Query 010393
Match_columns 512
No_of_seqs 222 out of 793
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kmv_A Alpha-L-arabinofuranosi 99.9 1.4E-22 4.7E-27 187.1 10.6 115 374-497 8-123 (157)
2 1wd3_A Alpha-L-arabinofuranosi 99.9 3E-23 1E-27 216.9 2.2 154 338-508 295-453 (482)
3 3kmv_A Alpha-L-arabinofuranosi 99.8 1.7E-18 5.7E-23 159.8 11.4 126 328-477 22-150 (157)
4 3akh_A Putative secreted alpha 99.4 3.5E-13 1.2E-17 144.3 11.1 126 366-501 312-438 (468)
5 1wd3_A Alpha-L-arabinofuranosi 99.3 2.5E-12 8.4E-17 135.0 10.9 149 307-475 324-481 (482)
6 3akh_A Putative secreted alpha 99.3 8.9E-12 3E-16 133.4 12.4 135 315-475 322-459 (468)
7 3k7x_A LIN0763 protein; Q92DQ0 89.0 0.13 4.5E-06 52.6 1.8 79 2-92 104-184 (349)
8 2gz6_A N-acetyl-D-glucosamine 88.6 0.29 9.9E-06 49.8 4.0 102 3-109 251-356 (388)
9 2gz6_A N-acetyl-D-glucosamine 86.6 0.34 1.2E-05 49.2 3.2 102 2-105 184-285 (388)
10 1nc5_A Hypothetical protein YT 85.0 0.61 2.1E-05 47.8 4.1 88 2-102 99-187 (373)
11 1fp3_A N-acyl-D-glucosamine 2- 84.9 0.42 1.4E-05 49.0 2.9 102 3-108 260-365 (402)
12 2yug_A Protein FRG1; spliceoso 81.1 22 0.00076 31.9 12.4 92 325-440 34-127 (155)
13 3gt5_A N-acetylglucosamine 2-e 74.7 1.8 6.2E-05 44.6 3.6 103 2-106 185-296 (402)
14 3k7x_A LIN0763 protein; Q92DQ0 72.3 1.7 5.7E-05 44.4 2.6 77 2-86 162-242 (349)
15 3pmm_A Putative cytoplasmic pr 67.8 3.3 0.00011 42.7 3.6 90 2-102 122-214 (382)
16 3pmm_A Putative cytoplasmic pr 62.7 4.1 0.00014 42.0 3.2 65 2-92 80-144 (382)
17 3gt5_A N-acetylglucosamine 2-e 61.5 2.8 9.6E-05 43.1 1.7 96 3-108 261-361 (402)
18 2zbl_A Putative isomerase; N-a 61.4 6 0.00021 40.9 4.2 99 3-109 260-368 (421)
19 2w87_A Esterase D, XYL-CBM35; 60.6 31 0.0011 30.0 8.2 38 191-229 40-78 (139)
20 1nc5_A Hypothetical protein YT 58.9 3.9 0.00013 41.8 2.2 69 2-92 53-121 (373)
21 2zzr_A Unsaturated glucuronyl 55.1 15 0.0005 38.2 5.8 78 2-88 258-341 (397)
22 2w3j_A Carbohydrate binding mo 52.9 57 0.0019 28.5 8.6 38 191-229 40-78 (145)
23 2ila_A Interleukin-1 alpha; cy 48.8 11 0.00036 34.3 3.1 26 423-452 114-139 (155)
24 3llp_A Fascin; beta-trefoil, a 48.2 2.4E+02 0.0081 30.0 13.9 51 384-440 226-276 (493)
25 2wry_A IL-1 beta, interleukin- 48.2 13 0.00045 33.9 3.6 36 412-452 111-146 (162)
26 2nvh_A IL-1 beta, interleukin- 46.4 9.1 0.00031 34.6 2.2 28 423-452 108-135 (153)
27 2ahf_A Unsaturated glucuronyl 46.3 15 0.00051 37.8 4.1 78 2-88 233-316 (377)
28 1md6_A Interleukin 1 family, m 45.1 9.1 0.00031 34.7 2.0 27 424-452 107-133 (154)
29 1ilt_A Interleukin-1 receptor 40.7 11 0.00036 34.2 1.7 27 424-452 108-134 (152)
30 2w47_A Lipolytic enzyme, G-D-S 35.7 1.3E+02 0.0046 25.8 8.2 38 191-229 41-79 (144)
