BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010393
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E4M|A Chain A, Crystal Structure Of Hemagglutinin Subcomponent Complex
(Ha- 33HA-17) From Clostridium Botulinum Serotype D
Strain 4947
pdb|2E4M|B Chain B, Crystal Structure Of Hemagglutinin Subcomponent Complex
(Ha- 33HA-17) From Clostridium Botulinum Serotype D
Strain 4947
Length = 286
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 369 LNDFIGKSVMLEPFDSPGMLVIQHETDDELVVT 401
L D+I ++V+L + +P LV+Q+ TDD L+V+
Sbjct: 96 LQDYISRNVILRNYMNPN-LVLQYNTDDTLIVS 127
>pdb|2XJ4|A Chain A, Structure Of The Bacterial Cell Division Regulator Protein
Mipz
Length = 286
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 191 RVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKL 250
RV + + KG +++ + + T GAK + DL + F + W + K+
Sbjct: 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKI 64
Query: 251 TIQLPLTLR---TEAIQDDRPEYASI--------QAILYGPYVLAGHSIGDWDITESATS 299
+ PL L + +RPE + +A+ ++L GD IT A
Sbjct: 65 ELPEPLALNLSDNDVALAERPEEEQVAGFEAAFARAMAECDFILIDTPGGDSAITRMAHG 124
Query: 300 LSDW-ITPIPASY 311
+D +TP+ S+
Sbjct: 125 RADLVVTPMNDSF 137
>pdb|2XIT|A Chain A, Crystal Structure Of Monomeric Mipz
pdb|2XIT|B Chain B, Crystal Structure Of Monomeric Mipz
Length = 294
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 191 RVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKL 250
RV + + KG +++ + + T GAK + DL + F + W + K+
Sbjct: 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKI 64
Query: 251 TIQLPLTLR---TEAIQDDRPEYASI--------QAILYGPYVLAGHSIGDWDITESATS 299
+ PL L + +RPE + +A+ ++L GD IT A
Sbjct: 65 ELPEPLALNLSDNDVALAERPEEEQVAGFEAAFARAMAECDFILIDTPGGDSAITRMAHG 124
Query: 300 LSDW-ITPIPASY 311
+D +TP+ S+
Sbjct: 125 RADLVVTPMNDSF 137
>pdb|2X4M|A Chain A, Yersinia Pestis Plasminogen Activator Pla
pdb|2X4M|B Chain B, Yersinia Pestis Plasminogen Activator Pla
pdb|2X4M|C Chain C, Yersinia Pestis Plasminogen Activator Pla
pdb|2X4M|D Chain D, Yersinia Pestis Plasminogen Activator Pla
Length = 298
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 126 DSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVS 185
DSF TG+ S K + +Y E G+ S+LDWK + + + +S
Sbjct: 12 DSFTVAASTGMLS-GKSHEMLYDAETGRKI---------SQLDWKIKNVAI---LKGDIS 58
Query: 186 WDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKAT 223
WDPY +TL S + S N+ W + N ++ T
Sbjct: 59 WDPYSFLTLNARGWTSLASGSGNMDDYAWMNENQSEWT 96
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYTA----VNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY VNL E+ G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR Y
Sbjct: 240 AESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 288
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYTA----VNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY VNL E+ G + T
Sbjct: 227 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTGR 286
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR Y
Sbjct: 287 AESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 335
>pdb|2X56|A Chain A, Yersinia Pestis Plasminogen Activator Pla (Native)
Length = 292
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 126 DSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVS 185
DSF TG+ S K + +Y E G+ S+LDWK + + + +S
Sbjct: 12 DSFTVAASTGMLS-GKSHEMLYDAETGRKI---------SQLDWKIKNVAI---LKGDIS 58
Query: 186 WDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKAT 223
WDPY +TL S + S N+ W + N ++ T
Sbjct: 59 WDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWT 96
>pdb|4DCB|A Chain A, Y. Pestis Plasminogen Activator Pla In Complex With Human
Plasminogen Activation Loop Peptide Alp11
Length = 297
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 126 DSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVS 185
DSF TG+ S K + +Y E G+ S+LDWK + + + +S
Sbjct: 8 DSFTVAASTGMLS-GKSHEMLYDAETGRKI---------SQLDWKIKNVAI---LKGDIS 54
Query: 186 WDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKAT 223
WDPY +TL S + S N+ W + N ++ T
Sbjct: 55 WDPYSFLTLNARGWTSLASGSGNMDNYDWMNENQSEWT 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,884,775
Number of Sequences: 62578
Number of extensions: 675544
Number of successful extensions: 1654
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1654
Number of HSP's gapped (non-prelim): 9
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)