Query 010393
Match_columns 512
No_of_seqs 222 out of 793
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 00:00:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3533 Uncharacterized protei 100.0 2.1E-69 4.6E-74 562.6 22.1 265 2-288 240-505 (589)
2 PF07944 DUF1680: Putative gly 100.0 1.6E-67 3.4E-72 574.3 27.8 269 2-284 246-520 (520)
3 PF05270 AbfB: Alpha-L-arabino 99.8 4.6E-19 1E-23 162.3 9.4 113 376-498 2-119 (142)
4 PF05270 AbfB: Alpha-L-arabino 99.4 4E-13 8.7E-18 123.3 10.3 126 326-470 12-142 (142)
5 cd00249 AGE AGE domain; N-acyl 91.2 0.6 1.3E-05 48.9 7.5 119 2-131 251-374 (384)
6 PF03663 Glyco_hydro_76: Glyco 88.9 0.16 3.6E-06 53.8 0.9 85 2-92 100-189 (370)
7 cd00249 AGE AGE domain; N-acyl 81.6 2.5 5.4E-05 44.2 5.5 101 2-107 185-289 (384)
8 PF07944 DUF1680: Putative gly 74.5 3.3 7E-05 46.1 4.1 79 2-90 187-267 (520)
9 PF15095 IL33: Interleukin 33; 73.8 41 0.00088 33.6 10.8 116 310-440 129-246 (268)
10 TIGR02474 pec_lyase pectate ly 65.1 6.8 0.00015 40.5 3.7 52 56-110 43-94 (290)
11 PF03663 Glyco_hydro_76: Glyco 63.2 4 8.7E-05 43.4 1.7 78 2-87 167-251 (370)
12 COG1331 Highly conserved prote 51.6 30 0.00066 39.7 6.1 85 2-93 480-573 (667)
13 PHA02651 IL-1 receptor antagon 48.1 12 0.00025 35.7 1.9 40 410-452 104-143 (165)
14 PF09586 YfhO: Bacterial membr 46.3 73 0.0016 37.3 8.6 58 191-254 773-831 (843)
15 cd04791 LanC_SerThrkinase Lant 44.4 32 0.0007 34.9 4.7 76 2-87 151-227 (321)
16 PF05726 Pirin_C: Pirin C-term 44.1 37 0.00081 29.3 4.4 55 222-284 31-86 (104)
17 PF07470 Glyco_hydro_88: Glyco 43.5 13 0.00028 38.6 1.7 77 2-104 37-113 (336)
18 PTZ00470 glycoside hydrolase f 42.8 40 0.00087 37.8 5.4 83 2-86 167-251 (522)
19 TIGR03000 plancto_dom_1 Planct 42.3 1.5E+02 0.0032 24.7 7.2 22 205-231 3-24 (75)
20 COG1188 Ribosome-associated he 41.9 55 0.0012 28.7 4.9 48 207-263 7-68 (100)
21 COG2942 N-acyl-D-glucosamine 2 38.3 73 0.0016 34.4 6.2 103 2-106 186-288 (388)
22 cd00100 IL1 Interleukin-1 homo 36.0 23 0.00049 33.0 1.8 28 423-452 103-130 (144)
23 PF09492 Pec_lyase: Pectic aci 35.9 33 0.00072 35.5 3.2 86 2-94 51-145 (289)
24 PF00340 IL1: Interleukin-1 / 35.7 30 0.00065 31.1 2.5 28 424-453 80-107 (120)
25 TIGR02474 pec_lyase pectate ly 35.6 65 0.0014 33.5 5.2 87 2-95 56-151 (290)
26 PLN00119 endoglucanase 34.6 75 0.0016 35.4 5.8 62 10-84 203-264 (489)
27 smart00125 IL1 Interleukin-1 h 32.9 27 0.00058 32.7 1.8 28 423-452 106-133 (147)
28 COG4225 Predicted unsaturated 30.6 20 0.00043 37.9 0.6 60 2-85 48-107 (357)
29 PF07470 Glyco_hydro_88: Glyco 29.5 49 0.0011 34.3 3.3 86 2-102 79-168 (336)
30 COG4225 Predicted unsaturated 29.4 81 0.0017 33.5 4.7 89 2-103 91-180 (357)
31 PHA02811 putative host range p 29.0 77 0.0017 30.8 4.1 40 191-232 32-74 (197)
32 PRK09289 riboflavin synthase s 28.3 1.9E+02 0.0041 28.2 6.9 55 204-259 21-90 (194)
33 PF08547 CIA30: Complex I inte 28.0 3.8E+02 0.0083 24.6 8.7 53 458-510 47-103 (157)
34 TIGR00187 ribE riboflavin synt 28.0 1.8E+02 0.0038 28.6 6.6 56 203-259 20-91 (200)
35 PF03287 Pox_C7_F8A: Poxvirus 27.9 90 0.002 29.3 4.3 40 191-232 32-74 (149)
36 PF07221 GlcNAc_2-epim: N-acyl 27.8 24 0.00052 36.6 0.6 104 2-108 151-263 (346)
37 PF01532 Glyco_hydro_47: Glyco 26.2 23 0.0005 38.7 0.1 88 2-94 89-180 (452)
38 PLN02345 endoglucanase 25.5 1.4E+02 0.003 33.2 5.9 61 10-83 168-228 (469)
39 PRK13020 riboflavin synthase s 24.1 2.1E+02 0.0046 28.2 6.4 56 204-259 21-91 (206)
40 PTZ00470 glycoside hydrolase f 23.1 32 0.0007 38.5 0.6 33 2-35 433-465 (522)
41 PF13464 DUF4115: Domain of un 22.8 2.7E+02 0.0058 22.5 5.8 25 203-232 38-62 (77)
42 COG3533 Uncharacterized protei 22.1 32 0.00068 38.3 0.2 71 2-89 190-260 (589)
43 COG4485 Predicted membrane pro 21.8 2.8E+02 0.0061 32.4 7.4 57 191-254 769-826 (858)
44 PRK09289 riboflavin synthase s 21.6 5E+02 0.011 25.2 8.4 58 202-259 115-187 (194)
45 PF09492 Pec_lyase: Pectic aci 21.4 52 0.0011 34.2 1.6 52 56-110 38-89 (289)
46 PF14200 RicinB_lectin_2: Rici 21.4 4.9E+02 0.011 21.8 7.9 43 406-452 48-91 (105)
47 COG3603 Uncharacterized conser 21.4 1.7E+02 0.0038 26.6 4.6 32 206-257 20-51 (128)
48 smart00725 NEAT NEAr Transport 21.1 3.5E+02 0.0076 24.2 6.7 55 191-256 29-83 (123)
49 PF11745 DUF3304: Protein of u 20.6 1.3E+02 0.0028 26.8 3.8 19 237-255 55-73 (118)
No 1
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=2.1e-69 Score=562.60 Aligned_cols=265 Identities=28% Similarity=0.556 Sum_probs=245.9
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCC-CCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSV-GEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYAD 80 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~-~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD 80 (512)
+|+++||+.++.++.+||+.|+.+|+|+|||+|+ +|+|+++|+|++ .+.|+|||+|||||||++|||.|++|.+|||
T Consensus 240 l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~Rml~~~~d~~yaD 317 (589)
T COG3533 240 LAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARRMLGWGPDSQYAD 317 (589)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 5889999999999999999999999999999965 699999999998 6799999999999999999999999999999
Q ss_pred HHHHHHhccccccCCCCCCCcEEEeccCCCCCCCccCcCCCCCCCCCcccCCCCccchhhhcccceEEeecCCCCcEEEE
Q 010393 81 YYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYII 160 (512)
Q Consensus 81 ~~EralyN~vla~q~~~~~g~~~Y~~pl~~g~~k~~~~~~~~t~~~~f~CC~gtg~e~~akl~~~iY~~~~~~~~~LyVn 160 (512)
+|||+|||++|++|++ |+++|+|+|||..+.. +.+.++.+||||.||++|.++++++|||...+ ++||||
T Consensus 318 vmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr------h~r~~w~~c~CCppn~ar~~as~g~yiY~~~~---d~lyvn 387 (589)
T COG3533 318 VMERALYNHILAGQSL-DGGMFFYFNPLESGGR------HSRQKWFSCWCCPPNGARSVASIGDYIYTRAD---DALYVN 387 (589)
T ss_pred HHHHHHHhccccccCC-CCCeeEEecchhhCCC------ccccccccCCCCCCcHhhhhhhccceEEccCC---CEEEEE
Confidence 9999999999999997 9999999999986542 22567888999999999999999999999976 589999
Q ss_pred EeeCcEEEEEeCceEEEEEeCCCCCCCCCeEEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCeecCCCCCCCEEEE
Q 010393 161 QYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSV 240 (512)
Q Consensus 161 LYipS~l~~~~~gv~i~q~t~~~~p~~~~~~V~ltv~~~~~~~~ftL~lRIP~Wa~~~~~~v~VNG~~~~~~~~~gY~~I 240 (512)
||+.|+++.+..+|.|+|+|+ |||++ +|+|+|... .+..|+|+||||+||. .++++|||+.+.....+||++|
T Consensus 388 Ly~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~-~p~~~tlaLRlP~W~a--~~tl~vNG~~~~~~~~~GYa~i 460 (589)
T COG3533 388 LYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA-QPVLFTLALRLPAWCA--APTLRVNGKEVIQTRGKGYARI 460 (589)
T ss_pred EeecccccccccceEEEeccC--CCCcC--eeEEEEecC-CCceEEEEEecccccC--CcEEEEcCcchhhccCCCeeee
Confidence 999999999998999999999 99998 999999986 7899999999999999 7999999988877788999999
Q ss_pred EeecCCCCEEEEEecceeEEEeccCCcccccceEEEeecceeeEeecc
Q 010393 241 TKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSI 288 (512)
Q Consensus 241 ~R~W~~GD~I~l~Lpm~lr~~~~~d~~~~~~~~vAv~rGPlVlA~~~~ 288 (512)
+|+|++||+|+|.|||++|+++.|+++..+ + ||+|||||||++..