31 3ltq_A Interleukin-1 beta; lan 33.7 19 0.00064 33.2 2.2 28 423-452 126-153 (171)
32 3k11_A Putative glycosyl hydro 30.5 9.9 0.00034 40.1 -0.2 92 2-104 94-191 (445)
33 2kll_A Interleukin-33; beta-tr 30.5 2.8E+02 0.0096 24.4 16.4 114 310-440 19-134 (161)
34 2zbl_A Putative isomerase; N-a 29.2 46 0.0016 34.1 4.6 75 3-88 123-203 (421)
35 1dm9_A Hypothetical 15.5 KD pr 27.8 74 0.0025 27.6 5.0 34 220-262 34-67 (133)
36 4f9p_D 103.2 anti-BTN3A1 antib 26.8 1.2E+02 0.0042 29.4 6.8 110 391-511 104-226 (254)
37 2x2s_A Agglutinin, agglutinin 26.4 1.2E+02 0.0041 27.1 6.1 45 407-452 92-138 (153)
38 1x9d_A Endoplasmic reticulum m 25.6 32 0.0011 37.2 2.7 88 3-94 182-271 (538)
39 1jlx_A Agglutinin, amaranthin, 24.7 71 0.0024 31.9 4.7 32 406-439 91-123 (303)
40 3gzk_A Cellulase; fold from GH 24.4 1.4E+02 0.0047 32.1 7.4 65 9-85 268-332 (537)
41 4aw7_A GH86A beta-porphyranase 23.7 1.7E+02 0.0057 31.9 7.8 39 192-232 491-533 (591)
42 2gjh_A Designed protein; oblig 23.3 20 0.00069 26.4 0.3 19 234-253 29-47 (62)
43 1x9d_A Endoplasmic reticulum m 22.4 21 0.0007 38.7 0.4 34 2-35 446-479 (538)
44 1ia6_A Cellulase CEL9M; cellul 22.3 1.4E+02 0.0047 31.1 6.7 59 9-85 178-236 (441)
45 3ddy_A Lumazine protein, LUMP; 22.3 1.7E+02 0.0058 27.0 6.6 55 203-258 20-89 (186)
46 2k6p_A Uncharacterized protein 22.0 69 0.0023 25.5 3.4 33 221-262 27-59 (92)
47 1i8d_A Riboflavin synthase; ri 21.9 1.6E+02 0.0056 27.8 6.5 56 203-258 20-90 (213)
48 2vzp_A Aocbm35, EXO-beta-D-glu 21.8 3.4E+02 0.012 22.4 8.9 38 191-229 40-78 (127)
49 1clc_A Endoglucanase CELD; EC: 20.1 1.5E+02 0.0052 32.5 6.7 66 9-86 312-377 (639)
50 1nxc_A Mannosyl-oligosaccharid 20.1 49 0.0017 35.2 2.7 89 3-94 118-209 (478)
No 1
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum}
Probab=99.87 E-value=1.4e-22 Score=187.08 Aligned_cols=115 Identities=21% Similarity=0.300 Sum_probs=102.0
Q ss_pred CceeeecCCCCCCceEEeecCCceeEEeccCCCCCCceEEEeeccCCCC-CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 010393 374 GKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGD-RTVSLESETYKGCFVYTAVNLQSSESTKLG 452 (512)
Q Consensus 374 g~~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~-g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 452 (512)
++.|+||++++|++||||.++.++| +.++...+|++|++||||++.+ |+|||||+++||+|||+ .|..|+|+
T Consensus 8 ~~~vsl~S~n~p~~ylRh~~~~~~~--~~~~~~~~datF~vvpGLa~~~~g~VSfES~n~Pg~yLRh-----~~~~l~L~ 80 (157)
T 3kmv_A 8 ITKAKFQSYNYPNMYIRHANFDARI--DENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRH-----SNYDLSLE 80 (157)
T ss_dssp --CBEEEESSSTTCEEEEETTEEEE--ESSCSSGGGGCEEEEECSSCCSTTEEEEEESSSTTEEEEE-----ETTEEEEE
T ss_pred CccEEEEecCCCCcEEEEeCCeEEE--ccCCCCccCceEEEeCCcCCCCCCEEEEEECCCCCcEEEE-----eCCEEEEe
