----ccce
Confidence 9999999999999999999999999999999999999999999999999753 2334455555555443 22 2568
Q ss_pred eeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC--CCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEE
Q 010392 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP--RIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRV 323 (512)
Q Consensus 246 vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p--~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~ 323 (512)
++++||++|. |+.+|++.|.+.++.| ..+.+.||++.|.+++..++.|+++.|+|.+|+|++||.|.+
T Consensus 165 ii~vSA~~g~----------gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~ 234 (482)
T 1wb1_A 165 IIPISAKTGF----------GVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKV 234 (482)
T ss_dssp EEECCTTTCT----------THHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECC
T ss_pred EEEEECcCCC----------CHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEE
Confidence 9999999999 9999999999987666 666778999999999999999999999999999999999999
Q ss_pred ccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC--ccccCCeE-ecCC
Q 010392 324 CTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETI-ADKV 376 (512)
Q Consensus 324 ~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~--~~~~Gdtl-~~~~ 376 (512)
.|.+... +|++|. .+..++++|.|||.|++ .+++ ++++||+| ++++
T Consensus 235 ~p~~~~~---~V~~i~----~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~ 285 (482)
T 1wb1_A 235 LPINMST---KVRSIQ----YFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDT 285 (482)
T ss_dssp TTTCCCE---EECCBC----GGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTC
T ss_pred CCCCcEE---EEeEEE----ECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCC
Confidence 9988765 899994 45678999999999998 4654 68999999 5544
No 28
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=3.1e-34 Score=297.39 Aligned_cols=273 Identities=22% Similarity=0.222 Sum_probs=205.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE-----ECCeeEEEEeCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-----YNDTKINIIDTP 160 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-----~~~~~i~liDtP 160 (512)
.....+|+++|++|+|||||+++|++...... .+............+..++++......... .....++|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 44578999999999999999999987543321 111111111112222233433322211111 122689999999
Q ss_pred CCCCChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHcCC-cEEEEEeccCCCCCC-chhhHhhhHHHHHHhcC
Q 010392 161 GHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR-PDYVINSTFELFIELNA 237 (512)
Q Consensus 161 G~~~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~~~-p~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~~~ 237 (512)
||++|...+..++..+|++|+|+|+.++. ..++.+++..+...+. |+++|+||+|+.+.+ .....+++.+.+....
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~- 162 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW- 162 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTST-
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhC-
Confidence 99999999999999999999999999987 8999999999988886 899999999997543 2233344444443222
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEEEeee--------CCCcEEEEEE
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYD--------EHKGRIAIGR 309 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~~--------~~~G~v~~gr 309 (512)
...+|++++||++|. |+.+|++.|.+.+|.|..+.+.|+++.|++++.. ++.|++++|+
T Consensus 163 ---~~~~~ii~vSA~~g~----------gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~ 229 (403)
T 3sjy_A 163 ---AENVPIIPVSALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGS 229 (403)
T ss_dssp ---TTTCCEEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEE
T ss_pred ---CCCCEEEEEECCCCc----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEE
Confidence 235689999999999 9999999999999999888899999999988764 3489999999
Q ss_pred EeecccCCCCEEEEccCCCc-------e--eeeeeeeeEeeecCceeecceecCCCEEEEc-----cC--CccccCCeEe
Q 010392 310 LHAGVLRKGMEVRVCTSEDS-------C--RYARISELFVYEKFSRVSAEIVAAGDICAVC-----GI--DDIQIGETIA 373 (512)
Q Consensus 310 V~sG~l~~g~~v~~~~~~~~-------~--~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-----~l--~~~~~Gdtl~ 373 (512)
|.+|+|++||+|.+.|.++. + ...+|++|+ .++.++++|.|||+|++. ++ +++.+|++|+
T Consensus 230 v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~----~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~ 305 (403)
T 3sjy_A 230 IIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIR----FGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIIT 305 (403)
T ss_dssp EEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE----ETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEE
T ss_pred EEeCEEecCCEEEEeCCcccccccccccccccEEEEEEE----ECCEEcCEEeCCCEEEEEeccccccchhhhccccEEe
Confidence 99999999999999886631 0 024889985 356799999999999983 22 4788999999
Q ss_pred cCCC
Q 010392 374 DKVS 377 (512)
Q Consensus 374 ~~~~ 377 (512)
+++.
T Consensus 306 ~~~~ 309 (403)
T 3sjy_A 306 LADA 309 (403)
T ss_dssp ETTC
T ss_pred CCCC
Confidence 8765
No 29
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=5e-35 Score=314.81 Aligned_cols=299 Identities=25% Similarity=0.259 Sum_probs=222.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE------------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY------------------ 149 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~------------------ 149 (512)
+.++|+++||+|+|||||+++|++........ +|+|.......+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~----------------ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA----------------GGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccC----------------CceecccCeEEEeechhhhhcccccccccccc
Confidence 45789999999999999999999764432111 12222222222221
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc--------
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP-------- 221 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~-------- 221 (512)
....++|||||||.+|..++.++++.+|++|+|+|+++|++.++.+.|..+...++|+++|+||+|+.....
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchH
Confidence 123599999999999999888889999999999999999999999999999999999999999999964210
Q ss_pred -------hhh-------HhhhHHHHHHhcCCc--------cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 222 -------DYV-------INSTFELFIELNATD--------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 222 -------~~~-------~~~~~~~~~~~~~~~--------~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
..+ +.++.+.+.+.+... ....+|++++||++|. |+.+|+++|...+|
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~----------GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE----------GIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC----------CchhHHHHHHhhcc
Confidence 111 112222222222211 1235699999999999 99999999998776
Q ss_pred CCC-----CcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeee--------cCce
Q 010392 280 GPR-----IEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYE--------KFSR 346 (512)
Q Consensus 280 ~p~-----~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~--------g~~~ 346 (512)
.+. .+.+.|+.+.|++++.+++.|+++++||++|+|++||.|.+.+.+..+ ..+|++|+.+. +...
T Consensus 218 ~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~-~~rV~~i~~~~~~~elr~~~~~~ 296 (594)
T 1g7s_A 218 QYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVI-STRIRSLLKPRPLEEMRESRKKF 296 (594)
T ss_dssp HHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEE-EEECCEEEEECCCC----CCCSE
T ss_pred ccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCce-eEEEeEEEeccccchhhhccCCc
Confidence 432 245789999999999999999999999999999999999999887644 45899998762 5667
Q ss_pred eecceec--CCCEEEEccCCccccCCeEecCCCCC--------CCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHH
Q 010392 347 VSAEIVA--AGDICAVCGIDDIQIGETIADKVSGK--------PLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLR 416 (512)
Q Consensus 347 ~~v~~a~--aGdiv~i~~l~~~~~Gdtl~~~~~~~--------~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~ 416 (512)
.++++|. +|++|++.|++++.+||+|+...+.. .+..+.+..+.+.+.+.+.+ ... -+.|.
T Consensus 297 ~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~----~gs-----~eal~ 367 (594)
T 1g7s_A 297 QKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADT----LGS-----LEAVV 367 (594)
T ss_dssp EECSEEESSEEEEEECSSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESS----HHH-----HHHHH
T ss_pred eEccEEcCCCCcEEEEcccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCC----CCC-----HHHHH
Confidence 8899998 99999999999999999999765431 01222333445556666544 122 46788
Q ss_pred HHHHHH
Q 010392 417 DRLYRE 422 (512)
Q Consensus 417 ~~l~~l 422 (512)
++|.++
T Consensus 368 ~~l~~~ 373 (594)
T 1g7s_A 368 KILRDM 373 (594)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 888886
No 30
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=3.1e-34 Score=303.84 Aligned_cols=254 Identities=25% Similarity=0.354 Sum_probs=205.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCCCh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFG 166 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~~ 166 (512)
+.++|+++||+|+|||||+++|++....... ..|+|.+.....+.+ .+..++|||||||.+|.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~----------------~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAME----------------AGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSS----------------SCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc----------------CCceeEEEeEEEEEeCCCCEEEEEECCChHHHH
Confidence 3567999999999999999999876543222 225566665555555 45689999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccce
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 246 (512)
..+..++..+|++|||+|+.++...++.++|..+...++|+++|+||+|+.+++......++.+. ..........+|+
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~--~~~~e~~~~~~~i 144 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY--DVVCEDYGGDVQA 144 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT--TSCCCCSSSSEEE
T ss_pred HHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh--hhhHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999876655544444332 1111222235789
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHHHhCC--CCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEc
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIP--GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVC 324 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp--~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~ 324 (512)
+++||++|. |+.+|++.|...++ .+..+++.|+.+.|++++.+++.|+++.++|.+|+|++||.|...
T Consensus 145 v~vSAktG~----------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g 214 (537)
T 3izy_P 145 VHVSALTGE----------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAG 214 (537)
T ss_dssp CCCCSSSSC----------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCS
T ss_pred EEEECCCCC----------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeC
Confidence 999999999 99999999988754 444567789999999999999999999999999999999988432
Q ss_pred cCCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCcc-ccCCeEecCCC
Q 010392 325 TSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDI-QIGETIADKVS 377 (512)
Q Consensus 325 ~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~-~~Gdtl~~~~~ 377 (512)
.. ..+|++|+... ..++++|.|||+|+|.|++++ .+||+|+..++
T Consensus 215 --~~---~~kVr~i~~~~---g~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~ 260 (537)
T 3izy_P 215 --KS---WAKVRLMFDEN---GRAVNEAYPSMPVGIIGWRDLPSAGDEILEVES 260 (537)
T ss_dssp --SC---CEEEEEEEECC---CCCSCCSCCSTTCCCCSSEEEEEEESSCCSCCS
T ss_pred --Cc---eEEEEEEEcCC---CCCCcEEcCCCEEEEECCCCCCCCCCEEEecCC
Confidence 22 24888886443 367999999999999999875 88999998754
No 31
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=1.4e-33 Score=296.48 Aligned_cols=253 Identities=24% Similarity=0.276 Sum_probs=203.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
+.++|+++||+|+|||||+++|+....... ..+|+|++.....+.+++..++|||||||.+|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~----------------e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG----------------EAGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBT----------------TBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccc----------------cCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 567899999999999999999987543211 1247777777777778888999999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccccee
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAI 247 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi 247 (512)
.+.+++..+|++|||+|+.++...++.++|..+...++|+++++||+|+..++.+.+..++.+. .+........+|++
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~--~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQY--GILPEEWGGESQFV 144 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCC--CCCTTCCSSSCEEE
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHh--hhhHHHhCCCccEE
Confidence 9888899999999999999999999999999999999999999999999876544443332210 00011111247899
Q ss_pred eeccccCccCCCCCCcCCCchhhHHHHHHhC--CCCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEcc
Q 010392 248 YASGIQGKAGLSPDNLADDLGPLFESIMRCI--PGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCT 325 (512)
Q Consensus 248 ~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l--p~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~ 325 (512)
++||++|. |+.+|++.|.... +.+..+++.|+.+.|++++.+++.|++++++|.+|+|++||.|.+.+
T Consensus 145 ~vSAktG~----------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~ 214 (501)
T 1zo1_I 145 HVSAKAGT----------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF 214 (501)
T ss_dssp ECCTTTCT----------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB
T ss_pred EEeeeecc----------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc
Confidence 99999999 9999999998653 33445667889999999999999999999999999999999998854
Q ss_pred CCCceeeeeeeeeEeeecCceeecceecCCCEEEEccCCc-cccCCeEecCC
Q 010392 326 SEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD-IQIGETIADKV 376 (512)
Q Consensus 326 ~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~-~~~Gdtl~~~~ 376 (512)
.. .+|+.|+ +.+..++++|.||+.+.+.|+++ ...||+++...
T Consensus 215 ~~-----~kVr~i~---~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 215 EY-----GRVRAMR---NELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVR 258 (501)
T ss_dssp SS-----CEEEEEC---CTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEEC
T ss_pred ce-----eEEEEEE---ecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEecC
Confidence 32 3788875 33446799999999999999887 47899998543
No 32
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=99.92 E-value=2e-25 Score=219.08 Aligned_cols=118 Identities=41% Similarity=0.688 Sum_probs=89.7
Q ss_pred EEccCCccccCCeEecCCCCCCCCCCCCCCCeEEEEEEecCCCCCCcCCcccchHHHHHHHHHHHhcCcceEEEECCCCC
Q 010392 359 AVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETAD 438 (512)
Q Consensus 359 ~i~~l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~av~~~~~~~~~~~~~~~~~~kl~~~l~~l~~edp~l~v~~~~~t~ 438 (512)
+++|++++.+|||||+...+.+++++++++|+++++|.|+++|+.++|+++++.++|.++|.|++++||+|+|+++++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 56789999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecHHHHHHHHHHHchhcCceEEeeceeEEEEee
Q 010392 439 TFIVSGRGTLHITILIENILPLWRYQKNIWGLWLNFLAK 477 (512)
Q Consensus 439 e~~l~g~Gelhl~i~~~~L~~~y~v~~~~~~~~v~~~e~ 477 (512)
+++|+|||||||+|+++||+|+ |+++.++.|+|+||||
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt 119 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE 119 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE
Confidence 9999999999999999999999 9999999999999998
No 33
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.86 E-value=2.5e-24 Score=222.50 Aligned_cols=248 Identities=21% Similarity=0.261 Sum_probs=160.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe-eEEEEeCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-KINIIDTPGHSD 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~-~i~liDtPG~~~ 164 (512)
....++|+|+|+.|+|||||+++|++...... +...|+|+......+.+.+. .++||||||+.+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~---------------~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV---------------SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc---------------CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 34678999999999999999999987654221 22346777777778888765 899999999988
Q ss_pred ChHH-------HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC
Q 010392 165 FGGE-------VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (512)
Q Consensus 165 ~~~~-------~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~ 237 (512)
|... +..++..+|++|+|+|+ +...++..++..+.+.++|+++|+||+|+...+..+ ..+. +
T Consensus 96 ~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~----~~~~---l-- 164 (423)
T 3qq5_A 96 VGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEE----LKGL---Y-- 164 (423)
T ss_dssp CCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTH----HHHH---S--
T ss_pred ccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHH----HHHH---H--
Confidence 7533 56678889999999998 778889999999999999999999999998765331 1111 1
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcc-------cccceeeeEEE--------------
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEK-------DGALQMLATNL-------------- 296 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~-------~~p~~~~V~~~-------------- 296 (512)
....+++++++||++|. |++++++.|.+.++.+...+ .+.+.+++..+
T Consensus 165 -~~~~g~~v~~vSAktg~----------gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr~ilp~~ 233 (423)
T 3qq5_A 165 -ESRYEAKVLLVSALQKK----------GFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQV 233 (423)
T ss_dssp -SCCTTCCCCCCSSCCTT----------STTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTCCCHHHH
T ss_pred -HHHcCCCEEEEECCCCC----------CHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCCccccchH
Confidence 11234689999999999 99999999999996541111 12233333322
Q ss_pred ------eeeCCCcEEEEEEEeecccCCC---CEEEEccCCCceeeeeeeeeEeeecCceeeccee---cC---CCEEEE-
Q 010392 297 ------EYDEHKGRIAIGRLHAGVLRKG---MEVRVCTSEDSCRYARISELFVYEKFSRVSAEIV---AA---GDICAV- 360 (512)
Q Consensus 297 ------~~~~~~G~v~~grV~sG~l~~g---~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a---~a---Gdiv~i- 360 (512)
..+...+.++..+.+.+.|+.. ..+.+..+.. ..+|..+ .....+.... .| ||+..+
T Consensus 234 ~~ird~l~~~~~~~~~~~~~l~~~l~~l~~~~~lv~tdsq~---~~~v~~~----~p~~~~~t~~s~l~a~~kG~~~~~~ 306 (423)
T 3qq5_A 234 HAIREALDREAIALVVKERELRYVMENIGMKPKLVITDSQV---AMKVASD----VPEDVELTTFSIVESRYRGDLAYFV 306 (423)
T ss_dssp HHHHHHHHTTCEEEECCSTTHHHHHHHCSSCCSCCCBCTTH---HHHHHHT----CCCSSSCCCBHHHHHHHSSCSHHHH
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHhcCCCccEEEeccHH---HHHHhcc----CCCCCCcccHHHHhhccCCCHHHHH
Confidence 2233333344444445555433 2333333321 1234443 2333333333 33 998887
Q ss_pred c---cCCccccCCeEecCCC
Q 010392 361 C---GIDDIQIGETIADKVS 377 (512)
Q Consensus 361 ~---~l~~~~~Gdtl~~~~~ 377 (512)
. .+++++.||++...+.
T Consensus 307 ~g~~~~~~~~~gd~v~~~e~ 326 (423)
T 3qq5_A 307 ESVRKIEELEDGDTVVIMEG 326 (423)
T ss_dssp HHHHTTTTCCTTCEEEEECC
T ss_pred HHHHHHHhCCCCCEEEEecc
Confidence 3 3778999999976544
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.86 E-value=5.9e-21 Score=174.26 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=117.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|++|+|||||+++|++.........++ +.+.......+......+.||||||+.+|.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 75 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI--------------GAAFFSQTLAVNDATVKFEIWDTAGQERYH 75 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCS--------------CCSEEEEEEEETTEEEEEEEEECCCSGGGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCc--------------eeEEEEEEEEECCEEEEEEEEeCCCChhhh
Confidence 346789999999999999999999876554333222 333322222222224579999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
..+..+++.+|++++|+|+++... .....|+..+... ++|+++|+||+|+...+ ....+++.++....
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~------- 147 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR-KVTAEDAQTYAQEN------- 147 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC-CSCHHHHHHHHHHT-------
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc-cCCHHHHHHHHHHc-------
Confidence 999999999999999999887533 4455666666654 67899999999996543 11233444443332
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.++++++||++|. |+.++++.|.+.++..
T Consensus 148 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 148 GLFFMETSAKTAT----------NVKEIFYEIARRLPRV 176 (181)
T ss_dssp TCEEEECCSSSCT----------THHHHHHHHHHTCC--
T ss_pred CCEEEEEECCCCC----------CHHHHHHHHHHHHHhc
Confidence 3479999999999 9999999999988654
No 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.85 E-value=1.5e-21 Score=177.63 Aligned_cols=162 Identities=33% Similarity=0.446 Sum_probs=122.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.+.++|+++|.+|+|||||+++|++........+ +++.......+.+++..+.+|||||+.+|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAG----------------GITQHIGAYQVTVNDKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCC----------------SSSTTCCCCEEEETTEEEEESCCCSSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCC----------------ceeEeeeEEEEEeCCceEEEEECCCCHHHH
Confidence 4578899999999999999999998765433222 223333445567788899999999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc--cc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC--DF 244 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 244 (512)
..+..++..+|++++|+|+.++...+..+.+..+...++|+++|+||+|+...+.++ +.+.+.......... .+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDR----VMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHH----HHHHHTTTTCCBTTTTSSE
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHH----HHHHHHhcCcChhHcCCcc
Confidence 887788889999999999998888888888888877889999999999997643222 222222222111111 26
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+++++||++|. |++++++.|.+.+
T Consensus 146 ~~~~~Sa~~~~----------gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 146 IFCKLSAKTKE----------GLDHLLEMILLVS 169 (178)
T ss_dssp EEEECCSSSSH----------HHHHHHHHHHHHH
T ss_pred cEEEEecCCCC----------CHHHHHHHHHHhh
Confidence 89999999999 9999999988754
No 36
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=3.7e-21 Score=182.22 Aligned_cols=175 Identities=14% Similarity=0.151 Sum_probs=121.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE-ECCeeEEEEeCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-YNDTKINIIDTPGHSD 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~~~~i~liDtPG~~~ 164 (512)
....++|+|+|++|+|||||+++|++......... ..|+|.......+. +++..++||||||+.+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASK--------------TPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTC--------------CCCSCCCEEEEEESCTTSCSEEEEECCCCCS
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecC--------------CCCcccceEEEEecCCCCCcEEEEcCCCCCc
Confidence 34578999999999999999999998752111111 11444444444444 4567899999999754
Q ss_pred C----------hHHHHHHHHh---ccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhhhHH
Q 010392 165 F----------GGEVERILNM---VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFE 230 (512)
Q Consensus 165 ~----------~~~~~~~~~~---~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~~~~ 230 (512)
. ...+..++.. +|++++|+|+.++.......++..+...++|+++|+||+|+...+ .....+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 171 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQK 171 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHH
Confidence 3 4445566666 788999999999888888888888888899999999999997532 1223344444
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCc
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE 284 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~ 284 (512)
.+...........++++++||++|. |+.+|++.|.+.++.+...
T Consensus 172 ~l~~~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 172 SLDAYRDAGYAGKLTVQLFSALKRT----------GLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp HHHHHHHHTCCSCEEEEEEBTTTTB----------SHHHHHHHHHHHHC-----
T ss_pred HHHhhhhcccCCCCeEEEeecCCCc----------CHHHHHHHHHHhcCccCCc
Confidence 4433210001134679999999999 9999999999999876543
No 37
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.85 E-value=6.2e-21 Score=180.29 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=114.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
+..+|+|+|..|+|||||+++|+.+.+...+.+++ |.+.......+.....++.||||+|+++|..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Ti--------------g~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI--------------GIDFLSKTMYLEDRTIRLQLWDTAGLERFRS 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC------------------------CEEEEEECSSCEEEEEEECCSCTTTCGG
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCcc--------------ceEEEEEEEEecceEEEEEEEECCCchhhhh
Confidence 45789999999999999999999887765544443 3333222222233345789999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
.+..+++.+|++++|+|.++. .......|+..+... ++|+++|+||+|+...+ .-..++..++..++ +
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r-~V~~~e~~~~a~~~-------~ 149 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR-QVSIEEGERKAKEL-------N 149 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC-CSCHHHHHHHHHHH-------T
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcC-cccHHHHhhHHHHh-------C
Confidence 999999999999999998763 445556677666543 57999999999987543 12233444444443 3
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
++++++||++|. |++++|+.|.+.++..
T Consensus 150 ~~~~e~SAktg~----------nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 150 VMFIETSAKAGY----------NVKQLFRRVAAALPGM 177 (216)
T ss_dssp CEEEEEBTTTTB----------SHHHHHHHHHHHC---
T ss_pred CeeEEEeCCCCc----------CHHHHHHHHHHHHHhh
Confidence 468999999999 9999999999988643
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=7.8e-21 Score=175.94 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=119.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
++..+|+++|+.|+|||||+++|++..+.....++. |.+.......+......+.||||||+.+|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTI--------------GASFMTKTVPCGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCS--------------SEEEEEEEEECSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCc--------------ceeEEEEEEEeCCEEEEEEEEcCCCchhhH
Confidence 456899999999999999999999876543333322 444444434444455689999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
..+..++..+|++++|+|+++... .....|+..+... ++|+++|+||+|+...+ ....+++.++....
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~-~v~~~~~~~~~~~~------- 158 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR-EVPLKDAKEYAESI------- 158 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHTT-------
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-ccCHHHHHHHHHHc-------
Confidence 999999999999999999887532 3445566666554 68999999999996432 11233444444322
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.++++++||++|. |++++++.|.+.++..
T Consensus 159 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 159 GAIVVETSAKNAI----------NIEELFQGISRQIPPL 187 (192)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHTCC--
T ss_pred CCEEEEEeCCCCc----------CHHHHHHHHHHHHHhh
Confidence 3579999999999 9999999999988653
No 39
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=1.3e-20 Score=168.39 Aligned_cols=153 Identities=24% Similarity=0.336 Sum_probs=113.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC----
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD---- 164 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~---- 164 (512)
+++|+++|++|+|||||+++|++........ ..+++.......+.+.+..+.+|||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 65 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVAD---------------VPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKW 65 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccC---------------CCCceecceEEEEEeCCceEEEEECCCCCCccch
Confidence 3689999999999999999999865431111 114455555566777888999999999987
Q ss_pred ---ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 165 ---FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 165 ---~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
+...+..++..+|++++|+|+.++.......+...+...++|+++|+||+|+...+ +++.+.. .+
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~-~~------ 133 (161)
T 2dyk_A 66 EKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE-----LYLGPLY-GL------ 133 (161)
T ss_dssp CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG-----GGCGGGG-GG------
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch-----HhHHHHH-hC------
Confidence 34556677889999999999998776666667777777889999999999987541 1111111 11
Q ss_pred ccc-ceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 242 CDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 242 ~~~-pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.+ +++++||++|. |++++++.+.+.+|
T Consensus 134 -~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 134 -GFGDPIPTSSEHAR----------GLEELLEAIWERLP 161 (161)
T ss_dssp -SSCSCEECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred -CCCCeEEEecccCC----------ChHHHHHHHHHhCc
Confidence 22 68999999999 99999999998875
No 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.85 E-value=1e-20 Score=170.41 Aligned_cols=160 Identities=15% Similarity=0.190 Sum_probs=116.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|++|+|||||+++|++.........+. +.+.......+...+..+.+|||||+.+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 70 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI--------------GAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS--------------SEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--------------ceEEEEEEEEECCEEEEEEEEeCCCcHHhhh
Confidence 45789999999999999999999876543332222 3344333333333356899999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
.+..++..+|++++|+|+++.. ......|+..+... ++|+++|+||+|+...+. ...++..+..... .
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~ 142 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA-VDFQEAQSYADDN-------S 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHHT-------T
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccc-cCHHHHHHHHHHc-------C
Confidence 9999999999999999988753 23444566666554 578999999999864321 1123333333222 3
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++++++||++|. |++++++.|.+.++
T Consensus 143 ~~~~~~Sa~~g~----------gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 LLFMETSAKTSM----------NVNEIFMAIAKKLP 168 (170)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 578999999999 99999999998875
No 41
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.84 E-value=1.6e-20 Score=170.82 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=116.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.....+|+++|+.|+|||||+++|++........++. +.+.......+......+.||||||+.++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI--------------GVEFGTRIIEVSGQKIKLQIWDTAGQERF 77 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSC--------------CCCEEEEEEEETTEEEEEEEEECTTGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--------------ceEEEEEEEEECCeEEEEEEEECCCChHh
Confidence 3457899999999999999999999877654333332 33333333333233457899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+..+++.+|++++|+|+.+... .....|+..+.. .++|+++|+||+|+...+ ....+++.+.....
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~------ 150 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR-DVTYEEAKQFAEEN------ 150 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHT------
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc-ccCHHHHHHHHHHc------
Confidence 9999999999999999999887532 233455555554 468999999999996432 11233444444332
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++++.+.+
T Consensus 151 -~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 176 (179)
T 1z0f_A 151 -GLLFLEASAKTGE----------NVEDAFLEAAKKI 176 (179)
T ss_dssp -TCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred -CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3479999999999 9999999988764
No 42
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=2.4e-20 Score=167.93 Aligned_cols=160 Identities=21% Similarity=0.254 Sum_probs=114.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|+.|+|||||+++|++........++. +.+.......+......+.+|||||+.++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI--------------GAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS--------------SEEEEEEEEEETTEEEEEEEEEECCSGGGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceeEEEEEEEECCEEEEEEEEECCCChhhhhh
Confidence 4689999999999999999999876554333322 33333333333223457899999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCc-hhh-HhhhHHHHHHhcCCcccc
Q 010392 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARP-DYV-INSTFELFIELNATDEQC 242 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 242 (512)
+..+++.+|++++|+|+++.. ......|+..+... ++|+++|+||+|+..... ..+ .++..+.....
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~------- 141 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK------- 141 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-------
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc-------
Confidence 999999999999999998753 23344555555543 689999999999975421 111 22223332222
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.++++.|.+.++
T Consensus 142 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 142 GLLFFETSAKTGE----------NVNDVFLGIGEKIP 168 (170)
T ss_dssp TCEEEECCTTTCT----------THHHHHHHHHTTSC
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 3479999999999 99999999998774
No 43
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=173.11 Aligned_cols=159 Identities=17% Similarity=0.170 Sum_probs=117.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.+...+|+++|++|+|||||+++|++........++ ++.......+.+.+ ..+.||||||+.
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYIST----------------IGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCC----------------SSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc----------------ccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 345789999999999999999999987665443332 23344444555555 578999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
++...+..+++.+|++++|+|+.+... .....|+..+... ++|+++|+||+|+...+.. ...+...+....
T Consensus 77 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~---- 151 (196)
T 3tkl_A 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV-DYTTAKEFADSL---- 151 (196)
T ss_dssp GGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS-CHHHHHHHHHHT----
T ss_pred hhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccc-CHHHHHHHHHHc----
Confidence 999999999999999999999887432 3344566656554 6899999999999754321 122233333322
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.|.+.+
T Consensus 152 ---~~~~~~~Sa~~g~----------gv~~l~~~l~~~i 177 (196)
T 3tkl_A 152 ---GIPFLETSAKNAT----------NVEQSFMTMAAEI 177 (196)
T ss_dssp ---TCCEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred ---CCcEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3479999999999 9999988888765
No 44
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=173.31 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=116.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+...+|+|+|++|+|||||+++|++.........+. |.+.......+......+.||||||+.++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI--------------GVEFSTRTVMLGTAAVKAQIWDTAGLERY 87 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS--------------SEEEEEEEEEETTEEEEEEEEEESCCCTT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceeEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 4567899999999999999999999876654433332 33433333333334567899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+..++..+|++|+|+|+.+... .....|+..+... ++|+++|+||+|+...+. ...++...+....
T Consensus 88 ~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------ 160 (193)
T 2oil_A 88 RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQARE-VPTEEARMFAENN------ 160 (193)
T ss_dssp CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHHT------
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccc-cCHHHHHHHHHHc------
Confidence 9999999999999999999887433 3334566666543 679999999999975321 1223333333222
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.|.+.+
T Consensus 161 -~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 186 (193)
T 2oil_A 161 -GLLFLETSALDST----------NVELAFETVLKEI 186 (193)
T ss_dssp -TCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred -CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3479999999999 9999999887654
No 45
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.84 E-value=2.5e-20 Score=167.93 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=116.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
+..+|+++|++|+|||||+++|++........++. |.+.......+......+.+|||||+.++..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 70 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI--------------GASFMTKTVQYQNELHKFLIWDTAGLERFRA 70 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCC--------------SEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce--------------eEEEEEEEEEECCeEEEEEEEcCCCchhhhc
Confidence 45789999999999999999999876543333322 4444333333333346789999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
.+..+++.+|++++|+|+++... .....|+..+... ++|+++|+||+|+...+ +...++........ .
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~-~v~~~~~~~~~~~~-------~ 142 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR-EVMERDAKDYADSI-------H 142 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC-CSCHHHHHHHHHHT-------T
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccc-ccCHHHHHHHHHHc-------C
Confidence 99999999999999999987533 3334566666654 46899999999997532 11122233332222 3
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++++++||++|. |++++++.|.+.++
T Consensus 143 ~~~~~~Sa~~~~----------~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 AIFVETSAKNAI----------NINELFIEISRRIP 168 (170)
T ss_dssp CEEEECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred CEEEEEeCCCCc----------CHHHHHHHHHHHHh
Confidence 579999999999 99999999998875
No 46
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.84 E-value=2e-20 Score=185.74 Aligned_cols=158 Identities=22% Similarity=0.274 Sum_probs=118.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC---
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~--- 164 (512)
+..+|+++|++|+|||||+|+|++.......... ++|.......+.+++.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~---------------~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRP---------------QTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS---------------CCCCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCC---------------CceeEEEEEEEEeCCcEEEEecCccccchhh
Confidence 4567999999999999999999987664322111 2222222234567789999999999987
Q ss_pred -----ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC
Q 010392 165 -----FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (512)
Q Consensus 165 -----~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~ 237 (512)
|...+..+++.+|++++|+|++++....+..++..+... ++|+++|+||+|+...+. .. .+....+ .
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~----~~~~~~~-~ 144 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE-EA----MKAYHEL-L 144 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH-HH----HHHHHHT-S
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH-HH----HHHHHHh-c
Confidence 556677788999999999999988777777777778777 899999999999975421 12 2222222 1
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
...+++++||++|. |++.|++.|.+.+|.
T Consensus 145 ----~~~~~~~iSA~~g~----------gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 145 ----PEAEPRMLSALDER----------QVAELKADLLALMPE 173 (301)
T ss_dssp ----TTSEEEECCTTCHH----------HHHHHHHHHHTTCCB
T ss_pred ----CcCcEEEEeCCCCC----------CHHHHHHHHHHhccc
Confidence 12368999999999 999999999988764
No 47
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.84 E-value=3.3e-20 Score=184.97 Aligned_cols=165 Identities=21% Similarity=0.317 Sum_probs=123.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-CeeEEEEeCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSD 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~i~liDtPG~~~ 164 (512)
+...-.|+++|++|+|||||+|+|++......... .++|.......+.++ +..++||||||+.+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~---------------~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPK---------------AGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSS---------------SCCCCSCEEEEEEETTTEEEEEEECCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCC---------------CCceeeEEEEEEecCCCCeEEEEECcCCCc
Confidence 44567899999999999999999998765533221 144555555666777 89999999999977
Q ss_pred Ch----------HHHHHHHHhccEEEEEEeCCCCCchhHHHH-HHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHH
Q 010392 165 FG----------GEVERILNMVEGVLLVVDSVEGPMPQTRFV-LKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (512)
Q Consensus 165 ~~----------~~~~~~~~~~d~~llvida~~g~~~~~~~~-l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~ 233 (512)
+. ..+..++..+|++|+|+|+.++...++... +..+...++|+++|+||+|+.... ..... ..+.+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~-~~~~~-~~~~l~ 149 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPA-KNVLP-LIDEIH 149 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSG-GGGHH-HHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCH-HHHHH-HHHHHH
Confidence 55 566788899999999999999887777776 777777889999999999997321 12222 222222
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.... ...+++++||++|. |+.+|++.+.+.+|..
T Consensus 150 ~~~~----~~~~i~~vSA~~g~----------gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 150 KKHP----ELTEIVPISALKGA----------NLDELVKTILKYLPEG 183 (308)
T ss_dssp HHCT----TCCCEEECBTTTTB----------SHHHHHHHHHHHSCBC
T ss_pred Hhcc----CCCeEEEEeCCCCC----------CHHHHHHHHHHhCccC
Confidence 2111 12468999999999 9999999999998753
No 48
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.84 E-value=1.3e-20 Score=173.80 Aligned_cols=160 Identities=20% Similarity=0.203 Sum_probs=116.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
+...+|+++|++|+|||||+++|++.........+. |.+.......+......+.||||||+.+|.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV--------------GIDFKVKTVYRHDKRIKLQIWDTAGQERYR 85 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--------------CCEEEEEEEEETTEEEEEEEEECCSCCSSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce--------------eEEEEEEEEEECCeEEEEEEEeCCCcHHHh
Confidence 456899999999999999999999876644333322 344433333333334689999999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
..+..++..+|++|+|+|+++.. ......|+..+... ++|+++|+||+|+...+ ....+++.++....
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~------- 157 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER-VVPAEDGRRLADDL------- 157 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHH-------
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc-CCCHHHHHHHHHHc-------
Confidence 88888999999999999988742 33445666666664 68999999999986532 11123334433333
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.|.+.+
T Consensus 158 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~i 183 (189)
T 2gf9_A 158 GFEFFEASAKENI----------NVKQVFERLVDVI 183 (189)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 2479999999999 9999999988765
No 49
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.84 E-value=2.8e-20 Score=169.07 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=115.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
....+|+++|+.|+|||||+++|++........++. +.......+.+.+ ..+.+|||||+.+
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI----------------GIDFLSKTMYLEDRTVRLQLWDTAGQER 75 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCC----------------SEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce----------------eeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence 345789999999999999999999876554333322 2333333444554 5789999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
+...+..++..+|++++|+|+++.. ......++..+.. .++|+++|+||+|+...+. ...++........
T Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~----- 149 (179)
T 2y8e_A 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ-VSTEEGERKAKEL----- 149 (179)
T ss_dssp GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCC-SCHHHHHHHHHHH-----
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCc-CCHHHHHHHHHHc-----
Confidence 9999999999999999999988742 2334455555544 3689999999999875321 1122333333322
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.++++++||++|. |++++++.|.+.++.
T Consensus 150 --~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 150 --NVMFIETSAKAGY----------NVKQLFRRVAAALPG 177 (179)
T ss_dssp --TCEEEEEBTTTTB----------SHHHHHHHHHHTCC-
T ss_pred --CCeEEEEeCCCCC----------CHHHHHHHHHHHHhh
Confidence 3479999999999 999999999988753
No 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=173.29 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=109.0
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.....+|+++|++|+|||||+++|++..+......+. |.+.......+......+.||||||+.+|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 90 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL--------------GVDFQMKTLIVDGERTVLQLWDTAGQERF 90 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTCTTC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCc--------------cceeEEEEEEECCEEEEEEEEECCCCcch
Confidence 4467899999999999999999999876543222221 33333322223223357999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCC----chhh-HhhhHHHHHHhc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSAR----PDYV-INSTFELFIELN 236 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~----~~~~-~~~~~~~~~~~~ 236 (512)
...+..+++.+|++|+|+|+.+... .....|+..+... ++|+++|+||+|+.... ...+ .++..+.....
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~- 169 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY- 169 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH-
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc-
Confidence 9999999999999999999887533 2334555555543 68999999999986311 1111 12222222222
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.++++.|.+.+.
T Consensus 170 ------~~~~~~~SA~~g~----------gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 170 ------GALFCETSAKDGS----------NIVEAVLHLAREVK 196 (199)
T ss_dssp ------TCEEEECCTTTCT----------THHHHHHHHHHHHT
T ss_pred ------CCeEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 3479999999999 99999999987653
No 51
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.83 E-value=2.9e-20 Score=172.44 Aligned_cols=162 Identities=17% Similarity=0.234 Sum_probs=116.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCC-cCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVF-RDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~-~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
.....+|+|+|+.|+|||||+++|++..+.. ...+++ | .....+.+.+..+.||||||+.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~--------------~----~~~~~~~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATV--------------G----YNVETFEKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCS--------------S----EEEEEEEETTEEEEEEEECCSGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccc--------------c----eeEEEEEeCCEEEEEEECCCCHh
Confidence 4567899999999999999999999876654 222222 2 23334568889999999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc-----------CCcEEEEEeccCCCCCCchhhHhhhHHHH
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF-----------GHAVVVVVNKIDRPSARPDYVINSTFELF 232 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~-----------~~p~ivviNK~Dl~~~~~~~~~~~~~~~~ 232 (512)
|...+..+++.+|++|+|+|+++.. ......++..+... ++|+++|+||+|+..... .+++.+.+
T Consensus 76 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~ 152 (199)
T 4bas_A 76 FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT---AAELVEIL 152 (199)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC---HHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC---HHHHHHHh
Confidence 9999999999999999999998754 34455666666554 789999999999976532 22222222
Q ss_pred HHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 233 ~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
..... .....++++++||++|. |++++++.|.+.+.
T Consensus 153 ~~~~~-~~~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 153 DLTTL-MGDHPFVIFASNGLKGT----------GVHEGFSWLQETAS 188 (199)
T ss_dssp THHHH-HTTSCEEEEECBTTTTB----------THHHHHHHHHHHHH
T ss_pred cchhh-ccCCeeEEEEeeCCCcc----------CHHHHHHHHHHHHH
Confidence 11000 01135689999999999 99999999988763
No 52
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.83 E-value=3.7e-20 Score=172.62 Aligned_cols=160 Identities=21% Similarity=0.158 Sum_probs=115.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
+...+|+|+|++|+|||||+++|++........++. |.+.......+......+.||||||+.+|.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV--------------GIDFKVKTIYRNDKRIKLQIWDTAGLERYR 71 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC--------------SEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc--------------ceeEEEEEEEECCeEEEEEEEECCCchhhc
Confidence 356899999999999999999999876544333332 334333333332334688999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
..+..+++.+|++|+|+|+.+... .....|+..+.. .++|+++|+||+|+...+. ...++..++...+
T Consensus 72 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------- 143 (203)
T 1zbd_A 72 TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV-VSSERGRQLADHL------- 143 (203)
T ss_dssp HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCC-SCHHHHHHHHHHH-------
T ss_pred chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccc-cCHHHHHHHHHHC-------
Confidence 999999999999999999887532 334456666655 3689999999999975431 1223333333332
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.|.+.+
T Consensus 144 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 169 (203)
T 1zbd_A 144 GFEFFEASAKDNI----------NVKQTFERLVDVI 169 (203)
T ss_dssp TCEEEECBTTTTB----------SSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 2479999999999 8888888887654
No 53
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1e-20 Score=174.90 Aligned_cols=161 Identities=20% Similarity=0.163 Sum_probs=118.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+...+|+|+|+.|+|||||+++|++.........+. +++.......+......+.||||||+.+|
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 85 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV--------------GIDFKVKTVYRHEKRVKLQIWDTAGQERY 85 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEE--------------TTTEEEEEEEETTTTEEEEEECHHHHHHC
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCe--------------eeEEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 3457899999999999999999999876654333322 44444444444456778999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+..+++.+|++|+|+|+++. .......|+..+.. .++|+++|+||+|+...+. ...++...+....
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------ 158 (191)
T 3dz8_A 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERV-VPTEKGQLLAEQL------ 158 (191)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHHH------
T ss_pred HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHHHHc------
Confidence 99999999999999999998864 23344566666666 3689999999999864321 1222333333332
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.|.+.+
T Consensus 159 -~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 184 (191)
T 3dz8_A 159 -GFDFFEASAKENI----------SVRQAFERLVDAI 184 (191)
T ss_dssp -TCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred -CCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 3479999999999 9999999888764
No 54
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=6.1e-20 Score=168.95 Aligned_cols=162 Identities=20% Similarity=0.210 Sum_probs=114.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.+..+|+++|++|+|||||+++|++.... ...+ |+......+.+++..+.+|||||+.++.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~------------------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP------------------TIGSNVEEIVINNTRFLMWDIGGQESLR 74 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC------------------CSCSSCEEEEETTEEEEEEECCC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC------------------CCccceEEEEECCEEEEEEECCCCHhHH
Confidence 45688999999999999999999976543 1111 1222334556778999999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..++..+|++++|+|+++.. ......++..+.. .+.|+++|+||+|+..... .+++.+.+..... ..
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~--~~ 149 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTSI--KD 149 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGC--CS
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhh--cC
Confidence 99999999999999999988753 3445556666654 4789999999999975321 2333333321111 12
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
..++++++||++|. |+++++++|.+.++.+.
T Consensus 150 ~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 150 HQWHIQACCALTGE----------GLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp SCEEEEECBTTTTB----------THHHHHHHHHHHHCC--
T ss_pred CCcEEEEccCCCCc----------CHHHHHHHHHHHHHHHh
Confidence 34689999999999 99999999999886654
No 55
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.83 E-value=2.9e-20 Score=167.20 Aligned_cols=157 Identities=16% Similarity=0.189 Sum_probs=112.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~~ 165 (512)
...+|+++|++|+|||||+++|++........++. +.+... ..+.+. ...+.+|||||+.++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI--------------GVDFLE--RQIQVNDEDVRLMLWDTAGQEEF 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCC--------------SSSEEE--EEEEETTEEEEEEEECCTTGGGT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce--------------EEEEEE--EEEEECCEEEEEEEEcCCCcHhH
Confidence 56789999999999999999999876543333322 222222 233333 357899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
...+..++..+|++++|+|+++.. ......|+..+... +.|+++|+||+|+...+. ...+++.+.....
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------- 139 (168)
T 1z2a_A 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSC-IKNEEAEGLAKRL------- 139 (168)
T ss_dssp TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCS-SCHHHHHHHHHHH-------
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccc-cCHHHHHHHHHHc-------
Confidence 888899999999999999988743 23344555555443 789999999999875321 1123333333332
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.|.+.+
T Consensus 140 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 140 KLRFYRTSVKEDL----------NVSEVFKYLAEKH 165 (168)
T ss_dssp TCEEEECBTTTTB----------SSHHHHHHHHHHH
T ss_pred CCeEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 3479999999999 9999999988754
No 56
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.2e-19 Score=163.56 Aligned_cols=160 Identities=17% Similarity=0.131 Sum_probs=112.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|++|+|||||+++|++........++. +.+.. ...........+.+|||||+.++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV--------------EDTYR-QVISCDKSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCS--------------CEEEE-EEEEETTEEEEEEEEECCSCSSCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc--------------cccEE-EEEEECCEEEEEEEEECCCchhhHHH
Confidence 4789999999999999999999865543333222 11111 11112222357899999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc-----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
+..++..+|++++|+|+++.. ......++..+.+. ++|+++|+||+|+...+.. ...+........