T Consensus 461 ~R~Wq~GDrV~L~LpM~vr~y~nP~~r~~~-G--Ai~rGPlVyc~e~~ 505 (589)
T COG3533 461 SREWQAGDRVELMLPMPVRIYANPDVRHDV-G--AIMRGPLVYCAEAG 505 (589)
T ss_pred eehhcCCCeEEEeecceeEeecCCcchhhh-h--hhhcCCeEEEEecC
Confidence 999999999999999999999999987653 2 99999999999765
No 2
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=1.6e-67 Score=574.32 Aligned_cols=269 Identities=36% Similarity=0.691 Sum_probs=246.2
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCC---CCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCch
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVG---EFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAY 78 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~---E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~Y 78 (512)
+|++|||++|++++++||+.|+++|||+|||+|++ |+|++++++++ ...++|||++||||||+++||++|||++|
T Consensus 246 ~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~--~~~~~EtCas~~~~~~~~~L~~~tgd~~y 323 (520)
T PF07944_consen 246 LYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPN--RLAYAETCASVNMMKLARRLFRLTGDARY 323 (520)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCc--CCCCccccHHHHHHHHHHHHHhcCCCchH
Confidence 58999999999999999999999999999999999 99999999998 44559999999999999999999999999
Q ss_pred HHHHHHHHhccccccCCCCCCCcEEEeccCCCCCCCccCcCCCCCCCCCcccCCCCccchhhhcccceEEeecCCCCcEE
Q 010393 79 ADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVY 158 (512)
Q Consensus 79 aD~~EralyN~vla~q~~~~~g~~~Y~~pl~~g~~k~~~~~~~~t~~~~f~CC~gtg~e~~akl~~~iY~~~~~~~~~Ly 158 (512)
||+|||++||++||++++ +++.++|++||+++..|... ..+++++.+||||+||++|.++||+++||++++ ++||
T Consensus 324 aD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r~~~~~~~~iy~~~~---~~l~ 398 (520)
T PF07944_consen 324 ADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGARGWAKLPDYIYFRDD---DGLY 398 (520)
T ss_pred HHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHHHHHHHhhhheEecC---CEEE
Confidence 999999999999999998 89999999999887755321 356788899999999999999999999999985 6999
Q ss_pred EEEeeCcEEEEEeCc--eEEEEEeCCCCCCCCCeEEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCee-cCCCCCC
Q 010393 159 IIQYISSRLDWKSGQ--IVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQD-LPLPSPG 235 (512)
Q Consensus 159 VnLYipS~l~~~~~g--v~i~q~t~~~~p~~~~~~V~ltv~~~~~~~~ftL~lRIP~Wa~~~~~~v~VNG~~-~~~~~~~ 235 (512)
||||+||+++|+.++ |+|+|+|+ |||++ +|+|+|++. ++.+|+|+||||+|++ +++|+|||++ .....++
T Consensus 399 v~ly~~s~~~~~~~~~~v~i~q~T~--yP~~~--~v~i~v~~~-~~~~f~l~lRIP~Wa~--~~~i~vNG~~~~~~~~~~ 471 (520)
T PF07944_consen 399 VNLYIPSELTWPVGGGTVTITQETD--YPFEG--TVRITVSPD-KPVPFTLRLRIPSWAK--GATIRVNGEPVVDTAVPG 471 (520)
T ss_pred EEEEcceEEEEEECCcEEEEEEecC--CCCCC--CEEEEEEcC-CCccEEEEEEccCCCC--CcEEEECCEeCCCCcCCC
Confidence 999999999999988 88999998 88988 899999875 6899999999999998 7999999999 5666799
Q ss_pred CEEEEEeecCCCCEEEEEecceeEEEeccCCcccccceEEEeecceeeE
Q 010393 236 NFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLA 284 (512)
Q Consensus 236 gY~~I~R~W~~GD~I~l~Lpm~lr~~~~~d~~~~~~~~vAv~rGPlVlA 284 (512)
||++|+|+|++||+|+|+|||++|++++.+..++..+.+||+|||||||
T Consensus 472 gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~rGPlV~a 520 (520)
T PF07944_consen 472 GYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMRGPLVYA 520 (520)
T ss_pred CeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEeCchhcC
Confidence 9999999999999999999999999998444444478899999999997
No 3
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.78 E-value=4.6e-19 Score=162.30 Aligned_cols=113 Identities=22% Similarity=0.237 Sum_probs=90.3
Q ss_pred eeeecCCCCCCceEEeecCCceeEEeccCCCC-----CCceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEE
Q 010393 376 SVMLEPFDSPGMLVIQHETDDELVVTDSFIAQ-----GSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTK 450 (512)
Q Consensus 376 ~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~~~-----~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~ 450 (512)
+++++++++|++||||.|..++|. +...+. .|++|+|||||++ +++|||||+++||.|||| .+..|+
T Consensus 2 ~~~~~s~~~~~ryirh~~~~~~~~--~v~~~s~~~~r~da~f~vvpGLa~-~~~vSfES~~~PG~yLrh-----~~~~v~ 73 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGSLVRLD--PVSSSSSALDRADATFRVVPGLAD-SSCVSFESVNYPGYYLRH-----SNFRVR 73 (142)
T ss_dssp EEEEEESSSTTEEEEEETTEEEEE--ES-SSGGHHHHHGG-EEEEE-SS--TTCEEEEESSSTTEEEEE-----ETTEEE
T ss_pred eEEEECCCCCCeEEEEcCceEEEe--eccCCcchhhccCceEEEEEccCC-CCEEEEEECCCCCcEEEE-----ECCEEE
Confidence 468999999999999999977764 344444 4899999999988 689999999999999999 488999
Q ss_pred EEeecCCCccccccccceecccCCCccCCeeEEEecCCCceeeccccc
Q 010393 451 LGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLS 498 (512)
Q Consensus 451 l~~~~~~~~~~f~~~asF~~~~gl~~~~~~Sf~a~g~~~~~ll~pl~~ 498 (512)
|+ +. +++..|.++|+|+..+||+...-+||+...-++.||.+=-+.
T Consensus 74 l~-~~-d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~~~~ 119 (142)
T PF05270_consen 74 LE-KN-DGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHYNGE 119 (142)
T ss_dssp EE-E---SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEETTE
T ss_pred Ee-ec-CCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEECCE
Confidence 99 43 788899999999999999995557999999999999764333
No 4
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.45 E-value=4e-13 Score=123.29 Aligned_cols=126 Identities=20% Similarity=0.267 Sum_probs=87.8
Q ss_pred eEEEecCCcceEEeecCCC-CCccccceEEEEEecCCCCCccccccCCCCceeeecCCCCCCceEEeecCCceeEEeccC
Q 010393 326 KFVLTNSNQSITMEKFPKS-GTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSF 404 (512)
Q Consensus 326 ~f~~~~~~~~l~~~~~p~~-g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~l~p~~~p~~~v~~~~~~~~l~v~~~~ 404 (512)
.-.+.+.+..+.++..... ++-....++||++.+-.+ ...|++|+-+.||.||||.++.++| +.+.
T Consensus 12 ~ryirh~~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~-----------~~~vSfES~~~PG~yLrh~~~~v~l--~~~d 78 (142)
T PF05270_consen 12 DRYIRHRGSLVRLDPVSSSSSALDRADATFRVVPGLAD-----------SSCVSFESVNYPGYYLRHSNFRVRL--EKND 78 (142)
T ss_dssp TEEEEEETTEEEEEES-SSGGHHHHHGG-EEEEE-SS------------TTCEEEEESSSTTEEEEEETTEEEE--EE--
T ss_pred CeEEEEcCceEEEeeccCCcchhhccCceEEEEEccCC-----------CCEEEEEECCCCCcEEEEECCEEEE--eecC
Confidence 3346677777777764433 333455799999865222 2378999999999999999885444 5443
Q ss_pred CC---CCCceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEEeec-CCCccccccccceec
Q 010393 405 IA---QGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCIS-ESTEAGFNNAASFVI 470 (512)
Q Consensus 405 ~~---~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~l~~~~-~~~~~~f~~~asF~~ 470 (512)
.+ ..|+.|..+|||.+ +|.|||||.++||+||||. +..++|.-.+ .+.++.|+++|||..
T Consensus 79 ~s~~F~~dATF~~~~Gl~~-~g~~sfeS~n~Pg~ylrh~-----~~~l~l~~~~g~d~~~~f~~datf~v 142 (142)
T PF05270_consen 79 GSALFREDATFCPRPGLAG-PGYVSFESYNYPGRYLRHY-----NGELYLAPIGGYDNTDSFRADATFRV 142 (142)
T ss_dssp SSHHHHHHT-EEEEE-SSS-TTEEEEEESSSTTEEEEEE-----TTEEEEEESSSGG-SHHHHHHT-EEE
T ss_pred CCccccCCceEEEecCCCC-CCcceEEEecCCCeEEEEE-----CCEEEEecCCCcCcchhhccccEEeC
Confidence 32 27889999999999 7999999999999999995 8899999321 134677999999963
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=91.25 E-value=0.6 Score=48.89 Aligned_cols=119 Identities=14% Similarity=0.045 Sum_probs=71.5
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceE-e-ecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTY-A-TGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYA 79 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y-~-tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~Ya 79 (512)
+|+++||+.|++.++..|+.+.+ +.. . .||.-. .+..+...+ ...+.-.....++++....|++++||.+|.