Confidence 4578999999999999999997666 6667788999999999998865 89999999999999999 48999999
Q ss_pred eecCCCccccccccceecccCCCccCCeeEEEecCCCceeecccc
Q 010393 453 CISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLL 497 (512)
Q Consensus 453 ~~~~~~~~~f~~~asF~~~~gl~~~~~~Sf~a~g~~~~~ll~pl~ 497 (512)
+. ++++.|+++|+|+.++||++...+||++...++.||..=-+
T Consensus 81 ~~--~~s~~f~~dATF~~~~GLa~~~~vSfeS~n~Pg~yLrh~~~ 123 (157)
T 3kmv_A 81 KN--DGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNY 123 (157)
T ss_dssp EC--CSCHHHHHTTCEEEEECSSCTTSEEEEESSSTTEEEEEETT
T ss_pred cc--CCCCCccCCceEEEccCccCCCcEEEEEEcCCCeEEEEECC
Confidence 74 77788999999999999999999999999999999987333
No 2
>1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil, hydrolase; HET: NAG; 1.75A {Aspergillus kawachii} SCOP: b.29.1.21 b.42.8.1 PDB: 1wd4_A* 2d44_A* 2d43_A*
Probab=99.86 E-value=3e-23 Score=216.91 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=127.7
Q ss_pred EeecCCCCCccccceEEEEEecCCCCCccccccCCCCceeeecCCC--CCCceEEeecCCceeEEecc---CCCCCCceE
Q 010393 338 MEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFD--SPGMLVIQHETDDELVVTDS---FIAQGSSVF 412 (512)
Q Consensus 338 ~~~~p~~g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~l~p~~--~p~~~v~~~~~~~~l~v~~~---~~~~~~s~f 412 (512)
....|..+||.++||+||.+ ....++....|.-..+..|+||+.+ +|++||||.+..++|.++.+ .....|++|
T Consensus 295 t~~~Psd~Td~aVqAnivAa-~y~~~s~~s~pgLa~g~~VSLrs~s~n~PgrYLRH~~~~vrL~~V~s~sSa~~k~DATF 373 (482)
T 1wd3_A 295 TSGYPSDDTENSVQENIVAA-KYVVGSLVSGPSFTSGEVVSLRVTTPGYTTRYIAHTDTTVNTQVVDDDSSTTLKEEASW 373 (482)
T ss_dssp ESSCCCHHHHHHHHHHHHHH-CEEECCCCCSSCCCTTCEEEEEECSTTCTTEEEEEETTEEEEEECCTTSCHHHHHHTCE
T ss_pred eecCCChHHHHHHhhceeee-eccCCccccCCccccCceEEEEECcCCCCCeEEEEcCCcEEEEecccCCCcccccceeE
Confidence 34568889999999999955 2222224456666789999999888 99999999999777755322 224578999
Q ss_pred EEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEEeecCCCccccccccceecccCCCccCCeeEEEecCCCcee
Q 010393 413 HLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFL 492 (512)
Q Consensus 413 ~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~l~~~~~~~~~~f~~~asF~~~~gl~~~~~~Sf~a~g~~~~~l 492 (512)
++||||++ +++|||||+++||+|||| ++.+|+|+ +. ++++.|+++|||++++||++++ +||++.+
T Consensus 374 ~VVpGLAd-~g~VSFES~n~PG~YLRH-----~n~~LrL~-~~-DgS~~FrqDATF~~~~GL~~~g-vSFeS~n------ 438 (482)
T 1wd3_A 374 TVVTGLAN-SQCFSFESVDTPGSYIRH-----YNFELLLN-AN-DGTKQFHEDATFCPQAALNGEG-TSLRSWS------ 438 (482)
T ss_dssp EEEECSSC-TTSEEEEESSSTTEEEEE-----ETTEEEEE-EC-CCCHHHHHHTCEEEEECTTSSS-EEEEESS------
T ss_pred EEeccccC-CCeEEEEecCCCCceEEE-----eCCEEEEe-cC-CCCcccccCceeEeccCCCCCc-eeEEEEC------
