BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010393
(512 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C0Q1V2|HLDD_SALPC ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi C
(strain RKS4594) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|Q57IC3|HLDD_SALCH ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella
choleraesuis (strain SC-B67) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B4SXC1|HLDD_SALNS ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella newport
(strain SL254) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|P67912|HLDD_SALTY ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|P67913|HLDD_SALTI ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella typhi
GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B4TZW1|HLDD_SALSV ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella
schwarzengrund (strain CVM19633) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B5BHZ3|HLDD_SALPK ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi A
(strain AKU_12601) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|A9MVL2|HLDD_SALPB ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|Q5PC05|HLDD_SALPA ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B4T9A3|HLDD_SALHS ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella heidelberg
(strain SL476) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B5EXC5|HLDD_SALA4 ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella agona
(strain SL483) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B8CVJ3|HLDD_SHEPW ADP-L-glycero-D-manno-heptose-6-epimerase OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=hldD PE=3 SV=1
Length = 317
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 409 SSVFHLVAGLDGGDRTVSLESETYKGCFVYT----AVNL---QSSESTKLGCISESTEAG 461
+ + L G+DG + L FVY VNL Q+SE + +
Sbjct: 192 NGICRLFEGVDGYENGQQLRD------FVYVEDVVKVNLWLWQNSEVSGIFNCGTGQAQS 245
Query: 462 FNNAASFVIE---KGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYF 508
FN+ A+ VI KG EY P KGA +++ A L LR YT F
Sbjct: 246 FNDVANAVIAHHGKGAVEYIPFPDKLKGAYQSYTQADLTKLRAAGYTAEF 295
>sp|A9MKQ6|HLDD_SALAR ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=hldD PE=3
SV=1
Length = 310
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYTA----VNLQSSESTKLGCISEST-- 458
+ S FHL L+ G+ E SE +K FVY VNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLESGKSGIFNLGTGR 239
Query: 459 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|A7MQ91|HLDD_CROS8 ADP-L-glycero-D-manno-heptose-6-epimerase OS=Cronobacter sakazakii
(strain ATCC BAA-894) GN=hldD PE=3 SV=1
Length = 310
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 406 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNL---QSSESTKLGC---I 454
+ S FHL L+ G+ E SE +K F+Y AVNL Q+ S C
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFIYVGDVAAVNLWFWQNGVSGIFNCGTGR 239
Query: 455 SESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 504
+ES +A + A +F +KG EY P KG + F A L +LR Y
Sbjct: 240 AESFQAVADAALAFH-KKGSIEYIPFPEKLKGRYQAFTQADLTNLRAAGY 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,263,223
Number of Sequences: 539616
Number of extensions: 8069831
Number of successful extensions: 17554
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 17505
Number of HSP's gapped (non-prelim): 102
length of query: 512
length of database: 191,569,459
effective HSP length: 122
effective length of query: 390
effective length of database: 125,736,307
effective search space: 49037159730
effective search space used: 49037159730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)