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v-~~~~~~~~~~~~------- 139 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREV-QSSEAEALARTW------- 139 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCS-CHHHHHHHHHHH-------
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccccc-CHHHHHHHHHHh-------
Confidence 999999999999999988642 33445566555543 6899999999998653211 112222222222
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.++++++||++|. |++++++.|.+.+...
T Consensus 140 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 140 KCAFMETSAKLNH----------NVKELFQELLNLEKRR 168 (172)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHTCCSS
T ss_pred CCeEEEecCCCCc----------CHHHHHHHHHHHHhhh
Confidence 3478999999999 9999999999987654
No 57
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.83 E-value=6.6e-20 Score=167.79 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=112.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.....+|+++|++|+|||||+++|+.........+++ +... ...+...+ ..+.+|||||+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTI--------------EDSY---LKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC--------------CEEE---EEEEEETTEEEEEEEEECCSCG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc--------------ccee---EEEEEeCCcEEEEEEEECCCch
Confidence 3457899999999999999999999876554443332 2222 22333444 356779999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
+|...+..+++.+|++++|+|+.+.. ......|+..+.. .++|+++|+||+|+...+ ....++..++....
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~v~~~~~~~~~~~~--- 153 (183)
T 3kkq_A 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR-KVTRDQGKEMATKY--- 153 (183)
T ss_dssp GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC-CSCHHHHHHHHHHH---
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhcc-CcCHHHHHHHHHHh---
Confidence 99999999999999999999988742 2233445444433 468999999999987532 12223344443333
Q ss_pred ccccccceeeeccc-cCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 239 DEQCDFQAIYASGI-QGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~-~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||+ +|. |++++++.|.+.+
T Consensus 154 ----~~~~~~~Sa~~~~~----------~v~~l~~~l~~~i 180 (183)
T 3kkq_A 154 ----NIPYIETSAKDPPL----------NVDKTFHDLVRVI 180 (183)
T ss_dssp ----TCCEEEEBCSSSCB----------SHHHHHHHHHHHH
T ss_pred ----CCeEEEeccCCCCC----------CHHHHHHHHHHHH
Confidence 2469999999 998 9999999988754
No 58
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.83 E-value=1.1e-19 Score=167.63 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=116.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+|+|++|+|||||+++|++........+++ +.+ ...+.+.+..+.||||||+.+|..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~----~~~~~~~~~~~~l~Dt~G~~~~~~ 82 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--------------GFN----MRKITKGNVTIKLWDIGGQPRFRS 82 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--------------SEE----EEEEEETTEEEEEEEECCSHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCC--------------cee----EEEEEeCCEEEEEEECCCCHhHHH
Confidence 46789999999999999999999876543332222 222 234667889999999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..++..+|++++|+|+++.. ......++..+.. .++|+++|+||+|+..... .+++.+.+..... ...
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~--~~~ 157 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD---EKELIEKMNLSAI--QDR 157 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGGC--CSS
T ss_pred HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC---HHHHHHHhChhhh--ccC
Confidence 9999999999999999988742 3344455555543 4789999999999975421 1222222211111 123
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.++++++||++|. |+++++++|.+.+..
T Consensus 158 ~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 158 EICCYSISCKEKD----------NIDITLQWLIQHSKS 185 (188)
T ss_dssp CEEEEECCTTTCT----------THHHHHHHHHHTCC-
T ss_pred CeeEEEEECCCCC----------CHHHHHHHHHHHHHh
Confidence 5679999999999 999999999988754
No 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=8e-20 Score=169.61 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=111.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeee----eccchhh--hhcceeEEeeeeEEEEC---------
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERI----MDSNDLE--RERGITILSKNTSITYN--------- 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~----~d~~~~e--~~~g~ti~~~~~~~~~~--------- 150 (512)
.+...+|+|+|++|+|||||+++|++........+++...+ ....... .....+.......+...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 34578899999999999999999999866543333321000 0000000 00000000000000000
Q ss_pred --------CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH-cCCcEEEEEeccCCCCCC
Q 010392 151 --------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE-FGHAVVVVVNKIDRPSAR 220 (512)
Q Consensus 151 --------~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~-~~~p~ivviNK~Dl~~~~ 220 (512)
...+.||||||+.+|...+..+++.+|++|+|+|+.++.. .....|+..+.. .+.|+++|+||+|+ ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~-~~- 161 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK-NK- 161 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC-C--
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc-cc-
Confidence 0689999999999999999999999999999999988643 333455555554 46899999999993 22
Q ss_pred chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 221 PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.....+++.+.+... .++++++||++|. |+.+++++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 202 (208)
T 3clv_A 162 FQVDILEVQKYAQDN-------NLLFIQTSAKTGT----------NIKNIFYMLAEEI 202 (208)
T ss_dssp CCSCHHHHHHHHHHT-------TCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc-------CCcEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 122344555554432 3479999999999 9999999887654
No 60
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.83 E-value=5.8e-20 Score=169.96 Aligned_cols=161 Identities=17% Similarity=0.265 Sum_probs=110.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC---
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH--- 162 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~--- 162 (512)
.....+|+++|++|+|||||+++|++..+....... .|.|...... .. +.++.+|||||+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--------------~~~t~~~~~~--~~-~~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSK--------------PGKTQTLNFY--II-NDELHFVDVPGYGFA 82 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEE--EE-TTTEEEEECCCBCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC--------------CCceeeEEEE--EE-CCcEEEEECCCCCcc
Confidence 446789999999999999999999976532221111 1333333222 22 347999999994
Q ss_pred -------CCChHHHHHHHHhc---cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhhhHHH
Q 010392 163 -------SDFGGEVERILNMV---EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFEL 231 (512)
Q Consensus 163 -------~~~~~~~~~~~~~~---d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~~~~~ 231 (512)
..|...+..++..+ |++++|+|+.++.......++..+...++|+++|+||+|+...+ .....+++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 162 (195)
T 1svi_A 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQT 162 (195)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHH
Confidence 44555566677776 99999999998877777777788888899999999999997543 12222333332
Q ss_pred HHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 232 ~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+ .. ....+++++||++|. |+.++++.|.+.++
T Consensus 163 ~---~~---~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 163 L---NI---DPEDELILFSSETKK----------GKDEAWGAIKKMIN 194 (195)
T ss_dssp H---TC---CTTSEEEECCTTTCT----------THHHHHHHHHHHHT
T ss_pred H---cc---cCCCceEEEEccCCC----------CHHHHHHHHHHHhc
Confidence 2 21 124579999999999 99999999987654
No 61
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.83 E-value=8.6e-20 Score=163.92 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=110.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|++|+|||||+++|++........++. +.... ....+......+.+|||||+.++...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~ 67 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--------------EDSYR-KQVEVDCQQCMLEILDTAGTEQFTAM 67 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCS--------------EEEEE-EEEESSSCEEEEEEEEECSSCSSTTH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc--------------cceEE-EEEEECCEEEEEEEEECCChHHHHHH
Confidence 4689999999999999999999876544333332 11111 11112223457899999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
+..++..+|++++|+|+.+.. ......++..+.. .++|+++|+||+|+...+ ....+++.+..... ..
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~------~~ 140 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER-VVGKEQGQNLARQW------CN 140 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHT------TS
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccc-cCCHHHHHHHHHHc------cC
Confidence 999999999999999988742 2233445544444 378999999999996532 11123333333322 13
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++++++||++|. |++++++.|.+.+
T Consensus 141 ~~~~~~Sa~~~~----------gi~~l~~~l~~~i 165 (167)
T 1c1y_A 141 CAFLESSAKSKI----------NVNEIFYDLVRQI 165 (167)
T ss_dssp CEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred CcEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 579999999999 9999999998764
No 62
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.83 E-value=7.2e-20 Score=166.69 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=112.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.....+|+++|+.|+|||||+++|++........+++ +..+. ..+.+++ ..+.||||||+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~~---~~~~~~~~~~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI--------------EDSYT---KICSVDGIPARLDILDTAGQE 68 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC--------------CEEEE---EEEEETTEEEEEEEEECCCTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCc--------------CceEE---EEEEECCEEEEEEEEECCCch
Confidence 4567899999999999999999999886554433332 22221 2334444 478899999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHH----HcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~----~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
+|...+..++..+|++++|+|+.+.. ......++..+. ..++|+++|+||+|+...+. ...++...+....
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~--- 144 (181)
T 2fn4_A 69 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ-VPRSEASAFGASH--- 144 (181)
T ss_dssp TTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC-SCHHHHHHHHHHT---
T ss_pred hhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc-cCHHHHHHHHHHc---
Confidence 99999999999999999999988742 233344444442 23689999999999865321 1122222222221
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.++++.|.+.+.
T Consensus 145 ----~~~~~~~Sa~~~~----------gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 145 ----HVAYFEASAKLRL----------NVDEAFEQLVRAVR 171 (181)
T ss_dssp ----TCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred ----CCeEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 99999999887653
No 63
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.83 E-value=1.3e-19 Score=162.55 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=113.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 169 (512)
.+|+++|++|+|||||+++|++..... ..++ +......+.+.+..+.+|||||+.++...+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t------------------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPT------------------IGFNVETVEYKNISFTVWDVGGQDKIRPLW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCC------------------SSCCEEEEECSSCEEEEEECCCCGGGHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCc------------------CceeEEEEEECCEEEEEEEcCCChhhHHHH
Confidence 379999999999999999999876542 1111 112234456678899999999999999999
Q ss_pred HHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccccc
Q 010392 170 ERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (512)
Q Consensus 170 ~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (512)
..++..+|++++|+|+++.. ......++..+... +.|+++|+||+|+..... .+++.+.+..... ....+
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~ 136 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RHRNW 136 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGC--SSCCE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC---HHHHHHHhCcccc--cCccE
Confidence 99999999999999988752 23344555555442 789999999999975421 2223332211111 12356
Q ss_pred ceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 245 pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+++++||++|. |++++++.|.+.+.
T Consensus 137 ~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 137 YIQATCATSGD----------GLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEECBTTTTB----------THHHHHHHHHHHC-
T ss_pred EEEEcccCCCc----------CHHHHHHHHHHHHh
Confidence 79999999999 99999999998774
No 64
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=171.43 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=115.0
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.....+|+++|++|+|||||+++|++........+ +++.......+.+.+ ..+.+|||||+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYIT----------------TIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTT----------------TBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCC----------------CceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 45678999999999999999999987655433222 234444445556666 679999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
++...+..++..+|++++|+|+++... .....|+..+... ++|+++|+||+|+...+.. ...+........
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~----- 143 (181)
T 3tw8_B 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVV-ETEDAYKFAGQM----- 143 (181)
T ss_dssp GCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCS-CHHHHHHHHHHH-----
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhccc-CHHHHHHHHHHc-----
Confidence 998888889999999999999987532 2334455555554 4899999999998754311 112233333222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.++++.|.+.+.
T Consensus 144 --~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 144 --GIQLFETSAKENV----------NVEEMFNCITELVL 170 (181)
T ss_dssp --TCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred --CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 2469999999999 99999999987653
No 65
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.82 E-value=3.5e-20 Score=167.01 Aligned_cols=157 Identities=21% Similarity=0.219 Sum_probs=110.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|++|+|||||+++|++........++. +.......+.+++ ..+.||||||+.++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 65 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----------------GIDFKIKTVDINGKKVKLQIWDTAGQERF 65 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-----------------------CCEEEEEEESSSCEEEEEEECCTTGGGT
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc----------------ceeEEEEEEEECCEEEEEEEEeCCCChhh
Confidence 45789999999999999999999876543322221 2222223344443 57899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+..++..+|++++|+|+.+... .....|+..+... ++|+++|+||+|+.... ...++..++....
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~------ 137 (170)
T 1g16_A 66 RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV--VTADQGEALAKEL------ 137 (170)
T ss_dssp SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC--SCHHHHHHHHHHH------
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc--cCHHHHHHHHHHc------
Confidence 8888999999999999999887432 3344566655553 68999999999994321 1223333333333
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |++++++.|.+.+.
T Consensus 138 -~~~~~~~Sa~~~~----------gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 138 -GIPFIESSAKNDD----------NVNEIFFTLAKLIQ 164 (170)
T ss_dssp -TCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 3479999999999 99999999887653
No 66
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.82 E-value=1.2e-19 Score=162.91 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=108.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCCh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFG 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~ 166 (512)
..+|+++|++|+|||||+++|++........++. +.+. ...+.+.+ ..+.+|||||+.++.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~l~D~~G~~~~~ 66 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK--------------ADSY---RKKVVLDGEEVQIDILDTAGQEDYA 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC--------------CEEE---EEEEEETTEEEEEEEEECCC---CH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCc--------------ceEE---EEEEEECCEEEEEEEEECCCcchhH
Confidence 5789999999999999999999876543333332 1111 12233343 478999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..++..+|++++|+|+.+... .....++..+... ++|+++|+||+|+...+. ...++..+.....
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------ 139 (168)
T 1u8z_A 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRADQW------ 139 (168)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC-SCHHHHHHHHHHH------
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCc-cCHHHHHHHHHHc------
Confidence 999999999999999999887422 2334454444442 689999999999975331 1233344443332
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.+.+.+
T Consensus 140 -~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 165 (168)
T 1u8z_A 140 -NVNYVETSAKTRA----------NVDKVFFDLMREI 165 (168)
T ss_dssp -TCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred -CCeEEEeCCCCCC----------CHHHHHHHHHHHH
Confidence 3469999999999 9999999988754
No 67
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.82 E-value=2.8e-20 Score=167.79 Aligned_cols=158 Identities=19% Similarity=0.190 Sum_probs=106.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~ 164 (512)
....+|+++|++|+|||||+++|++........++. +.+... ..+..+ ...+.+|||||+.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--------------GASFLT--KKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC--------------SCEEEE--EEEESSSCEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCcc--------------ceEEEE--EEEEECCEEEEEEEEECCCcHh
Confidence 346789999999999999999999876543333322 222222 223333 35789999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
+...+..+++.+|++++|+|+.+... .....|+..+.. .++|+++|+||+|+...+. ...++..+.....
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~----- 141 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH-VSIQEAESYAESV----- 141 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCC-SCHHHHHHHHHHT-----
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccc-cCHHHHHHHHHHc-----
Confidence 98888888899999999999887432 333455555544 4689999999999975321 1223344443332
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.|.+.+
T Consensus 142 --~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 167 (170)
T 1z08_A 142 --GAKHYHTSAKQNK----------GIEELFLDLCKRM 167 (170)
T ss_dssp --TCEEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred --CCeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 3478999999999 9999999998765
No 68
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.82 E-value=3.6e-20 Score=171.24 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=112.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
....+|+++|+.|+|||||+++|++.........+. +.+... ..+..++ ..+.||||||+.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGA--RMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----C--------------CSSEEE--EEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc--------------cceeEE--EEEEECCEEEEEEEEECCCchh
Confidence 346789999999999999999999876644333222 323322 2333443 5889999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|...+..+++.+|++|+|+|+++.. ......|+..+... ++|+++|+||+|+...+. ...++..++....
T Consensus 83 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~----- 156 (191)
T 2a5j_A 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD-VKREEGEAFAREH----- 156 (191)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHHH-----
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccc-cCHHHHHHHHHHc-----
Confidence 9888899999999999999988743 23344566666554 689999999999964321 1123333333322
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.|.+.+
T Consensus 157 --~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 182 (191)
T 2a5j_A 157 --GLIFMETSAKTAC----------NVEEAFINTAKEI 182 (191)
T ss_dssp --TCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred --CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3478999999999 9999999888754
No 69
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=173.77 Aligned_cols=163 Identities=19% Similarity=0.152 Sum_probs=113.6
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
...+..+|+|+|.+|+|||||+++|++........++. +.+. .....+......+.||||||+.+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTV--------------ENTY-SKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCS--------------EEEE-EEEEC----CEEEEEEEECCCCT
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCcc--------------ceEE-EEEEEECCEEEEEEEEECCCccc
Confidence 34567899999999999999999999887664444433 2222 22333445567899999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
|...+..+++.+|++++|+|+.+.. ......|+..+... ++|+++|+||+|+...+. ....+...+....
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~---- 159 (201)
T 3oes_A 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE-VQAVEGKKLAESW---- 159 (201)
T ss_dssp TCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCC-SCHHHHHHHHHHH----
T ss_pred hHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccc-cCHHHHHHHHHHh----
Confidence 9888888999999999999988642 23334555555443 689999999999874331 1122233333222
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.++++++||++|. |++++++.|.+.+..
T Consensus 160 ---~~~~~~~Sa~~~~----------~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 160 ---GATFMESSARENQ----------LTQGIFTKVIQEIAR 187 (201)
T ss_dssp ---TCEEEECCTTCHH----------HHHHHHHHHHHHHHH
T ss_pred ---CCeEEEEeCCCCC----------CHHHHHHHHHHHHHh
Confidence 3479999999999 999999999887643
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.82 E-value=3.8e-20 Score=168.69 Aligned_cols=161 Identities=20% Similarity=0.236 Sum_probs=101.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC---CeeEEEEeCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGH 162 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~~~i~liDtPG~ 162 (512)
.....+|+++|++|+|||||+++|++........++. +.+. ....+.+. ...+.+|||||+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI--------------GADF--LTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---C--------------CCSC--EEEEECCSSSCCEEEEEECCC--
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc--------------ceEE--EEEEEEEcCCcEEEEEEEECCCC
Confidence 3467899999999999999999999876543333222 2222 22233333 357899999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH-------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHH
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIE 234 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~-------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~ 234 (512)
.+|...+..+++.+|++++|+|+.+... .....|+..+.. .++|+++|+||+|+.........+++.++...
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~ 148 (182)
T 1ky3_A 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS 148 (182)
T ss_dssp --------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH
T ss_pred hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh
Confidence 9998888888999999999999887532 333445544443 46799999999998643211122333333321
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
. ..++++++||++|. |++++++.|.+.+
T Consensus 149 ~------~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 L------GDIPLFLTSAKNAI----------NVDTAFEEIARSA 176 (182)
T ss_dssp T------TSCCEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred c------CCCeEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 1 24579999999999 9999999988754
No 71
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=171.60 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=113.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.+...+|+++|++|+|||||+++|+..........++ +.......+.+++ ..+.||||||+.
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~----------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI----------------GVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCc----------------ceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 3457899999999999999999999876543222221 1222233445555 589999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
+|...+..+++.+|++|+|+|+++.. ......|+..+.. .++|+++|+||+|+...+ ....+++.++....
T Consensus 90 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~---- 164 (201)
T 2hup_A 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR-EVSLAEAQSLAEHY---- 164 (201)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHT----
T ss_pred hHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccc-ccCHHHHHHHHHHc----
Confidence 99999999999999999999988742 2344566666655 358999999999997532 11233444444333
Q ss_pred ccccc-ceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 240 EQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 240 ~~~~~-pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.+ +++++||++|. |++++++.|.+.+.
T Consensus 165 ---~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 165 ---DILCAIETSAKDSS----------NVEEAFLRVATELI 192 (201)
T ss_dssp ---TCSEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred ---CCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23 68999999999 99999999988764
No 72
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=4.7e-20 Score=172.35 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=114.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.+...+|+++|++|+|||||+++|+..........++ + .+.....+.+++ ..+.||||||+.
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~--------------~--~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI--------------G--VDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCC--------------S--EEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc--------------c--eeEEEEEEEECCEEEEEEEEECCCcH
Confidence 4567899999999999999999999876543333322 2 223333444554 578999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
+|...+..+++.+|++++|+|+++... .....|+..+... ++|+++|+||+|+...+ ....++........
T Consensus 87 ~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~---- 161 (201)
T 2ew1_A 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR-EVSQQRAEEFSEAQ---- 161 (201)
T ss_dssp GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-SSCHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-ccCHHHHHHHHHHc----
Confidence 999888889999999999999887432 2334555555543 57999999999986432 11122233332222
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.++++.|.+.+.
T Consensus 162 ---~~~~~~~Sa~~g~----------gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 162 ---DMYYLETSAKESD----------NVEKLFLDLACRLI 188 (201)
T ss_dssp ---TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ---CCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3479999999999 99999999887653
No 73
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.82 E-value=1.1e-19 Score=162.83 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=109.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCCh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFG 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~ 166 (512)
..+|+++|++|+|||||+++|++........++. +.. . ...+...+ ..+.+|||||+.++.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~-~--~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI--------------EDF-Y--RKEIEVDSSPSVLEILDTAGTEQFA 65 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC--------------CEE-E--EEEEEETTEEEEEEEEECCCTTCCH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCc--------------cee-E--EEEEEECCEEEEEEEEECCCchhhH
Confidence 4689999999999999999999876554333332 111 1 22233343 458999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..++..+|++++|+|+.+... .....++..+.. .++|+++|+||+|+...+ .....+..+.....
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~------ 138 (167)
T 1kao_A 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER-EVSSSEGRALAEEW------ 138 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHH------
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccc-cCCHHHHHHHHHHh------
Confidence 999999999999999999887422 233444444443 368999999999986432 11122333333332
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.|.+.+
T Consensus 139 -~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 164 (167)
T 1kao_A 139 -GCPFMETSAKSKT----------MVDELFAEIVRQM 164 (167)
T ss_dssp -TSCEEEECTTCHH----------HHHHHHHHHHHHH
T ss_pred -CCCEEEecCCCCc----------CHHHHHHHHHHHH
Confidence 3479999999999 9999999988754
No 74
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.82 E-value=7e-20 Score=168.70 Aligned_cols=160 Identities=17% Similarity=0.153 Sum_probs=113.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-----------CeeE
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-----------DTKI 154 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-----------~~~i 154 (512)
.+...+|+|+|++|+|||||+++|++........++. +.+... ...+... ...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 72 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTV--------------GIDFRE-KRVVYRANGPDGAVGRGQRIHL 72 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--------------SEEEEE-EEEEECTTSCCCSSCCCEEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCccccc--------------ceeeee-EEEEEecCCcccccccCcEEEE
Confidence 3457899999999999999999999876543333322 222210 1222333 3589
Q ss_pred EEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhH
Q 010392 155 NIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTF 229 (512)
Q Consensus 155 ~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~ 229 (512)
.||||||+.+|...+..+++.+|++|+|+|+.+... .....++..+.. .++|+++|+||+|+...+ ....+++.
T Consensus 73 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~ 151 (195)
T 3bc1_A 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQR-AVKEEEAR 151 (195)
T ss_dssp EEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGC-CSCHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-ccCHHHHH
Confidence 999999999999999999999999999999887533 233456665554 468999999999986532 11223334
Q ss_pred HHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 230 ELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 230 ~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+..... .++++++||++|. |++++++.|.+.+
T Consensus 152 ~~~~~~-------~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 152 ELAEKY-------GIPYFETSAANGT----------NISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHH-------TCCEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHc-------CCCEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 433333 2479999999999 9999999988765
No 75
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.82 E-value=3.9e-20 Score=169.68 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=113.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
+...+|+++|++|+|||||+++|++........++. +.......+.+++ ..+.||||||+.+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI----------------GVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCS----------------EEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc----------------ceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 456899999999999999999999876654433322 2233333444554 5889999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
+...+..++..+|++++|+|+++... .....|+..+.. .++|+++|+||+|+...+. ....+..+.....
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~----- 145 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE-VTFLEASRFAQEN----- 145 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHHT-----
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc-cCHHHHHHHHHHc-----
Confidence 99999999999999999999887432 233445544443 3689999999999964321 1123333333222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.+.+.+
T Consensus 146 --~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 171 (186)
T 2bme_A 146 --ELMFLETSALTGE----------NVEEAFVQCARKI 171 (186)
T ss_dssp --TCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred --CCEEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 3579999999999 9999999888765
No 76
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.82 E-value=2.3e-20 Score=170.60 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=111.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|++|+|||||+++|+.........++. +.+. ...+...+ ..+.||||||+.+|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI--------------ENTF---TKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTC--------------CEEE---EEEEEETTEEEEEEEEECCCCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCc--------------cccE---EEEEEECCEEEEEEEEeCCCchhh
Confidence 46799999999999999999999876654444333 2222 22334444 57799999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
...+..+++.+|++++|+|+.+.. ......|+..+.. .++|+++|+||+|+...+ ....++..++....
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~----- 141 (181)
T 3t5g_A 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER-VISYEEGKALAESW----- 141 (181)
T ss_dssp CCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTC-CSCHHHHHHHHHHT-----
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcc-eecHHHHHHHHHHh-----
Confidence 877888899999999999988732 2233344444433 368999999999986433 12233344443333
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.++++++||++|. |+.++++.+.+.+..
T Consensus 142 --~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 142 --NAAFLESSAKENQ----------TAVDVFRRIILEAEK 169 (181)
T ss_dssp --TCEEEECCTTSHH----------HHHHHHHHHHHHHHT
T ss_pred --CCcEEEEecCCCC----------CHHHHHHHHHHHHHH
Confidence 3479999999999 999999999887643
No 77
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.6e-19 Score=164.53 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=106.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcC-ccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD-NQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~-~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
+...+|+++|++|+|||||+++|++....... .+++ +.+. ....+...+ ..+.+|||||+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~--------------~~~~--~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV--------------GIDF--RNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCC--------------SCEE--EEEEEEETTEEEEEEEEECCCC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCce--------------eeEE--EEEEEEECCEEEEEEEEeCCCcH
Confidence 45689999999999999999999987664221 1211 2222 222334444 478999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
+|...+..++..+|++++|+|+.+... .....|+..+.. .++|+++|+||+|+...+. ...++..+.....
T Consensus 72 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~---- 146 (180)
T 2g6b_A 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV-VKREDGEKLAKEY---- 146 (180)
T ss_dssp -------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC-SCHHHHHHHHHHH----
T ss_pred HHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccc-cCHHHHHHHHHHc----
Confidence 999888889999999999999887532 333455555555 4689999999999975431 1222333333322
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |++++++.+.+.+.
T Consensus 147 ---~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 147 ---GLPFMETSAKTGL----------NVDLAFTAIAKELK 173 (180)
T ss_dssp ---TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ---CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3469999999999 99999999987764
No 78
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.82 E-value=2.1e-19 Score=167.59 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=114.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.....+|+|+|++|+|||||+++|++........++. +.+. ...+.+.+ ..+.||||||+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK--------------ADSY---RKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTC--------------CEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc--------------ceEE---EEEEEECCEEEEEEEEcCCChh
Confidence 3457899999999999999999999876544333332 2111 12334444 478999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
+|...+..++..+|++++|+|+.+.. ......|+..+... ++|+++|+||+|+...+ ....+++.+.....
T Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~--- 149 (206)
T 2bov_A 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR-QVSVEEAKNRAEQW--- 149 (206)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHH---
T ss_pred hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccc-cccHHHHHHHHHHh---
Confidence 99999999999999999999988742 22334555555443 68999999999997532 12233444444333
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |++++++.|.+.+.
T Consensus 150 ----~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 150 ----NVNYVETSAKTRA----------NVDKVFFDLMREIR 176 (206)
T ss_dssp ----TCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred ----CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3469999999999 99999999987763
No 79
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.82 E-value=8.4e-20 Score=165.45 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=102.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC-
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD- 164 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~- 164 (512)
...+|+++|++|+|||||+++|++......... .|.+.... .+.+++ ..+.+|||||+..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~---------------~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~ 65 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ---------------LGEDVYER--TLTVDGEDTTLVVVDTWEAEKL 65 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCC---------------SSSSEEEE--EEEETTEEEEEEEECCC-----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCc---------------cccceeEE--EEEECCEEEEEEEEecCCCCcc
Confidence 457899999999999999999997654322211 14443332 233443 4789999999988
Q ss_pred -ChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 165 -FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 165 -~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
+......+++.+|++++|+|+++.. ......|+..+... ++|+++|+||+|+...+. ...++........
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~-v~~~~~~~~~~~~--- 141 (175)
T 2nzj_A 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCRE-VSVEEGRACAVVF--- 141 (175)
T ss_dssp --CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCC-SCHHHHHHHHHHH---
T ss_pred chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccc-cCHHHHHHHHHHc---
Confidence 4555666778899999999988642 23344566666654 689999999999975431 1122233322222
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.|.+.+
T Consensus 142 ----~~~~~~~Sa~~g~----------gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 142 ----DCKFIETSATLQH----------NVAELFEGVVRQL 167 (175)
T ss_dssp ----TSEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred ----CCeEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 3479999999999 9999999998765
No 80
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.82 E-value=9.6e-20 Score=165.52 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=112.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
....+|+++|++|+|||||+++|++........++. +.+ .....+.+++ ..+.||||||+.+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI--------------GVE--FLNKDLEVDGHFVTMQIWDTAGQER 68 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CC--------------SEE--EEEEEEEETTEEEEEEEEECCCCGG
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--------------eee--EEEEEEEECCEEEEEEEEeCCCchh
Confidence 356899999999999999999999876543322222 222 2233444555 5899999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH-------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~-------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
+...+..+++.+|++++|+|+.+... .....|+..+.. .++|+++|+||+|+... ....+++.+.....
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~- 145 (177)
T 1wms_A 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEEAQAWCRDN- 145 (177)
T ss_dssp GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHHHHHHHHHT-
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc--ccCHHHHHHHHHhc-
Confidence 99988889999999999999887532 223344444433 46799999999998732 22233344433211
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
..++++++||++|. |+.++++.+.+.+
T Consensus 146 -----~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 172 (177)
T 1wms_A 146 -----GDYPYFETSAKDAT----------NVAAAFEEAVRRV 172 (177)
T ss_dssp -----TCCCEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred -----CCceEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 24579999999999 9999999998765
No 81
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.82 E-value=1.3e-19 Score=164.71 Aligned_cols=161 Identities=21% Similarity=0.211 Sum_probs=114.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC---eeEEEEeCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND---TKINIIDTPGHS 163 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~---~~i~liDtPG~~ 163 (512)
.+..+|+++|++|+|||||+++|++........+++ |.+ .....+.+.+ ..+.+|||||+.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~--~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI--------------GLD--FFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTT--------------TSS--EEEEEEEETTTEEEEEEEEECTTCC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCce--------------eEE--EEEEEEEeCCCCEEEEEEEECCCCc
Confidence 356889999999999999999999876532221211 222 2233445554 689999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc-----CCc-EEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF-----GHA-VVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~-----~~p-~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
+|...+..++..+|++++|+|+++... .....|+..+... +.| +++|+||+|+...+. ...++..++....
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~-~~~~~~~~~~~~~- 145 (178)
T 2hxs_A 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT-IKPEKHLRFCQEN- 145 (178)
T ss_dssp TTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS-SCHHHHHHHHHHH-
T ss_pred cccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccc-cCHHHHHHHHHHc-
Confidence 999999999999999999999987432 3334555555542 566 799999999965321 1122333333322
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.++++++||++|. |+.++++.|.+.+...
T Consensus 146 ------~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 146 ------GFSSHFVSAKTGD----------SVFLCFQKVAAEILGI 174 (178)
T ss_dssp ------TCEEEEECTTTCT----------THHHHHHHHHHHHTTC
T ss_pred ------CCcEEEEeCCCCC----------CHHHHHHHHHHHHHhh
Confidence 3478999999999 9999999999877543
No 82
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.82 E-value=1.4e-20 Score=172.23 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=89.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
+...+|+++|++|+|||||+++|+.........+ +++.+.....+.+++ ..+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFIS----------------TIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHH----------------HHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----------------cccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 4578999999999999999999987654322222 223333334455555 6899999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|...+..+++.+|++|+|+|+++.. ......|+..+... ++|+++|+||+|+...+ ....+++.++....
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~----- 143 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR-QVSKERGEKLALDY----- 143 (183)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC-CSCHHHHHHHHHHH-----
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC-cCCHHHHHHHHHHc-----
Confidence 9888888899999999999988743 23444566666654 68999999999997543 11223334433332
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |++++++.|.+.+.
T Consensus 144 --~~~~~~~Sa~~~~----------~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 144 --GIKFMETSAKANI----------NVENAFFTLARDIK 170 (183)
T ss_dssp --TCEEEECCC---C----------CHHHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3479999999999 99999999887653
No 83
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.82 E-value=2.2e-19 Score=164.33 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=112.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|+.|+|||||+++|+.........++. +.+. ...+.+.+ ..+.||||||+.++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK--------------ADSY---RKKVVLDGEEVQIDILDTAGQEDY 79 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTC--------------CEEE---EEEEEETTEEEEEEEEECCCTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcc--------------ceEE---EEEEEECCEEEEEEEEECCCCccc
Confidence 46899999999999999999999876543333332 1111 12233444 47899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
...+..++..+|++++|+|+.+... .....|+..+... ++|+++|+||+|+...+. ...+++.+.....
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~----- 153 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQW----- 153 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC-SCHHHHHHHHHHT-----
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc-cCHHHHHHHHHHc-----
Confidence 9999999999999999999887422 2334444444432 689999999999865321 2233444444332
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.|.+.+
T Consensus 154 --~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 179 (187)
T 2a9k_A 154 --NVNYVETSAKTRA----------NVDKVFFDLMREI 179 (187)
T ss_dssp --TCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred --CCeEEEeCCCCCC----------CHHHHHHHHHHHH
Confidence 3479999999999 9999999998765
No 84
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.82 E-value=5.9e-20 Score=169.38 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=109.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
.+..+|+++|++|+|||||+++|++.........+. +.+... ..+.+++ ..+.||||||+.+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI--------------GVDFRE--RAVDIDGERIKIQLWDTAGQER 81 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCC--------------SCCEEE--EEEEETTEEEEEEEEECCCSHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc--------------ceEEEE--EEEEECCEEEEEEEEECCCchh
Confidence 356899999999999999999999876654333322 222222 3334444 5899999999998
Q ss_pred Ch-HHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 165 FG-GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 165 ~~-~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
|. ..+..+++.+|++|+|+|+++... .....|+..+.. .++|+++|+||+|+...+. ...++..++....
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~--- 157 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ-VPTDLAQKFADTH--- 157 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC-SCHHHHHHHHHHT---
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce-eCHHHHHHHHHHc---
Confidence 88 778889999999999999887422 233445555544 3689999999999965321 1122233332222
Q ss_pred ccccccceeeeccccC---ccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 239 DEQCDFQAIYASGIQG---KAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g---~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++| . |+.++++.|.+.++
T Consensus 158 ----~~~~~~~Sa~~~~~~~----------~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 158 ----SMPLFETSAKNPNDND----------HVEAIFMTLAHKLK 187 (189)
T ss_dssp ----TCCEEECCSSSGGGGS----------CHHHHHHHHC----
T ss_pred ----CCEEEEEeCCcCCccc----------CHHHHHHHHHHHHh
Confidence 347999999999 7 89999999887764
No 85
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=6.9e-20 Score=169.19 Aligned_cols=160 Identities=22% Similarity=0.209 Sum_probs=116.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|++|+|||||+++|+.........++. +.+.......+......+.||||||+.+|..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 79 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATI--------------GVDFKVKTISVDGNKAKLAIWDTAGQERFRT 79 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCC--------------SEEEEEEEEEETTEEEEEEEEEECSSGGGCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCcc--------------ceEEEEEEEEECCeEEEEEEEeCCCchhhhh
Confidence 45789999999999999999999876654333332 3343333333333346899999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..+++.+|++|+|+|+.+... .....|+..+... ++|+++|+||+|+.... ...++..+.....
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~------- 150 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE--VDRNEGLKFARKH------- 150 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC--SCHHHHHHHHHHT-------
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc--cCHHHHHHHHHHc-------
Confidence 99999999999999999887532 3334555666543 57999999999995422 1223333333332
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.++++++||++|. |++++++.|.+.+..
T Consensus 151 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 151 SMLFIEASAKTCD----------GVQCAFEELVEKIIQ 178 (195)
T ss_dssp TCEEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred CCEEEEecCCCCC----------CHHHHHHHHHHHHHh
Confidence 3468999999999 999999999987653
No 86
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=1e-19 Score=190.24 Aligned_cols=160 Identities=28% Similarity=0.365 Sum_probs=115.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC--
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD-- 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~-- 164 (512)
....+|+++|++|+|||||+|+|++....... ...|+|.+.....+.+++..++||||||+.+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS---------------NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 237 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------------CCEEEEETTEEEEETTHHHHTCBT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeec---------------CCCCceeeeeEEEEEECCeEEEEEECCCcCcCc
Confidence 35689999999999999999999986543211 1236777777778889999999999999843
Q ss_pred --------ChHH-HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc---hhhHhhhHHHH
Q 010392 165 --------FGGE-VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP---DYVINSTFELF 232 (512)
Q Consensus 165 --------~~~~-~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~---~~~~~~~~~~~ 232 (512)
|... ...+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...+. ++..+++.+.+
T Consensus 238 ~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 238 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF 317 (436)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhc
Confidence 3222 23578899999999999999999999999989889999999999999976432 12223333332
Q ss_pred HHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 233 ~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
... ..+|++++||++|. |+.++++.+.+.
T Consensus 318 ~~~------~~~~~~~~SA~tg~----------~v~~l~~~i~~~ 346 (436)
T 2hjg_A 318 QFL------DYAPILFMSALTKK----------RIHTLMPAIIKA 346 (436)
T ss_dssp GGG------TTSCEEECCTTTCT----------TGGGHHHHHHHH
T ss_pred ccC------CCCCEEEEecccCC----------CHHHHHHHHHHH
Confidence 211 24589999999999 777666655543
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.82 E-value=9.7e-20 Score=164.39 Aligned_cols=158 Identities=21% Similarity=0.182 Sum_probs=115.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|++|+|||||+++|+...... ..+ |+......+.+++..+.+|||||+.++..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~------------------t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 66 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIP------------------TIGFNVETVTYKNLKFQVWDLGGLTSIRP 66 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCC------------------CSSEEEEEEEETTEEEEEEEECCCGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCC------------------cCccceEEEEECCEEEEEEECCCChhhhH
Confidence 46789999999999999999998865432 111 22233345667789999999999999998
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+..... ..++.+.+..... ...
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~ 141 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT---SSEMANSLGLPAL--KDR 141 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGC--TTS
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---HHHHHHHhCchhc--cCC
Confidence 8888999999999999988752 3344455555443 4789999999999976431 2223333221111 123
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |++++++.|.+.++
T Consensus 142 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 142 KWQIFKTSATKGT----------GLDEAMEWLVETLK 168 (171)
T ss_dssp CEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ceEEEECcCCCCc----------CHHHHHHHHHHHHh
Confidence 5689999999999 99999999988764
No 88
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.81 E-value=7.5e-20 Score=171.05 Aligned_cols=159 Identities=17% Similarity=0.218 Sum_probs=114.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
+...+|+|+|++|+|||||+++|++........+++ +.+. ....+.+.+ ..+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI--------------GVDF--KIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSS--------------CCCE--EEEEEEETTEEEEEEEECCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ccee--EEEEEEECCEEEEEEEEeCCChHH
Confidence 456899999999999999999999876654333322 2222 223344444 4799999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|...+..+++.+|++|+|+|+.+... .....|+..+... ++|+++|+||+|+...+. ...++..++....
T Consensus 70 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~----- 143 (206)
T 2bcg_Y 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV-VEYDVAKEFADAN----- 143 (206)
T ss_dssp TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC-SCHHHHHHHHHHT-----
T ss_pred HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHHHHc-----
Confidence 98888889999999999999887532 3334555555543 589999999999975431 1122333333222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |++++++.|.+.+.
T Consensus 144 --~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 144 --KMPFLETSALDST----------NVEDAFLTMARQIK 170 (206)
T ss_dssp --TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 99999998887653
No 89
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.81 E-value=6.8e-20 Score=169.63 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=110.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.....+|+++|+.|+|||||+++|++........++. +.+ .....+.+++ ..+.||||||+.
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~--------------~~~--~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV--------------GVD--FKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCT--------------TEE--EEEEEEEETTEEEEEEEEEECCSG
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCcc--------------cee--EEEEEEEECCeEEEEEEEeCCCcH
Confidence 3456889999999999999999998765443222221 222 3333444544 578999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCch-hHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~-~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
+|...+..++..+|++|+|+|+++.... ....|+..+... ++|+++|+||+|+...+ ....++..++...+
T Consensus 87 ~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~-~v~~~~~~~~~~~~---- 161 (192)
T 2il1_A 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR-EITRQQGEKFAQQI---- 161 (192)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHTS----
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc-ccCHHHHHHHHHhc----
Confidence 9999999999999999999999875332 334455555543 68999999999986532 11122333332221
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
..++++++||++|. |++++++.|.+.+
T Consensus 162 --~~~~~~~~SA~~g~----------gi~~l~~~l~~~i 188 (192)
T 2il1_A 162 --TGMRFCEASAKDNF----------NVDEIFLKLVDDI 188 (192)
T ss_dssp --TTCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred --CCCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 13578999999999 9999999988754
No 90
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.81 E-value=1.9e-19 Score=162.51 Aligned_cols=153 Identities=19% Similarity=0.275 Sum_probs=108.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh--
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG-- 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~-- 166 (512)
..+|+++|++|+|||||+++|++........ .++|+......+.+.+..+.+|||||+.+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 66 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNW----------------PGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN 66 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC---------------------CCCCCEEEEEETTEEEEEEECCCCSCSSSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCC----------------CCcceeeeEEEEEECCcEEEEEECCCcccCCCc
Confidence 4689999999999999999998754322111 1344444455667778899999999998875
Q ss_pred ----HHHHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 167 ----GEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 167 ----~~~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
.....++. .+|++++|+|+.+ ......++..+.+.++|+++|+||+|+...+. +..+..++...+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~----- 137 (165)
T 2wji_A 67 SIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLG--IEIDVDKLEKIL----- 137 (165)
T ss_dssp SHHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTT--CCCCHHHHHHHH-----
T ss_pred chhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccC--hhhHHHHHHHHh-----
Confidence 23344554 7899999999876 23445567777777899999999999853211 111222222222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.+.+.+
T Consensus 138 --~~~~~~~SA~~~~----------~v~~l~~~l~~~~ 163 (165)
T 2wji_A 138 --GVKVVPLSAAKKM----------GIEELKKAISIAV 163 (165)
T ss_dssp --TSCEEECBGGGTB----------SHHHHHHHHHHHT
T ss_pred --CCCEEEEEcCCCC----------CHHHHHHHHHHHh
Confidence 2468999999999 9999999998765
No 91
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.81 E-value=8.1e-20 Score=168.87 Aligned_cols=168 Identities=18% Similarity=0.166 Sum_probs=109.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeee-EEEECCeeEEEEeCCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNT-SITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~-~~~~~~~~i~liDtPG~~~~ 165 (512)
....+|+++|++|+|||||++.|.+. ......+.... ...+.....+.+...... .+......+.||||||+.+|
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVS---LATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEE---EECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccc---cccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 45689999999999999999766543 32222111000 000000011222211111 22233467999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHH---------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE---------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~---------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
...+..+++.+|++|+|+|++++...+..+.+..+.. .++|+++|+||+|+... ...+++.+.+...
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~- 163 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA---LPVEMVRAVVDPE- 163 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC---CCHHHHHHHHCTT-
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc---cCHHHHHHHHHhc-
Confidence 9999999999999999999986644444443333322 36899999999999754 2233444444322
Q ss_pred CCcccccc-ceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 237 ATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 237 ~~~~~~~~-pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+ +++++||++|. |+.++++.|.+.+
T Consensus 164 ------~~~~~~~~Sa~~~~----------gv~~l~~~l~~~i 190 (198)
T 3t1o_A 164 ------GKFPVLEAVATEGK----------GVFETLKEVSRLV 190 (198)
T ss_dssp ------CCSCEEECBGGGTB----------THHHHHHHHHHHH
T ss_pred ------CCceEEEEecCCCc----------CHHHHHHHHHHHH
Confidence 33 79999999999 9999999988754
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.81 E-value=6.3e-20 Score=168.07 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=112.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.+..+|+++|+.|+|||||+++|++.... .... |+......+.+++..+.||||||+.++.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~------------------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 79 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP------------------TIGSNVEEIVINNTRFLMWDIGGQESLR 79 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCE-EEEC------------------CSSSSCEEEEETTEEEEEEEESSSGGGT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC-ccCC------------------cCceeeEEEEECCEEEEEEECCCCHhHH
Confidence 34678999999999999999999987541 1111 1112234556678999999999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..++..+|++++|+|+++. .......++..+.. .++|+++|+||+|+..... .+++.+.+..... ..