Confidence 99999998 799999999999999999 48899999 43 7778899999999999999988 9999998
Q ss_pred ecccccccccceEEEE
Q 010393 493 LAPLLSLRDESYTVYF 508 (512)
Q Consensus 493 l~pl~~~~~e~y~~yf 508 (512)
.|..-||++.|++|-
T Consensus 439 -~PgrYLRH~n~~Lyl 453 (482)
T 1wd3_A 439 -YPTRYFRHYENVLYA 453 (482)
T ss_dssp -STTCEEEEETTEEEE
T ss_pred -CCCcEEEEeCCEEEE
Confidence 677778899999986
No 3
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum}
Probab=99.76 E-value=1.7e-18 Score=159.83 Aligned_cols=126 Identities=15% Similarity=0.204 Sum_probs=95.5
Q ss_pred EEecCCcceEEeecCCCCCccccceEEEEEecCCCCCccccccCCCCceeeecCCCCCCceEEeecCCceeEEeccCCC-
Q 010393 328 VLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIA- 406 (512)
Q Consensus 328 ~~~~~~~~l~~~~~p~~g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~~- 406 (512)
.+.+.+..+.+.. +....-.|+||++.+-.++ .+-.|+||+.++||+||||.+++++| +.+..+
T Consensus 22 ylRh~~~~~~~~~----~~~~~~datF~vvpGLa~~---------~~g~VSfES~n~Pg~yLRh~~~~l~L--~~~~~s~ 86 (157)
T 3kmv_A 22 YIRHANFDARIDE----NVTPEMDSQWELVPGLANS---------GDGYVSIQSVNYPGYYLRHSNYDLSL--EKNDGTS 86 (157)
T ss_dssp EEEEETTEEEEES----SCSSGGGGCEEEEECSSCC---------STTEEEEEESSSTTEEEEEETTEEEE--EECCSCH
T ss_pred EEEEeCCeEEEcc----CCCCccCceEEEeCCcCCC---------CCCEEEEEECCCCCcEEEEeCCEEEE--eccCCCC
Confidence 3455566666654 3445778999999552222 11378999999999999999996666 443322
Q ss_pred --CCCceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEEeecCCCccccccccceecccCCCcc
Q 010393 407 --QGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEY 477 (512)
Q Consensus 407 --~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~l~~~~~~~~~~f~~~asF~~~~gl~~~ 477 (512)
..|++|++||||++ +|.|||||.++||||||+ .|..++|+|. +++.|+++|+|+..+|.-+-
T Consensus 87 ~f~~dATF~~~~GLa~-~~~vSfeS~n~Pg~yLrh-----~~~~l~l~~~---~t~~fr~dATF~~~~~~~~~ 150 (157)
T 3kmv_A 87 LFAESATFKIVPGLAD-PSYISFQSYNFPTRYIRH-----YNYLLRLDEI---VTELDRQDATFKIISEDTQL 150 (157)
T ss_dssp HHHHTTCEEEEECSSC-TTSEEEEESSSTTEEEEE-----ETTEEEEEEC---CSHHHHHHTCEEEEC-----
T ss_pred CccCCceEEEccCccC-CCcEEEEEEcCCCeEEEE-----ECCEEEEecC---CCchhccCCeEEEecCcchh
Confidence 57899999999999 799999999999999999 4889999973 67889999999999997653
No 4
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A*
Probab=99.42 E-value=3.5e-13 Score=144.34 Aligned_cols=126 Identities=22% Similarity=0.278 Sum_probs=106.7
Q ss_pred cccccCCCCceeeecCCCCCCceEEeecCCceeEEeccCCCCCCceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCC
Q 010393 366 FSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQS 445 (512)
Q Consensus 366 ~~~p~~~~g~~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~ 445 (512)
+..|..++.+.+++++.+.|+.||||.+. .|+|+.+.....+++|++||||++ +++|||||+++||.|||+.