T Consensus 251 l~~~~~~~~~~~~a~~~~~~~~~-~~~d~~~G~~~~--~~~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~ 324 (384)
T cd00249 251 IASRSGQAWLIEKARRLFDLALA-LGWDPERGGLYY--SFLDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYW 324 (384)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHH-hCcCccCCCEEE--eeECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHH
Confidence 47889999999999999998875 333 2 232211 011111111 122444555788889999999999999999
Q ss_pred HHHHHH---HhccccccCCCCCCCcEEEeccCCCCCCCccCcCCCCCCCCCcccC
Q 010393 80 DYYERS---LTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCC 131 (512)
Q Consensus 80 D~~Era---lyN~vla~q~~~~~g~~~Y~~pl~~g~~k~~~~~~~~t~~~~f~CC 131 (512)
+.++++ +++..+... .++.+.+..+-+...... . ..|++.++.+-||
T Consensus 325 ~~~~~~~~~~~~~~~d~~---~G~w~~~~~~~g~~~~~~-~-~~~~~~yH~~~a~ 374 (384)
T cd00249 325 QWYQRAWAYLWRHFIDPE---YGLWFGYLDADGKVLLTP-K-GPAKTFYHVVRAL 374 (384)
T ss_pred HHHHHHHHHHHHhcCCCC---CCcceeeECCCCCCcCCC-C-CCCCCCccHHhHH
Confidence 999887 455455332 234555665433221110 0 4566666666565
No 6
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=88.88 E-value=0.16 Score=53.85 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=54.6
Q ss_pred eEEEcCCh-----hHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCC
Q 010393 2 RYEVTGDQ-----LHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEI 76 (512)
Q Consensus 2 ~Ye~TGD~-----~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~ 76 (512)
.||+|||+ +|++.|+.-|+.+....- +...+.+=+|..... .....+--+|+.--++.++-+|++.|+|.
T Consensus 100 aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd--~~~cgGGi~W~~~~~---~~~~~~Kna~sN~~~~~laarL~~~t~~~ 174 (370)
T PF03663_consen 100 AYELTGDQPSDNPKYLDLAKEIFDFLISGWD--DTSCGGGIWWSIDDT---NSGYDYKNAISNGPAAQLAARLYRITGDQ 174 (370)
T ss_dssp HHHHH--H-----HHHHHHHHHHHHHHHTB---SGG-GS-BEEET-------TEEEEEEHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHhhCCCcchHHHHHHHHHHHHHHHHHhcC--CccCCCCcccccccc---CCCCCcccccchHHHHHHHHHHHHhcCCh
Confidence 48999999 999999999998873222 221222223321100 01244667899999999999999999999
Q ss_pred chHHHHHHHHhccccc
Q 010393 77 AYADYYERSLTNGVLG 92 (512)
Q Consensus 77 ~YaD~~EralyN~vla 92 (512)
+|+|..|++ ||=+..
T Consensus 175 ~Yl~~A~~~-~~W~~~ 189 (370)
T PF03663_consen 175 TYLDWAKKI-YDWMRD 189 (370)
T ss_dssp HHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHH-HHHhhc
Confidence 999999987 444444
No 7
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=81.59 E-value=2.5 Score=44.25 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=62.8
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEe--ecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYA--TGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYA 79 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~--tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~Ya 79 (512)
+|++|||+.|++.++..++.+.+ +.+- .|+.- |++..+..+.........+---..+++++.-+|.++++|.+|.
T Consensus 185 l~~~tgd~~~~~~A~~l~~~~~~-~~~~~~~G~~~--e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~ 261 (384)
T cd00249 185 AYEATGEQKYLDRADEIADLILD-RFIDAESGVVR--EHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLI 261 (384)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH-HhcCcccCeEE--EEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHH
Confidence 46789999999999999998875 4442 45542 5553322211110111122222345667777888899999999
Q ss_pred HHHHHHHhccccc-cCCCCCCCcEEE-ecc
Q 010393 80 DYYERSLTNGVLG-IQRGTEPGVMIY-LLP 107 (512)
Q Consensus 80 D~~EralyN~vla-~q~~~~~g~~~Y-~~p 107 (512)
+.+|+. ++.++. ..++ +.|.++| ..+
T Consensus 262 ~~a~~~-~~~~~~~~~d~-~~G~~~~~~~~ 289 (384)
T cd00249 262 EKARRL-FDLALALGWDP-ERGGLYYSFLD 289 (384)
T ss_pred HHHHHH-HHHHHHhCcCc-cCCCEEEeeEC
Confidence 999875 566665 3454 5566766 544
No 8
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=74.50 E-value=3.3 Score=46.11 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=49.3
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhh--HHHHHHHHHHHhccCCCchH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT--YNMLKVSRHLFRWTKEIAYA 79 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas--~nmlkl~~~Lf~~tgd~~Ya 79 (512)
+|++|||++|++.|+.|.+.-...- .+ .....+.++.. .....+..+. ..|.+-...+++.|||.+|.
T Consensus 187 LY~~Tgd~~yL~lA~~f~~~~~~~~------~~---~~~~~d~~~~~-~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~ 256 (520)
T PF07944_consen 187 LYEITGDERYLDLAEYFVDQRGFDP------YD---LAYGQDHLPGR-HANTHIGHAVRAMYLYSGAADLYEETGDEEYL 256 (520)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCC------Cc---hhhcCccCCCc-cccceeeEEEEhhhhhhHHHHHHHHhCCHHHH
Confidence 6999999999999999987532211 00 11111122221 1122222222 34566677899999999999
Q ss_pred HHHHHHHhccc
Q 010393 80 DYYERSLTNGV 90 (512)
Q Consensus 80 D~~EralyN~v 90 (512)
+..|+..-|-+
T Consensus 257 ~a~~~~w~~v~ 267 (520)
T PF07944_consen 257 DAAENFWDNVV 267 (520)
T ss_pred HHHHHHHHHHH
Confidence 99999876644
No 9
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=73.83 E-value=41 Score=33.60 Aligned_cols=116 Identities=20% Similarity=0.274 Sum_probs=57.3
Q ss_pred CCCCceeeeeeecCCeeEEEecCCcceEEeecCCCCCccccceEEEEEecCCCCCccccccCCCCcee--eecCCCCCCc
Q 010393 310 SYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSV--MLEPFDSPGM 387 (512)
Q Consensus 310 ~~~~~~~~~~~~~g~~~f~~~~~~~~l~~~~~p~~g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v--~l~p~~~p~~ 387 (512)
.||+|-++|.-++|.-... ++-.- +...-=-..||.......++.... +.+|+.+ .|.|-..++-
T Consensus 129 TYNDQsitFvledgsY~I~---------VeDl~--k~qEKDKVLlryYeSq~pS~esgd--gvDGk~LMVnlSPtkdkDf 195 (268)
T PF15095_consen 129 TYNDQSITFVLEDGSYEIY---------VEDLG--KDQEKDKVLLRYYESQCPSSESGD--GVDGKKLMVNLSPTKDKDF 195 (268)
T ss_dssp ETTTEEEEEEE-SS-EEEE---------EEE----S------EEEEEEE----TTTS------S---EEEEEESS--SSE
T ss_pred cccCceEEEEEeCCcEEEE---------ehhcc--cccccceEEEEeccCCCCcccCCC--CccceEEEEEcCCccchhe
Confidence 3566666665544433222 22221 333344567886654333322222 2456655 7899999988
Q ss_pred eEEeecCCceeEEeccCCCCCCceEEEeeccCCCCCeEEEeecCCcceEEEEe
Q 010393 388 LVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTA 440 (512)
Q Consensus 388 ~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~ 440 (512)
.+--...+-.+.+.---...+|..|.+.--- .+.+||||-.|+||.|+-+-
T Consensus 196 ~LHAN~keHSVeLqKcE~~lpdQaff~lh~~--ss~~vsfeck~~pg~~igvk 246 (268)
T PF15095_consen 196 LLHANNKEHSVELQKCENPLPDQAFFVLHKK--SSECVSFECKNNPGVFIGVK 246 (268)
T ss_dssp EEEEETTTTEEEEEE--SS--TTT-EEEEE---SSS-EEEEESSSTTEEEEES
T ss_pred EEecCCccceeeeeecCCCCCcceeEEEecC--CCceeEEEecCCCceEEeee
Confidence 7777666666655555557888888887433 36899999999999999864
No 10
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=65.15 E-value=6.8 Score=40.53 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=41.3
Q ss_pred chhhHHHHHHHHHHHhccCCCchHHHHHHHHhccccccCCCCCCCcEEEeccCCC
Q 010393 56 SCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAP 110 (512)
Q Consensus 56 TCas~nmlkl~~~Lf~~tgd~~YaD~~EralyN~vla~q~~~~~g~~~Y~~pl~~ 110 (512)
.=+|+.-|++.-++++.++|.+|-|.++|++ |-||++|.+ .+|.-+|+ |+..