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~--~~ 154 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTSI--KD 154 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGC--CS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC---HHHHHHHhCcccc--cC
Confidence 8888899999999999998875 33445556655553 4789999999999975321 2233333211111 12
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
..++++++||++|. |++++++.|.+.
T Consensus 155 ~~~~~~~~Sa~~g~----------gi~~l~~~l~~~ 180 (181)
T 2h17_A 155 HQWHIQACCALTGE----------GLCQGLEWMMSR 180 (181)
T ss_dssp SCEEEEECBTTTTB----------THHHHHHHHHTC
T ss_pred CceEEEEccCCCCc----------CHHHHHHHHHhh
Confidence 35689999999999 999999998764
No 93
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=6.4e-20 Score=171.34 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=112.2
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~ 163 (512)
.....+|+|+|++|+|||||+++|++........+++ +.+ .....+... ...+.||||||+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~--~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI--------------GAD--FLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC--------------SEE--EEEEEEESSSCEEEEEEEEECSSG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc--------------cce--EEEEEEEECCEEEEEEEEeCCCcH
Confidence 3467899999999999999999999876654333322 222 222333333 3578999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH-------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~-------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~ 235 (512)
+|...+..++..+|++|+|+|+++... .....|+..+.. .++|+++|+||+|+.... ...+++......
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~- 145 (207)
T 1vg8_A 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ--VATKRAQAWCYS- 145 (207)
T ss_dssp GGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC--SCHHHHHHHHHH-
T ss_pred HHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc--cCHHHHHHHHHh-
Confidence 988888888999999999999987532 233344444433 368999999999997322 222333333321
Q ss_pred cCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 236 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
...++++++||++|. |+.++++.|.+.+.
T Consensus 146 -----~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 146 -----KNNIPYFETSAKEAI----------NVEQAFQTIARNAL 174 (207)
T ss_dssp -----TTSCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -----cCCceEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124579999999999 99999999987764
No 94
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.81 E-value=8.6e-20 Score=169.99 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=109.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
+..+|+++|++|+|||||+++|.+..... ..+ |+......+.+++..+.+|||||+.++..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~------------------t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 84 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVP------------------TLHPTSEELTIAGMTFTTFDLGGHIQARR 84 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------C------------------CCCCSCEEEEETTEEEEEEEECC----CC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCC------------------CCCceeEEEEECCEEEEEEECCCcHhhHH
Confidence 45689999999999999999997654321 111 22223346677889999999999999988
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC-----
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA----- 237 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~----- 237 (512)
.+..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+.... ..+++.+.+.....
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 161 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI---SEERLREMFGLYGQTTGKG 161 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC---CHHHHHHHHTCTTTCCCSS
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccC---CHHHHHHHhCccccccccc
Confidence 8888999999999999988753 3444556555543 368999999999997521 23344444432110
Q ss_pred -----CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 238 -----TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 238 -----~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
......++++++||++|. |+++++++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~l 197 (198)
T 1f6b_A 162 SVSLKELNARPLEVFMCSVLKRQ----------GYGEGFRWMAQYI 197 (198)
T ss_dssp CCCTTTCCSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred ccccccccCceEEEEEEECCCCC----------CHHHHHHHHHHhc
Confidence 001134689999999999 9999999998764
No 95
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.81 E-value=1.4e-19 Score=167.27 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=113.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
+..+|+++|++|+|||||+++|++..... ..+ |+......+.+++..+.+|||||+.++..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~------------------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 82 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQP------------------TWHPTSEELAIGNIKFTTFDLGGHIQARR 82 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCC------------------CCSCEEEEEEETTEEEEEEECCCSGGGTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-ccc------------------CCCCCeEEEEECCEEEEEEECCCCHHHHH
Confidence 34689999999999999999999875431 111 22223456677889999999999999888
Q ss_pred HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC----
Q 010392 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT---- 238 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~---- 238 (512)
.+..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+.... ..+++.+.+......
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 159 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV---SEAELRSALGLLNTTGSQR 159 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTCSSCCC---
T ss_pred HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC---CHHHHHHHhCCcccccccc
Confidence 8888889999999999998753 3344455555543 468999999999997522 223344433221100
Q ss_pred -ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 239 -DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 239 -~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.....++++++||++|. |++++++.|.+.+
T Consensus 160 ~~~~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~l 190 (190)
T 1m2o_B 160 IEGQRPVEVFMCSVVMRN----------GYLEAFQWLSQYI 190 (190)
T ss_dssp CCSSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred ccccceEEEEEeECCcCC----------CHHHHHHHHHhhC
Confidence 11235689999999999 9999999998653
No 96
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=166.46 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=115.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc-CCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA-KVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~-~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+..+|+++|+.|+|||||+++|++.. ....... |+......+.+++..+.||||||+.++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~------------------t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP------------------TIGFSIEKFKSSSLSFTVFDMSGQGRY 80 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC------------------CSSEEEEEEECSSCEEEEEEECCSTTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC------------------ccceeEEEEEECCEEEEEEECCCCHHH
Confidence 346789999999999999999998775 2222111 222334456677889999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
...+..++..+|++|+|+|+++.. ......++..+.. .++|+++|+||+|+.... ..+++.+.+.....
T Consensus 81 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~- 156 (190)
T 2h57_A 81 RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV---TSVKVSQLLCLENI- 156 (190)
T ss_dssp GGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC---CHHHHHHHHTGGGC-
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC---CHHHHHHHhChhhc-
Confidence 998889999999999999998742 3344455555544 378999999999997532 12333333321111
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
....++++++||++|. |++++++.|.+.+.
T Consensus 157 -~~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 157 -KDKPWHICASDAIKGE----------GLQEGVDWLQDQIQ 186 (190)
T ss_dssp -CSSCEEEEECBTTTTB----------THHHHHHHHHHHC-
T ss_pred -cCCceEEEEccCCCCc----------CHHHHHHHHHHHHH
Confidence 1125689999999999 99999999988764
No 97
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-19 Score=169.97 Aligned_cols=157 Identities=20% Similarity=0.224 Sum_probs=113.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
....+|+|+|++|+|||||+++|++........+++ +.......+.+.+ ..+.||||||+.+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----------------GIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCC----------------SCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc----------------cceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 456899999999999999999999876543332222 2223334455555 6799999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|...+..++..+|++++|+|+.+.. ......|+..+... ++|+++|+||+|+.... ...++..++....
T Consensus 82 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~----- 154 (213)
T 3cph_A 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV--VTADQGEALAKEL----- 154 (213)
T ss_dssp GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC--SCHHHHHHHHHHH-----
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc--cCHHHHHHHHHHc-----
Confidence 9888899999999999999988743 23334566655554 68999999999994321 1223333333332
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.|.+.+
T Consensus 155 --~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 180 (213)
T 3cph_A 155 --GIPFIESSAKNDD----------NVNEIFFTLAKLI 180 (213)
T ss_dssp --TCCEEECBTTTTB----------SSHHHHHHHHHHH
T ss_pred --CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 2479999999999 9999999888765
No 98
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.81 E-value=1.3e-19 Score=163.44 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=99.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCCh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFG 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~~ 166 (512)
..+|+++|++|+|||||+++|++.........+. +.......+.+.+ ..+.+|||||+.++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMEN----------------SEDTYERRIMVDKEEVTLIVYDIWEQGDAG 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCC----------------cCCeeeEEEEECCeEEEEEEEECCCccccc
Confidence 5689999999999999999998654432222111 1222222333443 578899999999887
Q ss_pred H-HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 167 G-EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 167 ~-~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
. ....++..+|++++|+|+++.. ......++..+... ++|+++|+||+|+...+ ....++..+.....
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~----- 139 (169)
T 3q85_A 66 GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR-EVSLEEGRHLAGTL----- 139 (169)
T ss_dssp ----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHT-----
T ss_pred hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcc-cCCHHHHHHHHHHc-----
Confidence 6 5566788899999999988732 23444566555553 68999999999987432 12223333333322
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.+.+.+
T Consensus 140 --~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 165 (169)
T 3q85_A 140 --SCKHIETSAALHH----------NTRELFEGAVRQI 165 (169)
T ss_dssp --TCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred --CCcEEEecCccCC----------CHHHHHHHHHHHH
Confidence 3478999999999 9999999998764
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.81 E-value=3.6e-19 Score=164.91 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=110.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.+..+|+++|++|+|||||+++|+...... . ..|+......+.+.+..+.+|||||+++|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~------------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-T------------------IPTIGFNVETVEYKNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-E------------------EEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-c------------------CCcCceeEEEEEECCEEEEEEECCCCHhHH
Confidence 356789999999999999999997654321 1 112223334567788999999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..++..+|++++|+|+++.. ......++..+.. .++|+++|+||+|+..... .+++.+.+..... ..
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~--~~ 162 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP---VSELTDKLGLQHL--RS 162 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGC--SS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC---HHHHHHHhCcccc--cC
Confidence 99999999999999999988753 2334455555544 2689999999999975421 2233332221111 12
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
..++++++||++|. |++++++.|.+.+.
T Consensus 163 ~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 163 RTWYVQATCATQGT----------GLYDGLDWLSHELS 190 (192)
T ss_dssp CCEEEEECBTTTTB----------THHHHHHHHHHHTT
T ss_pred CceEEEECcCCCcC----------CHHHHHHHHHHHHh
Confidence 35679999999999 99999999998764
No 100
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=9.1e-20 Score=176.84 Aligned_cols=150 Identities=21% Similarity=0.314 Sum_probs=114.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH--
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG-- 167 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~-- 167 (512)
++|+++|++|+|||||+|+|++....... ..|+|+......+.+++..+.||||||+.++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~----------------~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGN----------------WPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEE----------------CTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccC----------------CCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 68999999999999999999876421111 126777788888889999999999999988764
Q ss_pred --------HHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhhhHHHHHHhc
Q 010392 168 --------EVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFELFIELN 236 (512)
Q Consensus 168 --------~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~~ 236 (512)
....++ ..+|++|+|+|+++ ......++..+.+.++|+++|+||+|+...+ .....+.+.+. +
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~---l- 139 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESL---L- 139 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHH---H-
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHH---c-
Confidence 334455 67999999999887 3455566777778899999999999986432 11122222222 2
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.+|++++||++|. |+++|++.+.+.
T Consensus 140 ------g~~vi~~SA~~g~----------gi~el~~~i~~~ 164 (256)
T 3iby_A 140 ------GCSVIPIQAHKNI----------GIPALQQSLLHC 164 (256)
T ss_dssp ------CSCEEECBGGGTB----------SHHHHHHHHHTC
T ss_pred ------CCCEEEEECCCCC----------CHHHHHHHHHhh
Confidence 3589999999999 999999999876
No 101
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.81 E-value=6.7e-19 Score=157.44 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=110.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCCCh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFG 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~~~ 166 (512)
..+|+++|+.|+|||||+++|++........++. +... ...+... ...+.+|||||+.++.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~D~~G~~~~~ 65 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTI--------------EDSY---RKQVVIDGETCLLDILDTAGQEEYS 65 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTC--------------CEEE---EEEEEETTEEEEEEEEECCCCSSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCcc--------------ceEE---EEEEEECCEEEEEEEEECCCchhhh
Confidence 3689999999999999999999876543333322 1111 1222333 3468899999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..++..+|++++|+|+.+... .....++..+... ++|+++|+||+|+.... ...+++.++....
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~------ 137 (166)
T 2ce2_X 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART--VESRQAQDLARSY------ 137 (166)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC--SCHHHHHHHHHHH------
T ss_pred HHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc--cCHHHHHHHHHHc------
Confidence 999999999999999999886432 2334555555443 68999999999987522 2223333433333
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.|.+.+
T Consensus 138 -~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 138 -GIPYIETSAKTRQ----------GVEDAFYTLVREI 163 (166)
T ss_dssp -TCCEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred -CCeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 3479999999999 9999999998764
No 102
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.81 E-value=3.4e-19 Score=163.38 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=113.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|++|+|||||+++|++..... ..+ ..|. ....+.+++..+.+|||||+..|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~--------------t~g~----~~~~~~~~~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITP--------------TQGF----NIKSVQSQGFKLNVWDIGGQRKIR 74 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEE--------------ETTE----EEEEEEETTEEEEEEECSSCGGGH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccC--------------cCCe----EEEEEEECCEEEEEEECCCCHHHH
Confidence 457899999999999999999998653210 001 1122 233556678899999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..++..+|++++|+|+++.. ......++..+.. .++|+++|+||+|+..... .+++.+.+..... ..
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~--~~ 149 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---ASEIAEGLNLHTI--RD 149 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGGC--CS
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC---HHHHHHHhCchhc--cC
Confidence 99999999999999999988743 3334455554432 3689999999999976432 2233332211111 12
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
..++++++||++|. |+++++++|.+.+..
T Consensus 150 ~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 150 RVWQIQSCSALTGE----------GVQDGMNWVCKNVNA 178 (181)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHTC--
T ss_pred CceEEEEccCCCCC----------CHHHHHHHHHHHHHh
Confidence 34679999999999 999999999987753
No 103
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.81 E-value=9.5e-20 Score=168.69 Aligned_cols=161 Identities=19% Similarity=0.147 Sum_probs=114.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.....+|+++|++|+|||||+++|++........+++ +.+.. ..+...+ ..+.||||||++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~--------------~~~~~---~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV--------------FENFS---HVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS--------------EEEEE---EEEEETTEEEEEEEEEECCSG
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCee--------------eeeeE---EEEEECCEEEEEEEEECCCcH
Confidence 3456899999999999999999999887654444333 22221 1233333 457999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCchhH--HHHHHHHHHc--CCcEEEEEeccCCCCCC-chhhHhhhHHHHHHhcCC
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEF--GHAVVVVVNKIDRPSAR-PDYVINSTFELFIELNAT 238 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~~~--~~~l~~~~~~--~~p~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 238 (512)
+|...+..+++.+|++++|+|+++...... ..|+..+... ++|+++|+||+|+.... .....++..+....++..
T Consensus 83 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS
T ss_pred HHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC
Confidence 999888889999999999999887533222 3455555554 68999999999997532 122334444444443321
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+++++||++|. |+.++++.+.+.+.
T Consensus 163 ------~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 163 ------AYIEASSVAKI----------GLNEVFEKSVDCIF 187 (194)
T ss_dssp ------CEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred ------EEEEeecCCCC----------CHHHHHHHHHHHHH
Confidence 28999999999 99999999988763
No 104
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.81 E-value=3.4e-19 Score=164.39 Aligned_cols=160 Identities=18% Similarity=0.269 Sum_probs=114.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC---
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH--- 162 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~--- 162 (512)
....++|+++|+.|+|||||+++|++........ . .+.|..... ...+.++.+|||||+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~--------------~~~t~~~~~---~~~~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK-T--------------PGKTRSINF---YLVNSKYYFVDLPGYGYA 81 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS-S--------------CCCCCCEEE---EEETTTEEEEECCCBSSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccC-C--------------CCCccCeEE---EEECCcEEEEECCCCccc
Confidence 4456789999999999999999999876322111 1 133332221 222457899999994
Q ss_pred -------CCChHHHHHHHHhc---cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhhhHHH
Q 010392 163 -------SDFGGEVERILNMV---EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFEL 231 (512)
Q Consensus 163 -------~~~~~~~~~~~~~~---d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~~~~~ 231 (512)
..+...+..++..+ |++++|+|+..+.......++..+...++|+++|+||+|+.... .....+++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 161 (195)
T 3pqc_A 82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKV 161 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred cCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHH
Confidence 33555555666665 99999999998877777788888888899999999999997532 23333444444
Q ss_pred HHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 232 ~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+... ..++++++||++|. |+++++++|.+.++
T Consensus 162 ~~~~------~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 162 FSKY------GEYTIIPTSSVTGE----------GISELLDLISTLLK 193 (195)
T ss_dssp HHSS------CCSCEEECCTTTCT----------THHHHHHHHHHHHC
T ss_pred Hhhc------CCCceEEEecCCCC----------CHHHHHHHHHHHhh
Confidence 3321 13579999999999 99999999988764
No 105
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=6.8e-19 Score=163.17 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=112.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|++|+|||||+++|++........++. +.+.. ....+......+.||||||+.+|.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~ 70 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTI--------------EDTYR-QVISCDKSVCTLQITDTTGSHQFP 70 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCC--------------CEEEE-EEEEETTEEEEEEEEECCGGGSCH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcc--------------cccee-EEEEECCEEEEEEEEeCCChHHhH
Confidence 356899999999999999999999876543333322 11111 111122223578999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH-----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~-----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
..+..++..+|++++|+|+++.. ......++..+.. .++|+++|+||+|+..... ..++........
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~----- 143 (199)
T 2gf0_A 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREV--DTREAQAVAQEW----- 143 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSS--CHHHHHHHHHHH-----
T ss_pred HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcccc--CHHHHHHHHHHh-----
Confidence 99999999999999999988632 2333445544443 2679999999999975321 122233333222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.++++++||++|. |+.+++++|.+.+...
T Consensus 144 --~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 144 --KCAFMETSAKMNY----------NVKELFQELLTLETRR 172 (199)
T ss_dssp --TCEEEECBTTTTB----------SHHHHHHHHHHHCSSS
T ss_pred --CCeEEEEecCCCC----------CHHHHHHHHHHHHhhh
Confidence 3468999999999 9999999999987554
No 106
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.81 E-value=1.8e-19 Score=161.94 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=92.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|++|+|||||+++|++....... .. .+.+.. ....+......+.+|||||+.++...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~--------------~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EA--------------AGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC--------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cc--------------cccceE-EEEEECCEEEEEEEEECCCCccchhh
Confidence 468999999999999999999754332111 11 122322 11222223457899999999999999
Q ss_pred HHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHHc----CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccc
Q 010392 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (512)
Q Consensus 169 ~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (512)
+..++..+|++++|+|.++.. ......++..+... ++|+++|+||+|+...+. ...++........ .
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~ 137 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE-VSVDEGRACAVVF-------D 137 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCC-SCHHHHHHHHHHT-------T
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccc-cCHHHHHHHHHHh-------C
Confidence 999999999999999988642 23445566666554 689999999999975431 1122222222222 3
Q ss_pred cceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 244 ~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
++++++||++|. |++++++.+.+.+
T Consensus 138 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 162 (166)
T 3q72_A 138 CKFIETSAALHH----------NVQALFEGVVRQI 162 (166)
T ss_dssp CEEEECBGGGTB----------SHHHHHHHHHHHH
T ss_pred CcEEEeccCCCC----------CHHHHHHHHHHHH
Confidence 479999999999 9999999988754
No 107
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.80 E-value=5.5e-20 Score=167.93 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=106.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|++|+|||||+++|+...+.....+++. .... ....+......+.||||||+.+|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~--------------~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF--------------DNFS-ANVVVNGATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------CB-CCCC-------CEEECCCC-CTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeee--------------eeEE-EEEEECCEEEEEEEEECCCChhhh
Confidence 3567899999999999999999998765433333221 0110 011122334567899999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCch-hHH-HHHHHHHHc--CCcEEEEEeccCCCCCCch---------hhHhhhHHHHH
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMP-QTR-FVLKKALEF--GHAVVVVVNKIDRPSARPD---------YVINSTFELFI 233 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~-~~~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~~---------~~~~~~~~~~~ 233 (512)
..+..++..+|++++|+|+++.... ... .|+..+... ++|+++|+||+|+...+.. ...++..++..
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~ 150 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK 150 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH
Confidence 8888899999999999998874332 222 455556554 7899999999998654211 01223333332
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
..+. .+++++||++|. |++++++.|.+.+..|
T Consensus 151 ~~~~------~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 151 LIGA------PAYIECSSKSQE----------NVKGVFDAAIRVVLQP 182 (182)
T ss_dssp HHTC------SEEEECCTTTCT----------THHHHHHHHHHHHSCC
T ss_pred HcCC------CEEEEEECCCCC----------CHHHHHHHHHHHHhcC
Confidence 2221 368999999999 9999999999876543
No 108
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.80 E-value=4.8e-19 Score=166.56 Aligned_cols=162 Identities=20% Similarity=0.227 Sum_probs=107.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC---CeeEEEEeCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGHS 163 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~~~i~liDtPG~~ 163 (512)
....+|+++|++|+|||||+++|++..+.....+. + .....+.++ +..+.||||||+.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-----------------~--~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-----------------T--DSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-----------------S--CEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-----------------c--eeeEEEEecCCCccEEEEEECCCCh
Confidence 35678999999999999999999987654332211 1 112224455 5789999999999
Q ss_pred CChH-HHHHHHHhccEEEEEEeCCCC--CchhHHHHHHHH-H-----HcCCcEEEEEeccCCCCCC-chhhHhhhHHHHH
Q 010392 164 DFGG-EVERILNMVEGVLLVVDSVEG--PMPQTRFVLKKA-L-----EFGHAVVVVVNKIDRPSAR-PDYVINSTFELFI 233 (512)
Q Consensus 164 ~~~~-~~~~~~~~~d~~llvida~~g--~~~~~~~~l~~~-~-----~~~~p~ivviNK~Dl~~~~-~~~~~~~~~~~~~ 233 (512)
+|.. .+..+++.+|++|+|+|+.+. .......+|..+ . ..++|+++|+||+|+.... .....+.+.+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 66 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 9987 677889999999999998861 111222333322 2 2268999999999997643 3344444444333
Q ss_pred Hh-------------------cCC-------cccc--ccceeeeccccC------ccCCCCCCcCCCchhhHHHHHHh
Q 010392 234 EL-------------------NAT-------DEQC--DFQAIYASGIQG------KAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 234 ~~-------------------~~~-------~~~~--~~pvi~~Sa~~g------~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.+ ... .... .++++++||++| . |+++++++|.+.
T Consensus 146 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~----------gv~~lf~~l~~~ 213 (214)
T 2fh5_B 146 TLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSA----------DIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CC----------BCHHHHHHHHHH
T ss_pred HHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccccc----------ChHHHHHHHHHh
Confidence 10 000 0011 578999999999 7 999999998765
No 109
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=1e-19 Score=168.37 Aligned_cols=160 Identities=17% Similarity=0.154 Sum_probs=113.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|+.|+|||||+++|++..+.....+++ +... ...+.+.+ ..+.||||||+.+|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~i~D~~G~~~~ 79 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV--------------FDHY---AVSVTVGGKQYLLGLYDTAGQEDY 79 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSS--------------CCCE---EEEEESSSCEEEEEEECCCCSSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ccee---EEEEEECCEEEEEEEEECCCCcch
Confidence 56799999999999999999999876543333332 1111 11233333 67899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHH-HHHHHHHHc--CCcEEEEEeccCCCCCCc-----------hhhHhhhHH
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTR-FVLKKALEF--GHAVVVVVNKIDRPSARP-----------DYVINSTFE 230 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~-----------~~~~~~~~~ 230 (512)
...+..+++.+|++++|+|+++... .... .|+..+... ++|+++|+||+|+..... ....++..+
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 80 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence 9888888999999999999887532 2333 566666665 789999999999975320 011222333
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
+...++. .+++++||++|. |++++++.|.+.+..
T Consensus 160 ~~~~~~~------~~~~~~Sa~~g~----------gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 160 LAKEIGA------CCYVECSALTQK----------GLKTVFDEAIIAILT 193 (194)
T ss_dssp HHHHHTC------SCEEECCTTTCT----------THHHHHHHHHHHHHC
T ss_pred HHHHcCC------cEEEEeeCCCCC----------CHHHHHHHHHHHHhc
Confidence 3322221 268999999999 999999999886543
No 110
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.80 E-value=7.9e-20 Score=173.04 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=116.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
+....+|+++|.+|+|||||+++|+..........+. |++.......+...+..+.||||||+.+|
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL--------------GVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTT--------------TEEEEEEEEEETTEEEEEEEEEECSGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--------------ceeEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 4457899999999999999999977654432222222 55665555555555678999999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
...+..+++.+|++++|+|+++... .....|+..+... ++|+++|+||+|+....... +........
T Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~~~------- 147 (221)
T 3gj0_A 78 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA---KSIVFHRKK------- 147 (221)
T ss_dssp SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG---GGCCHHHHH-------
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH---HHHHHHHHc-------
Confidence 9888999999999999999987533 3334555555554 78999999999997543222 222222221
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.++++.|.+.+.
T Consensus 148 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 148 NLQYYDISAKSNY----------NFEKPFLWLARKLI 174 (221)
T ss_dssp TCEEEECBGGGTB----------TTTHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3479999999999 99999999988763
No 111
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.80 E-value=5.1e-19 Score=162.36 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=108.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|++|+|||||+++|++........++. .......+...+ ..+.||||||+.++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-----------------EDSYRKQVVIDGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-----------------CEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-----------------hheEEEEEEECCcEEEEEEEECCCcHHH
Confidence 35789999999999999999999876544433332 111122333444 45788999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
...+..++..+|++++|+|+.+... .....++..+.. .++|+++|+||+|+.... ...+++.++....
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~--~~~~~~~~~~~~~----- 138 (189)
T 4dsu_A 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT--VDTKQAQDLARSY----- 138 (189)
T ss_dssp CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS--SCHHHHHHHHHHH-----
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc--cCHHHHHHHHHHc-----
Confidence 9999999999999999999887422 233445555544 368999999999997432 1222333333332
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.++++.|.+.+.
T Consensus 139 --~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 139 --GIPFIETSAKTRQ----------GVDDAFYTLVREIR 165 (189)
T ss_dssp --TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3479999999999 99999999988763
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.80 E-value=3.1e-19 Score=162.36 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=108.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|.+|+|||||+++|++........ ..++|.......+.+++..+.+|||||+.++...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 68 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTD---------------IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE 68 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS---------------STTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeC---------------CCCceeceeeEEEEECCeEEEEEECCCcccchhH
Confidence 3579999999999999999999765321111 1133444444566777888999999999765321
Q ss_pred --------HHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC
Q 010392 169 --------VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (512)
Q Consensus 169 --------~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~ 237 (512)
...+++.+|++++|+|+++........++..+... ++|+++|+||+|+.......
T Consensus 69 ~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-------------- 134 (172)
T 2gj8_A 69 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM-------------- 134 (172)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE--------------
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhh--------------
Confidence 22467889999999999876544455666666554 58999999999985422110
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
......+++++||++|. |++++++.|.+.+..
T Consensus 135 -~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 135 -SEVNGHALIRLSARTGE----------GVDVLRNHLKQSMGF 166 (172)
T ss_dssp -EEETTEEEEECCTTTCT----------THHHHHHHHHHHC--
T ss_pred -hhccCCceEEEeCCCCC----------CHHHHHHHHHHHhhh
Confidence 00123579999999999 999999999988754
No 113
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.80 E-value=6.7e-20 Score=170.91 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=107.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
+...+|+|+|+.|+|||||+++|++........++. +.+. ....+...+ ..+.||||||+.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~--------------~~~~--~~~~~~~~~~~~~l~l~Dt~G~~~ 86 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI--------------GVEF--GSRVVNVGGKTVKLQIWDTAGQER 86 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------------------CCE--EEEEEEETTEEEEEEEECCTTHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcc--------------ccee--EEEEEEECCeeeEEEEEcCCCcHh
Confidence 457899999999999999999999765543332221 2222 223344444 6899999999988
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|...+..+++.+|++|+|+|+.+... .....|+..+... ++|+++|+||+|+...+. ....+..+.....
T Consensus 87 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~----- 160 (200)
T 2o52_A 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPERE-VTFLEASRFAQEN----- 160 (200)
T ss_dssp HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHHT-----
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccc-cCHHHHHHHHHHc-----
Confidence 88888889999999999999887432 3334555555443 689999999999864321 1122333333222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.|.+.+
T Consensus 161 --~~~~~~~SA~~g~----------gi~~l~~~l~~~i 186 (200)
T 2o52_A 161 --ELMFLETSALTGE----------NVEEAFLKCARTI 186 (200)
T ss_dssp --TCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred --CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3579999999999 9999999888765
No 114
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=5.5e-19 Score=185.72 Aligned_cols=164 Identities=27% Similarity=0.333 Sum_probs=120.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCC-----
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG----- 161 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG----- 161 (512)
....+|+++|++|+|||||+++|++........ ..|+|.+.....+.+++..++||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN---------------VAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 257 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------------CTTSEEEEETTEEEEETTGGGTTTBT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCC---------------CCCeEEEEEEEEEEECCceEEEEECCCCCcCc
Confidence 457899999999999999999999754322111 126677776777888999999999999
Q ss_pred -----CCCChHHH-HHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh
Q 010392 162 -----HSDFGGEV-ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (512)
Q Consensus 162 -----~~~~~~~~-~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~ 235 (512)
++.|.... ..++..+|++|+|+|+.++...++..++..+.+.++|+++|+||+|+...+. ...+++.+.+.+.
T Consensus 258 ~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 258 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE-STMKEFEENIRDH 336 (456)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCS-SHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCch-HHHHHHHHHHHHh
Confidence 45555443 3578899999999999999999999999999999999999999999976442 2223333333222
Q ss_pred cCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 236 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.. .....|++++||++|. |+++|++.+.+.+
T Consensus 337 ~~--~~~~~~~~~~SA~~g~----------gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 337 FQ--FLDYAPILFMSALTKK----------RIHTLMPAIIKAS 367 (456)
T ss_dssp CG--GGTTSCEEECCTTTCT----------TGGGHHHHHHHHH
T ss_pred cc--cCCCCCEEEEcCCCCc----------CHHHHHHHHHHHH
Confidence 11 1113579999999999 8888888887654
No 115
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.80 E-value=1.2e-19 Score=171.04 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=110.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC----------CeeEE
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN----------DTKIN 155 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~----------~~~i~ 155 (512)
.+...+|+|+|++|+|||||+++|+..........++ +.+.......+... ...+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV--------------GIDFREKRVVYNAQGPNGSSGKAFKVHLQ 87 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEE--------------EEEEEEEEEEEEC-------CCEEEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCce--------------eEEEEEEEEEECCccccccccCceeEEEE
Confidence 3457899999999999999999999765532222211 22221212222222 46799
Q ss_pred EEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCch-hHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHH
Q 010392 156 IIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFE 230 (512)
Q Consensus 156 liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~-~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~ 230 (512)
||||||+.+|...+..++..+|++|+|+|+++.... ....|+..+.. .++|+++|+||+|+...+. ...+++.+
T Consensus 88 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-v~~~~~~~ 166 (217)
T 2f7s_A 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQRE-VNERQARE 166 (217)
T ss_dssp EEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC-SCHHHHHH
T ss_pred EEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccc-cCHHHHHH
Confidence 999999999999999999999999999998874332 22344444433 4679999999999965321 11233333
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+.... .++++++||++|. |+.++++.|.+.+
T Consensus 167 ~~~~~-------~~~~~~~Sa~~g~----------gi~~l~~~l~~~i 197 (217)
T 2f7s_A 167 LADKY-------GIPYFETSAATGQ----------NVEKAVETLLDLI 197 (217)
T ss_dssp HHHHT-------TCCEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred HHHHC-------CCcEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 33332 3479999999999 9999999888765
No 116
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=1.6e-19 Score=177.01 Aligned_cols=155 Identities=19% Similarity=0.285 Sum_probs=116.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH-
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG- 167 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~- 167 (512)
..+|+++|++|+|||||+|+|++...... ...|+|+......+.+.+..+.||||||+.++..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~----------------~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG----------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEE----------------ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC-
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccC----------------CCCCeeEEEEEEEEEeCCCceEEEECcCCCccccc
Confidence 46899999999999999999987642111 1126777777788888889999999999988762
Q ss_pred ---------HHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhhhHHHHHHh
Q 010392 168 ---------EVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFELFIEL 235 (512)
Q Consensus 168 ---------~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~ 235 (512)
....++ ..+|++++|+|+++ ......++..+.+.++|+++|+||+|+...+ .....+++.+ .+
T Consensus 67 ~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~---~l 141 (274)
T 3i8s_A 67 SSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA---RL 141 (274)
T ss_dssp ---CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH---HH
T ss_pred cccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH---hc
Confidence 122222 68999999999887 3455667777888899999999999986422 1111222222 22
Q ss_pred cCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 236 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
++|++++||++|. |+++|++.|.+.++..
T Consensus 142 -------g~~~i~~SA~~g~----------gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 142 -------GCPVIPLVSTRGR----------GIEALKLAIDRYKANE 170 (274)
T ss_dssp -------TSCEEECCCGGGH----------HHHHHHHHHHTCCCCC
T ss_pred -------CCCEEEEEcCCCC----------CHHHHHHHHHHHHhcC
Confidence 3579999999999 9999999999887654
No 117
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-19 Score=172.46 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=112.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.....+|+|+|++|+|||||+++|++..+.....++. +.+. ....+.+.+ ..+.||||||+.
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~--------------~~~~--~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI--------------GVEF--ATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------------------CCSE--EEEEEEETTEEEEEEEECCTTTT
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc--------------ccee--EEEEEEECCEEEEEEEEECCCcc
Confidence 3457899999999999999999999876654333222 2222 223344555 588999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
+|...+..+++.+|++|+|+|+++... .....|+..+... ++|+++|+||+|+...+. ...++..++....
T Consensus 74 ~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~---- 148 (223)
T 3cpj_B 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRA-VPTEESKTFAQEN---- 148 (223)
T ss_dssp TTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCC-SCHHHHHHHHHHT----
T ss_pred chhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc-cCHHHHHHHHHHc----
Confidence 998888889999999999999887533 3344566666554 689999999999875321 1122333333222
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.++++++||++|. |+++++++|.+.+...
T Consensus 149 ---~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 149 ---QLLFTETSALNSE----------NVDKAFEELINTIYQK 177 (223)
T ss_dssp ---TCEEEECCCC-CC----------CHHHHHHHHHHHHTTC
T ss_pred ---CCEEEEEeCCCCC----------CHHHHHHHHHHHHHHH
Confidence 3579999999999 9999999999877543
No 118
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.80 E-value=1.6e-19 Score=165.70 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=114.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.+..+|+++|++|+|||||+++|++.. .....+++ + .....+.+++..+.+|||||+.++.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~--------------~----~~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTL--------------G----FNIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCS--------------S----EEEEEEEETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccC--------------c----cceEEEEECCEEEEEEECCCCHhHH
Confidence 356899999999999999999998765 22222221 2 2234556678999999999999888
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+..... .+++.+.+..... ..
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~ 151 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS---CNAIQEALELDSI--RS 151 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGC--CS
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC---HHHHHHHhChhhc--cC
Confidence 88888899999999999988753 3444455555544 3689999999999976421 2233333211111 12
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
..++++++||++|. |++++++.+.+.++
T Consensus 152 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 152 HHWRIQGCSAVTGE----------DLLPGIDWLLDDIS 179 (186)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 35689999999999 99999999988764
No 119
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.80 E-value=1.6e-19 Score=165.30 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=111.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCCCh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFG 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~~~ 166 (512)
..+|+++|++|+|||||+++|++........+++ +... ...+... ...+.+|||||+.+|.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDNY---SANVMVDGKPVNLGLWDTAGQEDYD 67 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCS--------------CCEE---EEEEEETTEEEEEEEECCCCSGGGT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcc--------------ccee---EEEEEECCEEEEEEEEECCCCHhHH
Confidence 5789999999999999999999876644333332 1111 1122333 3467799999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchhH-H-HHHHHHHHc--CCcEEEEEeccCCCCCCch-h----------hHhhhHHH
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQT-R-FVLKKALEF--GHAVVVVVNKIDRPSARPD-Y----------VINSTFEL 231 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~~-~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~~-~----------~~~~~~~~ 231 (512)
..+..++..+|++++|+|+++...... . .|+..+... ++|+++|+||+|+...... + ..++..++
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHH
Confidence 888888899999999999987533222 2 455666655 7899999999998653210 0 01111222
Q ss_pred HHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 232 ~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
....+ ..+++++||++|. |++++++.+.+.+..+.
T Consensus 148 ~~~~~------~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 148 AKEIG------AVKYLECSALTQR----------GLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHHTT------CSEEEECCTTTCT----------THHHHHHHHHHHHSCCC
T ss_pred HHhcC------CcEEEEecCCCcc----------CHHHHHHHHHHHHhccc
Confidence 22111 1379999999999 99999999999886653
No 120
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=163.98 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=107.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|.+|+|||||+++|++..+.....+++ +.+.. ....+......+.||||||+.+|.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~--------------~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNL--------------EDTYS-SEETVDHQPVHLRVMDTADLDTPR 83 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTC--------------CEEEE-EEEEETTEEEEEEEEECCC---CC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc--------------cceee-EEEEECCEEEEEEEEECCCCCcch
Confidence 356899999999999999999999887554433333 22221 111222234578899999999887
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH------cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~------~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
.. ..++..+|++++|+|+++.. ......|+..+.. .++|+++|+||+|+...+ ....++..++....
T Consensus 84 ~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~---- 157 (187)
T 3c5c_A 84 NC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR-QVTKAEGVALAGRF---- 157 (187)
T ss_dssp CT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGC-SSCHHHHHHHHHHH----
T ss_pred hH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcC-ccCHHHHHHHHHHc----
Confidence 64 67889999999999988642 3334456555554 378999999999996432 11223344443333
Q ss_pred cccccceeeecc-ccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 240 EQCDFQAIYASG-IQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 240 ~~~~~pvi~~Sa-~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++|| ++|. |+.++++.|.+.+
T Consensus 158 ---~~~~~e~Sa~~~g~----------gv~~lf~~l~~~i 184 (187)
T 3c5c_A 158 ---GCLFFEVSACLDFE----------HVQHVFHEAVREA 184 (187)
T ss_dssp ---TCEEEECCSSSCSH----------HHHHHHHHHHHHH
T ss_pred ---CCcEEEEeecCccc----------cHHHHHHHHHHHH
Confidence 347999999 8999 9999999988754
No 121
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.80 E-value=1.8e-19 Score=169.93 Aligned_cols=162 Identities=13% Similarity=0.119 Sum_probs=115.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|..|+|||||+++|+...+.....+++ +.+. .....+......+.||||||+.+|.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FENY-TACLETEEQRVELSLWDTSGSPYYD 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS--------------EEEE-EEEEEC--CEEEEEEEEECCSGGGT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCee--------------eeeE-EEEEEECCEEEEEEEEECCCCHhHH
Confidence 346789999999999999999999987665444443 2222 1122334445689999999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchh--HHHHHHHHHHc--CCcEEEEEeccCCCCCC-----------chhhHhhhHHH
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQ--TRFVLKKALEF--GHAVVVVVNKIDRPSAR-----------PDYVINSTFEL 231 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~--~~~~l~~~~~~--~~p~ivviNK~Dl~~~~-----------~~~~~~~~~~~ 231 (512)
..+..+++.+|++|+|+|+++...-. ...|+..+... ++|+++|+||+|+.... .....++..++
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI 169 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH
Confidence 88888999999999999988753322 34566666665 78999999999996521 01122233333
Q ss_pred HHHhcCCcccccc-ceeeeccccCccCCCCCCcCCC-chhhHHHHHHhCCC
Q 010392 232 FIELNATDEQCDF-QAIYASGIQGKAGLSPDNLADD-LGPLFESIMRCIPG 280 (512)
Q Consensus 232 ~~~~~~~~~~~~~-pvi~~Sa~~g~~~~~~~~~~~g-i~~Ll~~i~~~lp~ 280 (512)
...+ .+ +++++||++|. | +.++++.+.+.+..
T Consensus 170 ~~~~-------~~~~~~e~SA~~g~----------g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 170 AKQL-------GAEIYLEGSAFTSE----------KSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHH-------TCSEEEECCTTTCH----------HHHHHHHHHHHHHHHC
T ss_pred HHHc-------CCCEEEEeccCCCc----------ccHHHHHHHHHHHHhc
Confidence 3333 23 68999999999 8 99999999887643
No 122
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=164.53 Aligned_cols=162 Identities=18% Similarity=0.168 Sum_probs=110.2
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.....+|+++|.+|+|||||+++|++........++. +.+. ....+.+++ ..+.+|||||+.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN--------------PEDT--YERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTS--------------CTTE--EEEEEEETTEEEEEEEECCCCCS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCc--------------ccce--EEEEEEECCEEEEEEEEecCCCc
Confidence 3457899999999999999999997544332211111 1111 112233443 467899999999
Q ss_pred CChH-HHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcC
Q 010392 164 DFGG-EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (512)
Q Consensus 164 ~~~~-~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~ 237 (512)
++.. .+..+++.+|++|+|+|+++.. ......|+..+.. .++|+++|+||+|+...+. ...++..++....
T Consensus 84 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~a~~~-- 160 (195)
T 3cbq_A 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE-VSLEEGRHLAGTL-- 160 (195)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC-SCHHHHHHHHHHT--
T ss_pred cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCC-cCHHHHHHHHHHh--
Confidence 8765 6667789999999999988632 2344566666654 3689999999999975431 1223333333222
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.++++++||++|. |++++++.+.+.+...
T Consensus 161 -----~~~~~e~Sa~~~~----------~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 161 -----SCKHIETSAALHH----------NTRELFEGAVRQIRLR 189 (195)
T ss_dssp -----TCEEEEEBTTTTB----------SHHHHHHHHHHHHHTT
T ss_pred -----CCEEEEEcCCCCC----------CHHHHHHHHHHHHHHh
Confidence 2468999999999 9999999999877543
No 123
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.79 E-value=2.5e-19 Score=167.61 Aligned_cols=159 Identities=13% Similarity=0.144 Sum_probs=109.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~ 164 (512)
....+|+++|++|+|||||+++|+.........+++. ......+... ...+.||||||+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-----------------~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-----------------DNYSANVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-----------------EEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-----------------ceeEEEEEECCEEEEEEEEECCCchh
Confidence 3568899999999999999999998766544433321 1111222333 34667999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCcEEEEEeccCCCCCCch-----------hhHhhhH
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARPD-----------YVINSTF 229 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~~~~--~~l~~~~~~--~~p~ivviNK~Dl~~~~~~-----------~~~~~~~ 229 (512)
|...+..+++.+|++++|+|+++....+.. .|+..+... ++|+++|+||+|+...+.. ...++..
T Consensus 91 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 4gzl_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence 988888899999999999999875433332 466666665 7899999999998754210 0011112
Q ss_pred HHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 230 ELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 230 ~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
......+ ..+++++||++|. |++++++.|.+.+
T Consensus 171 ~~~~~~~------~~~~~~~SA~~g~----------gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 171 AMAKEIG------AVKYLECSALTQR----------GLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHTT------CSEEEECCTTTCT----------THHHHHHHHHHTT
T ss_pred HHHHhcC------CcEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 2222221 2369999999999 9999999998754
No 124
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=8.1e-19 Score=183.56 Aligned_cols=155 Identities=19% Similarity=0.262 Sum_probs=113.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC----
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF---- 165 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~---- 165 (512)
++|+++|.+|+|||||+|+|++........ ..|+|.+.....+.|.+..+.+|||||+...
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~---------------~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 66 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVED---------------EEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI 66 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecC---------------CCCCccceeeEEEEECCeEEEEEECCCccccccch
Confidence 579999999999999999999765432211 2277888888889999999999999998752
Q ss_pred -----hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhh-HHHHHHhcCCc
Q 010392 166 -----GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINST-FELFIELNATD 239 (512)
Q Consensus 166 -----~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~-~~~~~~~~~~~ 239 (512)
...+..+++.+|++|+|+|+..+.......+...++..++|+++|+||+|+... ...++ .+ +..++.
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~----~~~~~~~~-~~~lg~-- 139 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----FEREVKPE-LYSLGF-- 139 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----HHHHTHHH-HGGGSS--
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc----cHHHHHHH-HHhcCC--
Confidence 345677889999999999999988777777777777789999999999997421 11222 22 222222
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.+++++||++|. |+.+|++.+.+.+|.