T Consensus 312 ~~~~~~~g~~~~s~~s~~~pg~ylrh~~~--~v~l~~~~~~~~d~tf~~~~gl~~-~~~~s~~s~~ypg~~lr~~----- 383 (468)
T 3akh_A 312 FGIPVADGVTPVRFSSYNYPDRYIRHWDF--RARIEANVTNLADSQFRVVTGLAG-SGTISLESANYPGYYLRHK----- 383 (468)
T ss_dssp CCCCCCSEECCBCEEESSSTTCEEEEETT--EEEEESSCSSGGGGCEEEEECTTC-TTCEEEEESSSTTEEEEEE-----
T ss_pred eccccccCccccccccccccccEEEEecC--cEEEccCCCCcccceEEEccCCCC-CceEEEEEEeCCCeEEEEE-----
Confidence 44555556667799999999999999987 566676666678999999999987 6999999999999999994
Q ss_pred CCcEEEEeecCCCccccccccceecccCCCcc-CCeeEEEecCCCceeecccccccc
Q 010393 446 SESTKLGCISESTEAGFNNAASFVIEKGLSEY-HPISFVAKGANRNFLLAPLLSLRD 501 (512)
Q Consensus 446 g~~~~l~~~~~~~~~~f~~~asF~~~~gl~~~-~~~Sf~a~g~~~~~ll~pl~~~~~ 501 (512)
+..|+|+ +. ++++.|.++|+|++++||++- ..+||++...+..||.+==++||=
T Consensus 384 ~~~~~~~-~~-~~~~~~~~~atf~~~~g~~~~~~~~s~~s~~~p~~~lr~~~~~l~~ 438 (468)
T 3akh_A 384 NYEVWVE-KN-DGSSAFKNDASFSRRAGLADSADGIAFESYNYPGRYLRHYENLLRI 438 (468)
T ss_dssp TTEEEEE-EC-CSCHHHHHHTCEEEEECSSCTTTCEEEEESSSTTEEEEEETTEEEE
T ss_pred CCEEEEe-cC-CCCccccCCCcEEEecCcCCCcCcEEEEeecCCceEEEEeCCeEEE
Confidence 7799999 33 677889999999999999997 899999999999999865555543
No 5
>1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil, hydrolase; HET: NAG; 1.75A {Aspergillus kawachii} SCOP: b.29.1.21 b.42.8.1 PDB: 1wd4_A* 2d44_A* 2d43_A*
Probab=99.34 E-value=2.5e-12 Score=134.96 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=109.3
Q ss_pred ccCCCCCceeeeeeec-CCeeEEEecCCcceEEeecCCC-CCccccceEEEEEecCCCCCccccccCCCCceeeecCCCC
Q 010393 307 IPASYNSQLITFTQEY-GNTKFVLTNSNQSITMEKFPKS-GTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDS 384 (512)
Q Consensus 307 ~~~~~~~~~~~~~~~~-g~~~f~~~~~~~~l~~~~~p~~-g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~l~p~~~ 384 (512)
.|.+.....++|+-.. +.+.+.|.+.+..+.++..... .+...-+|+|+++.+-.+ ...|+||+.+.