T Consensus 43 N~aT~~e~~fLa~~y~~t~d~~y~~A~~rgl-d~LL~aQyp-nGGWPQf~-p~~~ 94 (290)
T TIGR02474 43 NGATVTEIRYLAQVYQQEKNAKYRDAARKGI-EYLLKAQYP-NGGWPQFY-PLKG 94 (290)
T ss_pred CccHHHHHHHHHHHHHhcCchhHHHHHHHHH-HHHHhhhCC-CCCcCccc-CCcC
Confidence 3456777788888999999999999999986 789999997 55554444 7654
No 11
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=63.23 E-value=4 Score=43.39 Aligned_cols=78 Identities=22% Similarity=0.191 Sum_probs=44.9
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceE-e-ecCCCCCCCCCCCcccccCC-CCCcccch---hhHHHHHHHHHHHhccCC
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTY-A-TGGTSVGEFWSDPKRLASNL-DSNTEESC---TTYNMLKVSRHLFRWTKE 75 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y-~-tGG~s~~E~f~~~~~l~~~l-~~~~~ETC---as~nmlkl~~~Lf~~tgd 75 (512)
+|++|||+.|++.|+..|+.+.+.+++ . +|-+-.+ +...- -....++- ++--+|.-+..|++.|++
T Consensus 167 L~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg--------~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~ 238 (370)
T PF03663_consen 167 LYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDG--------INIDGNCTNINKTKWTYNQGVFLGAAAYLYNATND 238 (370)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--E--------E-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--
T ss_pred HHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeC--------CccCCCCCcCCCceechHHHHHHHHHHHHHHhcCC
Confidence 688999999999999999999874554 1 1211110 10000 00122333 334478889999999987
Q ss_pred C-chHHHHHHHHh
Q 010393 76 I-AYADYYERSLT 87 (512)
Q Consensus 76 ~-~YaD~~Eraly 87 (512)
. .|.|..++++-
T Consensus 239 ~~~yl~~A~~la~ 251 (370)
T PF03663_consen 239 EQTYLDRAEKLAD 251 (370)
T ss_dssp H-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 6 99999988763
No 12
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.56 E-value=30 Score=39.68 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=54.6
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEe-ecCCCCCCCCCCCc---ccc---cCCCCCcccchhhHHHHHHHHHHHhccC
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYA-TGGTSVGEFWSDPK---RLA---SNLDSNTEESCTTYNMLKVSRHLFRWTK 74 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~-tGG~s~~E~f~~~~---~l~---~~l~~~~~ETCas~nmlkl~~~Lf~~tg 74 (512)
+||+|+|.+|++.|...++.+.. +..- .|| +|..+. +|. ....+.-.++=+++... -.-+|-++|+
T Consensus 480 lye~t~d~~yL~~A~~L~~~~i~-~f~d~~gG-----f~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~-~L~~Ls~ltg 552 (667)
T COG1331 480 LYEATGDLAYLEKAIELADEAIA-DFWDDEGG-----FYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQ-ALLRLSLLTG 552 (667)
T ss_pred HHHhhCcHHHHHHHHHHHHHHHH-HhcCCCCC-----cccCCCcccccccCCCCCCCCCCCCHHHHHHH-HHHHHHhhcC
Confidence 58999999999999999999874 3332 233 221111 121 11123333555554443 4456788999
Q ss_pred CCchHHHHHHHH--hcccccc
Q 010393 75 EIAYADYYERSL--TNGVLGI 93 (512)
Q Consensus 75 d~~YaD~~Eral--yN~vla~ 93 (512)
|.+|.|..|++| +=+.+..
T Consensus 553 ~~~y~e~A~~~L~a~~~~~~~ 573 (667)
T COG1331 553 DARYLEAAEDILQAFAGLAER 573 (667)
T ss_pred chhHHHHHHHHHHHHHHHHHh
Confidence 999999999998 6555554
No 13
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=48.06 E-value=12 Score=35.66 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=25.5
Q ss_pred ceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 010393 410 SVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLG 452 (512)
Q Consensus 410 s~f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 452 (512)
-.|..---=.| .+.+|||+.+||||+.... -....-|.|-
T Consensus 104 kRFlFyr~~sG--~tstFESaafPgWfIsTs~-~e~~~PV~Lt 143 (165)
T PHA02651 104 KRFAFIRSDNG--HTSTFESVAFPGWFLCTSS-GDGIEPVGLT 143 (165)
T ss_pred eeEEEEEccCC--CceEEEecCCCCcEEEecc-ccCCcceEee
Confidence 33444333345 4999999999999998641 0112467776
No 14
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=46.32 E-value=73 Score=37.33 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=42.8
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCeecCCC-CCCCEEEEEeecCCCCEEEEEe
Q 010393 191 RVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLP-SPGNFLSVTKTWSSDDKLTIQL 254 (512)
Q Consensus 191 ~V~ltv~~~~~~~~ftL~lRIP~Wa~~~~~~v~VNG~~~~~~-~~~gY~~I~R~W~~GD~I~l~L 254 (512)
+++.+|+.. .+.-.|.+-||-- + |++++||||+++.. ..++|+-|.-. +...+|+++.
T Consensus 773 ~i~~~i~~~--~~~~~l~~sipy~-~--GW~~~vdGk~~~~~~~~~~f~g~~l~-~G~h~i~~~y 831 (843)
T PF09586_consen 773 HISGTITAT--SKDGYLVLSIPYD-K--GWKAYVDGKKVEIEKVNGGFMGVPLP-KGEHQIELKY 831 (843)
T ss_pred EEEEEEEec--CCCcEEEEEeccC-C--CCEEEECCEEccHhhhcCeEEEEEEc-CCceEEEEEE
Confidence 677777762 2344788899964 3 79999999999876 47889999876 5556666665
No 15
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=44.41 E-value=32 Score=34.89 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=47.0
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhh-HHHHHHHHHHHhccCCCchHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT-YNMLKVSRHLFRWTKEIAYAD 80 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas-~nmlkl~~~Lf~~tgd~~YaD 80 (512)
+|+.|||++|++.++...+.+.++..-..+|. .|.... . ....--|.- -.++....+|++.++|.+|.|
T Consensus 151 l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~----~~~~~~---~---~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~ 220 (321)
T cd04791 151 LYKATGDSRYLELAEEALDKELARAVVDDGGL----LQVDEG---A---RLLPYLCSGSAGLGLLMLRLEAITGDKRWRD 220 (321)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhhccCCCCc----eEcCCC---C---ccCcccCCCcHHHHHHHHHHHHhcCCHHHHH
Confidence 47899999999999999998765332222221 111100 0 011124433 444445567889999999999
Q ss_pred HHHHHHh
Q 010393 81 YYERSLT 87 (512)
Q Consensus 81 ~~Eraly 87 (512)
.+|+++-
T Consensus 221 ~a~~~~~ 227 (321)
T cd04791 221 EADGIAH 227 (321)
T ss_pred HHHHHHH
Confidence 9998743
No 16
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=44.06 E-value=37 Score=29.25 Aligned_cols=55 Identities=15% Similarity=0.320 Sum_probs=31.8
Q ss_pred EEECCeecCCCCCCCEEEEEeecCCCCEEEEEec-ceeEEEeccCCcccccceEEEeecceeeE
Q 010393 222 ATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLP-LTLRTEAIQDDRPEYASIQAILYGPYVLA 284 (512)
Q Consensus 222 v~VNG~~~~~~~~~gY~~I~R~W~~GD~I~l~Lp-m~lr~~~~~d~~~~~~~~vAv~rGPlVlA 284 (512)
+.|||+.. ...++..+.++ +||.|+|+-. -..|+.-+...+= +---+.|||+|+.
T Consensus 31 ~~v~~~~~-~~~~~~~~~l~----~g~~i~~~a~~~~a~~lll~GePl---~Epi~~~GpFVmn 86 (104)
T PF05726_consen 31 VEVGGEED-PLEAGQLVVLE----DGDEIELTAGEEGARFLLLGGEPL---NEPIVQYGPFVMN 86 (104)
T ss_dssp EEETTTTE-EEETTEEEEE-----SECEEEEEESSSSEEEEEEEE-------S--EEETTEEES
T ss_pred EEECCCcc-eECCCcEEEEC----CCceEEEEECCCCcEEEEEEccCC---CCCEEEECCcccC
Confidence 55666640 11256677776 7999999998 7777742211100 0125789999985
No 17
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=43.53 E-value=13 Score=38.55 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=45.0
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 81 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~ 81 (512)
.|+.|||++|++.++.+.+.......- +. ...+|....++ -.+++.|+|.+|.+.
T Consensus 37 ~~~~tgd~~~~~~a~~~~~~~~~~~~~--------~~--------------~~d~~~~g~~~---~~~y~~t~d~~y~~~ 91 (336)
T PF07470_consen 37 AYEYTGDERYLDYAERWADRFIEEDGS--------DY--------------NLDDHDIGFLL---LDLYERTGDEKYKDA 91 (336)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHT--------TT--------------SCCGTTHHHHH---HHHHHHH-THHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhccCC--------cc--------------CCchhhhHHHH---HHHHHHhCCHHHHHH
Confidence 478999999999999988876542211 11 11223333332 239999999999999
Q ss_pred HHHHHhccccccCCCCCCCcEEE
Q 010393 82 YERSLTNGVLGIQRGTEPGVMIY 104 (512)
Q Consensus 82 ~EralyN~vla~q~~~~~g~~~Y 104 (512)
+++++- .++..+.....|.+.+
T Consensus 92 ~~~~a~-~~l~~~~~~~~G~~~~ 113 (336)
T PF07470_consen 92 AIQAAD-WLLARRPRTSDGGFWH 113 (336)
T ss_dssp HHHHHH-HHHHTSCBECTGCBEC
T ss_pred HHHHHH-HHHHhCCCCCCCcccc
Confidence 987764 4555432213355554
No 18
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=42.78 E-value=40 Score=37.81 Aligned_cols=83 Identities=18% Similarity=0.136 Sum_probs=45.6
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhh-HHHHHH-HHHHHhccCCCchH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT-YNMLKV-SRHLFRWTKEIAYA 79 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas-~nmlkl-~~~Lf~~tgd~~Ya 79 (512)
.|++|||+.|++.|...-+.+..---..+|---..-.+... ....-.-...++|.+ ...|.| -.+|-++|||++|.