T Consensus 140 ----~~~~~iSA~~g~----------gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 140 ----GEPIPVSAEHNI----------NLDTMLETIIKKLEE 166 (439)
T ss_dssp ----CSCEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred ----CCEEEEeccCCC----------CHHHHHHHHHHhccc
Confidence 147899999999 999999999988763
No 125
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=7.5e-19 Score=161.45 Aligned_cols=157 Identities=18% Similarity=0.265 Sum_probs=115.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh-
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~- 166 (512)
...+|+++|++|+|||||+++|++....... ..++|+......+.+++..+.+|||||+.+|.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGN----------------WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 69 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEE----------------CTTSCCEEEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccC----------------CCCeeccceEEEEEeCCcEEEEEECCCcCcccc
Confidence 4578999999999999999999875321111 12556666667778888999999999999874
Q ss_pred -----HHHHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 167 -----GEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 167 -----~~~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
.....++. .+|++++|+|+.. ......++..+...+.|+++|+||+|+..... ...+..++...+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~---- 141 (188)
T 2wjg_A 70 NSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLG--IEIDVDKLEKIL---- 141 (188)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT--CCCCHHHHHHHH----
T ss_pred ccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcccccc--chHHHHHHHHHh----
Confidence 33445554 3899999999875 34556677777778899999999999864221 112223322222
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.++++++||++|. |+.++++.+.+.+...
T Consensus 142 ---~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 142 ---GVKVVPLSAAKKM----------GIEELKKAISIAVKDK 170 (188)
T ss_dssp ---TSCEEECBGGGTB----------SHHHHHHHHHHHHTTC
T ss_pred ---CCCeEEEEecCCC----------CHHHHHHHHHHHHHhc
Confidence 2468999999999 9999999999887654
No 126
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.79 E-value=3e-19 Score=167.68 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=113.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~ 164 (512)
....+|+++|++|+|||||+++|+...+.....+++ +.... ..+... ...+.||||||+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~--------------~~~~~---~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--------------FDNFS---ANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSS--------------CCCEE---EEEECSSCEEEEEEECCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc--------------ceeEE---EEEEECCEEEEEEEEECCCcHH
Confidence 356899999999999999999999876644333332 11111 122233 35889999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCch-hHH-HHHHHHHHc--CCcEEEEEeccCCCCCCch-------hhHhhhHHHHH
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPMP-QTR-FVLKKALEF--GHAVVVVVNKIDRPSARPD-------YVINSTFELFI 233 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~~-~~~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~~-------~~~~~~~~~~~ 233 (512)
|...+..+++.+|++|+|+|+++...- ... .|+..+... ++|+++|+||+|+...+.. ...++..++..
T Consensus 70 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 998888899999999999998874322 222 566666655 7899999999998653210 01233333333
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
.++. .+++++||++|. |++++++.|.+.+..+.
T Consensus 150 ~~~~------~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 150 QIGA------AAYIECSSKTQQ----------NVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHTC------SEEEECCTTTCT----------THHHHHHHHHHHHHCC-
T ss_pred HcCC------ceEEEccCCCCC----------CHHHHHHHHHHHHhhhh
Confidence 3321 368999999999 99999999998875543
No 127
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.79 E-value=9.3e-19 Score=162.52 Aligned_cols=163 Identities=14% Similarity=0.145 Sum_probs=107.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE---ECCeeEEEEeCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT---YNDTKINIIDTPGH 162 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~---~~~~~i~liDtPG~ 162 (512)
.++..+|+++|..|+|||||+++|.+..... .+. +.+......... .....+.||||||+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 79 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETL--------------FLESTNKIYKDDISNSSFVNFQIWDFPGQ 79 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGG--------------GCCCCCSCEEEEECCTTSCCEEEEECCSS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCc---cee--------------eeccccceeeeeccCCCeeEEEEEECCCC
Confidence 4467899999999999999999887642211 111 222222222322 34478999999999
Q ss_pred CCChHHH---HHHHHhccEEEEEEeCCCCCchhHHHHHHHHHH-----cCCcEEEEEeccCCCCCCc-----hhhHhhhH
Q 010392 163 SDFGGEV---ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE-----FGHAVVVVVNKIDRPSARP-----DYVINSTF 229 (512)
Q Consensus 163 ~~~~~~~---~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~-----~~~p~ivviNK~Dl~~~~~-----~~~~~~~~ 229 (512)
++|.... ..+++.+|++|+|+|+++........+...+.. .++|+++|+||+|+...+. ..+..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~ 159 (196)
T 3llu_A 80 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRAN 159 (196)
T ss_dssp CCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHH
Confidence 9988776 789999999999999998744444444344333 2689999999999875321 11111112
Q ss_pred HHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 230 ELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 230 ~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+.+..... ....++++++||++ . |+.++++.+.+.+
T Consensus 160 ~~~~~~~~--~~~~~~~~e~Sa~~-~----------~v~~~f~~l~~~l 195 (196)
T 3llu_A 160 DDLADAGL--EKLHLSFYLTSIYD-H----------SIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHTTC--TTSCEEEEEECTTS-T----------HHHHHHHHHHHHT
T ss_pred HHHHHhhh--hcCCcceEEEEech-h----------hHHHHHHHHHHHh
Confidence 22222111 12356899999999 8 9999999998764
No 128
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3.9e-19 Score=166.55 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=108.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|++|+|||||+++|++........+++ +.+.. ..+...+ ..+.||||||+.+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~ 86 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV--------------FENYV---ADIEVDGKQVELALWDTAGQEDY 86 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEETTEEEEEEEEECTTCTTC
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcc--------------cceEE---EEEEECCEEEEEEEEECCCcHHH
Confidence 45789999999999999999999876653332222 11211 1233343 57899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhH-HHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhh-------------h
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQT-RFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINS-------------T 228 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~-~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~-------------~ 228 (512)
...+..++..+|++++|+|+++... ... ..|+..+... ++|+++|+||+|+.... ...+. .
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHH
Confidence 8888888999999999999887422 222 4566666655 78999999999987532 11111 1
Q ss_pred HHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.+.....+ ..+++++||++|. |++++++.|.+.+..+
T Consensus 165 ~~~~~~~~------~~~~~~~SA~~g~----------gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 165 RAMAVRIQ------AYDYLECSAKTKE----------GVREVFETATRAALQK 201 (207)
T ss_dssp HHHHHHTT------CSEEEECCTTTCT----------THHHHHHHHHHHHHSC
T ss_pred HHHHHhcC------CCEEEEeeCCCCC----------CHHHHHHHHHHHHHHH
Confidence 11111111 1268999999999 9999999999876544
No 129
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=164.89 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=106.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
.....+|+++|+.|+|||||+++|++..+.....+++ +... ...+.+.+ ..+.||||||+.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA--------------FDNF---SAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCS--------------SEEE---EEEEEETTEEEEEEEEECCCST
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc--------------ccee---EEEEEECCEEEEEEEEECCCCH
Confidence 4457899999999999999999999776443332222 1111 12334444 467799999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCchhH-H-HHHHHHHHc--CCcEEEEEeccCCCCCCc-----------hhhHhhh
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQT-R-FVLKKALEF--GHAVVVVVNKIDRPSARP-----------DYVINST 228 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~~~-~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~-----------~~~~~~~ 228 (512)
+|...+..++..+|++++|+|+++...... . .|+..+... ++|+++|+||+|+..... ....++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 998888888999999999999887433222 2 455555554 789999999999875310 1111222
Q ss_pred HHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
..+...++ .++++++||++|. |+.++++.|.+.+.
T Consensus 160 ~~~~~~~~------~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 160 KLLAEEIK------AASYIECSALTQK----------NLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHHHT------CSEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHhcC------CcEEEEEecCCCC----------CHHHHHHHHHHHHh
Confidence 33222222 1368999999999 99999999987653
No 130
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.78 E-value=6.5e-19 Score=171.06 Aligned_cols=155 Identities=26% Similarity=0.404 Sum_probs=115.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
+..+|+++|++|+|||||+|+|++....... ..|+|+......+.+.+..+.||||||+.++..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~----------------~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVAN----------------WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEE----------------CTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccC----------------CCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 4578999999999999999999875432111 127788888888888899999999999988763
Q ss_pred ------HHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 168 ------EVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 168 ------~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
....++ ..+|++++|+|+++. .....++..+.+.++|+++|+||+|+...+. ...+..++...+
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~--i~~~~~~l~~~l---- 139 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTG--MKIDRYELQKHL---- 139 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTT--CCBCHHHHHHHH----
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccc--hHHHHHHHHHHc----
Confidence 224444 478999999999873 3445677778888999999999999854221 111222322222
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.+|++++||++|. |+.+|++.+.+.+.
T Consensus 140 ---g~~vi~~SA~~g~----------gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 140 ---GIPVVFTSSVTGE----------GLEELKEKIVEYAQ 166 (258)
T ss_dssp ---CSCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ---CCCEEEEEeeCCc----------CHHHHHHHHHHHhh
Confidence 3589999999999 99999999988764
No 131
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.78 E-value=1.2e-18 Score=160.44 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=100.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|..|+|||||+++|++........++. +... ...+.+.+ ..+.||||||+.++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--------------EDSY---RKQVVIDGETCLLDILDTAGQEEY 82 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTC--------------CEEE---EEEEEETTEEEEEEEEECCC----
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCcc--------------ceEE---EEEEEECCEEEEEEEEECCChHHH
Confidence 35789999999999999999999876543333222 1111 12333443 46899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
...+..++..+|++++|+|+.+... .....|+..+.. .++|+++|+||+|+.... ...+++.++....
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~----- 155 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT--VDTKQAHELAKSY----- 155 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC--SCHHHHHHHHHHH-----
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc--CCHHHHHHHHHHc-----
Confidence 9988999999999999999887432 233445555544 268999999999987521 2233444444333
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |+.++++.|.+.+
T Consensus 156 --~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 181 (190)
T 3con_A 156 --GIPFIETSAKTRQ----------GVEDAFYTLVREI 181 (190)
T ss_dssp --TCCEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3469999999999 9999999988765
No 132
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=2.5e-19 Score=177.95 Aligned_cols=160 Identities=22% Similarity=0.243 Sum_probs=113.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC-C--
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS-D-- 164 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~-~-- 164 (512)
+..+|+|+|++|+|||||+|+|++......... .++|.......+.+++..+++|||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~---------------~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRK---------------AQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCC---------------SSCCSSCEEEEEEETTEEEEEESSSSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCC---------------CCcceeeEEEEEEECCeeEEEEECcCCCccch
Confidence 346799999999999999999998654321110 1223222334466788899999999997 3
Q ss_pred ------ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 165 ------FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 165 ------~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
+...+..++..+|++++|+|+.+ +...+..+++.+...+.|+++|+||+|+... .....+.+.++....+.
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~-~~~~~~~l~~l~~~~~~- 148 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE-KADLLPHLQFLASQMNF- 148 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-HHHHHHHHHHHHTTSCC-
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc-HHHHHHHHHHHHHhcCc-
Confidence 22223445677899999999988 7778887888777778999999999998752 12222222222111111
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.+++++||++|. |+..|++.+.+.+|.
T Consensus 149 -----~~~i~iSA~~g~----------~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 149 -----LDIVPISAETGL----------NVDTIAAIVRKHLPE 175 (301)
T ss_dssp -----SEEEECCTTTTT----------THHHHHHHHHTTCCB
T ss_pred -----CceEEEECCCCC----------CHHHHHHHHHHhCCc
Confidence 158999999999 999999999998864
No 133
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.78 E-value=2.2e-18 Score=158.51 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=108.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~ 163 (512)
+....+|+++|.+|+|||||+++|+...+.....++. ... ...+.+.+ ..+.||||||+.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~---------------~~~---~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG---------------GRF---KKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC---------------EEE---EEEEEETTEEEEEEEEECSSSC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc---------------ceE---EEEEEECCEEEEEEEEECCCCh
Confidence 4457899999999999999999999876653332221 111 13344444 567889999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc----CCcEEEEEeccCCCCCCc-hhhHhhhHHHHHHhcC
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARP-DYVINSTFELFIELNA 237 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~----~~p~ivviNK~Dl~~~~~-~~~~~~~~~~~~~~~~ 237 (512)
+|. +++.+|++++|+|+++... .....|+..+... ++|+++|+||+|+..... ....++..++...++
T Consensus 79 ~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~- 152 (184)
T 3ihw_A 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK- 152 (184)
T ss_dssp CHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT-
T ss_pred hhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC-
Confidence 886 7888999999999987543 3335666666653 579999999999853221 222333444443332
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.+.+.+
T Consensus 153 -----~~~~~e~Sa~~~~----------gv~~lf~~l~~~i 178 (184)
T 3ihw_A 153 -----RCTYYETCATYGL----------NVERVFQDVAQKV 178 (184)
T ss_dssp -----TCEEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred -----CCeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 2468999999999 9999999988754
No 134
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=2.1e-19 Score=164.24 Aligned_cols=158 Identities=21% Similarity=0.246 Sum_probs=110.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.+..+|+++|++|+|||||+++|+..... ...+ |+......+.+++..+.+|||||+.++.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~------------------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV-TTKP------------------TIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECS------------------STTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC-ccCC------------------cCccceEEEEECCEEEEEEECCCCHhHH
Confidence 46789999999999999999999854331 1111 1222234556778899999999999998
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..++..+|++++|+|+++.. ......++..+.. .++|+++|+||+|+.... ..+++.+.+.... ...
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~i~~~~~~~~--~~~ 151 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL---SASEVSKELNLVE--LKD 151 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC---CHHHHHHHTTTTT--CCS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC---CHHHHHHHhCccc--ccC
Confidence 88888899999999999987753 3444555555543 468999999999997542 1233333322111 112
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
..++++++||++|. |+++++++|.+.+
T Consensus 152 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 178 (183)
T 1moz_A 152 RSWSIVASSAIKGE----------GITEGLDWLIDVI 178 (183)
T ss_dssp SCEEEEEEBGGGTB----------THHHHHHHHHHHH
T ss_pred CceEEEEccCCCCc----------CHHHHHHHHHHHH
Confidence 35689999999999 9999999998765
No 135
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=8.2e-19 Score=170.50 Aligned_cols=167 Identities=15% Similarity=0.137 Sum_probs=115.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+|+|++|+|||||+++|++.......... .++|.......+.+.+..++||||||+.++.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGS--------------QTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTS--------------CCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCC--------------CceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 45689999999999999999999987643322211 1245555566778899999999999998763
Q ss_pred H-----------HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc-----CCcEEEEEe-ccCCCCCCchhhH----
Q 010392 167 G-----------EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-----GHAVVVVVN-KIDRPSARPDYVI---- 225 (512)
Q Consensus 167 ~-----------~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~-----~~p~ivviN-K~Dl~~~~~~~~~---- 225 (512)
. .+..+++.+|++|+|+|+.. +..+...++..+.+. +.|.++|+| |+|+...+....+
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~ 164 (260)
T 2xtp_A 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSD 164 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcc
Confidence 2 22335677999999999985 666667777777665 568887777 9999854432221
Q ss_pred -hhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 226 -NSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.++.+....+.... ..+..+++||++|. |+.++++.|.+.++.
T Consensus 165 ~~~~~~~~~~~~~~~--~~~~~~~~SA~~~~----------gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 165 NKALSKLVAACGGRI--CAFNNRAEGSNQDD----------QVKELMDCIEDLLME 208 (260)
T ss_dssp CHHHHHHHHHTTTCE--EECCTTCCHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCeE--EEecCcccccccHH----------HHHHHHHHHHHHHHh
Confidence 12333333332211 01222889999999 999999999887653
No 136
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.78 E-value=2e-19 Score=169.63 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=109.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC-C--eeEEEEeCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-D--TKINIIDTPGH 162 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~--~~i~liDtPG~ 162 (512)
.....+|+++|.+|+|||||+++|++.........+. +.+... ..+... + ..+.||||||+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~--~~~~~~~~~~~~~~l~Dt~G~ 71 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATV--------------GAVNHP--VTFLDDQGNVIKFNVWDTAGQ 71 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTT--------------TEEEEE--EEEEBTTSCEEEEEEEEECSG
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceeeEE--EEEEeCCCcEEEEEEEecCCc
Confidence 3457899999999999999999998765432222221 222211 112221 1 57999999999
Q ss_pred CCChHHHHHHHHhccEEEEEEeCCCCCch-hHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 163 SDFGGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 163 ~~~~~~~~~~~~~~d~~llvida~~g~~~-~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
.++...+..++..+|++|+|+|++++... ....|+..+... ++|+++|+||+|+...+ ....+.......
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~----- 145 (218)
T 4djt_A 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ-KISKKLVMEVLK----- 145 (218)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTT-----
T ss_pred hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-ccCHHHHHHHHH-----
Confidence 99988888899999999999999885433 233454555443 68999999999987532 111122222211
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
...++++++||++|. |++++++.|.+.+..
T Consensus 146 --~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 146 --GKNYEYFEISAKTAH----------NFGLPFLHLARIFTG 175 (218)
T ss_dssp --TCCCEEEEEBTTTTB----------TTTHHHHHHHHHHHC
T ss_pred --HcCCcEEEEecCCCC----------CHHHHHHHHHHHHhc
Confidence 124579999999999 999999999987644
No 137
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.78 E-value=7.8e-19 Score=171.88 Aligned_cols=153 Identities=19% Similarity=0.292 Sum_probs=115.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
+.++|+++|++|+|||||+|+|++...... ...|+|+......+.+.+..+++|||||+.+|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVG----------------NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEE----------------ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccC----------------CCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 357899999999999999999987643111 1226777777888899999999999999998765
Q ss_pred ------HHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcC-CcEEEEEeccCCCCCC-chhhHhhhHHHHHHhcC
Q 010392 168 ------EVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFG-HAVVVVVNKIDRPSAR-PDYVINSTFELFIELNA 237 (512)
Q Consensus 168 ------~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~-~p~ivviNK~Dl~~~~-~~~~~~~~~~~~~~~~~ 237 (512)
....++ ..+|++++|+|+++. .....++..+.+.+ +|+++|+||+|+...+ .......+.+ .+
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~l-- 138 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRK---EL-- 138 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHH---HH--
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHH---Hc--
Confidence 344444 569999999998874 45666777777888 9999999999975321 1111222222 22
Q ss_pred CccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 238 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+|++++||++|. |+.++++.+.+.+
T Consensus 139 -----g~~~~~~Sa~~g~----------gi~~l~~~i~~~~ 164 (271)
T 3k53_A 139 -----GVPVIPTNAKKGE----------GVEELKRMIALMA 164 (271)
T ss_dssp -----SSCEEECBGGGTB----------THHHHHHHHHHHH
T ss_pred -----CCcEEEEEeCCCC----------CHHHHHHHHHHHH
Confidence 3579999999999 9999999998765
No 138
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3.2e-18 Score=158.68 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=109.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~ 164 (512)
....+|+++|++|+|||||+++|++........++. +... ...+... ...+.||||||+.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL--------------ESTY---RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC--------------CEEE---EEEEEETTEEEEEEEEECCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCC--------------CceE---EEEEEECCEEEEEEEEECCCCCc
Confidence 356889999999999999999999876654433332 2111 1122333 35789999999998
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
...+..++..+|++++|+|+++. .......|+..+.. .++|+++|+||+|+...+ ....++..++....
T Consensus 89 -~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~---- 162 (196)
T 2atv_A 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR-QVSTEEGEKLATEL---- 162 (196)
T ss_dssp -CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHH----
T ss_pred -ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccccc-ccCHHHHHHHHHHh----
Confidence 77788899999999999998873 22334445554443 478999999999997532 11123333333322
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|.+ |+.++++.|.+.+
T Consensus 163 ---~~~~~~~Sa~~g~~---------gi~~l~~~l~~~i 189 (196)
T 2atv_A 163 ---ACAFYECSACTGEG---------NITEIFYELCREV 189 (196)
T ss_dssp ---TSEEEECCTTTCTT---------CHHHHHHHHHHHH
T ss_pred ---CCeEEEECCCcCCc---------CHHHHHHHHHHHH
Confidence 34799999999862 6788888887754
No 139
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.78 E-value=9.4e-20 Score=170.08 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=84.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh--cCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC----CeeEEEEeCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ--AKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN----DTKINIIDTPG 161 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~--~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~----~~~i~liDtPG 161 (512)
...+|+++|++|+|||||+++|++. .+.....+++ + .+.....+.++ ...+.||||||
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~--------------~--~~~~~~~~~~~~~~~~~~~~l~Dt~G 82 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTS--------------G--VEVVVAPVTIPDTTVSVELFLLDTAG 82 (208)
T ss_dssp EEEEEEEC--------------------------------------------------CEEEECTTSSEEEEEEEEETTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCcc--------------c--eEEEEEEEEECCcccEEEEEEEECCC
Confidence 4678999999999999999999976 3332222221 1 12233344555 45799999999
Q ss_pred CCCChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH------cCCcEEEEEeccCCCC-CCchhhHhhhHHHHH
Q 010392 162 HSDFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE------FGHAVVVVVNKIDRPS-ARPDYVINSTFELFI 233 (512)
Q Consensus 162 ~~~~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~------~~~p~ivviNK~Dl~~-~~~~~~~~~~~~~~~ 233 (512)
+.+|...+..++..+|++|+|+|+++... .....|+..+.. .++|+++|+||+|+.. .+ ....+++.++..
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-~v~~~~~~~~~~ 161 (208)
T 2yc2_C 83 SDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH-QVRLDMAQDWAT 161 (208)
T ss_dssp THHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--------CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhc-cCCHHHHHHHHH
Confidence 99998888888999999999999987533 444566666665 4789999999999975 22 112334444444
Q ss_pred HhcCCccccccceeeecccc-CccCCCCCCcCCCchhhHHHHHHhC
Q 010392 234 ELNATDEQCDFQAIYASGIQ-GKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~-g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+ .++++++||++ |. |+.++++.|.+.+
T Consensus 162 ~~-------~~~~~~~Sa~~~~~----------gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 162 TN-------TLDFFDVSANPPGK----------DADAPFLSIATTF 190 (208)
T ss_dssp HT-------TCEEEECCC-----------------CHHHHHHHHHH
T ss_pred Hc-------CCEEEEeccCCCCc----------CHHHHHHHHHHHH
Confidence 33 25799999999 98 8999999888765
No 140
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.78 E-value=3.6e-19 Score=163.97 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=113.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
++..+|+++|++|+|||||+++|+...... ..+ |+......+.+++..+.+|||||+.++.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~------------------t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVP------------------TVGVNLETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECS------------------STTCCEEEEEETTEEEEEEEECCSSSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCC------------------CCceEEEEEEECCEEEEEEECCCCHhHH
Confidence 356789999999999999999997544321 111 1122234566778899999999999988
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+..... .+++.+.+..... ..
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~ 155 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---EAEIAEQLGVSSI--MN 155 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGC--CS
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhc--cC
Confidence 88788889999999999988752 3344455555544 3689999999999975431 1223332211111 12
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
..++++++||++|. |++++++.|.+.++
T Consensus 156 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 156 RTWTIVKSSSKTGD----------GLVEGMDWLVERLR 183 (189)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CceEEEEccCCCcc----------CHHHHHHHHHHHHH
Confidence 35689999999999 99999999988764
No 141
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.77 E-value=6.8e-19 Score=164.11 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=109.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|.+|+|||||+++|++........+++ +.+.. ..+.+.+ ..+.||||||+.+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FENYI---ADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSS--------------CCCCE---EEEEETTEEEEEEEECCCCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc--------------cceEE---EEEEECCEEEEEEEEECCCchhH
Confidence 45789999999999999999999876654433332 11111 1233333 47899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhH-HHHHHHHHHc--CCcEEEEEeccCCCCCCch-h----------hHhhhHH
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQT-RFVLKKALEF--GHAVVVVVNKIDRPSARPD-Y----------VINSTFE 230 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~-~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~-~----------~~~~~~~ 230 (512)
...+..++..+|++++|+|+++... ... ..|+..+... ++|+++|+||+|+...... + ..++..+
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 8888888999999999999887422 222 4556666655 7899999999999754210 0 0111222
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
....++ ..+++++||++|. |++++++.|.+.
T Consensus 167 ~~~~~~------~~~~~~~SA~~g~----------gi~~l~~~i~~~ 197 (201)
T 2gco_A 167 MANRIS------AFGYLECSAKTKE----------GVREVFEMATRA 197 (201)
T ss_dssp HHHHTT------CSEEEECCTTTCT----------THHHHHHHHHHH
T ss_pred HHHhCC------CcEEEEeeCCCCC----------CHHHHHHHHHHH
Confidence 222221 1268999999999 999999998765
No 142
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.77 E-value=3e-18 Score=155.94 Aligned_cols=153 Identities=11% Similarity=0.144 Sum_probs=103.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
....+|+++|.+|+|||||+++|++..+.. ..+++ +... ...+..++ ..+.||||||+.+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~--------------~~~~---~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTE--------------SEQY---KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCS--------------SSEE---EEEEEETTEEEEEEEEECSSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCc--------------ceeE---EEEEEECCEEEEEEEEECCCCch
Confidence 356789999999999999999999876653 22222 2111 12233333 5689999999987
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH------cCCcEEEEEeccCCCCCCc-hhhHhhhHHHHHHhc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE------FGHAVVVVVNKIDRPSARP-DYVINSTFELFIELN 236 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~------~~~p~ivviNK~Dl~~~~~-~~~~~~~~~~~~~~~ 236 (512)
..+++.+|++++|+|+++... .....|+..+.. .++|+++|+||+|+..... ....+++.++.....
T Consensus 67 -----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~ 141 (178)
T 2iwr_A 67 -----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK 141 (178)
T ss_dssp -----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS
T ss_pred -----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc
Confidence 357888999999999887432 233343333332 2689999999999853211 112233344333221
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.+.+.+
T Consensus 142 ------~~~~~~~Sa~~~~----------~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 142 ------RCSYYETXATYGL----------NVDRVFQEVAQKV 167 (178)
T ss_dssp ------SEEEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred ------CCeEEEEeccccC----------CHHHHHHHHHHHH
Confidence 3579999999999 9999999988764
No 143
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.77 E-value=8.6e-19 Score=171.32 Aligned_cols=154 Identities=18% Similarity=0.283 Sum_probs=110.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh--
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG-- 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~-- 166 (512)
..+|+++|++|+|||||+|+|++........ .|+|+......+.+ +..+.+|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~----------------pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNW----------------PGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS----------------SCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCC----------------CCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 5689999999999999999998754221111 15555555455555 6789999999999876
Q ss_pred ----HHHHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 167 ----GEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 167 ----~~~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
.....++. .+|++++|+|+++ ......++..+.+.++|+++|+||+|+..... ...+...+...+
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~l~~~l----- 136 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQG--KKINVDKLSYHL----- 136 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTT--CCCCHHHHHHHH-----
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCC--cHHHHHHHHHHc-----
Confidence 34455565 5999999999876 23445666777778999999999999853211 111222222222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
++|++++||++|. |+++|++.+.+.+..
T Consensus 137 --g~~vi~~SA~~g~----------gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 137 --GVPVVATSALKQT----------GVDQVVKKAAHTTTS 164 (272)
T ss_dssp --TSCEEECBTTTTB----------SHHHHHHHHHHSCTT
T ss_pred --CCCEEEEEccCCC----------CHHHHHHHHHHHHhh
Confidence 3579999999999 999999999987643
No 144
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=163.47 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=91.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|++|+|||||+++|++........+++ +... ...+...+ ..+.||||||+.+|
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV--------------FERY---MVNLQVKGKPVHLHIWDTAGQDDY 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCC--------------CEEE---EEEEEETTEEEEEEEEEC------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc--------------ceeE---EEEEEECCEEEEEEEEECCCchhh
Confidence 46789999999999999999999765433322221 1111 12233333 47899999999999
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCch-hHH-HHHHHHHHc--CCcEEEEEeccCCCCCCch-h----------hHhhhHH
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPMP-QTR-FVLKKALEF--GHAVVVVVNKIDRPSARPD-Y----------VINSTFE 230 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~~-~~~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~~-~----------~~~~~~~ 230 (512)
...+..++..+|++++|+|+++...- ... .|+..+... ++|+++|+||+|+...... + ..++..+
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 175 (214)
T 2j1l_A 96 DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE 175 (214)
T ss_dssp ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred hHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHH
Confidence 99899999999999999998874322 222 455555543 6899999999999754210 0 0112222
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+...++ ..+++++||++|. |++++++.|.+.+
T Consensus 176 ~~~~~~------~~~~~~~SA~~g~----------gi~el~~~l~~~~ 207 (214)
T 2j1l_A 176 MARSVG------AVAYLECSARLHD----------NVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHTT------CSEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred HHHhcC------CCEEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 222221 1378999999999 9999999998765
No 145
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.77 E-value=5.2e-18 Score=161.43 Aligned_cols=162 Identities=14% Similarity=0.095 Sum_probs=108.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC-
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF- 165 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~- 165 (512)
....+|+|+|.+|+|||||+++|++....... ..+.|.......+.+.+..+.||||||+.++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS----------------YSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC----------------C-----CEEEEEEEETTEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC----------------CCCcceeeeeeeeecCCCeEEEEECCCCcCcc
Confidence 35689999999999999999999876432111 1134445555566677889999999999432
Q ss_pred --------hHHHHHHHHhccEEEEEEeCCCCCc---hhHHHHHHHHHHc--CCcEEEEEeccCCCCCCc-hh-hHhhhHH
Q 010392 166 --------GGEVERILNMVEGVLLVVDSVEGPM---PQTRFVLKKALEF--GHAVVVVVNKIDRPSARP-DY-VINSTFE 230 (512)
Q Consensus 166 --------~~~~~~~~~~~d~~llvida~~g~~---~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~-~~-~~~~~~~ 230 (512)
...+..++..+|++|+|+|+++... .....++..+... ++|+++|+||+|+...+. .. ..+.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 170 (228)
T 2qu8_A 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ 170 (228)
T ss_dssp GGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHH
Confidence 1223344677899999999887533 2334566666665 789999999999975321 11 1112222
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.....+ ..++++++||++|. |+.++++.|.+.+.
T Consensus 171 ~~~~~~-----~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 171 ILDNVK-----NPIKFSSFSTLTGV----------GVEQAKITACELLK 204 (228)
T ss_dssp HHHHCC-----SCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHhcC-----CCceEEEEecccCC----------CHHHHHHHHHHHHH
Confidence 222111 12579999999999 99999999987663
No 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.77 E-value=1.6e-20 Score=174.78 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=106.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
+...+|+|+|++|+|||||+++|+.......... .++.......+.+++ ..+.||||||+.+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYIS----------------TIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHH----------------HHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCC----------------cccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 4578999999999999999999986544322221 223333334455555 5799999999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|...+..+++.+|++|+|+|+++... .....|+..+... ++|+++|+||+|+...+.. ..++........
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v-~~~~~~~~~~~~----- 168 (199)
T 3l0i_B 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV-DYTTAKEFADSL----- 168 (199)
T ss_dssp CCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCC-CSCC-CHHHHTT-----
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccC-CHHHHHHHHHHc-----
Confidence 98888889999999999999887533 3344566666554 6899999999999754311 111222222222
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+.+++++|.+.+.
T Consensus 169 --~~~~~~vSA~~g~----------gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 169 --GIPFLETSAKNAT----------NVEQSFMTMAAEIK 195 (199)
T ss_dssp --TCCBCCCCC---H----------HHHHHHHHHTTTTT
T ss_pred --CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 99999999988764
No 147
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.76 E-value=1.1e-18 Score=160.16 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=108.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|++|+|||||+++|++..+.....++. +.... ....+......+.||||||+.+|.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~--------------~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FENYT-ASFEIDTQRIELSLWDTSGSPYYD 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS--------------EEEEE-EEEECSSCEEEEEEEEECCSGGGT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceeEE-EEEEECCEEEEEEEEECCCChhhh
Confidence 456889999999999999999999876644333332 11111 111122234578999999999988
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCchh-H-HHHHHHHHHc--CCcEEEEEeccCCCCCCc-----------hhhHhhhHHH
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPMPQ-T-RFVLKKALEF--GHAVVVVVNKIDRPSARP-----------DYVINSTFEL 231 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~~~-~-~~~l~~~~~~--~~p~ivviNK~Dl~~~~~-----------~~~~~~~~~~ 231 (512)
..+..++..+|++|+|+|+++...-. . ..|+..+... ++|+++|+||+|+..... ....++..++
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 88888889999999999988743222 2 3455555543 689999999999864210 0111223333
Q ss_pred HHHhcCCccccccceeeeccc-cCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 232 FIELNATDEQCDFQAIYASGI-QGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 232 ~~~~~~~~~~~~~pvi~~Sa~-~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
...++ .++++++||+ +|. |++++++.+.+.+
T Consensus 150 ~~~~~------~~~~~e~Sa~~~~~----------gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 150 AKQIG------AATYIECSALQSEN----------SVRDIFHVATLAC 181 (184)
T ss_dssp HHHHT------CSEEEECBTTTBHH----------HHHHHHHHHHHHH
T ss_pred HHHcC------CcEEEEeeecCCCc----------CHHHHHHHHHHHH
Confidence 33322 2468999999 688 8999999988653
No 148
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=7.7e-19 Score=183.54 Aligned_cols=154 Identities=21% Similarity=0.341 Sum_probs=109.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC------
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS------ 163 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~------ 163 (512)
++|+++|.+|+|||||+|+|++........ ..|+|.+.....+.|.+..+.+|||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~---------------~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 68 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVED---------------TPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPF 68 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTCSSCCEEEC---------CH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCCccceEEEEEEECCceEEEEECCCCCCcchhH
Confidence 679999999999999999998765432211 23778777777888889999999999996
Q ss_pred --CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 164 --DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 164 --~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
.+...+..++..+|++|+|+|+.++......++...++..++|+++|+||+|+...+. ++.+.+ .++.
T Consensus 69 ~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~-----~~~~~~-~lg~---- 138 (436)
T 2hjg_A 69 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-----NIYDFY-SLGF---- 138 (436)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC----------CCCSSG-GGSS----
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh-----hHHHHH-HcCC----
Confidence 4566677889999999999999999888887777878888999999999999864321 111111 1221
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
-+++++||++|. |+.+|++.+.+.++.
T Consensus 139 --~~~~~iSA~~g~----------gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 139 --GEPYPISGTHGL----------GLGDLLDAVAEHFKN 165 (436)
T ss_dssp --CCCEECBTTTTB----------THHHHHHHHHHTGGG
T ss_pred --CCeEEEeCcCCC----------ChHHHHHHHHHhcCc
Confidence 157999999999 999999999998864
No 149
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.76 E-value=1e-18 Score=163.70 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=108.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE--CCeeEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY--NDTKINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~~i~liDtPG~~ 163 (512)
.....+|+++|.+|+|||||+++|++..+.....+++ +.+. ...+.+ ....+.||||||+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FENY---TASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS--------------EEEE---EEEEESSSSEEEEEEEEECCSG
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc--------------ceeE---EEEEEECCEEEEEEEEeCCCcH
Confidence 3457899999999999999999999876654333332 1111 112222 34678999999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCc-hhH-HHHHHHHHHc--CCcEEEEEeccCCCCCCc-----------hhhHhhh
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQT-RFVLKKALEF--GHAVVVVVNKIDRPSARP-----------DYVINST 228 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~-~~~-~~~l~~~~~~--~~p~ivviNK~Dl~~~~~-----------~~~~~~~ 228 (512)
+|...+..++..+|++|+|+|+++... ... ..|+..+... ++|+++|+||+|+..... ....++.
T Consensus 88 ~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 167 (205)
T 1gwn_A 88 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG 167 (205)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred hhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHH
Confidence 988888888899999999999887432 222 3455555553 689999999999964210 0111223
Q ss_pred HHHHHHhcCCccccccceeeeccc-cCccCCCCCCcCCCchhhHHHHHHh
Q 010392 229 FELFIELNATDEQCDFQAIYASGI-QGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~Sa~-~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.++...++ .++++++||+ +|. |++++++.+.+.
T Consensus 168 ~~~~~~~~------~~~~~e~SAk~~~~----------gv~~lf~~l~~~ 201 (205)
T 1gwn_A 168 ANMAKQIG------AATYIECSALQSEN----------SVRDIFHVATLA 201 (205)
T ss_dssp HHHHHHHT------CSEEEECCTTTCHH----------HHHHHHHHHHHH
T ss_pred HHHHHHcC------CCEEEEeeeccCCc----------CHHHHHHHHHHH
Confidence 33333322 2468999999 688 899999988765
No 150
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.76 E-value=4.1e-18 Score=164.40 Aligned_cols=161 Identities=16% Similarity=0.182 Sum_probs=113.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC-----
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH----- 162 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~----- 162 (512)
...+|+++|.+|+|||||+|+|++.........+. ++|.......+.+.+..++||||||+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~--------------~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~ 85 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT--------------SVTRACTTGSRRWDKCHVEVVDTPDIFSSQV 85 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSSTTH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCC--------------CccccEEEEEEEECCcEEEEEECCCCCCCCC
Confidence 46789999999999999999999876654433221 45666666778889999999999998
Q ss_pred ---CCChHHHHHHH----HhccEEEEEEeCCCCCchhHHHHHHHHHHc------CCcEEEEEeccCCCCCCchhhHh---
Q 010392 163 ---SDFGGEVERIL----NMVEGVLLVVDSVEGPMPQTRFVLKKALEF------GHAVVVVVNKIDRPSARPDYVIN--- 226 (512)
Q Consensus 163 ---~~~~~~~~~~~----~~~d~~llvida~~g~~~~~~~~l~~~~~~------~~p~ivviNK~Dl~~~~~~~~~~--- 226 (512)
.++...+..++ +.+|++|+|+|+.. .......+++.+.+. +.|+++|+||+|+.+.+.++.+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~ 164 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTE 164 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcc
Confidence 55666666665 88999999999874 666666767777664 68999999999998765544442
Q ss_pred --hhHHHHHHhcCCccccccceeeeccc-----cCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 227 --STFELFIELNATDEQCDFQAIYASGI-----QGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 227 --~~~~~~~~~~~~~~~~~~pvi~~Sa~-----~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.+.++....+. .++..++. .+. ++.+||+.|.+.++.
T Consensus 165 ~~~l~~l~~~~g~-------~~~~~~~~~~~~~~~~----------~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 165 NRALRELVAECGG-------RVCAFDNRATGREQEA----------QVEQLLGMVEGLVLE 208 (247)
T ss_dssp CHHHHHHHHHTTT-------CEEECCTTCCHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCC-------eEEEEeCCCCccccHH----------HHHHHHHHHHHHHHH
Confidence 24444444332 23333332 245 889999999888753
No 151
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=173.23 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=110.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+|+|++|+|||||+++|+...+... ..|+......+.+.+..++||||||+++|..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-------------------~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-------------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-------------------EEETTEEEEEEEETTEEEEEEECC-----CC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-------------------ccccceEEEEEecCcEEEEEEECCCCHhHHH
Confidence 456899999999999999999976543211 1133344456778889999999999999999
Q ss_pred HHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH-c---CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcccc
Q 010392 168 EVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE-F---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~-~---~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (512)
.+..+++.+|++|+|+|+++. .......++..+.. . ++|+++|+||+|+..... .+++...+.... ....
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~i~~~~~~~~--~~~~ 299 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS--LRHR 299 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTCTT--CCSS
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---HHHHHHHhchhh--hhcC
Confidence 999999999999999998763 23333444444333 2 789999999999976432 223333332111 1224
Q ss_pred ccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 243 ~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
.++++++||++|. |+++|++.|.+.+.
T Consensus 300 ~~~~~~vSAk~g~----------gi~el~~~l~~~l~ 326 (329)
T 3o47_A 300 NWYIQATCATSGD----------GLYEGLDWLSNQLR 326 (329)
T ss_dssp CEEEEECBTTTTB----------THHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCc----------CHHHHHHHHHHHHH
Confidence 5789999999999 99999999988764
No 152
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.75 E-value=2e-18 Score=181.22 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=96.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|++|+|||||+|+|++........ ..|+|.+.....+.+++..++||||||+.++...
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~---------------~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ 297 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSH---------------MPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEE 297 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCceEEEEEEEEEECCeEEEEEECCCCCcchhH
Confidence 4579999999999999999998764322111 1266777777788889999999999999887654
Q ss_pred HHH--------HHHhccEEEEEEeCCCCCch----hHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 169 VER--------ILNMVEGVLLVVDSVEGPMP----QTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 169 ~~~--------~~~~~d~~llvida~~g~~~----~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
+.. ++..+|++|+|+|++++... ....++..+. ++|+++|+||+|+....... . +.+...+
T Consensus 298 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~-~----~~l~~~~ 370 (476)
T 3gee_A 298 IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL-I----RAIADGT 370 (476)
T ss_dssp ----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH-H----HHHHHHH
T ss_pred HHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh-H----HHHHhcC
Confidence 433 46789999999999987655 3444444433 68999999999997654221 1 1122211
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC-CC
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP-GP 281 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp-~p 281 (512)
..+++++||++|. |+++|+++|.+.++ .+
T Consensus 371 ------~~~~i~vSAktg~----------GI~eL~~~i~~~~~~~~ 400 (476)
T 3gee_A 371 ------GTEVIGISALNGD----------GIDTLKQHMGDLVKNLD 400 (476)
T ss_dssp ------TSCEEECBTTTTB----------SHHHHHHHHTHHHHSSC
T ss_pred ------CCceEEEEECCCC----------CHHHHHHHHHHHHhhcc
Confidence 1368999999999 99999999999886 44
No 153
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.74 E-value=1.2e-18 Score=175.53 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=110.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-eeEEEEeCCCCCC--
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSD-- 164 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~i~liDtPG~~~-- 164 (512)
.+.+|+|+|.+|+|||||+++|+.....+...+ ..|+......+.+.+ ..+.||||||+.+
T Consensus 157 ~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~----------------ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a 220 (342)
T 1lnz_A 157 VLADVGLVGFPSVGKSTLLSVVSSAKPKIADYH----------------FTTLVPNLGMVETDDGRSFVMADLPGLIEGA 220 (342)
T ss_dssp CCCCEEEESSTTSSHHHHHHHSEEECCEESSTT----------------SSCCCCCEEEEECSSSCEEEEEEHHHHHHHT
T ss_pred hcCeeeeeCCCCCCHHHHHHHHHcCCCccccCC----------------ccccCceEEEEEeCCCceEEEecCCCCcccc
Confidence 356899999999999999999987643222211 234455555666765 7899999999642
Q ss_pred -----ChHHHHHHHHhccEEEEEEeCCC----CCchhHHHHHHHHHHc-----CCcEEEEEeccCCCCCCchhhHhhhHH
Q 010392 165 -----FGGEVERILNMVEGVLLVVDSVE----GPMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFE 230 (512)
Q Consensus 165 -----~~~~~~~~~~~~d~~llvida~~----g~~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~~~~~~~~~~~~~~ 230 (512)
+.....+.+..+|++|+|+|+++ ........++..+..+ ++|+++|+||+|+...+ +..+++.+
T Consensus 221 ~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~ 298 (342)
T 1lnz_A 221 HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKE 298 (342)
T ss_dssp TCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHH
T ss_pred cccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHH
Confidence 33445556677999999999875 2334455666666663 68999999999987532 22222222
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.+.. .++++++||+++. |+++|++.|.+.+...
T Consensus 299 ---~l~~-----~~~v~~iSA~tg~----------gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 299 ---KLTD-----DYPVFPISAVTRE----------GLRELLFEVANQLENT 331 (342)
T ss_dssp ---HCCS-----CCCBCCCSSCCSS----------TTHHHHHHHHHHHTSC
T ss_pred ---Hhhc-----CCCEEEEECCCCc----------CHHHHHHHHHHHHhhC
Confidence 2211 1578999999999 9999999999887543
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=2.7e-17 Score=171.99 Aligned_cols=163 Identities=22% Similarity=0.237 Sum_probs=113.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...+|+++|++|+|||||+|+|++........ ..|+|.+.....+.+.+..+.+|||||+..+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~---------------~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~ 243 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP---------------IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 243 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------CC------CCEEEEETTEEEEESSCSCC-----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCC---------------CCCCcCCceEEEEEECCEEEEEEECCCCccccc
Confidence 45799999999999999999999865422111 125666666777888999999999999854322
Q ss_pred ------------HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHh
Q 010392 168 ------------EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (512)
Q Consensus 168 ------------~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~ 235 (512)
....++..+|++++|+|+..+...+...++..+...++|+++|+||+|+...+ ....+++.+.+...