T Consensus 324 ~pgLa~g~~VSLrs~s~n~PgrYLRH~~~~vrL~~V~s~sSa~~k~DATF~VVpGLAd-----------~g~VSFES~n~ 392 (482)
T 1wd3_A 324 GPSFTSGEVVSLRVTTPGYTTRYIAHTDTTVNTQVVDDDSSTTLKEEASWTVVTGLAN-----------SQCFSFESVDT 392 (482)
T ss_dssp SSCCCTTCEEEEEECSTTCTTEEEEEETTEEEEEECCTTSCHHHHHHTCEEEEECSSC-----------TTSEEEEESSS
T ss_pred CCccccCceEEEEECcCCCCCeEEEEcCCcEEEEecccCCCcccccceeEEEeccccC-----------CCeEEEEecCC
Confidence 3444446677886554 3344566788888887763322 334466899999864111 23689999999
Q ss_pred CCceEEeecCCceeEEeccCC---CCCCceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEEee----cCC
Q 010393 385 PGMLVIQHETDDELVVTDSFI---AQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCI----SES 457 (512)
Q Consensus 385 p~~~v~~~~~~~~l~v~~~~~---~~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~l~~~----~~~ 457 (512)
|+.||||.++ +|+|+++.. -..|+.|++++||.+ .| |||||.++||.||||. +..|+|.-. ..+
T Consensus 393 PG~YLRH~n~--~LrL~~~DgS~~FrqDATF~~~~GL~~-~g-vSFeS~n~PgrYLRH~-----n~~Lyla~~gg~~~~d 463 (482)
T 1wd3_A 393 PGSYIRHYNF--ELLLNANDGTKQFHEDATFCPQAALNG-EG-TSLRSWSYPTRYFRHY-----ENVLYAASNGGVQTFD 463 (482)
T ss_dssp TTEEEEEETT--EEEEEECCCCHHHHHHTCEEEEECTTS-SS-EEEEESSSTTCEEEEE-----TTEEEEECSSCSSGGG
T ss_pred CCceEEEeCC--EEEEecCCCCcccccCceeEeccCCCC-Cc-eeEEEECCCCcEEEEe-----CCEEEEecCCCccccc
Confidence 9999999998 555554432 236899999999988 56 9999999999999994 789999521 124
Q ss_pred CccccccccceecccCCC
Q 010393 458 TEAGFNNAASFVIEKGLS 475 (512)
Q Consensus 458 ~~~~f~~~asF~~~~gl~ 475 (512)
+++.|++++||+...|++
T Consensus 464 ~t~~f~~DaTF~v~~pwA 481 (482)
T 1wd3_A 464 SKTSFNNDVSFEIETAFA 481 (482)
T ss_dssp CSTTHHHHTCEEEEECTT
T ss_pred CcccccCCceEEeccCCC
Confidence 567799999999999886
No 6
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A*
Probab=99.30 E-value=8.9e-12 Score=133.41 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=97.5
Q ss_pred eeeeeeecCCeeEEEecCCcceEEeecCCCCCccccceEEEEEecCCCCCccccccCCCCceeeecCCCCCCceEEeecC
Q 010393 315 LITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHET 394 (512)
Q Consensus 315 ~~~~~~~~g~~~f~~~~~~~~l~~~~~p~~g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~l~p~~~p~~~v~~~~~ 394 (512)
+++|+...-...|. .+.+..|.++.- ++ ...+++||++.+-. +...++|++.++||.|+||.+.