T Consensus 167 Ay~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g--~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~ 244 (522)
T PTZ00470 167 AYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG--RKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYA 244 (522)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC--CCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHH
Confidence 37899999999988888888764222233321111111000 000000012233322 333333 45689999999999
Q ss_pred HHHHHHH
Q 010393 80 DYYERSL 86 (512)
Q Consensus 80 D~~Eral 86 (512)
|..+|+.
T Consensus 245 ~~a~~i~ 251 (522)
T PTZ00470 245 EYVDKVM 251 (522)
T ss_pred HHHHHHH
Confidence 9999885
No 19
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=42.25 E-value=1.5e+02 Score=24.74 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=17.9
Q ss_pred eEEEEeccCCccCCCcEEEECCeecCC
Q 010393 205 TSLNLRIPTWTSSNGAKATLNGQDLPL 231 (512)
Q Consensus 205 ftL~lRIP~Wa~~~~~~v~VNG~~~~~ 231 (512)
.+|.|.+| . +++|+|||++.+.
T Consensus 3 a~itv~vP---a--dAkl~v~G~~t~~ 24 (75)
T TIGR03000 3 ATITVTLP---A--DAKLKVDGKETNG 24 (75)
T ss_pred eEEEEEeC---C--CCEEEECCeEccc
Confidence 47888999 2 6899999998764
No 20
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=41.95 E-value=55 Score=28.71 Aligned_cols=48 Identities=25% Similarity=0.332 Sum_probs=33.6
Q ss_pred EEEeccCCccC--------------CCcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecceeEEEec
Q 010393 207 LNLRIPTWTSS--------------NGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAI 263 (512)
Q Consensus 207 L~lRIP~Wa~~--------------~~~~v~VNG~~~~~~~~~gY~~I~R~W~~GD~I~l~Lpm~lr~~~~ 263 (512)
..+|+=-|... ++-+|.|||+.+... ..=+.||+|+|.|.-......+
T Consensus 7 ~~mRLDKwL~~aR~~KrRslAk~~~~~GrV~vNG~~aKpS---------~~VK~GD~l~i~~~~~~~~v~V 68 (100)
T COG1188 7 DRMRLDKWLWAARFIKRRSLAKEMIEGGRVKVNGQRAKPS---------KEVKVGDILTIRFGNKEFTVKV 68 (100)
T ss_pred cceehHHHHHHHHHhhhHHHHHHHHHCCeEEECCEEcccc---------cccCCCCEEEEEeCCcEEEEEE
Confidence 35677777542 256899999988543 2236899999999877776543
No 21
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=38.34 E-value=73 Score=34.39 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=73.0
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 81 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~ 81 (512)
.|++||++.|++-+...-+.|.. |..-..--...|||..+..-.........|-==..++++|..++-+.-++..-++.
T Consensus 186 ~~e~~~~~~~~~~A~~ia~l~~~-rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~~~~l~~~ 264 (388)
T COG2942 186 AYEATGEKTWLDRADRIADLIIS-RFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRGRAWLIEA 264 (388)
T ss_pred HHhccCchhHHHHHHHHHHHHHH-HhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhchhHHHHH
Confidence 38999999999888887787763 43333333358998665522211123456666678999999999999999888888
Q ss_pred HHHHHhccccccCCCCCCCcEEEec
Q 010393 82 YERSLTNGVLGIQRGTEPGVMIYLL 106 (512)
Q Consensus 82 ~EralyN~vla~q~~~~~g~~~Y~~ 106 (512)
.=|..-|++--+.++ +.|.++|-.
T Consensus 265 A~~lf~~a~~~g~d~-~~gg~~~sl 288 (388)
T COG2942 265 ARRLFDIAVADGWDP-ERGGAYYSL 288 (388)
T ss_pred HHHHHHHHHHhccCc-ccCeEEEEe
Confidence 777778888778776 667777653
No 22
>cd00100 IL1 Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Probab=35.96 E-value=23 Score=33.05 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=21.0
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 010393 423 RTVSLESETYKGCFVYTAVNLQSSESTKLG 452 (512)
Q Consensus 423 g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 452 (512)
.+.+|||+.+||||+-... .....|.|.
T Consensus 103 ~~~~FeSaa~PgWfIsTs~--~~~~PV~l~ 130 (144)
T cd00100 103 NKNYFESAAFPNWFIATKQ--EEDKPVFLA 130 (144)
T ss_pred CceEEEEccCCCcEEEecc--cCCeEEEee
Confidence 3899999999999998631 234566665
No 23
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=35.89 E-value=33 Score=35.55 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=54.3
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCC-----
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEI----- 76 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~----- 76 (512)
+|+.|+|++|++++....+.+.. --|..||.-. +|.......++++ ---=+.+|.|.|.+....-.++-
T Consensus 51 ~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWPQ--~yP~~~~Y~~~IT---fNDdam~~vl~lL~~v~~~~~~~~~v~~ 124 (289)
T PF09492_consen 51 VYQATKDPRYREAFLKGLDYLLK-AQYPNGGWPQ--FYPLRGGYHDHIT---FNDDAMVNVLELLRDVAEGKGDFAFVDE 124 (289)
T ss_dssp HHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--BS--ECS--SGGGGSEE----GGGHHHHHHHHHHHHHCT-TTSTTS-H
T ss_pred HHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCCc--cCCCCCCCCCceE---EccHHHHHHHHHHHHHHhhcCCccccCH
Confidence 57889999999999999999984 7899999875 2222222222111 11124578888888888888888
Q ss_pred ----chHHHHHHHHhccccccC
Q 010393 77 ----AYADYYERSLTNGVLGIQ 94 (512)
Q Consensus 77 ----~YaD~~EralyN~vla~q 94 (512)
++.+.++|.+ ..||..|
T Consensus 125 ~~~~r~~~A~~kgi-~ciL~tQ 145 (289)
T PF09492_consen 125 SLRARARAAVDKGI-DCILKTQ 145 (289)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHS
T ss_pred HHHHHHHHHHHHHH-HHHHHHH
Confidence 7888888875 3455543
No 24
>PF00340 IL1: Interleukin-1 / 18; InterPro: IPR000975 Interleukin-1 alpha and interleukin-1 beta (IL-1 alpha and IL-1 beta) are cytokines that participate in the regulation of immune responses, inflammatory reactions, and hematopoiesis []. Two types of IL-1 receptor, each with three extracellular immunoglobulin (Ig)-like domains, limited sequence similarity (28%) and different pharmacological characteristics have been cloned from mouse and human cell lines: these have been termed type I and type II receptors []. The receptors both exist in transmembrane (TM) and soluble forms: the soluble IL-1 receptor is thought to be post-translationally derived from cleavage of the extracellular portion of the membrane receptors. Both IL-1 receptors appear to be well conserved in evolution, and map to the same chromosomal location []. The receptors can both bind all three forms of IL-1 (IL-1 alpha, IL-1 beta and IL-1RA). The crystal structures of IL1A and IL1B [] have been solved, showing them to share the same 12-stranded beta-sheet structure as both the heparin binding growth factors and the Kunitz-type soybean trypsin inhibitors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Several regions, especially the loop between strands 4 and 5, have been implicated in receptor binding. The Vaccinia virus genes B15R and B18R each encode proteins with N-terminal hydrophobic sequences, possible sites for attachment of N-linked carbohydrate and a short C-terminal hydrophobic domain []. These properties are consistent with the mature proteins being either virion, cell surface or secretory glycoproteins. Protein sequence comparisons reveal that the gene products are related to each other (20% identity) and to the Ig superfamily. The highest degree of similarity is to the human and murine interleukin-1 receptors, although both proteins are related to a wide range of Ig superfamily members, including the interleukin-6 receptor. A novel method for virus immune evasion has been proposed in which the product of one or both of these proteins may bind interleukin-1 and/or interleukin-6, preventing these cytokines reaching their natural receptors []. A similar gene product from Cowpox virus (CPV) has also been shown to specifically bind murine IL-1 beta []. This entry represents Interleukin-1. ; GO: 0005615 extracellular space; PDB: 1J0S_A 3F62_B 2VXT_I 1MD6_A 2KKI_A 2L5X_D 2WRY_A 3NJ5_A 8I1B_A 2MIB_A ....