T Consensus 244 ~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~ 322 (439)
T 1mky_A 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHR-EKRYDEFTKLFREK 322 (439)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCch-hhHHHHHHHHHHHH
Confidence 12457888999999999998887777777777888899999999999997543 11122232222111
Q ss_pred cCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 236 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
. ......|++++||++|. |+++|++.+.+.+
T Consensus 323 ~--~~~~~~~~~~~SA~~g~----------gv~~l~~~i~~~~ 353 (439)
T 1mky_A 323 L--YFIDYSPLIFTSADKGW----------NIDRMIDAMNLAY 353 (439)
T ss_dssp C--GGGTTSCEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred h--ccCCCCcEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 0 01123579999999999 9999999988654
No 155
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.73 E-value=1.1e-17 Score=153.61 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCC-------
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH------- 162 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~------- 162 (512)
.+|+++|++|+|||||+++|++........+ ++|.... .+.+. .+.+|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP----------------GVTRKII--EIEWK--NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST----------------TCTTSCE--EEEET--TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC----------------CccceeE--EEecC--CEEEEECCCccccccCC
Confidence 5899999999999999999998754432222 2232222 22333 7899999994
Q ss_pred ----CCChHHHHHHHHh-c---cEEEEEEeCCCC-----------CchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchh
Q 010392 163 ----SDFGGEVERILNM-V---EGVLLVVDSVEG-----------PMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDY 223 (512)
Q Consensus 163 ----~~~~~~~~~~~~~-~---d~~llvida~~g-----------~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~ 223 (512)
+.+...+..+++. + +++++|+|+... ...+..+.+..+...++|+++|+||+|+.... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~ 140 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QE 140 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HH
Confidence 3444555555554 4 466666665431 11122334455566789999999999997643 22
Q ss_pred hHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 224 VINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+..+....++........+++++||++|. |++++++.|.+.+.
T Consensus 141 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 141 ---VINFLAEKFEVPLSEIDKVFIPISAKFGD----------NIERLKNRIFEVIR 183 (190)
T ss_dssp ---HHHHHHHHHTCCGGGHHHHEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhhhhhhccCCcEEEEecCCCC----------CHHHHHHHHHHhcc
Confidence 23333333333211113468999999999 99999999988764
No 156
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.73 E-value=1.8e-17 Score=174.16 Aligned_cols=152 Identities=22% Similarity=0.269 Sum_probs=114.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCC-CCh--
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS-DFG-- 166 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~-~~~-- 166 (512)
.+|+++|.+|+|||||+|+|++......... .++|.+.....+.+++..+.||||||+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~---------------~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ 308 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDI---------------PGTTRDVISEEIVIRGILFRIVDTAGVRSETNDL 308 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCS---------------SCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCC---------------CCeeeeeEEEEEecCCeEEEEEECCCccccchhh
Confidence 6899999999999999999998754322111 1556666667788889999999999998 654
Q ss_pred ------HHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 167 ------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 167 ------~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
.....++..+|++|+|+|++++...+..++++.+ .++|+++|+||+|+.... ..+++.+.+ .
T Consensus 309 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~---~~~~~~~~~---~---- 376 (482)
T 1xzp_A 309 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKI---NEEEIKNKL---G---- 376 (482)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCC---CHHHHHHHH---T----
T ss_pred HHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccccc---CHHHHHHHh---c----
Confidence 3356788999999999999887666666666554 378999999999996531 122333321 1
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
..++++++||++|. |+++|++.|.+.+.
T Consensus 377 -~~~~~i~iSAktg~----------Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 377 -TDRHMVKISALKGE----------GLEKLEESIYRETQ 404 (482)
T ss_dssp -CSTTEEEEEGGGTC----------CHHHHHHHHHHHTH
T ss_pred -CCCcEEEEECCCCC----------CHHHHHHHHHHHHh
Confidence 13579999999999 99999999988754
No 157
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=1.8e-17 Score=176.28 Aligned_cols=160 Identities=17% Similarity=0.180 Sum_probs=117.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|.+|+|||||+++|++...... .+ |+......+.+++..+.||||||+.+|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~------------------T~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IP------------------TVGFNVETVTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CC------------------CSSEEEEEEESSSCEEEEEEECCCGGGS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CC------------------ccceeEEEEEeCCEEEEEEECCCcHHHH
Confidence 4568999999999999999999998764321 11 3334445677788999999999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
..+..++..+|++|+|+|+++.. ......++..+.. .++|+++|+||+|+..... ..++.+.+... ....
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---~~~~~~~~~~~--~~~~ 455 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKLGLT--RIRD 455 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC---HHHHHHHTTCT--TCCS
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC---HHHHHHHhchh--hhhc
Confidence 99999999999999999988753 3333445555543 3789999999999975421 22233322111 1112
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
..++++++||++|. |+++++++|.+.+..
T Consensus 456 ~~~~~~~~SA~~g~----------gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 456 RNWYVQPSCATSGD----------GLYEGLTWLTSNYKS 484 (497)
T ss_dssp SCEEEEECBTTTTB----------THHHHHHHHHHHCC-
T ss_pred CCeEEEEEECCCCC----------CHHHHHHHHHHHHHh
Confidence 35679999999999 999999999988744
No 158
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.57 E-value=3.1e-19 Score=166.71 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=107.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
.+..+|+++|.+|+|||||+++|+.........+++ +... .....+......+.||||||+.+|.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDNY-SANVMVDGKPVNLGLWDTAGQEDYD 92 (204)
Confidence 356789999999999999999998765543322222 1111 1111223344567899999999999
Q ss_pred HHHHHHHHhccEEEEEEeCCCCCc-hhHH-HHHHHHHHc--CCcEEEEEeccCCCCCCc-hhhHhhhH--HH-HHHhcCC
Q 010392 167 GEVERILNMVEGVLLVVDSVEGPM-PQTR-FVLKKALEF--GHAVVVVVNKIDRPSARP-DYVINSTF--EL-FIELNAT 238 (512)
Q Consensus 167 ~~~~~~~~~~d~~llvida~~g~~-~~~~-~~l~~~~~~--~~p~ivviNK~Dl~~~~~-~~~~~~~~--~~-~~~~~~~ 238 (512)
..+..++..+|++++|+|+++... .... .|+..+... ++|+++|+||+|+...+. .+...+.. .. .......
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 989999999999999999876432 2222 455555555 789999999999975321 00000000 00 0000000
Q ss_pred cccccc-ceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 239 DEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 239 ~~~~~~-pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
.....+ +++++||++|. |++++++.|.+.
T Consensus 173 ~~~~~~~~~~~vSA~~g~----------gi~~l~~~l~~~ 202 (204)
T 3th5_A 173 AKEIGAVKYLECSALTQR----------GLKTVFDEAIRA 202 (204)
Confidence 111233 78999999999 889999888754
No 159
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=2.9e-18 Score=180.20 Aligned_cols=156 Identities=22% Similarity=0.312 Sum_probs=112.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCC------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG------ 161 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG------ 161 (512)
..++|+|+|.+|+|||||+|+|++....... ...|+|.+.....+.|.+..+++|||||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~---------------~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVE---------------DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE 86 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTTCSSCCEEECCCC------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccC---------------CCCCcceeEEEEEEEECCceEEEEECCCCCCcch
Confidence 3578999999999999999999876443211 1237788777778888899999999999
Q ss_pred --CCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 162 --HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 162 --~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
+..+...+..++..+|++|+|+|+..+......+++..+++.++|+++|+||+|+.... .... + +..++.
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~---e-~~~lg~-- 158 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIY---D-FYSLGF-- 158 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------C---C-SGGGSS--
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHH---H-HHHcCC--
Confidence 44566677888999999999999999999888888888888899999999999986432 1011 1 111221
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
-.++++||++|. |+.+|++.+.+.++.
T Consensus 159 ----~~~~~iSA~~g~----------gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 159 ----GEPYPISGTHGL----------GLGDLLDAVAEHFKN 185 (456)
T ss_dssp ----SSEEECCTTTCT----------THHHHHHHHHTTGGG
T ss_pred ----CceEEeeccccc----------chHHHHHHHHhhccc
Confidence 135799999999 999999999988764
No 160
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.72 E-value=3.8e-17 Score=162.71 Aligned_cols=161 Identities=16% Similarity=0.264 Sum_probs=109.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEE-CCeeEEEEeCCCCCCC--
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDF-- 165 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~-- 165 (512)
..+|+++|.+|+|||||+++|++....... ...+.|+......+.+ ++..+.||||||+.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~---------------~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT---------------RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG---------------GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc---------------cCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh
Confidence 468999999999999999999876332211 0124555555555554 5788999999999988
Q ss_pred ---hHHHHHHHHhccEEEEEEeCCCCCchhH-HHH---HHHHHHc--CCcEEEEEeccCCCCCCch-----hhHhhhHHH
Q 010392 166 ---GGEVERILNMVEGVLLVVDSVEGPMPQT-RFV---LKKALEF--GHAVVVVVNKIDRPSARPD-----YVINSTFEL 231 (512)
Q Consensus 166 ---~~~~~~~~~~~d~~llvida~~g~~~~~-~~~---l~~~~~~--~~p~ivviNK~Dl~~~~~~-----~~~~~~~~~ 231 (512)
...+..+++.+|++|+|+|+++...... ..| +..+... ++|+++|+||+|+...+.. ...+++.++
T Consensus 68 ~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~ 147 (307)
T 3r7w_A 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSET 147 (307)
T ss_dssp HHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHH
Confidence 5667788899999999999987643332 233 3333332 7899999999999753211 112333333
Q ss_pred HHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 232 ~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
...++. ..++++++||++ . ++.+++..+...+-
T Consensus 148 ~~~~g~----~~~~~~~tSa~~-~----------~i~e~~~~iv~~li 180 (307)
T 3r7w_A 148 SSEFGF----PNLIGFPTSIWD-E----------SLYKAWSQIVCSLI 180 (307)
T ss_dssp HHTTTC----CSCEEEECCTTS-S----------HHHHHHHHHHHTTC
T ss_pred HHHcCC----CCeEEEEeeecC-C----------hHHHHHHHHHHHHc
Confidence 333321 135799999998 5 77777777776653
No 161
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.7e-17 Score=156.05 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=102.2
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcC-ccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD-NQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGH 162 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~-~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~ 162 (512)
.....+|+|+|.+|+|||||+++|++....... ..++ |.+... ..+.+++ ..+.+|||+|.
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~--------------g~d~~~--~~i~~~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVL--------------GEDTYE--RTLMVDGESATIILLDMWEN 97 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---C--------------CTTEEE--EEEEETTEEEEEEEECCTTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCcc--------------ceeeEE--EEEEECCeeeEEEEeecCCC
Confidence 345689999999999999999999864332111 1111 222222 2233444 35789999998
Q ss_pred CC-ChHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhc
Q 010392 163 SD-FGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (512)
Q Consensus 163 ~~-~~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~ 236 (512)
.. +......+++.+|++|+|+|.++. .......|+..+.. .++|+++|+||+|+...+. ...++........
T Consensus 98 ~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~-v~~~e~~~~a~~~- 175 (211)
T 2g3y_A 98 KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE-VSVSEGRACAVVF- 175 (211)
T ss_dssp THHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC-SCHHHHHHHHHHH-
T ss_pred cchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCce-EeHHHHHHHHHHc-
Confidence 76 333334445678999999998763 23344456555553 2689999999999964321 1112222221111
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++++||++|. |++++++.|.+.+
T Consensus 176 ------~~~~~e~SAk~g~----------~v~elf~~l~~~i 201 (211)
T 2g3y_A 176 ------DCKFIETSAAVQH----------NVKELFEGIVRQV 201 (211)
T ss_dssp ------TCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred ------CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3468999999999 9999999998765
No 162
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.72 E-value=1.1e-17 Score=174.91 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=105.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 168 (512)
..+|+++|++|+|||||+|+|++......... .++|.+.....+.+++..++||||||+.++...
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~---------------~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ 288 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL---------------PGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQ 288 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC---------------TTCCHHHHHHEEEETTEEEEECC----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCC---------------CCeeEEEEEEEEEECCEEEEEEECCccccchhH
Confidence 35799999999999999999998754322211 144555555567778899999999999876544
Q ss_pred HHH--------HHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 169 VER--------ILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 169 ~~~--------~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
+.. ++..+|++|+|+|++++...+..+++..+.. .|+++|+||+|+....... .+. .+
T Consensus 289 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~~~~---~~~----~~----- 354 (462)
T 3geh_A 289 VEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLIT---SLE----YP----- 354 (462)
T ss_dssp ----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGGGST---TCC----CC-----
T ss_pred HHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcchhhH---HHH----Hh-----
Confidence 433 4577899999999999887777777776643 7999999999997543211 110 00
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
....+++++||++|. |+++|++.|.+.+...
T Consensus 355 ~~~~~~i~iSAktg~----------Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 355 ENITQIVHTAAAQKQ----------GIDSLETAILEIVQTG 385 (462)
T ss_dssp TTCCCEEEEBTTTTB----------SHHHHHHHHHHHHTTS
T ss_pred ccCCcEEEEECCCCC----------CHHHHHHHHHHHHhcc
Confidence 124579999999999 9999999999987654
No 163
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.71 E-value=3.9e-17 Score=160.01 Aligned_cols=168 Identities=15% Similarity=0.193 Sum_probs=97.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~ 164 (512)
....+|+++|++|+|||||+|+|+.........+... .....++++......+.+++ ..++||||||+.+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPS--------HRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcc--------cccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 3468999999999999999999976544322211000 00112333344444444444 4899999999854
Q ss_pred C-------hHHH-------HHHHHh-------------ccEEEEEEeCC-CCCchhHHHHHHHHHHcCCcEEEEEeccCC
Q 010392 165 F-------GGEV-------ERILNM-------------VEGVLLVVDSV-EGPMPQTRFVLKKALEFGHAVVVVVNKIDR 216 (512)
Q Consensus 165 ~-------~~~~-------~~~~~~-------------~d~~llvida~-~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl 216 (512)
+ .... ..++.. +|+++++++.. .+.......+++.+.. ++|+++|+||+|+
T Consensus 78 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 78 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADT 156 (274)
T ss_dssp CSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGG
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCC
Confidence 3 3332 445554 67889998755 4788888888888877 8999999999998
Q ss_pred CCCC-chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 217 PSAR-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 217 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.... .....+.+.+.+.. ..++++.+||.++. |+.++++.|.+.+|-
T Consensus 157 ~~~~e~~~~~~~i~~~l~~-------~~i~v~~~sa~~~~----------~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQE-------HKIKIYEFPETDDE----------EENKLVKKIKDRLPL 204 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHH-------TTCCCCCC---------------------CHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHHHHH-------cCCeEEcCCCCCCh----------hHHHHHHHHhcCCCc
Confidence 6421 12222333333322 24568999999998 889999999887653
No 164
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.70 E-value=3.3e-17 Score=150.43 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=102.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc--CCCcCccceeeeeeccchhhhhcceeEEeeeeEE---EECCeeEEEEeCCCCCC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA--KVFRDNQTVKERIMDSNDLERERGITILSKNTSI---TYNDTKINIIDTPGHSD 164 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~--~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~---~~~~~~i~liDtPG~~~ 164 (512)
.+|+++|.+|+|||||+++|++.. ......+++ |+.+......+ ......+.+|||||+++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~--------------g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATV--------------GIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------C--------------SEEEEEEEC---------CEEEEEEECSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceec--------------cEEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 579999999999999999998742 111111111 22222111111 12356899999999998
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCC--chhHHHHHHHHHHc--CCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGP--MPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~--~~~~~~~l~~~~~~--~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
|......+++.+|++++|+|.+++. ......|+..+... +.|+++|+||+|+...+ .......+....+..
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~--- 143 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEK--QRKACMSKITKELLN--- 143 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHH--HHHHHHHHHHHHTTT---
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccch--hhHHHHHHHHHHHHH---
Confidence 8887788899999999999987752 33445666665543 68999999999986532 111111111112211
Q ss_pred ccccc----eeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 241 QCDFQ----AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 241 ~~~~p----vi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
...++ ++++||++|. .++..|++.|.+.++.
T Consensus 144 ~~~~~~~~~~~~~Sa~~~~---------~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 144 KRGFPAIRDYHFVNATEES---------DALAKLRKTIINESLN 178 (184)
T ss_dssp CTTSCEEEEEEECCTTSCC---------HHHHHHHHHHHHHHHC
T ss_pred hcCCcchhheEEEecccCc---------hhHHHHHHHHHHHHhc
Confidence 11233 8999999983 1789999998876643
No 165
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.69 E-value=1.2e-16 Score=147.93 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=100.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcC-ccceeeeeeccchhhhhcceeEEeeeeEEEECCe--eEEEEeCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD-NQTVKERIMDSNDLERERGITILSKNTSITYNDT--KINIIDTPGHSD 164 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~-~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~--~i~liDtPG~~~ 164 (512)
...+|+++|.+|+|||||+++|++....... ..++ |.+... ..+.+++. .+.+|||+|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~--------------~~~~~~--~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVL--------------GEDTYE--RTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGG--------------CTTEEE--EEEEETTEEEEEEEECCCCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccccc--------------ceeEEE--EEEEECCeEEEEEEEEeccCcc
Confidence 4578999999999999999999975432211 1111 222222 22344443 567899999865
Q ss_pred -ChHHHHHHHHhccEEEEEEeCCCC-CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 165 -FGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 165 -~~~~~~~~~~~~d~~llvida~~g-~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
+......+++.+|++++|+|.++. .......|+..+.. .++|+++|+||+|+...+. ...++.......
T Consensus 69 ~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~-v~~~~~~~~a~~---- 143 (192)
T 2cjw_A 69 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXRE-VSVSEGRAXAVV---- 143 (192)
T ss_dssp --CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC-SCHHHHHHHHHH----
T ss_pred hhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcccc-ccHHHHHHHHHH----
Confidence 333445577889999999998763 22334455555543 2689999999999864221 111222211111
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
..++++++||++|. |+.++++.+.+.+
T Consensus 144 ---~~~~~~e~SA~~g~----------~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 144 ---FDXKFIETSAAVQH----------NVKELFEGIVRQV 170 (192)
T ss_dssp ---TTCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred ---hCCceEEeccccCC----------CHHHHHHHHHHHH
Confidence 13468999999999 9999999998765
No 166
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.69 E-value=3.7e-17 Score=175.22 Aligned_cols=162 Identities=18% Similarity=0.254 Sum_probs=109.0
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEee------eeEE--EECCeeEEEE
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSK------NTSI--TYNDTKINII 157 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~------~~~~--~~~~~~i~li 157 (512)
.....+|+++|.+|+|||||+++|++..+.....+++ |.++... ...+ ...+..+++|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~--------------g~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 103 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTH--------------GLNVVTKQAPNIKGLENDDELKECLFHFW 103 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceEEEEeccccccceeecCCCceEEEEEE
Confidence 4567899999999999999999999876543333322 2222211 0001 1235789999
Q ss_pred eCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcC--CcEEEEEeccCCCCCCchhhHhhhHHHHHHh
Q 010392 158 DTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG--HAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (512)
Q Consensus 158 DtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~--~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~ 235 (512)
||||++.|......+++.+|++|+|+|++.. .....|+..+...+ .|+++|+||+|+...+. ...+++.+.+...
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~-v~~~~~~~~~~~~ 180 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYN-IEQKKINERFPAI 180 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCC-CCHHHHHHHCGGG
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccc-cCHHHHHHHHHhc
Confidence 9999999998888899999999999998764 55677788887765 89999999999975431 1233344443332
Q ss_pred cCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 236 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
..+++++||++|. |+++|++.+.+.+...
T Consensus 181 -------~~~~~~vSA~~g~----------gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 181 -------ENRFHRISCKNGD----------GVESIAKSLKSAVLHP 209 (535)
T ss_dssp -------TTCEEECCC---------------CTTHHHHHHHHHTCT
T ss_pred -------CCceEEEecCccc----------CHHHHHHHHHHHHhcc
Confidence 3479999999999 8999999998876553
No 167
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.69 E-value=8.4e-17 Score=161.44 Aligned_cols=163 Identities=13% Similarity=0.163 Sum_probs=111.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe--eEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT--KINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~--~i~liDtPG~~ 163 (512)
.....+|+++|.+|+|||||+++|+.........+++ .......+..++. .+.||||||+.
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-----------------FDNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCS-----------------EEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcc-----------------cceeEEEEEECCEEEEEEEEeCCCch
Confidence 3456889999999999999999999876644433332 1111223344443 56699999999
Q ss_pred CChHHHHHHHHhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCcEEEEEeccCCCCCCc-----------hhhHhhh
Q 010392 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARP-----------DYVINST 228 (512)
Q Consensus 164 ~~~~~~~~~~~~~d~~llvida~~g~~~~~~--~~l~~~~~~--~~p~ivviNK~Dl~~~~~-----------~~~~~~~ 228 (512)
+|...+..++..+|++++|+|+++....... .|+..+... ++|+++|+||+|+..... ....++.
T Consensus 215 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 9988888889999999999999875432222 455566555 789999999999864310 0011112
Q ss_pred HHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
.+.....+ ..+++++||++|. |+.++++.|.+.+..|
T Consensus 295 ~~~~~~~~------~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 295 LAMAKEIG------AVKYLECSALTQR----------GLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HHHHHHTT------CSEEEECCTTTCT----------THHHHHHHHHHHHHC-
T ss_pred HHHHHHcC------CcEEEEecCCCCc----------CHHHHHHHHHHHHhcC
Confidence 22222211 1379999999999 9999999998876443
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.69 E-value=1.6e-16 Score=147.69 Aligned_cols=157 Identities=19% Similarity=0.237 Sum_probs=109.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCCCCCCC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtPG~~~~ 165 (512)
...+|+++|+.|+|||||+++|++..+.....++. |.+ .....+.+.+ ..+.+|||||+..+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~--------------~~~--~~~~~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI--------------GVE--FATRSIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCC--------------SCE--EEEEEEEETTEEEEEEEEECSSGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc--------------cee--EEEEEEEECCEEEEEEEEECCCchhh
Confidence 46789999999999999999999876644333322 222 2233445555 46789999999988
Q ss_pred hHHHHHHHHhccEEEEEEeCCCCCc-hhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccc
Q 010392 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (512)
Q Consensus 166 ~~~~~~~~~~~d~~llvida~~g~~-~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (512)
...+..++..+|++++|+|..+... .....|+..+.. .+.|+++++||+|+.... ....++.+.+....
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~-~~~~~~a~~l~~~~------ 140 (199)
T 2f9l_A 68 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR-AVPTDEARAFAEKN------ 140 (199)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHT------
T ss_pred hhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc-CcCHHHHHHHHHHc------
Confidence 8777888889999999999887432 333445555543 357999999999986432 11122333333221
Q ss_pred cccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 242 ~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++.+||+++. |+.++++.|.+.+
T Consensus 141 -~~~~~d~Sal~~~----------~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 141 -NLSFIETSALDST----------NVEEAFKNILTEI 166 (199)
T ss_dssp -TCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred -CCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3468889999998 8999998888765
No 169
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=3.3e-16 Score=147.48 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=91.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|++|+|||||+++|++.......... ..++.. .+....+.+|||||+.++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~---------------~~~~~~-----~~~~~~~~l~Dt~G~~~~~ 69 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---------------EPLSAA-----DYDGSGVTLVDFPGHVKLR 69 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCS---------------SCEEET-----TGGGSSCEEEECCCCGGGT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeec---------------CceEEE-----EeeCceEEEEECCCcHHHH
Confidence 45788999999999999999999987643211000 011111 1145689999999999999
Q ss_pred HHHHHHHHh----ccEEEEEEeCC-C-CCchhHHHHHHHHHH-------cCCcEEEEEeccCCCCCCc-hhhHhhhHHHH
Q 010392 167 GEVERILNM----VEGVLLVVDSV-E-GPMPQTRFVLKKALE-------FGHAVVVVVNKIDRPSARP-DYVINSTFELF 232 (512)
Q Consensus 167 ~~~~~~~~~----~d~~llvida~-~-g~~~~~~~~l~~~~~-------~~~p~ivviNK~Dl~~~~~-~~~~~~~~~~~ 232 (512)
..+..++.. +|++|+|+|+. + ........++..+.. .++|+++|+||+|+..... ....+.+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~ 149 (218)
T 1nrj_B 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 149 (218)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHH
Confidence 888888887 89999999987 2 233334444444432 4789999999999986543 22333333322
Q ss_pred HHhcCCccccccceeeeccccCc
Q 010392 233 IELNATDEQCDFQAIYASGIQGK 255 (512)
Q Consensus 233 ~~~~~~~~~~~~pvi~~Sa~~g~ 255 (512)
..+.. ....+++++||++|.
T Consensus 150 ~~~~~---~~~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 150 QKVIE---RRKKSLNEVERKINE 169 (218)
T ss_dssp HHHHH---HHHHHHHC-------
T ss_pred HHHHH---HHhcccccccccccc
Confidence 22211 113468999999887
No 170
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.66 E-value=5.3e-16 Score=143.38 Aligned_cols=158 Identities=19% Similarity=0.230 Sum_probs=110.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe--eEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT--KINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~--~i~liDtPG~~~ 164 (512)
+...+|+++|+.|+|||||+++|++........+++ +. ......+.+.+. .+.+|||||+.+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~--------------~~--~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI--------------GV--EFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCC--------------SE--EEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc--------------ce--EEEEEEEEECCEEEEEEEEECCCCcc
Confidence 346899999999999999999999876654443332 22 223344555554 456799999999
Q ss_pred ChHHHHHHHHhccEEEEEEeCCCCC-chhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCcc
Q 010392 165 FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (512)
Q Consensus 165 ~~~~~~~~~~~~d~~llvida~~g~-~~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (512)
+...+..++..+|++++|+|..+.. ......|+..+.. .+.|+++++||+|+.... ....+..+.+....
T Consensus 91 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~-~~~~~~a~~l~~~~----- 164 (191)
T 1oix_A 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR-AVPTDEARAFAEKN----- 164 (191)
T ss_dssp SSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHT-----
T ss_pred hhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc-ccCHHHHHHHHHHc-----
Confidence 8888888889999999999987642 2233345554443 357899999999986432 11122333333221
Q ss_pred ccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 241 ~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++++.+||+++. ++.++++.|.+.+
T Consensus 165 --~~~~ld~Sald~~----------~v~~l~~~l~~~i 190 (191)
T 1oix_A 165 --GLSFIETSALDST----------NVEAAFQTILTEI 190 (191)
T ss_dssp --TCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred --CCEEEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 3468889999999 9999999987653
No 171
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.66 E-value=5.7e-16 Score=157.39 Aligned_cols=165 Identities=22% Similarity=0.217 Sum_probs=106.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC--
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF-- 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~-- 165 (512)
..+.|+++|++|+|||||+|+|++....... ..+.|.+.....+.+++..+.+|||||+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~----------------~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp 241 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDT----------------KLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccC----------------CcccccCCEEEEEEECCEEEEEEeCCCchhcCC
Confidence 4556999999999999999999876432111 1144555666677888889999999997432
Q ss_pred ------hHHHHHHHHhccEEEEEEeCCCCC---chhHHHHHHHHHH---cCCcEEEEEeccCCCCCCchhhHhhhHHHHH
Q 010392 166 ------GGEVERILNMVEGVLLVVDSVEGP---MPQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (512)
Q Consensus 166 ------~~~~~~~~~~~d~~llvida~~g~---~~~~~~~l~~~~~---~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~ 233 (512)
...+...+..+|++++|+|+++.. ..+...+...+.. .++|+++|.||+|+.+.......+.+.....
T Consensus 242 ~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~ 321 (364)
T 2qtf_A 242 PQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSK 321 (364)
T ss_dssp GGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 112233467899999999988754 2233333344444 3679999999999975432222222222222
Q ss_pred HhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCC
Q 010392 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (512)
Q Consensus 234 ~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 282 (512)
.+.. ...+++++||++|. |++.|++.|.+.++.|.
T Consensus 322 ~l~~----~~~~~~~~SA~~g~----------gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 322 ELYS----PIFDVIPISALKRT----------NLELLRDKIYQLATQLS 356 (364)
T ss_dssp HHCS----CEEEEEECBTTTTB----------SHHHHHHHHHHHHHHHC
T ss_pred HhcC----CCCcEEEEECCCCc----------CHHHHHHHHHHHhcccC
Confidence 2211 12357999999999 99999999988775544
No 172
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.66 E-value=5e-16 Score=153.84 Aligned_cols=162 Identities=14% Similarity=0.139 Sum_probs=104.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH---
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG--- 167 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~--- 167 (512)
||+++|..|+|||||++++...... ...... +.|+......+. ...+++||||+|+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~-~~~~~~--------------~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP-LDTLYL--------------ESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS-GGGTTC--------------CCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC-Ccccee--------------cCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 5899999999999999987654322 111011 223333333332 347899999999999964
Q ss_pred HHHHHHHhccEEEEEEeCCCCCchhHHHHHH----HHHH--cCCcEEEEEeccCCCCCCc-hhhHhhhHHHHHHhcCCc-
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLK----KALE--FGHAVVVVVNKIDRPSARP-DYVINSTFELFIELNATD- 239 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~~~~~~l~----~~~~--~~~p~ivviNK~Dl~~~~~-~~~~~~~~~~~~~~~~~~- 239 (512)
.+..+++.++++|+|+|+++. ......+|. .+.. .++|+++|+||+|+...+. .+...++...-.+.....
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 468899999999999999886 444444443 2322 2689999999999975431 111222322221111111
Q ss_pred -cccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 240 -EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 240 -~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
+..+++++.+||+. . ++.+.+..+.+.+.+
T Consensus 144 ~~~~~i~f~eTSAkd-~----------nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFD-H----------SIYEAFSRIVQKLIP 174 (331)
T ss_dssp CSCCCEEEECCCSSS-S----------HHHHHHHHHHTTSST
T ss_pred ccccCceEEEeccCC-C----------cHHHHHHHHHHHHHh
Confidence 12467899999986 4 778888888776643
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.66 E-value=1.3e-15 Score=150.65 Aligned_cols=176 Identities=12% Similarity=0.157 Sum_probs=108.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc-----ceeeee------------------eccch----hh------
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ-----TVKERI------------------MDSND----LE------ 133 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~-----~~~~~~------------------~d~~~----~e------ 133 (512)
...++|+|+|.+|+|||||+|+|++......... +..... .+... .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3567899999999999999999998776421110 110000 11110 00
Q ss_pred --hhcceeEEeeeeEEEEC-CeeEEEEeCCCCCC-------------ChHHHHHHHHhccEEE-EEEeCCCCCchhHH-H
Q 010392 134 --RERGITILSKNTSITYN-DTKINIIDTPGHSD-------------FGGEVERILNMVEGVL-LVVDSVEGPMPQTR-F 195 (512)
Q Consensus 134 --~~~g~ti~~~~~~~~~~-~~~i~liDtPG~~~-------------~~~~~~~~~~~~d~~l-lvida~~g~~~~~~-~ 195 (512)
...|++.......+... ...++||||||+.+ +...+..++..++.++ +|+|+..+...+.. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00222222222222333 46899999999753 3455667787888766 79999887766654 4
Q ss_pred HHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHH
Q 010392 196 VLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 196 ~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
++..+...+.|+++|+||+|+..... ... +.+............+++++||++|. |+.+|++.+.
T Consensus 184 ~~~~~~~~~~~~i~V~NK~Dl~~~~~-~~~----~~~~~~~~~~~~~~~~v~~~SA~~~~----------gi~~l~~~l~ 248 (299)
T 2aka_B 184 IAKEVDPQGQRTIGVITKLDLMDEGT-DAR----DVLENKLLPLRRGYIGVVNRSQKDID----------GKKDITAALA 248 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCTTC-CCH----HHHTTCSSCCTTCEEECCCCCCBCTT----------SCBCHHHHHH
T ss_pred HHHHhCCCCCeEEEEEEccccCCCCc-hHH----HHHhCCcCcCCCCcEEEECCChhhcc----------ccccHHHHHH
Confidence 66666667899999999999975432 111 11211101111112478999999999 8888988887
Q ss_pred Hh
Q 010392 276 RC 277 (512)
Q Consensus 276 ~~ 277 (512)
+.
T Consensus 249 ~~ 250 (299)
T 2aka_B 249 AE 250 (299)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 174
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=148.57 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=98.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
....++|+|+|++|+|||||+|+|++.......... .++|.......+.+.+..++||||||+.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~i~liDTpG~~~~ 91 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAA--------------KSITKKCEKRSSSWKETELVVVDTPGIFDT 91 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEETTEEEEEEECCSCC--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCC--------------CceeeeEEEEEEEeCCceEEEEECCCccCC
Confidence 446789999999999999999999987664332221 145666666778889999999999998653
Q ss_pred h-------HHHHH----HHHhccEEEEEEeCCCCCchhHHHHHHHHHH-----cCCcEEEEEeccCCCCCC-chhhH---
Q 010392 166 G-------GEVER----ILNMVEGVLLVVDSVEGPMPQTRFVLKKALE-----FGHAVVVVVNKIDRPSAR-PDYVI--- 225 (512)
Q Consensus 166 ~-------~~~~~----~~~~~d~~llvida~~g~~~~~~~~l~~~~~-----~~~p~ivviNK~Dl~~~~-~~~~~--- 225 (512)
. ..+.. +++.+|++|+|+|+.. .......++..+.+ ...|+++|+||+|+.... ..+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~ 170 (239)
T 3lxx_A 92 EVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREA 170 (239)
T ss_dssp ---CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhc
Confidence 2 22223 3344699999999875 33344444444432 346999999999987532 22121
Q ss_pred -hhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 226 -NSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+.+.++....+. .+++.++..+.+ ....++.+||+.+...+
T Consensus 171 ~~~l~~l~~~~~~-------~~~~~~~~~~~~-----~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 171 PEDIQDLMDIFGD-------RYCALNNKATGA-----EQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp CHHHHHHHHHHSS-------SEEECCTTCCHH-----HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCC-------EEEEEECCCCcc-----ccHHHHHHHHHHHHHHH
Confidence 234444443332 244444432200 00017788888887765
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.65 E-value=3.3e-15 Score=145.26 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=85.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|++|+|||||+|+|++........ ..+.|+......+.+.+..++||||||+.+|.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP---------------FQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS---------------SCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 357899999999999999999999876432211 11445556666778899999999999998876
Q ss_pred HHHHHHHH---------hccEEEEEEeCCC-CCchhHHHHHHHHHHc-C----CcEEEEEeccCCCC
Q 010392 167 GEVERILN---------MVEGVLLVVDSVE-GPMPQTRFVLKKALEF-G----HAVVVVVNKIDRPS 218 (512)
Q Consensus 167 ~~~~~~~~---------~~d~~llvida~~-g~~~~~~~~l~~~~~~-~----~p~ivviNK~Dl~~ 218 (512)
.....+++ .+|++++|+|.+. ........++..+... + .|+++|+||+|+..
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 44433333 6799999988765 3444455666666654 2 48999999999853
No 176
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.64 E-value=1.6e-15 Score=154.29 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=107.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|.+|+|||||+++|++........ .+.|.......+...+..+.+|||||+.++.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASY----------------PFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECC----------------TTCSSCEEEEEEEETTEEEEEEECTTTSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCC----------------CCeeeceeEEEEEecCceEEEEeCCCccccc
Confidence 456789999999999999999998754311111 1234444445566678899999999986642
Q ss_pred H---------HHHHHHHhccEEEEEEeCCCCC---chhHHHHHHHHHH-c-CCcEEEEEeccCCCCCCchhhHhhhHHHH
Q 010392 167 G---------EVERILNMVEGVLLVVDSVEGP---MPQTRFVLKKALE-F-GHAVVVVVNKIDRPSARPDYVINSTFELF 232 (512)
Q Consensus 167 ~---------~~~~~~~~~d~~llvida~~g~---~~~~~~~l~~~~~-~-~~p~ivviNK~Dl~~~~~~~~~~~~~~~~ 232 (512)
. .+......+|++++|+|++... ......++..+.. . ++|+++|+||+|+.... .++++.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~ 305 (357)
T 2e87_A 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE---NIKRLEKFV 305 (357)
T ss_dssp STTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH---HHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH---HHHHHHHHH
Confidence 1 1122234589999999977642 2334455655554 2 78999999999986532 223333333
Q ss_pred HHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 233 ~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.. ..+|++++||++|. |+++|+++|.+.+
T Consensus 306 ~~-------~~~~~~~iSA~~g~----------gi~~l~~~i~~~l 334 (357)
T 2e87_A 306 KE-------KGLNPIKISALKGT----------GIDLVKEEIIKTL 334 (357)
T ss_dssp HH-------TTCCCEECBTTTTB----------THHHHHHHHHHHH
T ss_pred Hh-------cCCCeEEEeCCCCc----------CHHHHHHHHHHHH
Confidence 22 23579999999999 9999999998876
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.64 E-value=1.3e-15 Score=151.99 Aligned_cols=117 Identities=13% Similarity=0.102 Sum_probs=77.3
Q ss_pred CCeeEEEEeCCCCCC-------------ChHHHHHHHHhccEEEEEEeC-CCCCchhH-HHHHHHHHHcCCcEEEEEecc
Q 010392 150 NDTKINIIDTPGHSD-------------FGGEVERILNMVEGVLLVVDS-VEGPMPQT-RFVLKKALEFGHAVVVVVNKI 214 (512)
Q Consensus 150 ~~~~i~liDtPG~~~-------------~~~~~~~~~~~~d~~llvida-~~g~~~~~-~~~l~~~~~~~~p~ivviNK~ 214 (512)
.+..++||||||+.+ +...+..++..+|++++|+|+ ..+...+. ..++..+...+.|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 346899999999864 456677788999999999996 55554444 366777777789999999999
Q ss_pred CCCCCCchhhHhhhHHHHHHhcCCccccccceeeecccc---CccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 215 DRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQ---GKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 215 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~---g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
|+..... ... +.+..........-+|++++||.+ +. |+.++++.+.+++|..
T Consensus 209 Dl~~~~~-~~~----~~~~~~~~~~~~~~~~v~~~sa~~~~~~~----------gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 209 DLMDKGT-DAM----EVLTGRVIPLTLGFIGVINRSQEDIIAKK----------SIRESLKSEILYFKNH 263 (315)
T ss_dssp TSSCSSC-CCH----HHHTTSSSCCTTCEEECCCCCHHHHSSSC----------CHHHHHHHHHHHHHTC
T ss_pred ccCCcch-HHH----HHHhCCCccCCCCeEEEecCChhhhccCC----------CHHHHHHHHHHHHhCC
Confidence 9975432 112 222111011001123455566655 44 8899999988887653
No 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=9.3e-16 Score=155.96 Aligned_cols=201 Identities=16% Similarity=0.216 Sum_probs=99.7
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCe--eEEEEeCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT--KINIIDTPGHS 163 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~--~i~liDtPG~~ 163 (512)
.....+|+|+|++|+|||||+++|+......... .+....+...++++......+.+.+. .+++|||||+.
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~-------~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERV-------IPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc-------ccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 3456889999999999999999987643221111 01111111223333333333344443 78999999994
Q ss_pred -------CChHHHH-------HHHHhc-------------cEEEEEEeC-CCCCchhHHHHHHHHHHcCCcEEEEEeccC
Q 010392 164 -------DFGGEVE-------RILNMV-------------EGVLLVVDS-VEGPMPQTRFVLKKALEFGHAVVVVVNKID 215 (512)
Q Consensus 164 -------~~~~~~~-------~~~~~~-------------d~~llvida-~~g~~~~~~~~l~~~~~~~~p~ivviNK~D 215 (512)
.|...+. .++..+ |+++++|+. ..+.......++..+ ..++|+|+|+||+|
T Consensus 107 d~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~D 185 (361)
T 2qag_A 107 DAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKAD 185 (361)
T ss_dssp ---------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCS
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCC
Confidence 3443333 555544 357777875 456665555666555 35789999999999
Q ss_pred CCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCCCCCcccccceeeeEE
Q 010392 216 RPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATN 295 (512)
Q Consensus 216 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~ 295 (512)
+...+ .+....+.+.... ...+++++++||++|.+ .+ .+..+++.|.+.+|.+....+.++.
T Consensus 186 l~~~~---ev~~~k~~i~~~~---~~~~i~~~~~Sa~~~~~-~e------~~~~l~~~i~~~ip~~vv~s~~~~~----- 247 (361)
T 2qag_A 186 TLTLK---ERERLKKRILDEI---EEHNIKIYHLPDAESDE-DE------DFKEQTRLLKASIPFSVVGSNQLIE----- 247 (361)
T ss_dssp SSCHH---HHHHHHHHHHHHT---TCC-CCSCCCC----------------CHHHHHHHHHTCSCEECCCSEEC------
T ss_pred CCCHH---HHHHHHHHHHHHH---HHCCCCEEeCCCcCCCc-ch------hHHHHHHHHHhcCCCCEeCCCCccc-----
Confidence 87532 1222212222221 12356899999999984 22 5778888888888766444333221
Q ss_pred EeeeCCCcEEEEEEEee-cccCC
Q 010392 296 LEYDEHKGRIAIGRLHA-GVLRK 317 (512)
Q Consensus 296 ~~~~~~~G~v~~grV~s-G~l~~ 317 (512)
..|+.+.||.|. |.+.+
T Consensus 248 -----~~g~~~~gr~ypwg~~~v 265 (361)
T 2qag_A 248 -----AKGKKVRGRLYPWGVVEV 265 (361)
T ss_dssp ----------CEEECCSSCCEES
T ss_pred -----cCCeEEEEEecCCceEec
Confidence 136666677663 55443
No 179
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.59 E-value=5.2e-15 Score=138.32 Aligned_cols=163 Identities=17% Similarity=0.231 Sum_probs=103.0
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.....+|+++|++|+|||||+++|++..+.....+ ..|.+.... .+.+.+ .+.+|||||+.+.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~--------------~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK--------------TPGRTQLIN--LFEVAD-GKRLVDLPGYGYA 85 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEE--EEEEET-TEEEEECCCCC--
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC--------------CCccceeeE--EEEecC-CEEEEECcCCccc
Confidence 34456899999999999999999986542111111 113333222 233333 6889999998642
Q ss_pred ----------hHHHHHHH---HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchh-hHhhhHHH
Q 010392 166 ----------GGEVERIL---NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDY-VINSTFEL 231 (512)
Q Consensus 166 ----------~~~~~~~~---~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~-~~~~~~~~ 231 (512)
...+..++ ..+|++++++|+..+...........+...++|++++.||+|+....... ....+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 86 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREA 165 (210)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHH
Confidence 22233333 46899999999988765555556666677889999999999986532111 13344444
Q ss_pred HHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 232 ~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
+.+.. ..++++++||+++. |+.++++.|.+.++.
T Consensus 166 ~~~~~-----~~~~~~~~Sal~~~----------~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 166 VLAFN-----GDVQVETFSSLKKQ----------GVDKLRQKLDTWFSE 199 (210)
T ss_dssp HGGGC-----SCEEEEECBTTTTB----------SHHHHHHHHHHHHC-
T ss_pred HHhcC-----CCCceEEEeecCCC----------CHHHHHHHHHHHHhh
Confidence 43221 23568899999999 999999999887643
No 180
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=144.88 Aligned_cols=172 Identities=14% Similarity=0.186 Sum_probs=98.0
Q ss_pred cCCceEEEEEeCC---------CCcHHHHHHHHHHh---cCCCcCccceeeeeeccchhhhhc-ce-eEEe-eeeEEEEC
Q 010392 86 RSDIRNIAIIAHV---------DHGKTTLVDAMLKQ---AKVFRDNQTVKERIMDSNDLERER-GI-TILS-KNTSITYN 150 (512)
Q Consensus 86 ~~~~~~V~vvG~~---------~~GKSTLi~~Ll~~---~~~~~~~~~~~~~~~d~~~~e~~~-g~-ti~~-~~~~~~~~ 150 (512)
.....+|+++|.+ |+|||||+++|++. .......+++. -.|+....-.. +. ..+. ....+...