Probab=35.65 E-value=30 Score=31.05 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=20.4
Q ss_pred eEEEeecCCcceEEEEeeccCCCCcEEEEe
Q 010393 424 TVSLESETYKGCFVYTAVNLQSSESTKLGC 453 (512)
Q Consensus 424 ~vsles~~~pg~~l~~~~~~~~g~~~~l~~ 453 (512)
+-+|||+.+|||||.... ..+..|.|.+
T Consensus 80 ~~~FESaa~PgwFIaT~~--~~~~pv~l~~ 107 (120)
T PF00340_consen 80 TSTFESAAYPGWFIATSP--EDNQPVELTK 107 (120)
T ss_dssp EEEEEESSSTTEEEEBES--SSTEEEEEES
T ss_pred ceEEEEccCCCeEEEecc--cCCceEEEEe
Confidence 445999999999998642 2455666764
No 25
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=35.64 E-value=65 Score=33.48 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=54.0
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCC------
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKE------ 75 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd------ 75 (512)
+|+.|+|++|++++....+.+.. =.|..||....+-... ...++++-+- =+.++.|.+.+.+.+..++
T Consensus 56 ~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWPQf~p~~~--~Y~~~ITfND---~am~~vl~lL~~i~~~~~~~~~~~~ 129 (290)
T TIGR02474 56 VYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWPQFYPLKG--GYSDAITYND---NAMVNVLTLLDDIANGKDPFDVFPD 129 (290)
T ss_pred HHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcCcccCCcC--CcccccccCc---HHHHHHHHHHHHHHhccCCcccccH
Confidence 57889999999999999999984 7899999986554222 2223222111 1223566666666543332
Q ss_pred ---CchHHHHHHHHhccccccCC
Q 010393 76 ---IAYADYYERSLTNGVLGIQR 95 (512)
Q Consensus 76 ---~~YaD~~EralyN~vla~q~ 95 (512)
.++...++|++- -||..|-
T Consensus 130 ~~~~r~~~Ai~Rgid-~ILktQ~ 151 (290)
T TIGR02474 130 STRTRAKTAVTKGIE-CILKTQV 151 (290)
T ss_pred HHHHHHHHHHHHHHH-HHHHhhc
Confidence 356666666653 4555553
No 26
>PLN00119 endoglucanase
Probab=34.57 E-value=75 Score=35.42 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHHHHH
Q 010393 10 LHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYER 84 (512)
Q Consensus 10 ~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~Er 84 (512)
+++++|+..|+...+++..-.......+ ..|+++.-.=+++.-+-.||+.|||.+|.++++.
T Consensus 203 ~lL~~Ak~~y~fA~~~~g~y~~~~~~~~-------------g~Y~ss~~~DEl~WAAawLY~aTgd~~Yl~~~~~ 264 (489)
T PLN00119 203 ILIGHAKDLFEFAKAHPGLYQNSIPNAG-------------GFYASSGYEDELLWAAAWLHRATNDQTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCCCCC-------------CCCCCCchhhHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4689999999998776532111111111 1233344445788889999999999999999874
No 27
>smart00125 IL1 Interleukin-1 homologues. Cytokines with various biological functions. Interluekin 1 alpha and beta are also known as hematopoietin and catabolin.
Probab=32.87 E-value=27 Score=32.68 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=20.6
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 010393 423 RTVSLESETYKGCFVYTAVNLQSSESTKLG 452 (512)
Q Consensus 423 g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 452 (512)
.+.+|||+.+||||+-... ....-|.|.
T Consensus 106 ~~~~FeSaa~PgWfIsTs~--~~~~PV~l~ 133 (147)
T smart00125 106 NKVEFESAAHPNWFISTSQ--EEDKPVFLG 133 (147)
T ss_pred CceEEEEccCCCcEEEecc--ccCceEEee
Confidence 4889999999999998631 233446665
No 28
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=30.63 E-value=20 Score=37.93 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=43.3
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 81 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~ 81 (512)
+||.|||++|++....+.+.-...+ | -+++.+ +.+++.+..--|++.|+|++|...
T Consensus 48 ~~eAT~d~~yl~~l~~~~d~~i~~~-----g-------~~~~~i------------d~i~~g~~L~~L~e~T~~~~Yl~~ 103 (357)
T COG4225 48 AYEATGDAEYLDYLKTWFDEQIDEG-----G-------LPPRNI------------DHIAAGLTLLPLYEQTGDPRYLEA 103 (357)
T ss_pred HHHHcCcHHHHHHHHHHHHhhhccC-----C-------CCccch------------hhhccCceeeehhhhhCCHHHHHH
Confidence 5899999999999999988755432 2 122211 234445667789999999999988
Q ss_pred HHHH
Q 010393 82 YERS 85 (512)
Q Consensus 82 ~Era 85 (512)
.++.
T Consensus 104 a~~~ 107 (357)
T COG4225 104 AIKL 107 (357)
T ss_pred HHHH
Confidence 8765
No 29
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=29.48 E-value=49 Score=34.26 Aligned_cols=86 Identities=19% Similarity=0.109 Sum_probs=50.2
Q ss_pred eEEEcCChhHHHHHHHHHH-HhhccceEeecCCCCCCCCCCCcccccCCCCCcccc--hhhHH-HHHHHHHHHhccCCCc
Q 010393 2 RYEVTGDQLHKTISMFFMD-IVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEES--CTTYN-MLKVSRHLFRWTKEIA 77 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd-~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ET--Cas~n-mlkl~~~Lf~~tgd~~ 77 (512)
.|+.|||++|++++....+ ++.+..--..||....+. .... |-+.- .+-+.-++...|||++
T Consensus 79 ~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~--------------~~~~~wiD~~~M~~p~l~~~~~~tgd~~ 144 (336)
T PF07470_consen 79 LYERTGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRP--------------YPNQVWIDGMYMNLPFLAWAGKLTGDPK 144 (336)
T ss_dssp HHHHH-THHHHHHHHHHHHHHHHTSCBECTGCBECTTT--------------STTEEETTHHHHHHHHHHHHHHHHTGHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCC--------------CCCceeeccccccHHHHHHHHHHHCCcH
Confidence 4789999999999999999 555443335666654111 1111 22211 1234445578899999
Q ss_pred hHHHHHHHHhccccccCCCCCCCcE
Q 010393 78 YADYYERSLTNGVLGIQRGTEPGVM 102 (512)
Q Consensus 78 YaD~~EralyN~vla~q~~~~~g~~ 102 (512)
|.|...+-+--..--..++ +.|.+
T Consensus 145 ~~~~a~~q~~~~~~~~~d~-~tGl~ 168 (336)
T PF07470_consen 145 YLDEAVRQFRLTRKYLYDP-ETGLY 168 (336)
T ss_dssp HHHHHHHHHHHHHHHHB-T-TTSSB
T ss_pred HHHHHHHHHHHHHHhccCC-CCCce
Confidence 9998876654444334444 44543
No 30
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=29.43 E-value=81 Score=33.53 Aligned_cols=89 Identities=17% Similarity=0.041 Sum_probs=53.7
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHH-HHHHHHHHhccCCCchHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNM-LKVSRHLFRWTKEIAYAD 80 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nm-lkl~~~Lf~~tgd~~YaD 80 (512)
+|+.|||++|++++..+-+.++.+--.. .+-+|+... .+ .+==|-+--| .-+.-++=+.+++++|+|
T Consensus 91 L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~-----eG~f~H~~~-~p------~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d 158 (357)
T COG4225 91 LYEQTGDPRYLEAAIKLASWLVHEPRTK-----EGGFQHKVK-YP------HQMWLDTLYMAGLFLAKYGQVTGRPEYFD 158 (357)
T ss_pred hhhhhCCHHHHHHHHHHHHHHhhCcccC-----CCccccccC-ch------hHhhhcchhhhhHHHHHHHHHhCCHHHHH
Confidence 5899999999999999999987433222 233333222 11 1111222111 112334556789999999
Q ss_pred HHHHHHhccccccCCCCCCCcEE
Q 010393 81 YYERSLTNGVLGIQRGTEPGVMI 103 (512)
Q Consensus 81 ~~EralyN~vla~q~~~~~g~~~ 103 (512)
.+=+..-=+.---++| ++|.|.
T Consensus 159 ~~~~QF~~~~~~l~Dp-~TGL~Y 180 (357)
T COG4225 159 EALYQFSLHEKYLRDP-ETGLYY 180 (357)
T ss_pred HHHHHHHHHHHHccCC-CcCceE
Confidence 9888777666666777 566543
No 31
>PHA02811 putative host range protein; Provisional
Probab=29.04 E-value=77 Score=30.80 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=29.2
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCcc--C-CCcEEEECCeecCCC
Q 010393 191 RVTLTFSSKGSGLTTSLNLRIPTWTS--S-NGAKATLNGQDLPLP 232 (512)
Q Consensus 191 ~V~ltv~~~~~~~~ftL~lRIP~Wa~--~-~~~~v~VNG~~~~~~ 232 (512)
.+.|.++.. +...|-+-|| |.|.. . ...++++||..+...
T Consensus 32 ~I~Lk~~~~-Kk~~~i~Il~-PdWseI~evKPI~m~~Ng~~vdv~ 74 (197)
T PHA02811 32 TINIKVNQQ-KKLDFIIILR-PDWTEVRNVKKINMVCNGVVIDTT 74 (197)
T ss_pred EEEEEeCCc-cEEEEEEEec-cchhhhhhccceEEEECCcEeEEE
Confidence 677777653 5667888889 99943 1 258899999988754
No 32
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=28.33 E-value=1.9e+02 Score=28.15 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=34.4
Q ss_pred eeEEEEeccCCc---cCCCcEEEECCeecCCCC-CCCEEEEE-----------eecCCCCEEEEEecceeE
Q 010393 204 TTSLNLRIPTWT---SSNGAKATLNGQDLPLPS-PGNFLSVT-----------KTWSSDDKLTIQLPLTLR 259 (512)
Q Consensus 204 ~ftL~lRIP~Wa---~~~~~~v~VNG~~~~~~~-~~gY~~I~-----------R~W~~GD~I~l~Lpm~lr 259 (512)
...|.++.|... .. +-.|.|||.-..... .++.+.+. ..|+.||.|-|+-+|++-
T Consensus 21 ~~~~~i~~~~~~~~l~~-g~SIAvnGvcLTV~~~~~~~f~~~l~~eTl~~T~l~~l~~G~~VNLEra~~~~ 90 (194)
T PRK09289 21 GLRLTIEAGKLLSDLKL-GDSIAVNGVCLTVTEIDGDSFTVDVSPETLRRTNLGDLKVGDRVNLERALRLG 90 (194)
T ss_pred cEEEEEEcCcccccccc-CCEEEEccEEEEEEEEcCCEEEEEEEHHHhhhCchhhccCCCEEEEeEcccCC
Confidence 345556666543 22 678999999776542 34444443 257888888777766653
No 33
>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that it is not directly involved in oxidative phosphorylation [, ].
Probab=28.03 E-value=3.8e+02 Score=24.59 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=37.1
Q ss_pred Cccccccccc--eecccCCCccCCeeEEEecCCCceeeccccc--ccccceEEEEee
Q 010393 458 TEAGFNNAAS--FVIEKGLSEYHPISFVAKGANRNFLLAPLLS--LRDESYTVYFDF 510 (512)
Q Consensus 458 ~~~~f~~~as--F~~~~gl~~~~~~Sf~a~g~~~~~ll~pl~~--~~~e~y~~yf~~ 510 (512)
...+|+..-+ +....-|+.|..|++.++|+.|.|.+.=--. .....|...|..
T Consensus 47 ~~~GFa~~r~~~~~~~~dls~y~~l~l~vrgdGr~Y~~~l~~~~~~~~~~y~~~f~t 103 (157)
T PF08547_consen 47 NNGGFASVRTPSFPSPLDLSGYDGLELRVRGDGRTYKVNLRTDNDEPSDSYQARFQT 103 (157)
T ss_pred CCCceEEEEEccCCCcCCCCCCcEEEEEEEcCCceEEEEEEeCCCCCCceEEEEEec
Confidence 3456766555 6778889999999999999999997642221 334466666654
No 34
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=27.98 E-value=1.8e+02 Score=28.60 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=36.3
Q ss_pred eeeEEEEeccCCc----cCCCcEEEECCeecCCCC-CCCEEEEE-----------eecCCCCEEEEEecceeE
Q 010393 203 LTTSLNLRIPTWT----SSNGAKATLNGQDLPLPS-PGNFLSVT-----------KTWSSDDKLTIQLPLTLR 259 (512)
Q Consensus 203 ~~ftL~lRIP~Wa----~~~~~~v~VNG~~~~~~~-~~gY~~I~-----------R~W~~GD~I~l~Lpm~lr 259 (512)
....|.++.|.+. .. +-.|.|||.-..... .++.+.++ ..|+.||.|-|+.+|++-
T Consensus 20 ~~~~l~i~~~~~~~~~l~~-G~SIAvnGvCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLEral~~g 91 (200)
T TIGR00187 20 LFISLVVNLADHMLDDLEL-GDSIAVNGVCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIERALKAD 91 (200)
T ss_pred CcEEEEEEeChHHhccccc-CCEEEECcEEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEcccCCCC
Confidence 3456677777332 22 678999999776542 45556665 378888888777766553
No 35
>PF03287 Pox_C7_F8A: Poxvirus C7/F8A protein; InterPro: IPR004967 This family includes Poxvirus C7 and F8A proteins.; GO: 0016032 viral reproduction
Probab=27.93 E-value=90 Score=29.27 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=28.8
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCcc---CCCcEEEECCeecCCC
Q 010393 191 RVTLTFSSKGSGLTTSLNLRIPTWTS---SNGAKATLNGQDLPLP 232 (512)
Q Consensus 191 ~V~ltv~~~~~~~~ftL~lRIP~Wa~---~~~~~v~VNG~~~~~~ 232 (512)
.+.|.++.. +.-.|-+-|| |.|.. -....+++||..+...
T Consensus 32 ~I~lk~~~~-K~i~f~~Il~-pdwseI~~vKpi~~~~Ng~~id~~ 74 (149)
T PF03287_consen 32 TIKLKSKET-KKINFIFILR-PDWSEIDEVKPIRMKLNGKSIDLE 74 (149)
T ss_pred EEEEEeCCc-cEEEEEEEEc-cChhhcccccceEEEECCeEeeEE
Confidence 666666653 5667888889 99954 1257899999987654
No 36
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=27.85 E-value=24 Score=36.62 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=56.0
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCC------CCcccchhhHHHHHHHHHHH--hcc
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLD------SNTEESCTTYNMLKVSRHLF--RWT 73 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~------~~~~ETCas~nmlkl~~~Lf--~~t 73 (512)
+|++|||+.|++.++...+.+.. +.+........|+|..+........ ....|-==.++++.|.-++- ...
T Consensus 151 l~~~~~~~~~~~~a~~l~~~~~~-~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~ 229 (346)
T PF07221_consen 151 LYEATGDPRYLDRAEELLDLFLD-RFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGR 229 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHC
T ss_pred HHHhccCHHHHHHHHHHHHHHHH-HHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhccc
Confidence 46889999999999999999874 5554333334677755443211000 01122222233444444433 334
Q ss_pred CCCchHHHHHHHHhccccc-cCCCCCCCcEEEeccC
Q 010393 74 KEIAYADYYERSLTNGVLG-IQRGTEPGVMIYLLPL 108 (512)
Q Consensus 74 gd~~YaD~~EralyN~vla-~q~~~~~g~~~Y~~pl 108 (512)
++..+.+..+ .|++..+. +.+. +.|.++|+...
T Consensus 230 ~~~~~~~~a~-~l~~~~~~~G~d~-~~gG~~~~~d~ 263 (346)
T PF07221_consen 230 GDPDWLERAR-RLFDFALEHGWDR-EGGGLFYSVDR 263 (346)
T ss_dssp T-HTHHHHHH-HHHHHHHHHHBST-TTSSB-SEEET
T ss_pred ccHHHHHHHH-HHHHHHHHheEec-CCCeEEEEEeC
Confidence 6777775554 35555555 5664 56666676443
No 37
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=26.18 E-value=23 Score=38.74 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=48.0
Q ss_pred eEEEc--CChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccch-hhHHHHHH-HHHHHhccCCCc
Q 010393 2 RYEVT--GDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESC-TTYNMLKV-SRHLFRWTKEIA 77 (512)
Q Consensus 2 ~Ye~T--GD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETC-as~nmlkl-~~~Lf~~tgd~~ 77 (512)
.|++| +|+.+++.|...-|.+...--..+|---..-.+..... . .....++| +....+.+ -.+|-++|||++
T Consensus 89 ay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~--~--~~~~~~~~la~~gs~~lEf~~LS~lTgd~k 164 (452)
T PF01532_consen 89 AYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGK--N--RWPGGESSLAEAGSLQLEFTRLSQLTGDPK 164 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEE--E--TTCCGEEEHHHHCSSHHHHHHHHHHHS-TH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCC--C--CCCCCcccccccccceechhHHHHHhhccH
Confidence 37788 99999999988888876433223332222212211111 0 12233455 32322222 245899999999
Q ss_pred hHHHHHHHHhccccccC
Q 010393 78 YADYYERSLTNGVLGIQ 94 (512)
Q Consensus 78 YaD~~EralyN~vla~q 94 (512)
|.|..+|+ ++.+...+
T Consensus 165 Y~~~a~~~-~~~l~~~~ 180 (452)
T PF01532_consen 165 YFDAADRI-YDALWRSQ 180 (452)
T ss_dssp HHHHHHHH-HHHHHCCC
T ss_pred HHHHHHHH-HHHHHHhh
Confidence 99999886 45555543
No 38
>PLN02345 endoglucanase
Probab=25.54 E-value=1.4e+02 Score=33.18 Aligned_cols=61 Identities=8% Similarity=0.048 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHHHH
Q 010393 10 LHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYE 83 (512)
Q Consensus 10 ~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~E 83 (512)
+++++|+..|+...+++.--.........| ++++--.=+++.-+-.||+.|||.+|.++++
T Consensus 168 ~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~-------------Y~s~~~~DEl~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 168 TLLKHAKQLFNFADKYRGSYSESIPEVQDY-------------YNSTGYGDELLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCCccCCC-------------CCCcccccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 568999999999887653211111111111 1222222567788889999999999999875
No 39
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=24.14 E-value=2.1e+02 Score=28.17 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=35.1
Q ss_pred eeEEEEeccCCc-cC--CCcEEEECCeecCCCC-CCCEEEEE-----------eecCCCCEEEEEecceeE
Q 010393 204 TTSLNLRIPTWT-SS--NGAKATLNGQDLPLPS-PGNFLSVT-----------KTWSSDDKLTIQLPLTLR 259 (512)
Q Consensus 204 ~ftL~lRIP~Wa-~~--~~~~v~VNG~~~~~~~-~~gY~~I~-----------R~W~~GD~I~l~Lpm~lr 259 (512)
...+.++.|.+. +. .+-.|.|||....... .++.+.++ ..|+.||.|-|+.+|++.
T Consensus 21 ~~~l~i~~~~~~~~~l~~g~SIavnGVcLTV~~v~~~~f~~~lipeTl~~T~l~~~~~G~~VNlEral~~~ 91 (206)
T PRK13020 21 LNTLEIAFPPELLEGLEIGASVAVNGVCLTVTKIEGDRVFFDVMEETLRLTNLADLRVGDRVNIERSAKFG 91 (206)
T ss_pred cEEEEEEeChhHhccCCCCCEEEECCEEEEEEEECCCEEEEEEhHHHHhhCchhhccCCCEEeeEecccCC
Confidence 345666677543 10 1578999999776542 34444443 267889988888777663
No 40
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=23.12 E-value=32 Score=38.52 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.2
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCC
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSV 35 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~ 35 (512)
+|++|||+.|++.+-..|+.+.+ +.-+.+|.++
T Consensus 433 lyR~TgD~~yre~gW~~f~ai~k-~~rt~~Gya~ 465 (522)
T PTZ00470 433 LYRLTGDPKYREWAWKIFQAIEK-HCKTENGYSG 465 (522)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH-HhcCCccccc
Confidence 58999999999999999998874 6666677665
No 41
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=22.82 E-value=2.7e+02 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=17.4
Q ss_pred eeeEEEEeccCCccCCCcEEEECCeecCCC
Q 010393 203 LTTSLNLRIPTWTSSNGAKATLNGQDLPLP 232 (512)
Q Consensus 203 ~~ftL~lRIP~Wa~~~~~~v~VNG~~~~~~ 232 (512)
.++.|.+--|+ ...|++||+++...