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLS--TSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEEC--HHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccc--ccccceeEeecccccccccccccccCCc
Confidence 3456899999999 99999999999983 33333322210 00110000000 00 0000 00112234
Q ss_pred CeeEEEEe------CCCCCCChH-----------------HHHHHHH---------------------hccEEEEEEeCC
Q 010392 151 DTKINIID------TPGHSDFGG-----------------EVERILN---------------------MVEGVLLVVDSV 186 (512)
Q Consensus 151 ~~~i~liD------tPG~~~~~~-----------------~~~~~~~---------------------~~d~~llvida~ 186 (512)
...+.||| |||...+.. .+..++. .+|++|+|+|++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 46788888 555443332 2222222 589999999988
Q ss_pred CC---CchhHHHHHHHHHH----cCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCC
Q 010392 187 EG---PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLS 259 (512)
Q Consensus 187 ~g---~~~~~~~~l~~~~~----~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~ 259 (512)
+. .......|+..+.. .++|+++|+||+|+... ..+++..++.... ..++++++||++|.
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~---~~v~~~~~~~~~~------~~~~~~e~SAk~g~---- 240 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE---RYIRDAHTFALSK------KNLQVVETSARSNV---- 240 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH---HHHHHHHHHHHTS------SSCCEEECBTTTTB----
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc---HHHHHHHHHHHhc------CCCeEEEEECCCCC----
Confidence 74 44445556655543 37899999999998642 1223333332211 24579999999999
Q ss_pred CCCcCCCchhhHHHHHHhC
Q 010392 260 PDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 260 ~~~~~~gi~~Ll~~i~~~l 278 (512)
|+.++++.|.+.+
T Consensus 241 ------gv~elf~~l~~~l 253 (255)
T 3c5h_A 241 ------NVDLAFSTLVQLI 253 (255)
T ss_dssp ------SHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHh
Confidence 9999999988754
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.57 E-value=1.2e-14 Score=159.72 Aligned_cols=182 Identities=18% Similarity=0.242 Sum_probs=110.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee---------------eeeeccch--------hhh----------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK---------------ERIMDSND--------LER---------- 134 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~---------------~~~~d~~~--------~e~---------- 134 (512)
...+|+|+|++|+|||||+|+|++....+....+.. ..+.|... .+.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 567899999999999999999998765433221111 00000000 000
Q ss_pred -----hcceeEEeeeeEEEECC----eeEEEEeCCCCCC---ChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHH-HHH
Q 010392 135 -----ERGITILSKNTSITYND----TKINIIDTPGHSD---FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLK-KAL 201 (512)
Q Consensus 135 -----~~g~ti~~~~~~~~~~~----~~i~liDtPG~~~---~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~-~~~ 201 (512)
..+.........+.++. ..++||||||+.+ ....+..++..+|++|+|+|++.+........|. .+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00000011122333332 4699999999765 4556678889999999999999877666666554 455
Q ss_pred HcCCcEEEEEeccCCCCCC---ch------hhHhhhHHHH----HHhcC--Cccccccceeeeccc--------------
Q 010392 202 EFGHAVVVVVNKIDRPSAR---PD------YVINSTFELF----IELNA--TDEQCDFQAIYASGI-------------- 252 (512)
Q Consensus 202 ~~~~p~ivviNK~Dl~~~~---~~------~~~~~~~~~~----~~~~~--~~~~~~~pvi~~Sa~-------------- 252 (512)
..+.|+++|+||+|+.... .+ ...+.+.+.+ ..... .......+++++||+
T Consensus 228 ~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~ 307 (695)
T 2j69_A 228 GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADL 307 (695)
T ss_dssp TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCC
T ss_pred hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhh
Confidence 5688999999999986432 11 1111232222 11110 000123479999999
Q ss_pred cCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 253 QGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 253 ~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+|. |+..|++.+.+.+.
T Consensus 308 ~~~----------Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 308 DGT----------GFPKFMDSLNTFLT 324 (695)
T ss_dssp TTS----------SHHHHHHHHHHHHH
T ss_pred hcc----------CHHHHHHHHHHHHH
Confidence 776 89999888887663
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.57 E-value=4.2e-14 Score=138.09 Aligned_cols=118 Identities=18% Similarity=0.168 Sum_probs=82.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|++|+|||||+|+|++......... .+.|.......+.+.+..++||||||+.++.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF---------------QSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS---------------SCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCC---------------CCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 3468999999999999999999997654322111 1334444445567788899999999998765
Q ss_pred H---HHHHHH------HhccEEEEEEeCCC-CCchhHHHHHHHHHHc-C----CcEEEEEeccCCCCC
Q 010392 167 G---EVERIL------NMVEGVLLVVDSVE-GPMPQTRFVLKKALEF-G----HAVVVVVNKIDRPSA 219 (512)
Q Consensus 167 ~---~~~~~~------~~~d~~llvida~~-g~~~~~~~~l~~~~~~-~----~p~ivviNK~Dl~~~ 219 (512)
. .....+ ..+|++|+|+|.+. ........++..+... + .|+++|+||+|+...
T Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 102 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2 222222 25899999988755 3444555677666543 3 599999999998643
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.57 E-value=7.1e-15 Score=151.36 Aligned_cols=157 Identities=17% Similarity=0.257 Sum_probs=105.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-eeEEEEeCCCCCCC-
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSDF- 165 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~i~liDtPG~~~~- 165 (512)
....|+|+|++|+|||||+++|++......... ..|+......+.+.+ ..+++|||||+.+.
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~----------------ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a 219 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYP----------------FTTLSPNLGVVEVSEEERFTLADIPGIIEGA 219 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCT----------------TCSSCCEEEEEECSSSCEEEEEECCCCCCCG
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcc----------------cceecceeeEEEecCcceEEEEeccccccch
Confidence 345699999999999999999986533211111 223334444556664 78999999998642
Q ss_pred ------hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc-----CCcEEEEEeccCCCCCCchhhHhhhHHHHHH
Q 010392 166 ------GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFELFIE 234 (512)
Q Consensus 166 ------~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~ 234 (512)
.......+..+|.+|+++|+......+...+++.+..+ ..|.++|+||+|+... ..++++.+.+..
T Consensus 220 ~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~ 296 (416)
T 1udx_A 220 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAR 296 (416)
T ss_dssp GGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHh
Confidence 23334456679999999998722223333333333332 5799999999998653 334444444332
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
. .++++++||+++. |+++|++.|.+.+..
T Consensus 297 ~-------g~~vi~iSA~~g~----------gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 297 E-------GLAVLPVSALTGA----------GLPALKEALHALVRS 325 (416)
T ss_dssp T-------TSCEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred c-------CCeEEEEECCCcc----------CHHHHHHHHHHHHHh
Confidence 1 3468999999999 999999999987744
No 184
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.9e-15 Score=135.09 Aligned_cols=126 Identities=22% Similarity=0.307 Sum_probs=83.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~ 166 (512)
....+|+++|+.|+|||||+++|++.......... ..+++ ..+.+..+.+|||||+.++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~-------------~~~~~-------~~~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-------------EPLSA-------ADYDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccC-------------CCcee-------eeecCCeEEEEECCCCchHH
Confidence 45678999999999999999999987543210000 00111 11256789999999999998
Q ss_pred HHHHHHHHh----ccEEEEEEeCC-CC-CchhHHHHHHHHHH-------cCCcEEEEEeccCCCCCC-chhhHhhhHHHH
Q 010392 167 GEVERILNM----VEGVLLVVDSV-EG-PMPQTRFVLKKALE-------FGHAVVVVVNKIDRPSAR-PDYVINSTFELF 232 (512)
Q Consensus 167 ~~~~~~~~~----~d~~llvida~-~g-~~~~~~~~l~~~~~-------~~~p~ivviNK~Dl~~~~-~~~~~~~~~~~~ 232 (512)
..+..++.. +|++|+|+|+. .. .......++..+.. .++|+++|+||+|+.... ..+..+.+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l 185 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 185 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHH
Confidence 777777776 89999999988 31 22233344433332 378999999999997643 334444444433
No 185
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.52 E-value=2.9e-14 Score=144.72 Aligned_cols=175 Identities=14% Similarity=0.171 Sum_probs=103.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcc-----ceeeee------------------eccchhh--------h-
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ-----TVKERI------------------MDSNDLE--------R- 134 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~-----~~~~~~------------------~d~~~~e--------~- 134 (512)
...++|+|+|.+|+|||||+|+|++..+.....+ +..... .+..... +
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 3467899999999999999999998765422111 110000 1111000 0
Q ss_pred ---hcceeEEeeeeEEEEC-CeeEEEEeCCCCCC-------------ChHHHHHHHHhc-cEEEEEEeCCCCCchhHH-H
Q 010392 135 ---ERGITILSKNTSITYN-DTKINIIDTPGHSD-------------FGGEVERILNMV-EGVLLVVDSVEGPMPQTR-F 195 (512)
Q Consensus 135 ---~~g~ti~~~~~~~~~~-~~~i~liDtPG~~~-------------~~~~~~~~~~~~-d~~llvida~~g~~~~~~-~ 195 (512)
..|+........+... ...++||||||+.+ +...+..++..+ +.+++|+|+..+...+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0233322222333333 47899999999753 233455566554 456667788776665554 3
Q ss_pred HHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHH
Q 010392 196 VLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 196 ~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
+++.+...+.|+++|+||+|+.+.... . .+.+..........-++++++||++|. |+.+|++.+.
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~----~~~~~~~~~~l~~~~~~v~~~SA~~~~----------~i~~l~~~l~ 253 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMDEGTD-A----RDVLENKLLPLRRGYIGVVNRSQKDID----------GKKDITAALA 253 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSCTTCC-C----HHHHTTCSSCCTTCEEECCCCCHHHHH----------TTCCHHHHHH
T ss_pred HHHHhCcCCCceEEEeccccccCcchh-H----HHHHhCCcccccCCceEEEeCCccccc----------ccccHHHHHH
Confidence 666666678999999999999754321 1 111111101111112468999999999 7788888776
Q ss_pred H
Q 010392 276 R 276 (512)
Q Consensus 276 ~ 276 (512)
+
T Consensus 254 ~ 254 (353)
T 2x2e_A 254 A 254 (353)
T ss_dssp H
T ss_pred H
Confidence 5
No 186
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.52 E-value=1.3e-14 Score=147.46 Aligned_cols=173 Identities=17% Similarity=0.160 Sum_probs=103.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhh------------------hhcceeEEeeee--
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLE------------------RERGITILSKNT-- 145 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e------------------~~~g~ti~~~~~-- 145 (512)
....++|+++|++|+|||||+++|............ +.|.++.. ...+..+.....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~----vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~ 151 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVA----VLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSG 151 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE----EEEEC----------------CHHHHTCTTEEEECCC--C
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceE----EEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCc
Confidence 446788999999999999999999765311111000 01111000 011121111000
Q ss_pred --------------EEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEE
Q 010392 146 --------------SITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVV 211 (512)
Q Consensus 146 --------------~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivvi 211 (512)
.+.+.+..+.||||||... .....+..+|.+|+|+|+..+...+... . ...++|.++|+
T Consensus 152 ~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVl 224 (355)
T 3p32_A 152 TLGGVTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVV 224 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEE
T ss_pred cccchhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEE
Confidence 1133567899999999654 2334568899999999987654332211 0 01236999999
Q ss_pred eccCCCCC-CchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 212 NKIDRPSA-RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 212 NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
||+|+... ......+++.+.+............|++++||++|. |+++|++.|.+.++
T Consensus 225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~----------Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGR----------GLAELWDTVERHRQ 283 (355)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB----------SHHHHHHHHHHHHH
T ss_pred ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCC----------CHHHHHHHHHHHHH
Confidence 99998643 122333444444433322222234689999999999 99999999988764
No 187
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=2e-14 Score=145.08 Aligned_cols=177 Identities=13% Similarity=0.074 Sum_probs=99.6
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcC--------cccee---eeeeccchhhh----hcceeEEeee-----
Q 010392 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD--------NQTVK---ERIMDSNDLER----ERGITILSKN----- 144 (512)
Q Consensus 85 ~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~--------~~~~~---~~~~d~~~~e~----~~g~ti~~~~----- 144 (512)
.......|+++|++|+|||||+++|++....... ..... ....|....+. .++. +....
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~-i~~~~~~~~l 130 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAF-IRPVPSSGHL 130 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEE-EEEECC----
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCce-eecCcccccc
Confidence 3456788999999999999999999864211000 00000 00111111100 1111 10000
Q ss_pred -----------eEEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEec
Q 010392 145 -----------TSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNK 213 (512)
Q Consensus 145 -----------~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK 213 (512)
..+.+.+..++||||||+.++... ....+|++++|+|+..+...+.... ...++|.++|+||
T Consensus 131 ~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK 203 (341)
T 2p67_A 131 GGASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINK 203 (341)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECC
T ss_pred chhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEEC
Confidence 011256789999999999876543 4688999999999876533221111 1124689999999
Q ss_pred cCCCCC-CchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 214 IDRPSA-RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 214 ~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
+|+... +.....+++.+.+..+.........+++++||++|. |++.|++.|.+.++
T Consensus 204 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~----------gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKR----------GIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTB----------SHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 998753 222333344444332221111113468999999999 99999999887653
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.50 E-value=8.8e-15 Score=150.29 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=45.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEE---------------------E
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI---------------------T 148 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~---------------------~ 148 (512)
.+|+++|.+|+|||||+|+|++........+ ++|+....... .
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p----------------~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~ 64 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYP----------------FTTIEANVGVTYAITDHPCKELGCSPNPQNYEY 64 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCC----------------CcccCCceEEEeeccCCchHHhhhhcccccccc
Confidence 3799999999999999999997652111111 12222221111 1
Q ss_pred EC---CeeEEEEeCCCCCCChH----HH---HHHHHhccEEEEEEeCCCC
Q 010392 149 YN---DTKINIIDTPGHSDFGG----EV---ERILNMVEGVLLVVDSVEG 188 (512)
Q Consensus 149 ~~---~~~i~liDtPG~~~~~~----~~---~~~~~~~d~~llvida~~g 188 (512)
+. ...+.||||||+.+... .. ..+++.+|++++|+|+.++
T Consensus 65 ~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 65 RNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 12 25799999999865321 11 1346889999999999875
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.45 E-value=3.4e-13 Score=137.19 Aligned_cols=160 Identities=16% Similarity=0.242 Sum_probs=96.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee------------------eeee--------ccchhh--------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------------------ERIM--------DSNDLE-------- 133 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~------------------~~~~--------d~~~~e-------- 133 (512)
..+.|+|+|++|+|||||+|+|++..+.....+.+. ..+. |+....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 355899999999999999999999765333222211 0000 000000
Q ss_pred ----hhcceeEEeeeeEEEE-CCeeEEEEeCCCCCCC-------------hHHHHHHHHhccEEEEEEeCCC-CCc-hhH
Q 010392 134 ----RERGITILSKNTSITY-NDTKINIIDTPGHSDF-------------GGEVERILNMVEGVLLVVDSVE-GPM-PQT 193 (512)
Q Consensus 134 ----~~~g~ti~~~~~~~~~-~~~~i~liDtPG~~~~-------------~~~~~~~~~~~d~~llvida~~-g~~-~~~ 193 (512)
...+++...-...+.. ....++||||||+.++ ...+..++..+|++|+|+|+.. ... ...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0111111111122222 2457999999999887 6677788999999999998643 222 233
Q ss_pred HHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCc
Q 010392 194 RFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGK 255 (512)
Q Consensus 194 ~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~ 255 (512)
..++..+...+.|+++|+||+|+...... . .+.+.. .......+++++|+.++.
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~----~~~~~~---~~~~~~~~~~~v~~~s~~ 246 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTD-A----VEILEG---RSFKLKYPWVGVVNRSQA 246 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCC-S----HHHHTT---SSSCCSSCCEEECCCCHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCccc-H----HHHHcC---ccccccCCeEEEEECChH
Confidence 44444444557899999999999754311 1 111111 122335678999999887
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.44 E-value=5.6e-14 Score=132.48 Aligned_cols=171 Identities=16% Similarity=0.133 Sum_probs=100.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeee---eccchhhhhcceeEEe-ee---eEE----------E
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERI---MDSNDLERERGITILS-KN---TSI----------T 148 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~---~d~~~~e~~~g~ti~~-~~---~~~----------~ 148 (512)
....++|+++|++|+|||||+++|+...........+.... .|....+ ..|.++.. .. ..+ .
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHh
Confidence 34678999999999999999999998753321111111000 0111111 11332111 11 011 2
Q ss_pred ECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhh
Q 010392 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINST 228 (512)
Q Consensus 149 ~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~ 228 (512)
+.+..+.+|||+|+.+.... +....+.+++|+|+..+... .+......+.|.++|+||+|+.... ....+++
T Consensus 106 ~~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~ 177 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAV-GADVEKM 177 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHH-TCCHHHH
T ss_pred cCCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcch-hhHHHHH
Confidence 34678999999995221110 01246789999998876422 2222334568999999999985321 0123334
Q ss_pred HHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.+.+..+.. .++++++||++|. |+.++++.|.+.+..
T Consensus 178 ~~~~~~~~~-----~~~i~~~Sa~~g~----------gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 178 KADAKLINP-----RAKIIEMDLKTGK----------GFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHCT-----TSEEEECBTTTTB----------THHHHHHHHHHHHC-
T ss_pred HHHHHHhCC-----CCeEEEeecCCCC----------CHHHHHHHHHHHHHH
Confidence 444433321 3579999999999 999999999876643
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.43 E-value=7.5e-13 Score=144.65 Aligned_cols=174 Identities=13% Similarity=0.171 Sum_probs=108.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCcccee---------------eee--------eccchh------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK---------------ERI--------MDSNDL------------ 132 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~---------------~~~--------~d~~~~------------ 132 (512)
..++|+|+|..++|||||+|+|++....+...+.++ ..+ .|....
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 567899999999999999999998765322211111 000 011000
Q ss_pred hhhcceeEEeeeeEEEEC-CeeEEEEeCCCCCCC-------------hHHHHHHH-HhccEEEEEEeCCCCCchhHH-HH
Q 010392 133 ERERGITILSKNTSITYN-DTKINIIDTPGHSDF-------------GGEVERIL-NMVEGVLLVVDSVEGPMPQTR-FV 196 (512)
Q Consensus 133 e~~~g~ti~~~~~~~~~~-~~~i~liDtPG~~~~-------------~~~~~~~~-~~~d~~llvida~~g~~~~~~-~~ 196 (512)
....+++-......+.++ ...++|+||||.... ...+..++ ..+|.+|+|+|+..+...+.. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 001233322223334443 347999999997651 12333444 467999999999988777666 67
Q ss_pred HHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHH
Q 010392 197 LKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (512)
Q Consensus 197 l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~ 276 (512)
+..+...+.|+++|+||+|+...... .. ...............+++++||++|. |++.|++.+.+
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~~~~--~~---~il~~~~~~l~lg~~~VV~iSA~~G~----------GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDEGTD--AR---DVLENKLLPLRRGYIGVVNRSQKDID----------GKKDITAALAA 274 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCTTCC--SH---HHHTTCSSCCSSCEEECCCCCCEESS----------SSEEHHHHHHH
T ss_pred HHHHHhcCCCEEEEEeCcccCCcchh--hH---HHHHHHhhhhhccCCceEEecccccc----------cchhHHHHHHH
Confidence 78888888999999999999754311 11 11110000001112478999999999 88888888775
No 192
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.43 E-value=4.1e-13 Score=143.59 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=88.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCC---CcCcccee--eeeeccchhhhhcceeE------------------Eee
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKV---FRDNQTVK--ERIMDSNDLERERGITI------------------LSK 143 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~---~~~~~~~~--~~~~d~~~~e~~~g~ti------------------~~~ 143 (512)
...++|+|+|.+|+|||||+|+|++.... ....+.+. ..+......+...|.++ ...
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999987653 11111111 01111000000001110 001
Q ss_pred eeEEEECC---eeEEEEeCCCCCC-----------ChHHHHHHHHhccEEEEEEeCCC-CCchhHHHHHHHHHHcCCcEE
Q 010392 144 NTSITYND---TKINIIDTPGHSD-----------FGGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFGHAVV 208 (512)
Q Consensus 144 ~~~~~~~~---~~i~liDtPG~~~-----------~~~~~~~~~~~~d~~llvida~~-g~~~~~~~~l~~~~~~~~p~i 208 (512)
...+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|+.+ +...+...++..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 11222222 3689999999976 56777888999999999999987 577788888888887789999
Q ss_pred EEEeccCCCC
Q 010392 209 VVVNKIDRPS 218 (512)
Q Consensus 209 vviNK~Dl~~ 218 (512)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999875
No 193
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.39 E-value=8.7e-13 Score=133.15 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=94.1
Q ss_pred ceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-----------CchhHHHHHHHHHH---
Q 010392 137 GITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-----------PMPQTRFVLKKALE--- 202 (512)
Q Consensus 137 g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-----------~~~~~~~~l~~~~~--- 202 (512)
..|+......+.+++..+.+|||+|++.|...|..+++.++++|+|+|.++. .......++..+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 3455555667788899999999999999999999999999999999998762 23444556666554
Q ss_pred -cCCcEEEEEeccCCCCC------------------CchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCc
Q 010392 203 -FGHAVVVVVNKIDRPSA------------------RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNL 263 (512)
Q Consensus 203 -~~~p~ivviNK~Dl~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~ 263 (512)
.++|+++|+||+|+... +.++..+-+...|..+........++++++||++|.
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~-------- 329 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK-------- 329 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH--------
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch--------
Confidence 26899999999998521 112222223333333322112245778999999999
Q ss_pred CCCchhhHHHHHHhC
Q 010392 264 ADDLGPLFESIMRCI 278 (512)
Q Consensus 264 ~~gi~~Ll~~i~~~l 278 (512)
|+..+++++.+.+
T Consensus 330 --nV~~vF~~v~~~i 342 (353)
T 1cip_A 330 --NVQFVFDAVTDVI 342 (353)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHH
Confidence 8899998887654
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=131.44 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=65.6
Q ss_pred ECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCC-chhhHhh
Q 010392 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINS 227 (512)
Q Consensus 149 ~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~-~~~~~~~ 227 (512)
..+..+.||||||.... .......+|++++|+|+..+...+. +.. .-...|.++|+||+|+.... ......+
T Consensus 164 ~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~---i~~-~il~~~~ivVlNK~Dl~~~~~~~~~~~~ 236 (349)
T 2www_A 164 GAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQG---IKR-GIIEMADLVAVTKSDGDLIVPARRIQAE 236 (349)
T ss_dssp HTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHH---hHH-HHHhcCCEEEEeeecCCCchhHHHHHHH
Confidence 35678999999997533 2344678999999999887532221 111 11357899999999986321 0111222
Q ss_pred hHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 228 TFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 228 ~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
+...+............+++++||++|. |+.+|++.|.+.+
T Consensus 237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~----------Gi~~L~~~I~~~~ 277 (349)
T 2www_A 237 YVSALKLLRKRSQVWKPKVIRISARSGE----------GISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHTTCC-----CCCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCceEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 2222211111000113478999999999 9999999988765
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.31 E-value=1.3e-11 Score=124.45 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-----------------e
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-----------------T 152 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-----------------~ 152 (512)
.+|+++|.+|+|||||+|+|++........+ +.|+......+.+++ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p----------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYP----------------FCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------C----------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCC----------------CceECceEEEEecCCcccceeeeeecccceeee
Confidence 4799999999999999999998653222111 223333333344443 5
Q ss_pred eEEEEeCCCCCCCh-------HHHHHHHHhccEEEEEEeCCC
Q 010392 153 KINIIDTPGHSDFG-------GEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 153 ~i~liDtPG~~~~~-------~~~~~~~~~~d~~llvida~~ 187 (512)
.+.||||||+.++. .....+++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 79999999998764 234567899999999999875
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.27 E-value=1.8e-11 Score=125.98 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=78.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEEC--CeeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~i~liDtPG~~~ 164 (512)
.-..+|+|+|++|+|||||++.|++............ .+. ...+........+... ...+++|||+|+.+
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~---~~~-----~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPS---HRI-----KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------------CCEEEEEECC------CEEEEEEECC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcc---cCC-----ccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 3457899999999999999999988654222111100 000 0001111111111112 23689999999976
Q ss_pred ChH------HH--------HHHH-----------Hh--ccEEEEEEeCC-CCCchhHHHHHHHHHHcCCcEEEEEeccCC
Q 010392 165 FGG------EV--------ERIL-----------NM--VEGVLLVVDSV-EGPMPQTRFVLKKALEFGHAVVVVVNKIDR 216 (512)
Q Consensus 165 ~~~------~~--------~~~~-----------~~--~d~~llvida~-~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl 216 (512)
+.. .+ ..++ .. ++++|++++.+ .++......++..+.. ++|+|+|+||+|+
T Consensus 101 ~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 101 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp -------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTS
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccC
Confidence 521 11 1111 11 33456666565 5777777777777754 7999999999998
Q ss_pred CCCC-chhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 217 PSAR-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 217 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
...+ .....+++.+.+... .++++.+||.++. ++..++..+...+|
T Consensus 180 l~~~ev~~~k~~i~~~~~~~-------~i~~~~~sa~~~~----------~v~~~~~~l~~~iP 226 (418)
T 2qag_C 180 LTPEECQQFKKQIMKEIQEH-------KIKIYEFPETDDE----------EENKLVKKIKDRLP 226 (418)
T ss_dssp SCHHHHHHHHHHHHHHHHHH-------TCCCCCCC---------------------------CC
T ss_pred ccHHHHHHHHHHHHHHHHHc-------CCeEEeCCCCCCc----------CHHHHHHHHHhhCC
Confidence 7422 111123344444332 3568999999888 66666666655544
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.26 E-value=2.4e-11 Score=120.22 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE--ECCeeEEEEeCCCC--
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT--YNDTKINIIDTPGH-- 162 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~--~~~~~i~liDtPG~-- 162 (512)
....+|+|+|+.|+|||||+++|++........... +..+. ..++.+......+. .....+++|||+|+
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~-----~g~~~--~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISG-----AAEKI--ERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCccc-----CCccc--CCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 345789999999999999999987642211111000 00000 00111111111111 12357899999998
Q ss_pred -----CCChHHHH-------HHHHhcc-------------EEEEEEeCCC-CCchhHHHHHHHHHHcCCcEEEEEeccCC
Q 010392 163 -----SDFGGEVE-------RILNMVE-------------GVLLVVDSVE-GPMPQTRFVLKKALEFGHAVVVVVNKIDR 216 (512)
Q Consensus 163 -----~~~~~~~~-------~~~~~~d-------------~~llvida~~-g~~~~~~~~l~~~~~~~~p~ivviNK~Dl 216 (512)
+.+..... .++.... .++++++.+. ++.....++++.+. .+.++++|+||.|+
T Consensus 89 ~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 89 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADT 167 (301)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCC
Confidence 44544443 4444432 2555555443 46666555555543 35799999999998
Q ss_pred CCCCc-hhhHhhhHHHHHHhcCCccccccceeeeccccCccC
Q 010392 217 PSARP-DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAG 257 (512)
Q Consensus 217 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~ 257 (512)
...+. ....+++.+.+... .++++++||++| ++
T Consensus 168 ~~~~e~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 168 LTLKERERLKKRILDEIEEH-------NIKIYHLPDAES-DE 201 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHHT-------TCCCCCCC-------
T ss_pred CCHHHHHHHHHHHHHHHHHc-------CCeEEecCCccc-cc
Confidence 75321 11223444444332 356899999988 54
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.24 E-value=8.1e-11 Score=119.25 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=56.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEE---------------------
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT--------------------- 148 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~--------------------- 148 (512)
.+|+++|.+|+|||||+|+|++........+. .|+..+.....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~----------------~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~ 65 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPF----------------ATIDKNVGVVPLEDERLYALQRTFAKGERVPP 65 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCG----------------GGGSTTEEEEECCCHHHHHHHHHHCBTTBCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCC----------------ceeccceeeEecChHHHHHHHHHhcccccccc
Confidence 46999999999999999999987532221111 11111111111
Q ss_pred ECCeeEEEEeCCCCCCC-------hHHHHHHHHhccEEEEEEeCCC
Q 010392 149 YNDTKINIIDTPGHSDF-------GGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 149 ~~~~~i~liDtPG~~~~-------~~~~~~~~~~~d~~llvida~~ 187 (512)
+.+..+.||||||+.++ ......+++.+|++++|+|+.+
T Consensus 66 ~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 66 VVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 22457999999999764 2455667899999999999875
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.24 E-value=6.4e-12 Score=121.57 Aligned_cols=114 Identities=20% Similarity=0.162 Sum_probs=68.5
Q ss_pred eeEEEEeCCCCCCChHH------HHHHHHhccEEEEEEeCCCCCchhHHH-H----HHHHHHcCCcEEEEEeccCCCCCC
Q 010392 152 TKINIIDTPGHSDFGGE------VERILNMVEGVLLVVDSVEGPMPQTRF-V----LKKALEFGHAVVVVVNKIDRPSAR 220 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~------~~~~~~~~d~~llvida~~g~~~~~~~-~----l~~~~~~~~p~ivviNK~Dl~~~~ 220 (512)
+.+.||||||+.++... +..++.. +.+++++|+.......... . +......++|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 57999999998765322 1223444 7889999976543332221 1 122334578999999999986432
Q ss_pred chhhHhhhHHHHH-------Hhc----------------CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 221 PDYVINSTFELFI-------ELN----------------ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 221 ~~~~~~~~~~~~~-------~~~----------------~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
. .+++.+.+. .+. ........+++++||++|. |+++|++.|.+.
T Consensus 188 ~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~----------gi~~l~~~i~~~ 254 (262)
T 1yrb_A 188 E---KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE----------GFEDLETLAYEH 254 (262)
T ss_dssp H---HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT----------THHHHHHHHHHH
T ss_pred c---HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc----------cHHHHHHHHHHH
Confidence 1 111111110 100 0000112478999999999 999999999876
Q ss_pred CC
Q 010392 278 IP 279 (512)
Q Consensus 278 lp 279 (512)
++
T Consensus 255 ~~ 256 (262)
T 1yrb_A 255 YC 256 (262)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.23 E-value=3.2e-11 Score=122.14 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=86.0
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
+....+|+|+|.+|+|||||+|+|++........+ ++|++.....+.+.+.++.|+||||..+-
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~p----------------ftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYE----------------FTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTC----------------SSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCC----------------CceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 44567899999999999999999997654333222 56888888899999999999999998642
Q ss_pred -------hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc-----CCcEEEEEeccCCC
Q 010392 166 -------GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-----GHAVVVVVNKIDRP 217 (512)
Q Consensus 166 -------~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~-----~~p~ivviNK~Dl~ 217 (512)
...+...++.||++++|+|+++... ........+... ..|.++++||+|..
T Consensus 133 a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 133 AKDGRGRGKQVIAVARTCNLLFIILDVNKPLH-HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp -----CHHHHHHHHHHHCSEEEEEEETTSHHH-HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred chhhhHHHHHHHHHHHhcCccccccccCccHH-HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 2445667889999999999987432 222222333333 46889999999974
No 201
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.23 E-value=1.5e-11 Score=122.79 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=91.5
Q ss_pred cceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCC-----------CCchhHHHHHHHHHH--
Q 010392 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE-----------GPMPQTRFVLKKALE-- 202 (512)
Q Consensus 136 ~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~-----------g~~~~~~~~l~~~~~-- 202 (512)
+..|+......+.+++.++.+|||+|++.|...|..+++.++++|+|+|.++ ........+|..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 4456666677788889999999999999999999999999999999999761 223344556665554
Q ss_pred --cCCcEEEEEeccCCCCCC------------------chhhHhhhHHHH------HHhcCCcc----------ccccce
Q 010392 203 --FGHAVVVVVNKIDRPSAR------------------PDYVINSTFELF------IELNATDE----------QCDFQA 246 (512)
Q Consensus 203 --~~~p~ivviNK~Dl~~~~------------------~~~~~~~~~~~~------~~~~~~~~----------~~~~pv 246 (512)
.++|+++|+||+|+.... .++..+-+.+.| ..+..... ...+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 268999999999985311 112222233333 22111111 024678
Q ss_pred eeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 247 i~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.++||+.+. +++.+|+.+.+.+
T Consensus 305 h~TsA~dt~----------nv~~vF~~v~~~I 326 (340)
T 4fid_A 305 NPTNATDGS----------NIKRVFMLAVDVI 326 (340)
T ss_dssp EEECTTCHH----------HHHHHHHHHHHHH
T ss_pred EEEEeeCcH----------HHHHHHHHHHHHH
Confidence 899999998 7788877776654
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.19 E-value=3.1e-11 Score=113.94 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=93.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeee---ccchhhhh--cceeEEee-eeE------------EE
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIM---DSNDLERE--RGITILSK-NTS------------IT 148 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~---d~~~~e~~--~g~ti~~~-~~~------------~~ 148 (512)
...++|+++|++|+|||||+++|+...+...+...+...+. |....+.. ..+.+... ... +.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 45789999999999999999999987654323233221111 10001100 00111100 000 00
Q ss_pred ECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhh
Q 010392 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINST 228 (512)
Q Consensus 149 ~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~ 228 (512)
..+..+.++|++|....... +-...+..+.++|+..+...... .....+.|.++|+||+|+.... ....+++
T Consensus 116 ~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~ 187 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAV-GADIKKM 187 (226)
T ss_dssp GGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHH-TCCHHHH
T ss_pred cCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchh-HHHHHHH
Confidence 11237899999995321100 11234567788886433211111 1112468999999999986421 0123334
Q ss_pred HHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+.+..+.. ..+++++||++|. |+.++++.+.+.+
T Consensus 188 ~~~~~~~~~-----~~~~~~~Sa~~g~----------gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 188 ENDAKRINP-----DAEVVLLSLKTME----------GFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHCT-----TSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHHhCC-----CCeEEEEEecCCC----------CHHHHHHHHHHHH
Confidence 444433321 3479999999999 9999999987654
No 203
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.17 E-value=3.2e-11 Score=119.94 Aligned_cols=132 Identities=14% Similarity=0.221 Sum_probs=93.3
Q ss_pred cceeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCC-------C----CCchhHHHHHHHHHH--
Q 010392 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSV-------E----GPMPQTRFVLKKALE-- 202 (512)
Q Consensus 136 ~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~-------~----g~~~~~~~~l~~~~~-- 202 (512)
+..|+......+..++.++.+|||+|++.+...|..+++.++++|+|+|.+ + ........++..+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 445666667778889999999999999999999999999999999999754 1 122344555655544
Q ss_pred --cCCcEEEEEeccCCCCC-------------------CchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCC
Q 010392 203 --FGHAVVVVVNKIDRPSA-------------------RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD 261 (512)
Q Consensus 203 --~~~p~ivviNK~Dl~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~ 261 (512)
.++|+++|+||+|+... +.++..+-+.+.|.++.. .....+.++++||+.+.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~-~~~~~i~~~~TsA~d~~------ 303 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNP-DSDKIIYSHFTCATDTE------ 303 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCT-TTTSCEEEEECCTTCHH------
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcc-cccCCcEEEEEEeecCH------
Confidence 26899999999998532 112222333344443332 22235667899999999
Q ss_pred CcCCCchhhHHHHHHhC
Q 010392 262 NLADDLGPLFESIMRCI 278 (512)
Q Consensus 262 ~~~~gi~~Ll~~i~~~l 278 (512)
+++.+++.+.+.+
T Consensus 304 ----nV~~vF~~v~~~I 316 (327)
T 3ohm_A 304 ----NIRFVFAAVKDTI 316 (327)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 8888888887654
No 204
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=99.12 E-value=1.5e-10 Score=107.72 Aligned_cols=84 Identities=18% Similarity=0.355 Sum_probs=71.5
Q ss_pred ccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--cc
Q 010392 285 KDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CG 362 (512)
Q Consensus 285 ~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~ 362 (512)
.++||++.|.+++. +.|+++.|||.+|+|++||.|.+.|.+... +|++|+ .++.++++|.|||+|++ .|
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~---~V~~I~----~~~~~~~~A~aGd~V~l~L~g 73 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNV---EVLGIL----SDDVETDTVAPGENLKIRLKG 73 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEE---EEEEEC----SSSSCBSEECTTSEEEEEEEE
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEE---EEEEEE----ECCEEeEEECCCCEEEEEEcC
Confidence 46899999999987 689999999999999999999999998665 999994 55678999999999999 66
Q ss_pred CC--ccccCCeEecCCC
Q 010392 363 ID--DIQIGETIADKVS 377 (512)
Q Consensus 363 l~--~~~~Gdtl~~~~~ 377 (512)
++ ++++||+|+++++
T Consensus 74 i~~~di~rG~vl~~~~~ 90 (204)
T 3e1y_E 74 IEEEEILPGFILCDPNN 90 (204)
T ss_dssp SSSSCCCTTCEEBCSSS
T ss_pred CCHHHCccceEEECCCC
Confidence 64 7999999998765
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.08 E-value=1.8e-10 Score=115.78 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=65.4
Q ss_pred ECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc--hhhHh
Q 010392 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP--DYVIN 226 (512)
Q Consensus 149 ~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~--~~~~~ 226 (512)
+.+..+.|+||||..+-.. .....+|.+++|+|+..+...+. ....+ ..++.++++||+|+..... ....+
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~~~~~~s~~~~~ 217 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDGDGERRASAAAS 217 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhccCchhHHHHHHH
Confidence 3578999999999865422 34578999999999765421110 00001 1246788889999753210 11112
Q ss_pred hhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 227 STFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
++...+.-+.........+++++||++|. |+++|++.|.+..+
T Consensus 218 ~l~~a~~l~~~~~~~~~~~vl~~Sal~g~----------gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 218 EYRAALHILTPPSATWTPPVVTISGLHGK----------GLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHTTBCCSBTTBCCCEEEEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCCEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 22221111110000112468999999999 99999998887653
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.04 E-value=1.1e-10 Score=122.83 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=95.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCc-cceee-e----eecc-chhhhhcceeEEeee-------------eE
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN-QTVKE-R----IMDS-NDLERERGITILSKN-------------TS 146 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~-~~~~~-~----~~d~-~~~e~~~g~ti~~~~-------------~~ 146 (512)
...++|+++|++|+||||++++|.......... ..+.. . ..+. .......++.+.... ..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998542211010 00100 0 0000 001112233322210 01
Q ss_pred EEECCeeEEEEeCCCCCCCh----HHHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcE-EEEEeccCCCCC
Q 010392 147 ITYNDTKINIIDTPGHSDFG----GEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDRPSA 219 (512)
Q Consensus 147 ~~~~~~~i~liDtPG~~~~~----~~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~-ivviNK~Dl~~~ 219 (512)
+.+.++.+.||||||..... .++.... ..+|.+++|+|+..+.. .......+.+. +|+ .+|+||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 12367899999999987432 2222222 26799999999988743 23333333332 675 899999998632
Q ss_pred CchhhHhhhHHHHHH----hcCCcc----ccccceeeeccccCccCCCCCCcCCC-chhhHHHHHHh
Q 010392 220 RPDYVINSTFELFIE----LNATDE----QCDFQAIYASGIQGKAGLSPDNLADD-LGPLFESIMRC 277 (512)
Q Consensus 220 ~~~~~~~~~~~~~~~----~~~~~~----~~~~pvi~~Sa~~g~~~~~~~~~~~g-i~~Ll~~i~~~ 277 (512)
....+. +...+.. ++.... ..-.|.+++|++.|. | +..|++.+.+.
T Consensus 256 -~g~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~----------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 -GGGALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGM----------GDIEGLIDKVNEL 310 (504)
T ss_dssp -CTHHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTT----------TTTTTTHHHHTTT
T ss_pred -hHHHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCC----------CcHHHHHHHHHHH
Confidence 222222 2222210 000000 011256778999988 7 89999998866
No 207
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.02 E-value=1.9e-10 Score=116.40 Aligned_cols=131 Identities=12% Similarity=0.185 Sum_probs=83.9
Q ss_pred eeEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCC-----------CchhHHHHHHHHHHc---
Q 010392 138 ITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-----------PMPQTRFVLKKALEF--- 203 (512)
Q Consensus 138 ~ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g-----------~~~~~~~~l~~~~~~--- 203 (512)
.|+......+.+++..+.+|||+|+..+...+..+++.++++|+|+|.++- .......++..+...
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 345555567788899999999999999999999999999999999998862 233445566665542
Q ss_pred -CCcEEEEEeccCCCCCC---------------chhhHhhhHH----HHHHhcCCccccccceeeeccccCccCCCCCCc
Q 010392 204 -GHAVVVVVNKIDRPSAR---------------PDYVINSTFE----LFIELNATDEQCDFQAIYASGIQGKAGLSPDNL 263 (512)
Q Consensus 204 -~~p~ivviNK~Dl~~~~---------------~~~~~~~~~~----~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~ 263 (512)
++|+|+|+||+|+.... .....++..+ .|..+........+.++++||++|.
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~-------- 338 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE-------- 338 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH--------
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch--------
Confidence 68999999999985211 0011223322 3333322111235678899999999
Q ss_pred CCCchhhHHHHHHhC
Q 010392 264 ADDLGPLFESIMRCI 278 (512)
Q Consensus 264 ~~gi~~Ll~~i~~~l 278 (512)
|+..+++.+.+.+
T Consensus 339 --nV~~vF~~v~~~i 351 (362)
T 1zcb_A 339 --NIRLVFRDVKDTI 351 (362)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHH
Confidence 8899988887654
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.89 E-value=1.3e-08 Score=104.48 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=82.8
Q ss_pred hcccCCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC--eeEEEEeCC
Q 010392 83 LMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTP 160 (512)
Q Consensus 83 ~~~~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~i~liDtP 160 (512)
...+...++++|+|++|+|||||++.|++.......... . ..+.+.......+...+ ..++++|++
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~-------~-----~~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATH-------T-----QPGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------C-----CSSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCC-------C-----CccceEeeEEEEeecCccccccchhhhh
Confidence 334556778999999999999999999886321110000 0 01222221111122222 268999999
Q ss_pred CCCCCh--------------HHHHHHHHh---------------cc-EEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEE
Q 010392 161 GHSDFG--------------GEVERILNM---------------VE-GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVV 210 (512)
Q Consensus 161 G~~~~~--------------~~~~~~~~~---------------~d-~~llvida~~g~~~~~~~~l~~~~~~~~p~ivv 210 (512)
|..+.. ..+..++.. +| +++|++|+.++....+.++++.+. .++|+|+|
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~V 182 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPI 182 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEE
Confidence 986531 112222221 12 366677888888888877777775 67899999
Q ss_pred EeccCCCCCCchhhHhhhHHHHHH-hcCCccccccceeeecc
Q 010392 211 VNKIDRPSARPDYVINSTFELFIE-LNATDEQCDFQAIYASG 251 (512)
Q Consensus 211 iNK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pvi~~Sa 251 (512)
+||+|..... .+..+.+.+.. +.. .+++++++|.
T Consensus 183 i~KtD~Lt~~---E~~~l~~~I~~~L~~----~gi~I~~is~ 217 (427)
T 2qag_B 183 IAKADAISKS---ELTKFKIKITSELVS----NGVQIYQFPT 217 (427)
T ss_dssp ESCGGGSCHH---HHHHHHHHHHHHHBT----TBCCCCCCC-
T ss_pred EcchhccchH---HHHHHHHHHHHHHHH----cCCcEEecCC
Confidence 9999987421 23333333332 322 2567888885
No 209
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.83 E-value=2e-09 Score=109.95 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=63.8
Q ss_pred eEEeeeeEEEECCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCC-----------CCchhHHHHHHHHHHc----
Q 010392 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE-----------GPMPQTRFVLKKALEF---- 203 (512)
Q Consensus 139 ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~-----------g~~~~~~~~l~~~~~~---- 203 (512)
|+......+.+++..+.||||+|++.|...+..+++.++++|+|+|.++ ........|+..+...
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4445556677888999999999999999999999999999999999875 2234455666666543
Q ss_pred CCcEEEEEeccCCC
Q 010392 204 GHAVVVVVNKIDRP 217 (512)
Q Consensus 204 ~~p~ivviNK~Dl~ 217 (512)
++|+++|+||+|+.