T Consensus 38 ~~~~i~iGna~-----~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 38 EPFRIRIGNAG-----AVEVTVNGKPVDLL 62 (77)
T ss_pred CCEEEEEeCCC-----cEEEEECCEECCCC
Confidence 44555554442 58999999999873
No 42
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.10 E-value=32 Score=38.31 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=43.1
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 81 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~ 81 (512)
+|++|||++|++.|++|-+.-.. .-++-||- | +. +.---..+-++-=.-+|++.+||..+.-.
T Consensus 190 Ly~~Tg~~rYL~LA~~Fi~~rg~-~P~~~rg~---e-------~~------~gHAvr~iyl~~G~A~l~~~~gDds~r~~ 252 (589)
T COG3533 190 LYRLTGDQRYLDLARRFIHQRGV-EPLAQRGD---E-------LE------GGHAVRQIYLYIGAADLAEETGDDSLRQA 252 (589)
T ss_pred HHHHhcChHHHHHHHHHHHHhcc-ChhhcCch---h-------hh------hhhHHHHHHHhhhHHHHHHHhCCHHHHHH
Confidence 68999999999999999876432 11222222 1 10 00000111122224578999999999988
Q ss_pred HHHHHhcc
Q 010393 82 YERSLTNG 89 (512)
Q Consensus 82 ~EralyN~ 89 (512)
+|+..=|-
T Consensus 253 ~~~lW~~~ 260 (589)
T COG3533 253 AEFLWQNV 260 (589)
T ss_pred HHHHHHHh
Confidence 88876554
No 43
>COG4485 Predicted membrane protein [Function unknown]
Probab=21.78 E-value=2.8e+02 Score=32.44 Aligned_cols=57 Identities=25% Similarity=0.467 Sum_probs=42.2
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCeecCCC-CCCCEEEEEeecCCCCEEEEEe
Q 010393 191 RVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLP-SPGNFLSVTKTWSSDDKLTIQL 254 (512)
Q Consensus 191 ~V~ltv~~~~~~~~ftL~lRIP~Wa~~~~~~v~VNG~~~~~~-~~~gY~~I~R~W~~GD~I~l~L 254 (512)
+|+++-..+ +.-.+.+-||- ++ |+..++||+.++.. +.+||..|+-. |...+|+|++
T Consensus 769 ~v~~ty~~~---~~g~I~ltipY--dK-Gwsa~~dgK~lkV~kAq~gf~~vk~p-Kg~~~IeLtf 826 (858)
T COG4485 769 GVTITYNKK---SDGYIFLTIPY--DK-GWSAKSDGKKLKVKKAQGGFMGVKAP-KGKGRIELTF 826 (858)
T ss_pred eEEEEEccC---CCceEEEeccc--CC-CcceeeCCeeeeeeecccceEEEEec-CCCceEEEEE
Confidence 455555432 33467888885 33 79999999999876 47899999976 6777898887
No 44
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=21.64 E-value=5e+02 Score=25.22 Aligned_cols=58 Identities=16% Similarity=0.330 Sum_probs=38.6
Q ss_pred CeeeEEEEeccCCccC---CCcEEEECCeecCCC-CCCCEEEEE-----------eecCCCCEEEEEecceeE
Q 010393 202 GLTTSLNLRIPTWTSS---NGAKATLNGQDLPLP-SPGNFLSVT-----------KTWSSDDKLTIQLPLTLR 259 (512)
Q Consensus 202 ~~~ftL~lRIP~Wa~~---~~~~v~VNG~~~~~~-~~~gY~~I~-----------R~W~~GD~I~l~Lpm~lr 259 (512)
+....+.+++|..... .+-.|.|||...... ..++.+.+. ..|+.||.|-|+.++--|
T Consensus 115 ~~~~~~~i~~~~~~~~~l~~kgSIavdGvsLTV~~~~~~~f~v~lipeTl~~T~l~~~k~G~~VNlE~D~~~k 187 (194)
T PRK09289 115 GNSVEFRFKAPAELAKYIVEKGSIAVDGVSLTVNEVDGDRFSVNLIPHTLENTTLGEKKVGDRVNLEIDLLAK 187 (194)
T ss_pred CCcEEEEEECChHHhcccccCCEEEEccEEEEEEEEcCCEEEEEEeHHHHhhCccccCCCCCEEEEeEehHHH
Confidence 3456788899865321 156788999876543 244555555 478899999888876443
No 45
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=21.42 E-value=52 Score=34.15 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHHHhccCCCchHHHHHHHHhccccccCCCCCCCcEEEeccCCC
Q 010393 56 SCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAP 110 (512)
Q Consensus 56 TCas~nmlkl~~~Lf~~tgd~~YaD~~EralyN~vla~q~~~~~g~~~Y~~pl~~ 110 (512)
.=+|+.-|++.-++++.++|.+|-+-.+|.+ +-||.+|.| .+|..+|+ |+..
T Consensus 38 N~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl-~ylL~aQyp-nGGWPQ~y-P~~~ 89 (289)
T PF09492_consen 38 NDATTTEIRFLARVYQATKDPRYREAFLKGL-DYLLKAQYP-NGGWPQFY-PLRG 89 (289)
T ss_dssp GGTTHHHHHHHHHHHHHCG-HHHHHHHHHHH-HHHHHHS-T-TS--BSEC-S--S
T ss_pred ChhHHHHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHhhCC-CCCCCccC-CCCC
Confidence 3456777888889999999999999999986 889999997 56665644 6643
No 46
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=21.41 E-value=4.9e+02 Score=21.78 Aligned_cols=43 Identities=9% Similarity=0.110 Sum_probs=32.0
Q ss_pred CCCCceEEEeeccCCCCCeEEEeecCCcceEEEEe-eccCCCCcEEEE
Q 010393 406 AQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTA-VNLQSSESTKLG 452 (512)
Q Consensus 406 ~~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~-~~~~~g~~~~l~ 452 (512)
.....+|+|+| .| +|++.|.+. ..|..|-.. .+...|+.|.+-
T Consensus 48 ~~~~Q~W~i~~--~~-~g~y~I~n~-~s~~~Ldv~~~~~~~g~~v~~~ 91 (105)
T PF14200_consen 48 GNDNQQWKIEP--VG-DGYYRIRNK-NSGKVLDVAGGSTANGTNVQQW 91 (105)
T ss_dssp SSGGGEEEEEE--ST-TSEEEEEET-STTEEEEEGGGSSSTTEBEEEE
T ss_pred CCcCcEEEEEE--ec-CCeEEEEEC-CCCcEEEECCCCCCCCCEEEEE
Confidence 46789999998 45 589999999 668888653 344467778774
No 47
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=21.40 E-value=1.7e+02 Score=26.56 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=22.0
Q ss_pred EEEEeccCCccCCCcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecce
Q 010393 206 SLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLT 257 (512)
Q Consensus 206 tL~lRIP~Wa~~~~~~v~VNG~~~~~~~~~gY~~I~R~W~~GD~I~l~Lpm~ 257 (512)
+...=||.|+. ++||..|+|+ .|+..|.-+..
T Consensus 20 ~~~~~ip~wa~-----------------~~~F~sIt~t---~eelsivc~~~ 51 (128)
T COG3603 20 DAGSAIPAWAD-----------------GPGFWSITRT---PEELSIVCLAD 51 (128)
T ss_pred ccCCcCccccC-----------------CCceEEEEcC---CceEEEEeecc
Confidence 34456899987 5789999875 57666655444
No 48
>smart00725 NEAT NEAr Transporter domain.
Probab=21.08 E-value=3.5e+02 Score=24.20 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=37.1
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecc
Q 010393 191 RVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPL 256 (512)
Q Consensus 191 ~V~ltv~~~~~~~~ftL~lRIP~Wa~~~~~~v~VNG~~~~~~~~~gY~~I~R~W~~GD~I~l~Lpm 256 (512)
..+++|.. ...-++|.|.==+|.+ .+++.+||+.+... .|+.. +++|+..|+||.
T Consensus 29 pa~l~v~n--Gk~~v~ltl~~s~~~~--~f~i~~~G~~~~~~------vvs~d-~~~~tr~v~F~v 83 (123)
T smart00725 29 PAKLIVKN--GKTYVTLTLNNSSFWK--DFEVEVNGTKVDVE------VVSKD-KDNDTRTIRFPV 83 (123)
T ss_pred ceEEEEEC--CEEEEEEEEcCCccEE--EEEEEeCCEEeeeE------EEeec-CCCCEEEEEEEe
Confidence 35666653 2455677777778998 69999999965432 23332 568888888876
No 49
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=20.60 E-value=1.3e+02 Score=26.77 Aligned_cols=19 Identities=11% Similarity=0.422 Sum_probs=16.8
Q ss_pred EEEEEeecCCCCEEEEEec
Q 010393 237 FLSVTKTWSSDDKLTIQLP 255 (512)
Q Consensus 237 Y~~I~R~W~~GD~I~l~Lp 255 (512)
.+.|.++|+.|.+|+++-.
T Consensus 55 C~~~p~~W~pg~tv~V~W~ 73 (118)
T PF11745_consen 55 CVSLPRKWRPGLTVKVEWE 73 (118)
T ss_pred EEEcCCCCCCCCEEEEEEe
Confidence 7888999999999988766
Done!