T Consensus 284 ~~piiLvgNK~DL~ 297 (402)
T 1azs_C 284 TISVILFLNKQDLL 297 (402)
T ss_dssp SCCEEEEEECHHHH
T ss_pred CCeEEEEEEChhhh
Confidence 57999999999985
No 210
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.79 E-value=7.1e-10 Score=112.78 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=70.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh--
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG-- 166 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~-- 166 (512)
.++|+++|.+|+|||||+|+|++..........+ ....|+|...... .+. ..+.++||||..+..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~----------~~~~gtT~~~~~~--~~~-~~~~liDtPG~~~~~~~ 228 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT----------SYFPGTTLDMIEI--PLE-SGATLYDTPGIINHHQM 228 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE----------EECTTSSCEEEEE--ECS-TTCEEEECCSCCCCSSG
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceee----------cCCCCeEEeeEEE--EeC-CCeEEEeCCCcCcHHHH
Confidence 3579999999999999999999862110000000 0112455544332 222 248999999986432
Q ss_pred -----HHHHHHH---HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC
Q 010392 167 -----GEVERIL---NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (512)
Q Consensus 167 -----~~~~~~~---~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~ 218 (512)
.+....+ ...|.+++++|+...........+..+...+.|+++++||+|...
T Consensus 229 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 229 AHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp GGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 1222333 567999999998543221111113333445789999999999864
No 211
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.75 E-value=4.2e-09 Score=106.16 Aligned_cols=119 Identities=16% Similarity=0.207 Sum_probs=78.6
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCC-----------CCCchhHHHHHHHHHH----cCCcEEEEEecc
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSV-----------EGPMPQTRFVLKKALE----FGHAVVVVVNKI 214 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~-----------~g~~~~~~~~l~~~~~----~~~p~ivviNK~ 214 (512)
+...+.||||+|++.|...+..+++.++++|+|+|.+ .........++..+.. .++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999975 1223445556666654 258999999999
Q ss_pred CCCCCCch--------------------hhHhhhHHH----HHHh---cCCc--cccccceeeeccccCccCCCCCCcCC
Q 010392 215 DRPSARPD--------------------YVINSTFEL----FIEL---NATD--EQCDFQAIYASGIQGKAGLSPDNLAD 265 (512)
Q Consensus 215 Dl~~~~~~--------------------~~~~~~~~~----~~~~---~~~~--~~~~~pvi~~Sa~~g~~~~~~~~~~~ 265 (512)
|+...... ...++..+. |..+ .... ....+.++++||+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~---------- 330 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK---------- 330 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH----------
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch----------
Confidence 98532100 012222222 2222 0000 0123457899999999
Q ss_pred CchhhHHHHHHhC
Q 010392 266 DLGPLFESIMRCI 278 (512)
Q Consensus 266 gi~~Ll~~i~~~l 278 (512)
|+..+++.+.+.+
T Consensus 331 nV~~vF~~v~~~I 343 (354)
T 2xtz_A 331 LVKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8899888887654
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.75 E-value=7.4e-08 Score=98.77 Aligned_cols=164 Identities=12% Similarity=0.125 Sum_probs=94.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC-eeEEEEeCCCCCCChH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSDFGG 167 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~i~liDtPG~~~~~~ 167 (512)
...++|+|++|+|||||+|.|++...... +.+. .+..+..+ ++. .+.... ..++++|+||...-..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~--GsI~---~~g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~~~~~ 135 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEE--GAAK---TGVVEVTM-ERH-------PYKHPNIPNVVFWDLPGIGSTNF 135 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTST--TSCC---CCC----C-CCE-------EEECSSCTTEEEEECCCGGGSSC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccC--ceEE---ECCeecce-eEE-------eccccccCCeeehHhhcccchHH
Confidence 44799999999999999999998432211 1110 00000000 011 111111 2689999999743222
Q ss_pred HHHHHHH-----hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC-------CC---chhhHhhhHHHH
Q 010392 168 EVERILN-----MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS-------AR---PDYVINSTFELF 232 (512)
Q Consensus 168 ~~~~~~~-----~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~-------~~---~~~~~~~~~~~~ 232 (512)
....++. ..|..++ ++... .+.+...+...+...+.|+++|+||.|+.- -+ ..++.+.+++..
T Consensus 136 ~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp CHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 2233332 2344444 77654 456667777788888999999999999751 11 122233333322
Q ss_pred H----HhcCCccccccceeeecc--ccCccCCCCCCcCCCchhhHHHHHHhCCCC
Q 010392 233 I----ELNATDEQCDFQAIYASG--IQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (512)
Q Consensus 233 ~----~~~~~~~~~~~pvi~~Sa--~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 281 (512)
. +.+.. ...+|.+|+ ..+. |++.|.+.+.+.+|..
T Consensus 214 ~~~l~~~g~~----~~~iiliSsh~l~~~----------~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 214 VNTFRENGIA----EPPIFLLSNKNVCHY----------DFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHTTCS----SCCEEECCTTCTTST----------THHHHHHHHHHHSCGG
T ss_pred HHHHHhcCCC----CCcEEEEecCcCCcc----------CHHHHHHHHHHhCccc
Confidence 1 11111 124788999 5555 7999999999998754
No 213
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.75 E-value=1e-08 Score=101.41 Aligned_cols=103 Identities=18% Similarity=0.052 Sum_probs=78.1
Q ss_pred eEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCC--chhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHH
Q 010392 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP--MPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFE 230 (512)
Q Consensus 153 ~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~--~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~ 230 (512)
++++||| +++|...+..+++.+|++|+|+|+++.. ......|+..+...++|+++|+||+|+...+ ..+++.+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~---~v~~~~~ 138 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDED---DLRKVRE 138 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH---HHHHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCch---hHHHHHH
Confidence 7899999 8999888888999999999999998753 3445667777777789999999999996532 1233333
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHH
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~ 275 (512)
....+.. . ++++++||++|. |++++++.+.
T Consensus 139 ~~~~~~~----~-~~~~~~SAktg~----------gv~~lf~~l~ 168 (301)
T 1u0l_A 139 LEEIYSG----L-YPIVKTSAKTGM----------GIEELKEYLK 168 (301)
T ss_dssp HHHHHTT----T-SCEEECCTTTCT----------THHHHHHHHS
T ss_pred HHHHHhh----h-CcEEEEECCCCc----------CHHHHHHHhc
Confidence 3332221 1 579999999999 8999987764
No 214
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.75 E-value=9.9e-09 Score=104.35 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=51.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC----------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND---------------- 151 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~---------------- 151 (512)
...+|+++|.+|+|||||+|+|++........+ ++|+......+.+.+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p----------------~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~ 84 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFP----------------FCTIDPNESRVPVPDERFDFLCQYHKPASKI 84 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCC----------------ccccCceeEEEEECCccceeeccccCccccc
Confidence 346799999999999999999997644222111 234444444444332
Q ss_pred -eeEEEEeCCCCCCChH-------HHHHHHHhccEEEEEEeCCC
Q 010392 152 -TKINIIDTPGHSDFGG-------EVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 152 -~~i~liDtPG~~~~~~-------~~~~~~~~~d~~llvida~~ 187 (512)
..+.+|||||+..+.. .+..+++.+|++++|+|+.+
T Consensus 85 ~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3599999999987543 56778899999999999875
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.71 E-value=7.7e-08 Score=93.38 Aligned_cols=123 Identities=21% Similarity=0.271 Sum_probs=71.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh---
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG--- 166 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~--- 166 (512)
.+++++|++|+|||||++.|++.............. +.......+++...... ..-...++++|++|+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~--~i~~~~~~~~i~~v~q~---~~~~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREE--KIPKTVEIKAIGHVIEE---GGVKMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCc--ccCcceeeeeeEEEeec---CCCcCCceEEechhhhhhcccH
Confidence 689999999999999999999865432111000000 00000001111111110 0112368999999975421
Q ss_pred ---HHHHH--------HHH--------------hccEEEEEEe-CCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC
Q 010392 167 ---GEVER--------ILN--------------MVEGVLLVVD-SVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (512)
Q Consensus 167 ---~~~~~--------~~~--------------~~d~~llvid-a~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~ 218 (512)
..+.. .+. .++++++++| ..++......+.++.+.+. +++++|+||+|...
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 11111 111 1477899999 4578888888888888877 99999999999875
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.71 E-value=1.4e-09 Score=110.46 Aligned_cols=116 Identities=11% Similarity=0.122 Sum_probs=67.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCC-cCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCCh--
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVF-RDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG-- 166 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~-~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~-- 166 (512)
.+|+++|.+|+|||||+|+|++..... .....+ ....|+|...... .+. ..+.++||||..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~----------~~~~gtT~~~~~~--~~~-~~~~liDtPG~~~~~~~ 227 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITT----------SHFPGTTLDLIDI--PLD-EESSLYDTPGIINHHQM 227 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEE----------ECCC----CEEEE--ESS-SSCEEEECCCBCCTTSG
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceec----------CCCCCeecceEEE--Eec-CCeEEEeCCCcCcHHHH
Confidence 579999999999999999999874221 111100 1122555444332 222 238999999986532
Q ss_pred -----HHHHHH---HHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCC
Q 010392 167 -----GEVERI---LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (512)
Q Consensus 167 -----~~~~~~---~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~ 218 (512)
.+.... ....+.+++++|+...........+..+...+.|+++++||+|...
T Consensus 228 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 228 AHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp GGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 111111 2456789999998543221111112333445789999999999874
No 217
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.51 E-value=2.9e-07 Score=93.77 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=60.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC-CCcCccceeeeeeccchhhhhcceeEEeeeeEEEECC---------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK-VFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--------------- 151 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~-~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--------------- 151 (512)
...+|+++|++|+|||||+|+|++... .....+ ++|+......+.+.+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p----------------~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~ 82 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP----------------YATIDPEEAKVAVPDERFDWLCEAYKPKSR 82 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS----------------SCCCCTTEEEEEECCHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCC----------------ceeecceeeeeeeCCcchhhhhhhcccccc
Confidence 356799999999999999999998654 222221 234444444444443
Q ss_pred --eeEEEEeCCCCCC-------ChHHHHHHHHhccEEEEEEeCCC
Q 010392 152 --TKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (512)
Q Consensus 152 --~~i~liDtPG~~~-------~~~~~~~~~~~~d~~llvida~~ 187 (512)
..+.+||+||... +...+...++.+|.+++|+|+.+
T Consensus 83 v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 83 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp ECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999653 44567778899999999999875
No 218
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.49 E-value=4.5e-07 Score=83.18 Aligned_cols=112 Identities=8% Similarity=-0.018 Sum_probs=67.4
Q ss_pred eEEEEeCC------CCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHH----HHHH----cCCcEEEEEecc-CCC
Q 010392 153 KINIIDTP------GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLK----KALE----FGHAVVVVVNKI-DRP 217 (512)
Q Consensus 153 ~i~liDtP------G~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~----~~~~----~~~p~ivviNK~-Dl~ 217 (512)
++....+| |+..++..|..|+..+|++|||||+++......++.+. .+.+ .+.|++|+.||. |+.
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 34455555 78889999999999999999999988753222444332 2211 367999999995 776
Q ss_pred CCCchhhHhhhHHHHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 218 SARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.+-. ..++.+.+. ...-...|-+..|||++|+ |+.+-|++|.+.+..
T Consensus 177 ~Ams---~~EI~e~L~---L~~l~R~W~Iq~csA~TGe----------GL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 177 KRMP---CFYLAHELH---LNLLNHPWLVQDTEAETLT----------GFLNGIEWILEEVES 223 (227)
T ss_dssp CBCC---HHHHHHHTT---GGGGCSCEEEEEEETTTCT----------THHHHHHHHTTTTTT
T ss_pred CCCC---HHHHHHHcC---CcCCCCCEEEEEeECCCCc----------CHHHHHHHHHHHHHh
Confidence 5432 233333331 1111246779999999999 999999999987743
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.41 E-value=2.1e-06 Score=88.46 Aligned_cols=126 Identities=19% Similarity=0.145 Sum_probs=69.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccc---------hhhhhcceeEEeeee-------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---------DLERERGITILSKNT------------- 145 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~---------~~e~~~g~ti~~~~~------------- 145 (512)
....|+++|.+|+||||++..|............+ .-.|.. ......|+.+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll--v~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV--VCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE--EECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE--EeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 35779999999999999999998542211111000 000110 011112332221100
Q ss_pred EEEECCeeEEEEeCCCCCCChHHHHH------HHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 146 SITYNDTKINIIDTPGHSDFGGEVER------ILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 146 ~~~~~~~~i~liDtPG~~~~~~~~~~------~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
.....++.+.||||||.......... ....+|.++||+|+..|. ..........+.-.+..+|+||+|..
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSC
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCc
Confidence 01123478999999996543322221 123468999999988752 22333344444334567899999975
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.40 E-value=2.1e-07 Score=96.27 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=68.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccc-ee-----eeeeccch-hhhhcceeEEeee------------eEEE
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT-VK-----ERIMDSND-LERERGITILSKN------------TSIT 148 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~-~~-----~~~~d~~~-~e~~~g~ti~~~~------------~~~~ 148 (512)
...+|+++|.+|+||||+++.|............ +. ....+... .....|+.+.... ..-.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999864211000000 00 00000000 0000111111100 0000
Q ss_pred ECCeeEEEEeCCCCCCChHHHHHHH------HhccEEEEEEeCCCCCchhHHHHHHHHHHcCC-c-EEEEEeccCCC
Q 010392 149 YNDTKINIIDTPGHSDFGGEVERIL------NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-A-VVVVVNKIDRP 217 (512)
Q Consensus 149 ~~~~~i~liDtPG~~~~~~~~~~~~------~~~d~~llvida~~g~~~~~~~~l~~~~~~~~-p-~ivviNK~Dl~ 217 (512)
+.++.+.||||||...........+ ..+|.+++|+|+..+. .......... ..+ | ..+|+||+|..
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSC
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCc
Confidence 2567899999999876543333222 1478999999988763 2222222222 236 6 88999999975
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.34 E-value=2.2e-06 Score=88.24 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=69.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch---------hhhhcceeEEeee-------------e
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKN-------------T 145 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~ti~~~~-------------~ 145 (512)
....|+++|++|+||||++..|............+ .-.|... .....|+.+.... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll--v~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL--VAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE--EEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--EecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 35678999999999999999997542211110000 0001000 0011122221110 0
Q ss_pred EEEECCeeEEEEeCCCCCC------ChHHHHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 146 SITYNDTKINIIDTPGHSD------FGGEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 146 ~~~~~~~~i~liDtPG~~~------~~~~~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
.+.+.+..+.|+||||... +..++..... ..|.+++|+|+..+. ..........+.-.+..+|+||+|..
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCCcEEEEeccccc
Confidence 1112367899999999644 2333333322 248999999998752 23334444444335678999999975
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.29 E-value=4.6e-07 Score=89.42 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHhccEEEEEEeCCCCC--chhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCc
Q 010392 162 HSDFGGEVERILNMVEGVLLVVDSVEGP--MPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (512)
Q Consensus 162 ~~~~~~~~~~~~~~~d~~llvida~~g~--~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 239 (512)
++.+......++..+|.+++|+|+.+.. ......|+..+...++|+++|+||+|+.+.+.....++..+.+...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~---- 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA---- 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC----
Confidence 4555544455788999999999998653 2334567777777899999999999997532001133344444333
Q ss_pred cccccceeeeccccCccCCCCCCcCCCchhhHHHH
Q 010392 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESI 274 (512)
Q Consensus 240 ~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i 274 (512)
.++++++||++|. |+++|++.+
T Consensus 142 ---g~~~~~~SA~~g~----------gi~~L~~~l 163 (302)
T 2yv5_A 142 ---GYDVLKVSAKTGE----------GIDELVDYL 163 (302)
T ss_dssp ---TCEEEECCTTTCT----------THHHHHHHT
T ss_pred ---CCeEEEEECCCCC----------CHHHHHhhc
Confidence 3468999999999 888887664
No 223
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.23 E-value=4.3e-06 Score=80.49 Aligned_cols=105 Identities=8% Similarity=-0.004 Sum_probs=71.8
Q ss_pred CCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHH----HHH---HH-cCCcEEEEEec-cCCCCCCchhhHhhhHH
Q 010392 160 PGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVL----KKA---LE-FGHAVVVVVNK-IDRPSARPDYVINSTFE 230 (512)
Q Consensus 160 PG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l----~~~---~~-~~~p~ivviNK-~Dl~~~~~~~~~~~~~~ 230 (512)
.|+..++..|..|+..+|++|+|||+++......++.+ ..+ .. .+.|++|+.|| .|+.++-. ..++.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams---~~EI~e 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYLAH 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC---HHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC---HHHHHH
Confidence 47889999999999999999999998774322233322 222 11 47899999997 58875532 233333
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCCC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 280 (512)
.+. ...-...+-|..+||++|+ |+.+-+++|.+.+..
T Consensus 272 ~L~---L~~l~r~W~Iq~csA~tGe----------GL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELH---LNLLNHPWLVQDTEAETLT----------GFLNGIEWILEEVES 308 (312)
T ss_dssp HTT---GGGGCSCEEEEEEETTTCT----------THHHHHHHHHHHSCC
T ss_pred HcC---CccCCCcEEEEecccCCCc----------CHHHHHHHHHHHHHh
Confidence 331 1111246779999999999 999999999988754
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.21 E-value=2.9e-06 Score=82.74 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=68.0
Q ss_pred EEeCCCCC-CChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHH
Q 010392 156 IIDTPGHS-DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE 234 (512)
Q Consensus 156 liDtPG~~-~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~ 234 (512)
|-+.|||. ....++...+..+|++++|+|+..+.......+-+.+ .++|.++|+||+|+.+. ...+...+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~---~~~~~~~~~~~~ 77 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA---AVTQQWKEHFEN 77 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH---HHHHHHHHHHHT
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH---HHHHHHHHHHHh
Confidence 34569997 4567888899999999999999886554432222222 47899999999999752 223333333322
Q ss_pred hcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhCC
Q 010392 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (512)
Q Consensus 235 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 279 (512)
. +++++++||.+|. |+.+|++.+.+.++
T Consensus 78 ~-------g~~~i~iSA~~~~----------gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 78 Q-------GIRSLSINSVNGQ----------GLNQIVPASKEILQ 105 (282)
T ss_dssp T-------TCCEEECCTTTCT----------TGGGHHHHHHHHHH
T ss_pred c-------CCcEEEEECCCcc----------cHHHHHHHHHHHHH
Confidence 1 3468999999998 89999888776653
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.21 E-value=1.3e-06 Score=93.29 Aligned_cols=105 Identities=19% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEE---EECCeeEEEEeCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI---TYNDTKINIIDTPGHS 163 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~---~~~~~~i~liDtPG~~ 163 (512)
.+...|+|+|.+|+|||||+|+|++........+++ ++.|........ ...+..+.|+||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt-------------~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTV-------------QSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSS-------------SCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCC-------------CCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 456789999999999999999999865322211111 011111111111 1246789999999987
Q ss_pred CChH------HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcC
Q 010392 164 DFGG------EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG 204 (512)
Q Consensus 164 ~~~~------~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~ 204 (512)
+... ....++...-..++|+|+..++..+....+..+.+.+
T Consensus 103 ~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~ 149 (592)
T 1f5n_A 103 DVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELT 149 (592)
T ss_dssp CGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHH
T ss_pred cccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHh
Confidence 5332 1111122222237888888888888877766665543
No 226
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.12 E-value=1.3e-05 Score=65.72 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=57.5
Q ss_pred ccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC
Q 010392 287 GALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID 364 (512)
Q Consensus 287 ~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~ 364 (512)
.|-.+.|..++.--+ |.+..|||.+|+|++|+.| |.+. ...+|++| ..+.+++++|.|||.|++ .|..
T Consensus 33 ~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~--~vg~VkSI----E~~~e~v~eA~~GdnVai~Ikg~~ 102 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS--GIGGIVRI----ERNREKVEFAIAGDRIGISIEGKI 102 (116)
T ss_dssp CSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS--CEEEEEEE----EETTEEESEEETTCEEEEEEESCC
T ss_pred CcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc--eEEEEEEE----EECCcCcCCcCCCCEEEEEEECCc
Confidence 344555554333333 8899999999999999999 5541 12488888 456788999999999999 3443
Q ss_pred -ccccCCeEec
Q 010392 365 -DIQIGETIAD 374 (512)
Q Consensus 365 -~~~~Gdtl~~ 374 (512)
+++.||+|..
T Consensus 103 ~~I~~GdVLyv 113 (116)
T 1xe1_A 103 GKVKKGDVLEI 113 (116)
T ss_dssp CCCCTTCEEEE
T ss_pred cccCCCcEEEE
Confidence 7889999863
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.07 E-value=5.5e-06 Score=84.00 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=67.9
Q ss_pred eEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCc--hhhHhhhHH
Q 010392 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP--DYVINSTFE 230 (512)
Q Consensus 153 ~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~--~~~~~~~~~ 230 (512)
++.-++++ +++|...+..+...++++++|+|+.+.......++.+.+ .++|+++|+||+|+..... +...+.+.+
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 34444554 788999888888999999999999875432222222222 2689999999999975421 222222333
Q ss_pred HHHHhcCCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 231 ~~~~~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.+...+.. ..+++++||++|+ |+.+|++.+.+..
T Consensus 127 ~~~~~g~~----~~~v~~iSA~~g~----------gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELGLC----PVDVCLVSAAKGI----------GMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTTCC----CSEEEECBTTTTB----------THHHHHHHHHHHH
T ss_pred HHHHcCCC----cccEEEEECCCCC----------CHHHHHHHHHhhc
Confidence 33333321 1258999999999 9999999987654
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.06 E-value=4.1e-06 Score=81.71 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=37.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~ 164 (512)
....+|+++|.+|+|||||+|+|++........ ..|+|...... .. +..+.+|||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~---------------~~g~T~~~~~~--~~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD---------------RPGITTSQQWV--KV-GKELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------------------CCE--EE-TTTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC---------------CCCeeeeeEEE--Ee-CCCEEEEECcCcCC
Confidence 345789999999999999999999764322211 11445444322 22 44799999999864
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.04 E-value=7.8e-06 Score=80.28 Aligned_cols=122 Identities=18% Similarity=0.187 Sum_probs=70.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch-----------hhhhcceeEEeee-------------
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND-----------LERERGITILSKN------------- 144 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~-----------~e~~~g~ti~~~~------------- 144 (512)
...|+++|..|+||||++..|........ ..+. +.|.+. .....|+.+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~--l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l 173 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVG--LVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV 173 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEE--EEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEE--EEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHH
Confidence 55789999999999999999975432111 1110 111110 0111233322110
Q ss_pred eEEEECCeeEEEEeCCCCCC--ChHHHH------HHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccC
Q 010392 145 TSITYNDTKINIIDTPGHSD--FGGEVE------RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKID 215 (512)
Q Consensus 145 ~~~~~~~~~i~liDtPG~~~--~~~~~~------~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~D 215 (512)
..+.+.++.+.||||||... ...... .....+|.+++|+|+..+ .......+...+ .++ ..+|+||+|
T Consensus 174 ~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 174 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMD 250 (297)
T ss_dssp HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGG
T ss_pred HHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 00112567899999999877 432222 234568999999998754 233333343333 466 778999999
Q ss_pred CC
Q 010392 216 RP 217 (512)
Q Consensus 216 l~ 217 (512)
..
T Consensus 251 ~~ 252 (297)
T 1j8m_F 251 GT 252 (297)
T ss_dssp GC
T ss_pred CC
Confidence 64
No 230
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.00 E-value=8.2e-06 Score=84.31 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=69.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcCCC-cCccceeeeeeccch-----------hhhhcceeEEeee----------
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVF-RDNQTVKERIMDSND-----------LERERGITILSKN---------- 144 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~-~~~~~~~~~~~d~~~-----------~e~~~g~ti~~~~---------- 144 (512)
...+.|+++|..|+||||++..|....... ..... +.|.++ .....++.+....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVl----lvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~ 173 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVL----VVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVN 173 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEE----EEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE----EEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHH
Confidence 346789999999999999999998543211 11000 001000 0112233322210
Q ss_pred ---eEEEECCeeEEEEeCCCCCCChHHHHHH------HHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEecc
Q 010392 145 ---TSITYNDTKINIIDTPGHSDFGGEVERI------LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKI 214 (512)
Q Consensus 145 ---~~~~~~~~~i~liDtPG~~~~~~~~~~~------~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~ 214 (512)
..+.+.++.+.||||||...+....... +...|.+++|+|+..+. ........... +++ .-+|+||+
T Consensus 174 ~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVlnK~ 250 (433)
T 2xxa_A 174 AALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVLTKV 250 (433)
T ss_dssp HHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEEECT
T ss_pred HHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEEecC
Confidence 0112356789999999987654433332 23568899999988652 22222222222 345 35789999
Q ss_pred CCC
Q 010392 215 DRP 217 (512)
Q Consensus 215 Dl~ 217 (512)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 974
No 231
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.95 E-value=2.1e-05 Score=62.70 Aligned_cols=80 Identities=21% Similarity=0.202 Sum_probs=69.7
Q ss_pred eeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCCcccc
Q 010392 291 MLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGIDDIQI 368 (512)
Q Consensus 291 ~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~~~~~ 368 (512)
+-|-++|..+..|.++-++|.+|.++.+..+++.+.+......++.+| -+...+++++.+|.=|+| .+.+|++.
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SL----kr~KddV~EV~~G~ECGi~l~~~~dik~ 84 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSL----KRYKDDVREVAQGYECGLTIKNFNDIKE 84 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEE----ECSSSCCSCCBTTCEEEEECTTCSSCSS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhh----cccccccceECCCcEEEEEEcCcCCCCC
Confidence 456677777888999999999999999999999999988777788888 456678999999999999 46789999
Q ss_pred CCeEec
Q 010392 369 GETIAD 374 (512)
Q Consensus 369 Gdtl~~ 374 (512)
||+|-.
T Consensus 85 GD~Ie~ 90 (99)
T 1d1n_A 85 GDVIEA 90 (99)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999954
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.90 E-value=6.1e-05 Score=74.86 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccc---hh------hhhcceeEEeeeeEE-----------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---DL------ERERGITILSKNTSI----------- 147 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~---~~------e~~~g~ti~~~~~~~----------- 147 (512)
....|+++|+.|+|||||++.|.+..... .+.+.-.-.|.. .. .+..|+.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 45679999999999999999998753221 111110000110 00 112232221110000
Q ss_pred --EECCeeEEEEeCCCCCCCh----HHHHHHH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCC
Q 010392 148 --TYNDTKINIIDTPGHSDFG----GEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDR 216 (512)
Q Consensus 148 --~~~~~~i~liDtPG~~~~~----~~~~~~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl 216 (512)
...+..+.++||+|..... .++.... -..|-.++++|+..+ .+....+....+.--...+++||+|.
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 0124567899999975433 2222211 235889999997765 23333344333322334778999996
No 233
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.89 E-value=1.1e-05 Score=81.62 Aligned_cols=100 Identities=19% Similarity=0.049 Sum_probs=66.3
Q ss_pred CCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHH--cCCcEEEEEeccCCCCCCc--hhhHhhhHHHHHHhc
Q 010392 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE--FGHAVVVVVNKIDRPSARP--DYVINSTFELFIELN 236 (512)
Q Consensus 161 G~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~--~~~p~ivviNK~Dl~~~~~--~~~~~~~~~~~~~~~ 236 (512)
..++|...+..+.+.+|++++|+|+.+.. ..|...+.+ .++|+++|+||+|+..... +...+.+...+...+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence 34678888888888899999999998732 222222333 2689999999999975331 122222223333333
Q ss_pred CCccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHhC
Q 010392 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (512)
Q Consensus 237 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~l 278 (512)
.. ..+++++||++|. |+++|++.+.+..
T Consensus 131 ~~----~~~v~~iSA~~g~----------gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 131 LK----PEDVFLISAAKGQ----------GIAELADAIEYYR 158 (368)
T ss_dssp CC----CSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CC----cccEEEEeCCCCc----------CHHHHHhhhhhhc
Confidence 21 1258999999999 9999999987654
No 234
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.85 E-value=6.3e-06 Score=79.45 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=36.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~ 165 (512)
.+++++|.+|+|||||+|+|++........ ..|+|..... +.. +..+.+|||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~---------------~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA---------------QPGITKGIQW--FSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------------------CCSCE--EEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC---------------CCCCccceEE--EEe-CCCEEEEECCCcccC
Confidence 689999999999999999999764422111 1144443321 222 347899999998764
No 235
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.79 E-value=6.2e-05 Score=81.32 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=39.4
Q ss_pred eeEEEEeCCCCCCC---------hHHHHHHH----Hhc-cEEEEEEeCCCCCch-hHHHHHHHHHHcCCcEEEEEeccCC
Q 010392 152 TKINIIDTPGHSDF---------GGEVERIL----NMV-EGVLLVVDSVEGPMP-QTRFVLKKALEFGHAVVVVVNKIDR 216 (512)
Q Consensus 152 ~~i~liDtPG~~~~---------~~~~~~~~----~~~-d~~llvida~~g~~~-~~~~~l~~~~~~~~p~ivviNK~Dl 216 (512)
-.+.++|.||.... ...+...+ ..- ..+++++++...... ....++..+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 46999999985431 12222222 222 456666665544332 2234445555557899999999999
Q ss_pred CCC
Q 010392 217 PSA 219 (512)
Q Consensus 217 ~~~ 219 (512)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 854
No 236
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.78 E-value=1.3e-05 Score=77.31 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=60.7
Q ss_pred CCCCCC-hHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCC
Q 010392 160 PGHSDF-GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (512)
Q Consensus 160 PG~~~~-~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
|||... ...+...+..+|.+++|+|+..+........ ..+ ++|.++|+||+|+.+. ...+...+.+.+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~~---~~~~~~~~~~~~~--- 74 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIADE---KTTKKWVEFFKKQ--- 74 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSCH---HHHHHHHHHHHHT---
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCCH---HHHHHHHHHHHHc---
Confidence 888753 4578888999999999999987544432111 111 8999999999999752 2233333444332
Q ss_pred ccccccceeeeccccCccCCCCCCcCCCchhhHHHHHHh
Q 010392 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (512)
Q Consensus 239 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~gi~~Ll~~i~~~ 277 (512)
++++ ++||.+|. |+..|++.+...
T Consensus 75 ----g~~v-~iSa~~~~----------gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 ----GKRV-ITTHKGEP----------RKVLLKKLSFDR 98 (262)
T ss_dssp ----TCCE-EECCTTSC----------HHHHHHHHCCCT
T ss_pred ----CCeE-EEECCCCc----------CHHHHHHHHHHh
Confidence 2467 99999998 888888776443
No 237
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.76 E-value=8.2e-05 Score=61.37 Aligned_cols=81 Identities=11% Similarity=0.165 Sum_probs=69.7
Q ss_pred eeeeEEEeeeCCCcE---EEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccCC
Q 010392 290 QMLATNLEYDEHKGR---IAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID 364 (512)
Q Consensus 290 ~~~V~~~~~~~~~G~---v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l~ 364 (512)
.+-|-++|..+..|+ ++-++|.+|.|+.+..+++.+.+......++.+| -+...+|+++.+|.=|+| .+.+
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SL----krfKdDVkEV~~G~ECGi~l~~fn 87 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSL----KHHKDDISVIKTGMDCGLSLDEEK 87 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEE----ESSSSCCSEECTTCEEEEECSCTT
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhh----cccccccceecCCCEEEEEEccCC
Confidence 455777777777787 9999999999999999999999987777788888 456678999999999999 5688
Q ss_pred -ccccCCeEec
Q 010392 365 -DIQIGETIAD 374 (512)
Q Consensus 365 -~~~~Gdtl~~ 374 (512)
|++.||+|-.
T Consensus 88 iDik~GDiIE~ 98 (120)
T 2crv_A 88 VEFKPGDQVIC 98 (120)
T ss_dssp SCCCTTEEEEE
T ss_pred CCCCCCCEEEE
Confidence 9999999954
No 238
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.76 E-value=0.00014 Score=66.69 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=52.0
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcC-----CcEEEEEeccCCC
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG-----HAVVVVVNKIDRP 217 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~-----~p~ivviNK~Dl~ 217 (512)
.+.+.|+|||+.. .......+..+|.+++++...... ......++.+.+.+ .++.+|+|+.|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 4689999999876 456677888999999999988777 77778888877653 5789999999954
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.52 E-value=0.00021 Score=74.31 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch---------hhhhcceeEEeeeeEE------------
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKNTSI------------ 147 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~ti~~~~~~~------------ 147 (512)
...|+|+|..|||||||++.|.+..... .+.+.-.-.|... ....+++.+.......
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 4468999999999999999998653211 1111100011111 0012233222111000
Q ss_pred -EECCeeEEEEeCCCCCCChHH----HHHH---HH-----hccEEEEEEeCCCCCchhHHHHHHHHHH-cCCcEEEEEec
Q 010392 148 -TYNDTKINIIDTPGHSDFGGE----VERI---LN-----MVEGVLLVVDSVEGPMPQTRFVLKKALE-FGHAVVVVVNK 213 (512)
Q Consensus 148 -~~~~~~i~liDtPG~~~~~~~----~~~~---~~-----~~d~~llvida~~g~~~~~~~~l~~~~~-~~~p~ivviNK 213 (512)
...+..+.|+||+|....... +... .+ ..+-++||+|+..|- .....++...+ .++ ..+++||
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~i-tgvIlTK 447 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGL-TGITLTK 447 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCC-SEEEEEC
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCC-CEEEEEc
Confidence 013567899999998543322 1112 11 134689999988762 22223333332 233 4568999
Q ss_pred cCC
Q 010392 214 IDR 216 (512)
Q Consensus 214 ~Dl 216 (512)
+|-
T Consensus 448 LD~ 450 (503)
T 2yhs_A 448 LDG 450 (503)
T ss_dssp GGG
T ss_pred CCC
Confidence 995
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.43 E-value=0.00019 Score=71.08 Aligned_cols=123 Identities=19% Similarity=0.237 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchh---------hh---hcceeEE-eeee---------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL---------ER---ERGITIL-SKNT--------- 145 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~---------e~---~~g~ti~-~~~~--------- 145 (512)
....|+++|..|+||||++..|....... ...+.-.-.|.... .. ..++.+- ....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~ 181 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVF 181 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHH
Confidence 35578999999999999999987643211 11111000111000 00 1233322 1000
Q ss_pred -EE---EECCeeEEEEeCCCCCCChHHHHHH-------H-----HhccEEEEEEeCCCCCchhHHHHHHHHHHcC--Cc-
Q 010392 146 -SI---TYNDTKINIIDTPGHSDFGGEVERI-------L-----NMVEGVLLVVDSVEGPMPQTRFVLKKALEFG--HA- 206 (512)
Q Consensus 146 -~~---~~~~~~i~liDtPG~~~~~~~~~~~-------~-----~~~d~~llvida~~g~~~~~~~~l~~~~~~~--~p- 206 (512)
.+ ...++.+.||||||........... + ..+|.+++|+|+..+ + ..+..++.+. .+
T Consensus 182 ~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-~----~~l~~~~~~~~~~~i 256 (320)
T 1zu4_A 182 DAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-Q----NGVIQAEEFSKVADV 256 (320)
T ss_dssp HHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-H----HHHHHHHHHTTTSCC
T ss_pred HHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-H----HHHHHHHHHhhcCCC
Confidence 00 0135789999999976543222211 1 126889999998854 2 2222233332 33
Q ss_pred EEEEEeccCCC
Q 010392 207 VVVVVNKIDRP 217 (512)
Q Consensus 207 ~ivviNK~Dl~ 217 (512)
.-+|+||+|..
T Consensus 257 ~GvVltk~d~~ 267 (320)
T 1zu4_A 257 SGIILTKMDST 267 (320)
T ss_dssp CEEEEECGGGC
T ss_pred cEEEEeCCCCC
Confidence 35789999964
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.34 E-value=0.00052 Score=70.44 Aligned_cols=125 Identities=20% Similarity=0.205 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch---------hhhhcceeEEeeee-------------
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKNT------------- 145 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~ti~~~~~------------- 145 (512)
....|+++|..|+||||++..|......... .+.-.-.|... .....++.+.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~--~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR--RPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC--CEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 3457899999999999999999865322111 11100001100 01112332222100
Q ss_pred EEEECCeeEEEEeCCCCCCChHHHH----HH--HHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCC
Q 010392 146 SITYNDTKINIIDTPGHSDFGGEVE----RI--LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRP 217 (512)
Q Consensus 146 ~~~~~~~~i~liDtPG~~~~~~~~~----~~--~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~ 217 (512)
.....++.+.||||||......... .. ....|.+++|+|+..+ ............ .++ .-+|+||+|..
T Consensus 175 ~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred HHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 0012467899999999764422111 11 2247889999998754 222222222222 233 56789999964
No 242
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.30 E-value=0.00069 Score=66.53 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=63.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccch---hh------hhcceeEEeeeeE----------E--
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---LE------RERGITILSKNTS----------I-- 147 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~ti~~~~~~----------~-- 147 (512)
...|+++|++|||||||++.|.+..... .+.+.-.-.|... .+ +.+++.+-..... +
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998653221 1111100001000 00 1122222111000 0
Q ss_pred -EECCeeEEEEeCCCCCCChHHHHH-------HH-----HhccEEEEEEeCCCCCchhHHHHHHHHH-HcCCcEEEEEec
Q 010392 148 -TYNDTKINIIDTPGHSDFGGEVER-------IL-----NMVEGVLLVVDSVEGPMPQTRFVLKKAL-EFGHAVVVVVNK 213 (512)
Q Consensus 148 -~~~~~~i~liDtPG~~~~~~~~~~-------~~-----~~~d~~llvida~~g~~~~~~~~l~~~~-~~~~p~ivviNK 213 (512)
...+..+.++||+|.......... ++ ...+.+++++|+..+.. ....+..+. ..++ .++++||
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivTh 256 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVTK 256 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEEC
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEEC
Confidence 012346789999997543322111 11 12466889999877532 333333333 3344 5678999
Q ss_pred cCCC
Q 010392 214 IDRP 217 (512)
Q Consensus 214 ~Dl~ 217 (512)
.|..
T Consensus 257 ~d~~ 260 (304)
T 1rj9_A 257 LDGT 260 (304)
T ss_dssp TTSS
T ss_pred Cccc
Confidence 9964
No 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.30 E-value=0.00053 Score=67.36 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
....|+++|++|+||||++..|...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3456899999999999999999865
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.23 E-value=0.0003 Score=69.11 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHhccEEEEEEeCCCCCchh--HHHHHHHHHHcCCcEEEEEeccCCCCCCch-hhHhhhHHHHHHhcCCccccccceee
Q 010392 172 ILNMVEGVLLVVDSVEGPMPQ--TRFVLKKALEFGHAVVVVVNKIDRPSARPD-YVINSTFELFIELNATDEQCDFQAIY 248 (512)
Q Consensus 172 ~~~~~d~~llvida~~g~~~~--~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pvi~ 248 (512)
.+..+|.+++|+|+..+.... ...++..+...++|.++|+||+|+.+.... +.++++.+.+...+ +++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g-------~~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-------YDVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-------CCEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-------CeEEE
Confidence 467789999999998654433 334444555678999999999999764210 23455556655444 35899
Q ss_pred eccccCccCCCCCCcCCCchhhHH
Q 010392 249 ASGIQGKAGLSPDNLADDLGPLFE 272 (512)
Q Consensus 249 ~Sa~~g~~~~~~~~~~~gi~~Ll~ 272 (512)
+||.+|. |+++|++
T Consensus 156 ~sa~~~~----------g~~~L~~ 169 (307)
T 1t9h_A 156 TSSKDQD----------SLADIIP 169 (307)
T ss_dssp CCHHHHT----------TCTTTGG
T ss_pred EecCCCC----------CHHHHHh
Confidence 9999998 7666654
No 245
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.22 E-value=0.00044 Score=67.69 Aligned_cols=126 Identities=12% Similarity=0.110 Sum_probs=63.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCC-CcCccceeeeeeccc---hh------hhhcceeEEeee-------eEEEEC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKV-FRDNQTVKERIMDSN---DL------ERERGITILSKN-------TSITYN 150 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~-~~~~~~~~~~~~d~~---~~------e~~~g~ti~~~~-------~~~~~~ 150 (512)
....|+++|+.|+||||++..|...... ... .+.-.-.|.. .. ....|+.+.... ......
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~--~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK--KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhc
Confidence 3567999999999999999999754321 110 1100000100 00 000111110000 000124
Q ss_pred CeeEEEEeCCCCCCChHHHH----HHHH--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 151 DTKINIIDTPGHSDFGGEVE----RILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~----~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
+..+.|+||||......... ..+. ..|.+++|+|+..+. .....+.......+ ..-+++||+|..
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~-~~giVltk~D~~ 252 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVP-VNQYIFTKIDET 252 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSC-CCEEEEECTTTC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCC-CCEEEEeCCCcc
Confidence 56899999999875443221 2222 256789999988652 12222222222112 234667999965
No 246
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.21 E-value=0.001 Score=68.64 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.+..-|+|+|..++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45677999999999999999999975
No 247
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.16 E-value=0.00053 Score=63.39 Aligned_cols=120 Identities=10% Similarity=0.117 Sum_probs=73.4
Q ss_pred EEEE-eCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhc------cee--EEee-eeEEEECCeeEEEEeCCC
Q 010392 92 IAII-AHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERER------GIT--ILSK-NTSITYNDTKINIIDTPG 161 (512)
Q Consensus 92 V~vv-G~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~------g~t--i~~~-~~~~~~~~~~i~liDtPG 161 (512)
|+|+ +..|+||||+.-.|........ .-.+.|.++...-. ... +-.. ...--...+.+.|+|||+
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-----~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~ 77 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-----ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQA 77 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-----CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEEC
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-----CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCC
Confidence 5565 5789999999999875432211 11233332221000 000 0000 000002356899999998
Q ss_pred C-CCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc-CCcEEEEEeccCCCC
Q 010392 162 H-SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-GHAVVVVVNKIDRPS 218 (512)
Q Consensus 162 ~-~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~-~~p~ivviNK~Dl~~ 218 (512)
. ... .....+..+|.+|+++.............++.+... +.++.+|+|+.|...
T Consensus 78 ~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 78 RPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp CCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred CcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 7 443 455678899999999998776566667777777774 678899999999643
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.94 E-value=0.0015 Score=63.91 Aligned_cols=125 Identities=19% Similarity=0.175 Sum_probs=63.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccc---------hhhhhcceeEEeee-------------e
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---------DLERERGITILSKN-------------T 145 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~---------~~e~~~g~ti~~~~-------------~ 145 (512)
....++++|..|+||||++..|........ ..+.-.-.|.. ......++.+.... .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999976532111 11100000000 00011122222100 0
Q ss_pred EEEECCeeEEEEeCCCCCCChHHHHH----HH--HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCC
Q 010392 146 SITYNDTKINIIDTPGHSDFGGEVER----IL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRP 217 (512)
Q Consensus 146 ~~~~~~~~i~liDtPG~~~~~~~~~~----~~--~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~ 217 (512)
.....++.+.|+||||.......... .. ..+|.+++|+|+..+ .......+.... ..+ .-+|+||+|..
T Consensus 175 ~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp HHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred HHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 00013568999999987543221111 11 247889999997753 222222222222 233 45789999964
No 249
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.92 E-value=0.0017 Score=67.99 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=79.2
Q ss_pred chhhHHHHHHhCC---CCCCcccccceeeeEEEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeec
Q 010392 267 LGPLFESIMRCIP---GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343 (512)
Q Consensus 267 i~~Ll~~i~~~lp---~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g 343 (512)
|..|++.+..++. .|.....---.+-|..+|..+..|.++-++|..|+++.|..+.+.+.+......+|.+| .
T Consensus 384 iy~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl----~ 459 (501)
T 1zo1_I 384 IYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESL----R 459 (501)
T ss_dssp CSHHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCE----E
T ss_pred HHHHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehh----c
Confidence 3467776655442 33322222334556677777778999999999999999999999988876656678888 4
Q ss_pred CceeecceecCCCEEEE--ccCCccccCCeEecC
Q 010392 344 FSRVSAEIVAAGDICAV--CGIDDIQIGETIADK 375 (512)
Q Consensus 344 ~~~~~v~~a~aGdiv~i--~~l~~~~~Gdtl~~~ 375 (512)
++..+++++..|.-|+| .+.++++.||+|-.-
T Consensus 460 ~~k~~v~e~~~g~ecgi~~~~~~~~~~gd~~~~~ 493 (501)
T 1zo1_I 460 RFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVF 493 (501)
T ss_dssp ETTEEESEEETTCCEEEEBCCCTTCCTTCEEEEC
T ss_pred ccCccccEECCCCEEEEEEcCcCCCCCCCEEEEE
Confidence 56678999999999999 467799999999653
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.74 E-value=0.003 Score=63.20 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=51.9
Q ss_pred HHhccEEEEEEeCCCCCc--hhHHHHHHHHHHcCCcEEEEEeccCCCCCCchhhHhhhHHHHHHhcCCccccccceeeec
Q 010392 173 LNMVEGVLLVVDSVEGPM--PQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYAS 250 (512)
Q Consensus 173 ~~~~d~~llvida~~g~~--~~~~~~l~~~~~~~~p~ivviNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~~S 250 (512)
+..+|.+++|.. ..... .....++..+...++|.++|+||+|+.+.......++....|..+ .++++++|
T Consensus 128 ~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~-------G~~v~~~S 199 (358)
T 2rcn_A 128 AANIDQIVIVSA-ILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI-------GYRVLMVS 199 (358)
T ss_dssp EECCCEEEEEEE-STTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT-------TCCEEECB
T ss_pred HhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhC-------CCcEEEEe
Confidence 466788887644 43322 123344555566799999999999997532111133333444333 34689999
Q ss_pred cccCccCCCCCCcCCCchhhHHH
Q 010392 251 GIQGKAGLSPDNLADDLGPLFES 273 (512)
Q Consensus 251 a~~g~~~~~~~~~~~gi~~Ll~~ 273 (512)
|.+|. |+..|...
T Consensus 200 a~~~~----------gl~~L~~~ 212 (358)
T 2rcn_A 200 SHTQD----------GLKPLEEA 212 (358)
T ss_dssp TTTTB----------THHHHHHH
T ss_pred cCCCc----------CHHHHHHh
Confidence 99998 87777654
No 251
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.58 E-value=0.0059 Score=59.74 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchh---------hhhcceeEEeeeeE-E-----------
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL---------ERERGITILSKNTS-I----------- 147 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~---------e~~~g~ti~~~~~~-~----------- 147 (512)
...++++|+.|||||||+..|.+..... .+.+.-.-.|.... ....++.+...... .
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 3468999999999999999998753211 11111000111110 01123333221111 0
Q ss_pred --EECCeeEEEEeCCCCCCChHHHHHHH-------H-----hccEEEEEEeCCCCCchhHHHHHHHHH-HcCCcEEEEEe
Q 010392 148 --TYNDTKINIIDTPGHSDFGGEVERIL-------N-----MVEGVLLVVDSVEGPMPQTRFVLKKAL-EFGHAVVVVVN 212 (512)
Q Consensus 148 --~~~~~~i~liDtPG~~~~~~~~~~~~-------~-----~~d~~llvida~~g~~~~~~~~l~~~~-~~~~p~ivviN 212 (512)
...+....++||.|...........+ . ..+-+++|+|++.+..... .+..+. ..++. +++++
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g~t-~iiiT 254 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVGIT-GLILT 254 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTCCC-EEEEE
T ss_pred HHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcCCC-EEEEe
Confidence 01234567999999866543222211 1 1355699999776643332 223333 33444 56789
Q ss_pred ccCCC
Q 010392 213 KIDRP 217 (512)
Q Consensus 213 K~Dl~ 217 (512)
|+|..
T Consensus 255 hlD~~ 259 (302)
T 3b9q_A 255 KLDGS 259 (302)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 99854
No 252
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.57 E-value=0.0044 Score=58.21 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=48.7
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCC-cEEEEEeccC
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-AVVVVVNKID 215 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~-p~ivviNK~D 215 (512)
..+.+.|||||+.... .....+..+|.+++++++............+.+...+. .+.+|+|+.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 4678999999986543 44567788999999999876555555666666777776 4789999998
No 253
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.47 E-value=0.01 Score=62.60 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=76.3
Q ss_pred chhhHHHHHHhC---CCCCCcccccceeeeEEEeeeCC---CcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEe
Q 010392 267 LGPLFESIMRCI---PGPRIEKDGALQMLATNLEYDEH---KGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFV 340 (512)
Q Consensus 267 i~~Ll~~i~~~l---p~p~~~~~~p~~~~V~~~~~~~~---~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~ 340 (512)
|..|++.+...+ -.|.....-.-.+-|.++|..+. .|.++-++|..|+|+.|..+.+.+.+......+|.+|
T Consensus 423 iy~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~sl-- 500 (537)
T 3izy_P 423 IYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISL-- 500 (537)
T ss_dssp SCCSHHHHHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCC--
T ss_pred HHHHHHHHHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehh--
Confidence 344555444432 22332223334556677776653 6799999999999999999999998877666788888
Q ss_pred eecCceeecceecCCCEEEE--cc-CCccccCCeEe
Q 010392 341 YEKFSRVSAEIVAAGDICAV--CG-IDDIQIGETIA 373 (512)
Q Consensus 341 ~~g~~~~~v~~a~aGdiv~i--~~-l~~~~~Gdtl~ 373 (512)
.+...+|+++..|.-|+| .+ .++++.||+|-
T Consensus 501 --k~~k~~v~ev~~g~ecgi~~~~~~~~~~~gd~ie 534 (537)
T 3izy_P 501 --KHHKDDTSVVKTGMDCGLSLDEEKIEFKVGDAII 534 (537)
T ss_dssp --CCSSCCCSEEETTCEEEEESSSSCSSCSCCCEEE
T ss_pred --cccCcccceEcCCCEEEEEEcCcccCCCCCCEEE
Confidence 567789999999999999 46 77999999984
No 254
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.47 E-value=0.015 Score=56.76 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=50.7
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEE-EEEeccCCC
Q 010392 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRP 217 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~i-vviNK~Dl~ 217 (512)
+.+.|||||+...... .......+|.+|+|+.............++.+...+.+++ +|+|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 4799999999765432 2334577999999999888777888888888888887754 789999964
No 255
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.46 E-value=0.0042 Score=60.75 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=45.0
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHc----CCcEE-EEEeccCC
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF----GHAVV-VVVNKIDR 216 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~----~~p~i-vviNK~Dl 216 (512)
.+.+.|||||+..... .+...+..+|.+|+|++............++.+... +++++ +|+|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4689999999865432 123356889999999987664445555666666653 45554 89999983
No 256
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.43 E-value=0.00058 Score=71.39 Aligned_cols=106 Identities=12% Similarity=0.161 Sum_probs=61.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhh-cceeEEeeeeEEEECCeeEEEEeCCCCCC--C
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERE-RGITILSKNTSITYNDTKINIIDTPGHSD--F 165 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~-~g~ti~~~~~~~~~~~~~i~liDtPG~~~--~ 165 (512)
..+|+++|.+|+||||+..+|....+... ..+ ...+......+ .| ......+||..|... +
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t---~~~~~d~~r~~~~g------------~~~~~~ifd~~g~~~~r~ 102 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG-VPT---REFNVGQYRRDMVK------------TYKSFEFFLPDNEEGLKI 102 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCE---EEEEHHHHHHHHHC------------SCCCGGGGCTTCHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC-CCc---eEEecchhhhhhcc------------CCCcccccCCCCHHHHHH
Confidence 46799999999999999999986533111 000 01010000000 00 012235788888632 2
Q ss_pred hHHH--------HHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEE
Q 010392 166 GGEV--------ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVV 210 (512)
Q Consensus 166 ~~~~--------~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivv 210 (512)
...+ ..++...++.++|+|++......-..++..+++.+.+++++
T Consensus 103 re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 103 RKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 2222 34455578889999998875555556667777777665544
No 257
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.26 E-value=0.014 Score=58.41 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...|+++|+.|||||||+..|.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4468999999999999999998753
No 258
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.15 E-value=0.0018 Score=63.57 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..++++|++|+|||||+|.|++..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 468999999999999999997653
No 259
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.89 E-value=0.01 Score=58.06 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..++++|++|+|||||+|.|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 458999999999999999998 53
No 260
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.59 E-value=0.0067 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
+++++|++|+|||||++.|++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988653
No 261
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.55 E-value=0.033 Score=52.98 Aligned_cols=67 Identities=18% Similarity=0.035 Sum_probs=50.3
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEE-EEEeccCC
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDR 216 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~i-vviNK~Dl 216 (512)
..+.+.|||||+...........+..+|.+|+|+.............++.+++.+.+++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56789999999875533222223346899999998887666677777888888888877 89999984
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.38 E-value=0.0075 Score=55.02 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..++|+|++|+|||||++.|++..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999998753
No 263
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.32 E-value=0.011 Score=52.98 Aligned_cols=24 Identities=4% Similarity=0.371 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..++|+|++|||||||++.|....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999998754
No 264
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.30 E-value=0.069 Score=54.77 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=58.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc----CC-----CcCccceeeeeeccchhhhhcceeEEeeeeEEEE---CCee
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQA----KV-----FRDNQTVKERIMDSNDLERERGITILSKNTSITY---NDTK 153 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~----~~-----~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---~~~~ 153 (512)
..++.-|+|+|..++|||+|+|.|+... +. ......... +. .......+|+-+-.....+.. .+..
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~-~~-~~~~~~TkGIWmw~~p~~~~~~~g~~~~ 141 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WR-GGSERETTGIQIWSEIFLINKPDGKKVA 141 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSC-CC-CSSSCCCCSEEEESSCEEEECTTSCEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCce-eC-CCCCCcCceEEEecCcccccCCCCCeeE
Confidence 3457778999999999999999776421 00 000000000 00 011122345555443333333 2356
Q ss_pred EEEEeCCCCCCChH-----HHHHHHH--hccEEEEEEeCCCCCchhHHHHHHHHHH
Q 010392 154 INIIDTPGHSDFGG-----EVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALE 202 (512)
Q Consensus 154 i~liDtPG~~~~~~-----~~~~~~~--~~d~~llvida~~g~~~~~~~~l~~~~~ 202 (512)
+.++||.|..+... ...-++. .++..| +.....+..+..+.+....+
T Consensus 142 vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~I--yN~~~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 142 VLLMDTQGTFDSQSTLRDSATVFALSTMISSIQV--YNLSQNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEE--EEEESSCCHHHHHHHHHHHH
T ss_pred EEEEeccCCCCcccCccccHHHHHHHHHHhhhee--ecccccCCHHHHHHHHHHHH
Confidence 89999999875432 1222222 345544 44444555566665554443
No 265
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.10 E-value=0.013 Score=57.33 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..++++|++|+|||||++.|.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3589999999999999999987543
No 266
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.06 E-value=0.015 Score=53.12 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.-+-|+|+|++|+|||||+++|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445689999999999999999997643
No 267
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.00 E-value=0.012 Score=54.00 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..++|+|++|||||||++.|.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348999999999999999998864
No 268
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.93 E-value=0.012 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-++|+|++|||||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999764
No 269
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.93 E-value=0.017 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-..|+++|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 456999999999999999999875
No 270
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.92 E-value=0.013 Score=53.21 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..|+|+|++|||||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999998863
No 271
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.80 E-value=0.018 Score=52.65 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
...|+|+|+.|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999875
No 272
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.77 E-value=0.015 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..++|+|++|||||||++.|++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348999999999999999998865
No 273
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.73 E-value=0.25 Score=43.93 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
....|+++|.+|+||||++..|....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999997653
No 274
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.72 E-value=0.018 Score=52.73 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.-..|+|+|++|||||||++.|.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998753
No 275
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.70 E-value=0.095 Score=49.51 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHH------cCCcEE-EEEeccCCCCCCch
Q 010392 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE------FGHAVV-VVVNKIDRPSARPD 222 (512)
Q Consensus 150 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~------~~~p~i-vviNK~Dl~~~~~~ 222 (512)
..+.+.|||||+.... .....+..+|.+|+++.+...........++.+.. .+.+++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 4578999999987543 34567788999999999876444444444444432 246664 89999986432223
Q ss_pred hhHhhhHHHH
Q 010392 223 YVINSTFELF 232 (512)
Q Consensus 223 ~~~~~~~~~~ 232 (512)
+..+.+.+.+
T Consensus 188 ~~~~~l~~~~ 197 (257)
T 1wcv_1 188 QVEAQLRAHF 197 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3444444443
No 276
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.67 E-value=0.016 Score=53.77 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.-++|+|++|||||||++.|++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4589999999999999999998653
No 277
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.66 E-value=0.017 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
--.++++|+.|+|||||++.|.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999999875
No 278
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.59 E-value=0.024 Score=50.06 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...|+++|.+||||||+++.|....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999997653
No 279
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.52 E-value=0.094 Score=53.57 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=52.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcCCCcCccceeeeeeccchhhhhcceeEEeeeeEEEECCeeEEEEeCCCCCCChH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 167 (512)
...-|+++|.+||||||+...|....+.. ++|.... ..+.....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~---------~i~~D~~---------------------------~~~~~~~~ 300 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV---------HVNRDTL---------------------------GSWQRCVS 300 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCE---------ECCGGGS---------------------------CSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcE---------EEccchH---------------------------HHHHHHHH
Confidence 34568999999999999999997653211 1111110 00111112
Q ss_pred HHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccC
Q 010392 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKID 215 (512)
Q Consensus 168 ~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~D 215 (512)
.....+. .+..+|+|+......+...++..++..+.++.+|.-.++
T Consensus 301 ~~~~~l~--~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~ 346 (416)
T 3zvl_A 301 SCQAALR--QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 346 (416)
T ss_dssp HHHHHHH--TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHh--cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 2222222 334466998876656666677777778887766654444
No 280
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.40 E-value=0.024 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
....|+|+|.+|||||||++.|.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34569999999999999999998764
No 281
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.33 E-value=0.11 Score=49.84 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=50.9
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcEE-EEEeccCCC
Q 010392 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRP 217 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~i-vviNK~Dl~ 217 (512)
+.+.|||||+..... ........+|.+|+|+.+...........++.+...+.+++ +|+|+.|..
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 479999999876542 23344567999999999888777778888888888888876 899999964
No 282
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.30 E-value=0.017 Score=54.28 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.++|+|+.|||||||++.|.+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999764
No 283
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.29 E-value=0.021 Score=50.63 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=18.0
Q ss_pred EEEEEeCCCCcHHHHHHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAML 110 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll 110 (512)
-++++|++|||||||++.++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999854
No 284
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.24 E-value=0.019 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|||||||++.|.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 285
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.21 E-value=0.017 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
..|+|+|.+|||||||++.|++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 286
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.15 E-value=0.03 Score=50.74 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998764
No 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.15 E-value=0.026 Score=49.63 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..|+|+|.+|||||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999987644
No 288
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.14 E-value=0.032 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..-|+|+|++|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458999999999999999998764
No 289
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.13 E-value=0.028 Score=49.25 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..|+|+|.+||||||+.+.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999986643
No 290
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.08 E-value=0.024 Score=53.42 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++++|+.|||||||++.|.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998753
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.07 E-value=0.031 Score=49.84 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.+.++++|.+|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 456899999999999999999875
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.02 E-value=0.029 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
|+|+|++|+|||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998764
No 293
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=93.99 E-value=0.16 Score=54.30 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=58.8
Q ss_pred EEeeeCCCcEEEEEEEeecccCCCCEEEEccCCCceeeeeeeeeEeeecCceeecceecCCCEEEE--ccC---CccccC
Q 010392 295 NLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI---DDIQIG 369 (512)
Q Consensus 295 ~~~~~~~~G~v~~grV~sG~l~~g~~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~~l---~~~~~G 369 (512)
.+|..+. |.++-++|..|+|+.|..|.+ +.+. ...+|.+| ..+..+++++.+|.-|+| .+. ++++.|
T Consensus 472 ~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl----~~~k~~v~~~~~g~e~gi~~~~~~~~~~~~~~ 543 (594)
T 1g7s_A 472 LVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESM----QDKGENLKSASRGQKVAMAIKDAVYGKTIHEG 543 (594)
T ss_dssp EEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEE----EETTEEESEEETTCCEEEEEETCCBTTTBCTT
T ss_pred eEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehh----cccCccccccCCCCEEEEEEeCcccCCCCCCC
Confidence 4555555 899999999999999999998 5554 45688888 456678999999999999 344 689999
Q ss_pred CeEecC
Q 010392 370 ETIADK 375 (512)
Q Consensus 370 dtl~~~ 375 (512)
|+|-.-
T Consensus 544 d~~~~~ 549 (594)
T 1g7s_A 544 DTLYVD 549 (594)
T ss_dssp CEEEEC
T ss_pred CEEEEE
Confidence 999753
No 294
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.97 E-value=0.025 Score=56.47 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..++++|++|+|||||+|.|++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3689999999999999999997543
No 295
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.97 E-value=0.21 Score=47.02 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
....|+++|.+||||||+...|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456799999999999999999987643
No 296
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.90 E-value=0.026 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++++|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999876
No 297
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.86 E-value=0.032 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
--.++|+|++|||||||++.|++.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 346999999999999999999875
No 298
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.81 E-value=0.026 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.++|+|+.|||||||++.|++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 299
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.80 E-value=0.025 Score=52.31 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|+|||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999765
No 300
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.79 E-value=0.18 Score=43.00 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
...+|.+.|++|+|||+++.++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999999764
No 301
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.79 E-value=0.032 Score=54.47 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.4
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-..-..++|+|++|+|||||++.|++..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3344569999999999999999998764
No 302
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.78 E-value=0.025 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.++|+|+.|||||||++.|.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999764
No 303
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.77 E-value=0.025 Score=54.48 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|||||||++.|.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.77 E-value=0.032 Score=49.95 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 010392 91 NIAIIAHVDHGKTTLVDAMLK 111 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~ 111 (512)
.++++|++|||||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999976
No 305
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.77 E-value=0.059 Score=49.73 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
....+++.|++|+|||||+.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999997653
No 306
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.75 E-value=0.12 Score=48.90 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=49.6
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCC
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRP 217 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~ 217 (512)
.+.+.|||||+... ......+..+|.+|+|+.............++.+...+.+ +-+|+|+.|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 46899999998654 5566778899999999987765555666677777776754 56899999854
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.73 E-value=0.04 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
++.++++|.+|+|||||+.+|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999865
No 308
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.73 E-value=0.03 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 309
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.73 E-value=0.031 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++++|+.|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48999999999999999998754
No 310
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.72 E-value=0.025 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|||||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999765
No 311
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.71 E-value=0.028 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|+|||||++.|.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999765
No 312
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.71 E-value=0.028 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++|+|+.|+|||||++.|.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998753
No 313
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.70 E-value=0.025 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++|+|+.|||||||++.|.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999998653
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.69 E-value=0.047 Score=49.53 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
....|+|+|.+|||||||++.|....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999997654
No 315
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.65 E-value=0.028 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|||||||++.|.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999765
No 316
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.65 E-value=0.041 Score=49.90 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLK 111 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~ 111 (512)
.+|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999987
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.64 E-value=0.036 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.+.|+|+|++|||||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999998764
No 318
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.60 E-value=0.17 Score=46.78 Aligned_cols=66 Identities=21% Similarity=0.144 Sum_probs=50.4
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCC
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPS 218 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~ 218 (512)
.+.+.|+|||+... ......+..+|.+++|++............++.+.+.+.+ +-+|+|+.|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 35799999998654 4566788899999999987765555666777777777764 568999999643
No 319
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.60 E-value=0.027 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|+|||||++.|.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999765
No 320
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.57 E-value=0.033 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 321
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.53 E-value=0.038 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..|+|+|.+||||||+.+.| ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 35899999999999999999 443
No 322
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.52 E-value=0.029 Score=53.60 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.++|+|+.|||||||++.|.+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 35899999999999999999764
No 323
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.47 E-value=0.032 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.++|+|+.|+|||||++.|.+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 35899999999999999999865
No 324
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.46 E-value=0.03 Score=53.25 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|||||||++.|.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999765
No 325
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.45 E-value=0.047 Score=49.45 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
...+|+++|.+||||||+...|....+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345799999999999999999987543
No 326
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.44 E-value=0.043 Score=49.73 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
...|+|+|.+|||||||++.|....+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999987643
No 327
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.43 E-value=0.27 Score=47.46 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=22.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.....+|++.|++|+|||+|+.++....
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3456689999999999999999876543
No 328
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.41 E-value=0.034 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++++|+.|+|||||++.|.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999997653
No 329
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.34 E-value=0.046 Score=51.38 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...|+|+|++|||||||++.|....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998543
No 330
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.32 E-value=0.053 Score=48.33 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..|+|.|.+||||||+++.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999997653
No 331
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.32 E-value=0.14 Score=49.40 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=46.1
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHH------cCCcE-EEEEeccCCC
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE------FGHAV-VVVVNKIDRP 217 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~------~~~p~-ivviNK~Dl~ 217 (512)
.+.+.|||||+.... .....+..+|.+|+++.+...........++.+.. .++++ -+|+|+.|..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 367999999987543 34556778999999999776555555555555544 25664 4899999964
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.31 E-value=0.055 Score=53.04 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.....|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34557999999999999999999875
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.31 E-value=0.057 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
...+|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999876
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.29 E-value=0.047 Score=50.33 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..|+|+|++||||||+++.|....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997653
No 335
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.27 E-value=0.035 Score=53.25 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.++|+|+.|+|||||++.|.+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999765
No 336
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.26 E-value=0.036 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++|+|+.|+|||||++.|.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999765
No 337
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.25 E-value=0.053 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLK 111 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~ 111 (512)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999987
No 338
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.21 E-value=0.034 Score=53.19 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.++|+|+.|+|||||++.|.+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35899999999999999999764
No 339
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.21 E-value=0.046 Score=50.32 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
--++|+|++|+|||||+..|++..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998753
No 340
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.19 E-value=0.035 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.++++|+.|+|||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999765
No 341
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.14 E-value=0.03 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=15.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHH-Hh
Q 010392 90 RNIAIIAHVDHGKTTLVDAML-KQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll-~~ 112 (512)
..|+|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999998 65
No 342
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.10 E-value=0.26 Score=47.62 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...+++.|++|+|||+|+.++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3479999999999999999998754
No 343
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.08 E-value=0.043 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...++++|++|+|||||+.++.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998753
No 344
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.98 E-value=0.23 Score=46.92 Aligned_cols=64 Identities=9% Similarity=0.121 Sum_probs=48.7
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcC--CcEEEEEeccCC
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG--HAVVVVVNKIDR 216 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~--~p~ivviNK~Dl 216 (512)
.+.+.|||||+... ......+..+|.+|+++.............++.+...+ .++.+|+|+.+.
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 46799999998653 34667788899999999987655555666677777664 578899999953
No 345
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.96 E-value=0.072 Score=48.17 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.....|+|+|.+||||||+...|....+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999986543
No 346
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.95 E-value=0.049 Score=50.88 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLK 111 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~ 111 (512)
-.++|+|++|+|||||+..|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3489999999999999999884
No 347
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.90 E-value=0.35 Score=47.42 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...+|++.|++|+|||+|+.++....
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45579999999999999999997653
No 348
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.89 E-value=0.054 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
++..++|+|..|||||||++.|++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35678999999999999999999763
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.89 E-value=0.072 Score=48.44 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.....|+|+|.+|+|||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999875
No 350
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.88 E-value=0.061 Score=48.48 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.|+|+|.+||||||+++.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999987543
No 351
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.87 E-value=0.062 Score=47.78 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.++|+++|.+||||||+...|....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976543
No 352
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.87 E-value=0.066 Score=50.28 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
....|+|+|+.|||||||++.|.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34569999999999999999998754
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.87 E-value=0.057 Score=49.06 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLK 111 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~ 111 (512)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 354
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.86 E-value=0.075 Score=47.86 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
+...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4567999999999999999999875
No 355
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.82 E-value=0.48 Score=49.69 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.+.+++.|++|+|||||+.++....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998764
No 356
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.82 E-value=0.051 Score=54.29 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++++|++|||||||++.|.+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999998754
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.82 E-value=0.072 Score=52.37 Aligned_cols=27 Identities=22% Similarity=0.100 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
....-|+|+|++|||||||++.|....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999987653
No 358
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.81 E-value=0.034 Score=54.34 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
--.++|+|++|||||||++.|++.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 346999999999999999999764
No 359
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.80 E-value=0.056 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.|+|+|++|||||||+++|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999875
No 360
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.80 E-value=0.047 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++|+|+.|+|||||++.|.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 361
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.77 E-value=0.07 Score=47.05 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..|+++|.+||||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999999999987643
No 362
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.75 E-value=0.055 Score=54.21 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..+++|+|++|+|||||++.|.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988643
No 363
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.75 E-value=0.048 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.+++|+|++|+|||||++.|++...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4699999999999999999987543
No 364
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.73 E-value=0.082 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
....|+|+|.+|+|||||++.|...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999763
No 365
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.71 E-value=0.079 Score=47.30 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...|+++|.+||||||+.+.|....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999997654
No 366
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.69 E-value=0.074 Score=49.22 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
...|+|+|.+||||||+.+.|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999986543
No 367
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.68 E-value=0.051 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.++|+|+.|+|||||++.|.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 45899999999999999999764
No 368
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.63 E-value=0.11 Score=48.13 Aligned_cols=43 Identities=16% Similarity=0.021 Sum_probs=28.9
Q ss_pred cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCCCC
Q 010392 177 EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA 219 (512)
Q Consensus 177 d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~~~ 219 (512)
+.-+++||-..-+.....+.+..+...++++++++-..|-...
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~~ 131 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGE 131 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTSS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccCC
Confidence 3558888955444344445566666678999999988886543
No 369
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.60 E-value=0.055 Score=54.12 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++|+|++|||||||++.|.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 348999999999999999998753
No 370
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.57 E-value=0.08 Score=51.28 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=22.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.....|+|+|.+|||||||++.|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998764
No 371
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.55 E-value=0.8 Score=45.37 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=34.9
Q ss_pred ccEEEEEEeCCCCCchhHHHHHHHHHHcCCcE-EEEEeccCCC
Q 010392 176 VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDRP 217 (512)
Q Consensus 176 ~d~~llvida~~g~~~~~~~~l~~~~~~~~p~-ivviNK~Dl~ 217 (512)
.+++++|.-...-....++..+..+++.++|+ -+|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 47788888877767778889999999999986 6789999865
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.51 E-value=0.083 Score=48.00 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
...|+|.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 456999999999999999999764
No 373
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.49 E-value=0.071 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
-.+|+|+.|+|||||+++|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999987543
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.49 E-value=0.098 Score=49.11 Aligned_cols=26 Identities=15% Similarity=0.035 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...+|+|+|.+||||||+...|....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998654
No 375
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.49 E-value=0.17 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.+.|.|++|+|||+|+.++...
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4689999999999999999875
No 376
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.46 E-value=0.086 Score=51.49 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.....|+|+|++|||||||++.|.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344579999999999999999998753
No 377
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.46 E-value=0.046 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.+++|+|++|+|||||++.|++...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3699999999999999999987643
No 378
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.45 E-value=0.097 Score=46.57 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...|+|+|.+||||||+...|....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999997653
No 379
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.43 E-value=0.059 Score=53.77 Aligned_cols=23 Identities=17% Similarity=0.318 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++++|++|||||||++.|.+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999998753
No 380
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.42 E-value=0.072 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
+|+|+|.+||||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976543
No 381
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.40 E-value=0.078 Score=48.51 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
+|+|+|.+||||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976543
No 382
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.37 E-value=0.082 Score=46.83 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++|+++|.+|+||||+...|....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998654
No 383
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.37 E-value=0.079 Score=47.15 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
..|+|.|.+||||||+++.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 384
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.37 E-value=0.08 Score=47.04 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..|+++|.+||||||+.+.|....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997643
No 385
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.34 E-value=0.17 Score=47.58 Aligned_cols=64 Identities=8% Similarity=0.123 Sum_probs=48.4
Q ss_pred CeeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcC---------CcEEEEEeccCC
Q 010392 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG---------HAVVVVVNKIDR 216 (512)
Q Consensus 151 ~~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~---------~p~ivviNK~Dl 216 (512)
.+.+.|+|||+... ......+..+|.+|++++............+..+...+ ..+.+|+|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 57899999998543 46677888999999999977655555556666665543 467899999985
No 386
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.31 E-value=0.062 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++++|++|||||||++.|.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 48999999999999999998753
No 387
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.30 E-value=0.063 Score=54.03 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.++++|++|||||||++.|.+-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 489999999999999999987543
No 388
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.30 E-value=0.06 Score=46.57 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-..++++|++|+|||||+..+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998754
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.30 E-value=0.069 Score=53.69 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-..|+|+|++|||||||++.|++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446999999999999999999875
No 390
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.28 E-value=0.16 Score=45.82 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
..+++.|++|+|||+|+..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999765
No 391
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.27 E-value=0.064 Score=53.67 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++++|++|||||||++.|.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 348999999999999999998754
No 392
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.17 E-value=0.098 Score=46.80 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
...|+|+|.+||||||+...|....+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976543
No 393
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.17 E-value=0.074 Score=46.94 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
+|+|+|.+||||||+...|....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999976543
No 394
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.13 E-value=0.099 Score=47.53 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
...|+|.|.+||||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 395
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.11 E-value=0.067 Score=53.75 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++++|++|||||||++.|.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48999999999999999998753
No 396
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.11 E-value=0.1 Score=47.10 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
....|+|+|.+||||||+...|....+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999986543
No 397
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.09 E-value=0.069 Score=53.64 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++++|++|||||||++.|.+-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 348999999999999999998754
No 398
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.03 E-value=0.094 Score=46.74 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..|+|+|.+||||||+...|....+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999976543
No 399
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.99 E-value=0.35 Score=48.00 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
....+.|.|++|+|||||+..+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999865
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.96 E-value=0.063 Score=56.39 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.+++|+|++|||||||+++|++..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998754
No 401
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.94 E-value=0.67 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
--++|.|.+|+|||||+-.+...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 34889999999999999998765
No 402
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.90 E-value=0.11 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...|+|+|++||||||+++.|....
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998543
No 403
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.89 E-value=0.1 Score=47.98 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..+|+|+|.+||||||+...|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999976543
No 404
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.87 E-value=0.059 Score=53.62 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++++|++|||||||++.|.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 48999999999999999998753
No 405
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.78 E-value=0.11 Score=47.03 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..|+|.|.+||||||+++.|.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5699999999999999999987543
No 406
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.76 E-value=0.11 Score=46.72 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...|+|+|.+||||||+++.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999998753
No 407
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.70 E-value=0.055 Score=49.28 Aligned_cols=22 Identities=36% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999765
No 408
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.67 E-value=0.092 Score=53.64 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
--.|+|+|++|||||||+++|++...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34689999999999999999998643
No 409
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.66 E-value=0.084 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.++|+|++|||||||++.|.+.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 34899999999999999999864
No 410
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.66 E-value=0.1 Score=48.03 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
...|+|+|.+||||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999987644
No 411
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.61 E-value=1.3 Score=45.32 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
....+-|++.|++|+|||+|+.++....+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44567899999999999999999987644
No 412
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=91.61 E-value=0.77 Score=41.85 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred CeeEEEEeCCCCCCC--h--HHHHHHHHhc-cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEE-EEEeccCCC
Q 010392 151 DTKINIIDTPGHSDF--G--GEVERILNMV-EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRP 217 (512)
Q Consensus 151 ~~~i~liDtPG~~~~--~--~~~~~~~~~~-d~~llvida~~g~~~~~~~~l~~~~~~~~p~i-vviNK~Dl~ 217 (512)
++.+.||||||.... . .......... +.+|+|+++..+...+....++.++..+.+++ +|+|+.|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 468999999976431 0 1122222323 34888888766555566667777777778754 789999864
No 413
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.61 E-value=0.087 Score=46.59 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=18.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
...|+|.|.+||||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35699999999999999999976543
No 414
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.51 E-value=0.59 Score=45.26 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...|++.|++|+|||+|+.++....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999997653
No 415
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.48 E-value=0.12 Score=45.36 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
....+++.|++|+|||+|+.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999765
No 416
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.45 E-value=0.12 Score=50.00 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
....|+++|++|||||||+..|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998753
No 417
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.38 E-value=0.32 Score=45.14 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=50.0
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCC---cEEEEEeccCCCC
Q 010392 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH---AVVVVVNKIDRPS 218 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~---p~ivviNK~Dl~~ 218 (512)
+.+.|||||+.... .....+..+|.+++++.............++.+...+. .+.+|+|+.|...
T Consensus 119 yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 119 YDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp CSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred CCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 57999999986543 45667889999999999876555666777777777663 4789999998643
No 418
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.30 E-value=0.12 Score=46.23 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..|+|+|.+||||||+...|....+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999987543
No 419
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.26 E-value=0.059 Score=53.78 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++++|++|||||||++.|.+-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 348999999999999999998753
No 420
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.26 E-value=0.12 Score=44.94 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
+|+|.|.+||||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999977533
No 421
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.24 E-value=0.59 Score=44.94 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=51.6
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCCCCCchhHHHHHHHHHHcCCc-EEEEEeccCCCC
Q 010392 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPS 218 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p-~ivviNK~Dl~~ 218 (512)
+.+.|||||...... ........+|.+|+|+.+...........++.+...+.+ +-+|+|++|...
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 469999999876543 233456779999999998887777888888888888876 568899999643
No 422
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.22 E-value=0.13 Score=48.73 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.|+|+|++|||||||...|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 589999999999999999987543
No 423
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.22 E-value=0.12 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.309 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
+.++++|++|+|||||++++.+..
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 449999999999999999998753
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.18 E-value=0.13 Score=47.10 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
+|+|+|.+||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998654
No 425
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.10 E-value=0.13 Score=45.87 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 426
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.09 E-value=0.11 Score=45.38 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
..|+|+|.+||||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999976533
No 427
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.08 E-value=0.13 Score=44.94 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
...+|+|+|.+||||||+...|....+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999976533
No 428
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.01 E-value=0.12 Score=46.21 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999765
No 429
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.01 E-value=0.15 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-..|+++|.+||||||+++.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999764
No 430
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.99 E-value=0.15 Score=48.01 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
....|+|.|.+||||||+.+.|....+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456799999999999999999977533
No 431
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.90 E-value=0.12 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
..++|+|++|+|||||+..|+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999854
No 432
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.89 E-value=0.14 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHH
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLK 111 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~ 111 (512)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.84 E-value=0.16 Score=47.25 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...+|+|+|.+||||||+...|....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999997653
No 434
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.80 E-value=0.12 Score=45.98 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.|+|+|.+||||||+...|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999976543
No 435
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.77 E-value=0.14 Score=44.18 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-.+|+|+.|+|||||++++...
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999999998754
No 436
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.74 E-value=0.15 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
...|+++|.+||||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 437
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.73 E-value=0.1 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.-..|+|.|..|||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456999999999999999999775
No 438
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.71 E-value=0.13 Score=48.37 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.+.++++|++|+|||||++++.+..
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999998764
No 439
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.61 E-value=0.19 Score=46.45 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
+.+-|.|+|++||||+|....|....+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 345688999999999999999987654
No 440
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.61 E-value=0.13 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-..++|+|+.|||||||++.|++.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 345999999999999999999875
No 441
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.53 E-value=0.16 Score=48.74 Aligned_cols=24 Identities=8% Similarity=0.253 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHH
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLK 111 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~ 111 (512)
....|+|+|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999973
No 442
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.48 E-value=0.62 Score=41.54 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=26.9
Q ss_pred cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEeccCCC
Q 010392 177 EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (512)
Q Consensus 177 d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~Dl~ 217 (512)
+.-+++||-..-+.....+++..+...++++++.+...|-.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f~ 116 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHK 116 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCTT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccccc
Confidence 46688999544443344455555555689999988877743
No 443
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.35 E-value=0.16 Score=48.81 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=27.7
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhccEEEEEEeCC
Q 010392 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSV 186 (512)
Q Consensus 152 ~~i~liDtPG~~~~~~~~~~~~~~~d~~llvida~ 186 (512)
+.+.|||||+.. .......+..+|.+|+++...
T Consensus 104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 579999999875 456777889999999999865
No 444
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.24 E-value=0.17 Score=46.37 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcCC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAKV 115 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~~ 115 (512)
+|+++|++||||+|....|....+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5899999999999999999876543
No 445
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.22 E-value=0.16 Score=50.41 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.--.++|+|+.|+|||||++.|.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34469999999999999999999874
No 446
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.20 E-value=0.16 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.+|+|+|.+||||||+...|....+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999976543
No 447
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.12 E-value=0.18 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.|+|.|.+||||||+++.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 448
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.09 E-value=0.22 Score=45.40 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
...|+++|.+|+||||++..|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999764
No 449
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.06 E-value=0.15 Score=52.94 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++|+|+.|||||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999998753
No 450
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.03 E-value=0.15 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.+|+|+|.+|+||||+.+.|....+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999976443
No 451
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.03 E-value=0.21 Score=45.10 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.....|+++|..||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999765
No 452
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.02 E-value=1.6 Score=42.54 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=24.1
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.....++.|.|++|+|||++++.++...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998764
No 453
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.01 E-value=0.16 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
--++|+|++|+|||||+..|.+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 348999999999999999998753
No 454
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.93 E-value=0.15 Score=44.71 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...++++.|++|+|||+|+..+....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999997653
No 455
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.77 E-value=1.9 Score=43.98 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=24.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
....+-|++.|++|+|||+|+.++....+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567799999999999999999987644
No 456
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.76 E-value=0.17 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.+.|+++|++|+|||||+.++.+..
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3459999999999999999998764
No 457
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.75 E-value=0.17 Score=49.86 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
...++++|++|+|||||++.+.+..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35689999999999999999987643
No 458
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.67 E-value=0.22 Score=46.86 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.+.|++.|++|+|||||+.++....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4569999999999999999998753
No 459
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.64 E-value=0.17 Score=50.64 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
++|+|+.|+|||||+++++..
T Consensus 26 ~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 669999999999999999754
No 460
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.63 E-value=0.18 Score=45.86 Aligned_cols=22 Identities=23% Similarity=0.033 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLK 111 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~ 111 (512)
..++++|++|+|||||+..|+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999987
No 461
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.59 E-value=0.2 Score=46.70 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
...|+|.|++|+||||+.+.|....+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976543
No 462
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.57 E-value=0.21 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..|.+.|++|+|||+|+.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998654
No 463
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.57 E-value=0.17 Score=53.52 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++++|+.|+|||||++.|.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
No 464
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.27 E-value=0.21 Score=51.31 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-..--.++|+|++|+|||||++.|.+..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3344469999999999999999998864
No 465
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.22 E-value=0.28 Score=45.52 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
....|+|.|.+||||||+++.|.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345699999999999999999987644
No 466
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.21 E-value=0.2 Score=46.31 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
..++|+|++|+|||||+..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999875
No 467
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.20 E-value=1.8 Score=42.26 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=34.0
Q ss_pred cEEEEEEeCCCCCchhHHHHHHHHHHcCCcE-EEEEeccCCC
Q 010392 177 EGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDRP 217 (512)
Q Consensus 177 d~~llvida~~g~~~~~~~~l~~~~~~~~p~-ivviNK~Dl~ 217 (512)
+++++|.-...-....++..+..+...++|+ -+|+|++...
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 5888888877766778888999999999986 6789999865
No 468
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.08 E-value=0.17 Score=54.07 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
--.++++|++|+|||||++.|++..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3469999999999999999997653
No 469
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.01 E-value=0.18 Score=53.80 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
--.++++|++|+|||||++.|++..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 470
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.92 E-value=1.2 Score=45.66 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
....+++.|++|+|||||+..+....
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 34689999999999999999998764
No 471
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.73 E-value=3.4 Score=39.90 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=17.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
+.+.|++|+|||+++.++....
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT
T ss_pred EEeeCcCCCCHHHHHHHHHHHh
Confidence 4555669999999999997653
No 472
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.68 E-value=0.17 Score=53.44 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++++|+.|+|||||++.|.+..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999998753
No 473
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.67 E-value=0.2 Score=53.73 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++|+|+.|+|||||++.|.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 358999999999999999998754
No 474
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.66 E-value=0.31 Score=48.45 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
-..+.|.|++|+|||||+..++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999998764
No 475
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.49 E-value=2.3 Score=41.52 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.+.|.|++|+|||||+-.++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999998887654
No 476
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.41 E-value=0.3 Score=45.36 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
....|+|+|.+|+||||+...|....+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999987543
No 477
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.39 E-value=0.38 Score=48.31 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.....++++|++|+|||||+..|.+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999999864
No 478
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=88.15 E-value=3.4 Score=38.76 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=42.5
Q ss_pred CeeEEEEeCCCCC-----CChHHHHHHH-HhccEEEEEEeCCCCCchhHHHHHHHHHHcCCcE-EEEEeccC
Q 010392 151 DTKINIIDTPGHS-----DFGGEVERIL-NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKID 215 (512)
Q Consensus 151 ~~~i~liDtPG~~-----~~~~~~~~~~-~~~d~~llvida~~g~~~~~~~~l~~~~~~~~p~-ivviNK~D 215 (512)
.+.+.+||.+|-. +......... ....-+|+|+|+..+....+...++.+...++++ =+|+||..
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 3579999999742 1101112222 2245689999998877777777777777778775 56789984
No 479
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=88.11 E-value=0.28 Score=48.97 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=21.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHH
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAM 109 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~L 109 (512)
.+..+|+++|.++||||||+..|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45788999999999999999997
No 480
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.95 E-value=0.3 Score=43.99 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
.|+|.|.+||||||+...|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999977543
No 481
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.92 E-value=1.1 Score=46.90 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=26.2
Q ss_pred cEEEEEEeCCCCCchhHHHHHHHHHHcCCcEEEEEecc
Q 010392 177 EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKI 214 (512)
Q Consensus 177 d~~llvida~~g~~~~~~~~l~~~~~~~~p~ivviNK~ 214 (512)
.+-.+|+|++.+.......+...+++.+.+++++--.+
T Consensus 118 ~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~ 155 (520)
T 2axn_A 118 GGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVC 155 (520)
T ss_dssp CCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeC
Confidence 46688999998766666666677777787766554333
No 482
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.88 E-value=0.28 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
..++|+|++|+|||||+..|+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 483
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.88 E-value=0.17 Score=54.15 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
--.++++|++|+|||||++.|++.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999865
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.88 E-value=0.26 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++|+|+.|+|||||++.|.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 485
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.71 E-value=0.19 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
--.++++|++|+|||||++.|++..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3469999999999999999997653
No 486
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.59 E-value=0.33 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
..|+++|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 487
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.58 E-value=0.22 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++|+|+.|+|||||++.|.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 488
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.55 E-value=0.23 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.++|+|+.|+|||||++.|.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 458999999999999999998753
No 489
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.54 E-value=0.37 Score=45.16 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 88 ~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..+.|++.|++|+|||+|+.++....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999997653
No 490
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.51 E-value=0.063 Score=50.01 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcC
Q 010392 92 IAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 92 V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
++|+|+.|||||||++++.+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 47999999999999999987644
No 491
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.47 E-value=3.7 Score=41.66 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
....+-|++.|++|+|||+|+.++....+
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 34567899999999999999999987644
No 492
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=87.34 E-value=0.38 Score=45.80 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 87 ~~~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.....+.+.|++|+|||+|+.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999997753
No 493
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.25 E-value=0.36 Score=43.79 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcC
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~~ 114 (512)
+-|+|+|++|+|||||+..|.....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5589999999999999999987543
No 494
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.20 E-value=0.34 Score=44.06 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
-.+|+|+.|+||||+++++....
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 35799999999999999986543
No 495
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.19 E-value=0.3 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 010392 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 91 ~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
.++|+|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 496
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.14 E-value=2.6 Score=46.23 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
...+++.|++|+|||+++.++....
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4479999999999999999998764
No 497
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=87.07 E-value=1 Score=43.58 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..+|.|.|++|+|||+++.++....
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 4569999999999999999997753
No 498
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.01 E-value=0.47 Score=47.06 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=22.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHh
Q 010392 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (512)
Q Consensus 86 ~~~~~~V~vvG~~~~GKSTLi~~Ll~~ 112 (512)
.....+|+++|.+|+||||+...|...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 345678999999999999999988764
No 499
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.01 E-value=0.16 Score=54.14 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 89 ~~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
--.++++|++|+|||||++.|++..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3468999999999999999987653
No 500
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.00 E-value=0.49 Score=43.03 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 010392 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (512)
Q Consensus 90 ~~V~vvG~~~~GKSTLi~~Ll~~~ 113 (512)
..++|.|++|+|||||+..+....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997653
Done!