T Consensus 322 ~~s~~s~~~pg~yl-rh~~~~v~l~~~---~~-~~~d~tf~~~~gl~-----------~~~~~s~~s~~ypg~~lr~~~~ 385 (468)
T 3akh_A 322 PVRFSSYNYPDRYI-RHWDFRARIEAN---VT-NLADSQFRVVTGLA-----------GSGTISLESANYPGYYLRHKNY 385 (468)
T ss_dssp CBCEEESSSTTCEE-EEETTEEEEESS---CS-SGGGGCEEEEECTT-----------CTTCEEEEESSSTTEEEEEETT
T ss_pred ccccccccccccEE-EEecCcEEEccC---CC-CcccceEEEccCCC-----------CCceEEEEEEeCCCeEEEEECC
Confidence 33444333233454 467778888752 22 36899999884311 1234799999999999999998
Q ss_pred CceeEEeccCC---CCCCceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEEeecCCCccccccccceecc
Q 010393 395 DDELVVTDSFI---AQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIE 471 (512)
Q Consensus 395 ~~~l~v~~~~~---~~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~l~~~~~~~~~~f~~~asF~~~ 471 (512)
.++| ++... -..|+.|++||||++..+.|||||+++||.|||+. +..|+|+ + .+++.|.++|+|+..
T Consensus 386 ~~~~--~~~~~~~~~~~~atf~~~~g~~~~~~~~s~~s~~~p~~~lr~~-----~~~l~~~-~--~~~~~~~~~atf~~~ 455 (468)
T 3akh_A 386 EVWV--EKNDGSSAFKNDASFSRRAGLADSADGIAFESYNYPGRYLRHY-----ENLLRIQ-P--VSTALDRQDATFYAE 455 (468)
T ss_dssp EEEE--EECCSCHHHHHHTCEEEEECSSCTTTCEEEEESSSTTEEEEEE-----TTEEEEE-E--CCSHHHHHHTCEEEC
T ss_pred EEEE--ecCCCCccccCCCcEEEecCcCCCcCcEEEEeecCCceEEEEe-----CCeEEEc-c--CCCchhcccceeeec
Confidence 5555 53322 23689999999998844899999999999999995 7789998 4 346779999999999
Q ss_pred cCCC
Q 010393 472 KGLS 475 (512)
Q Consensus 472 ~gl~ 475 (512)
+++.
T Consensus 456 ~~~~ 459 (468)
T 3akh_A 456 KLAA 459 (468)
T ss_dssp C---
T ss_pred cchh
Confidence 8864
No 7
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=89.01 E-value=0.13 Score=52.65 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=54.7
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceE--eecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTY--ATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYA 79 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y--~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~Ya 79 (512)
.||+|||++|++.|+..++.+...+-- ..||+ .|..+. ..+--+|+.--++.+.-+|++.|+|.+|.
T Consensus 104 aye~t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi----~W~~~~-------~~~knaisN~~~~~~la~l~~~tgd~~Yl 172 (349)
T 3k7x_A 104 LYKATGKSIYLEDAQLVWQDLVDTGWNDIMGGGF----AWRRPQ-------MYYKNTPVNAPFIILSCWLYNELNETKYL 172 (349)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHTBCSGGGSCB----EEETTE-------EEEEEHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHCCchHHHHHHHHHHHHHHhCCCCCCCCce----EecCCC-------ccccchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 489999999999999999988322222 23555 343321 12334566666778889999999999999
Q ss_pred HHHHHHHhccccc
Q 010393 80 DYYERSLTNGVLG 92 (512)
Q Consensus 80 D~~EralyN~vla 92 (512)
|..|+++ +-+..
T Consensus 173 ~~A~~~~-~w~~~ 184 (349)
T 3k7x_A 173 EWAMKTY-EWQTK 184 (349)
T ss_dssp HHHHHHH-HHHHH
T ss_pred HHHHHHH-HHHHh
Confidence 9998764 34433
No 8
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=88.58 E-value=0.29 Score=49.76 Aligned_cols=102 Identities=11% Similarity=-0.095 Sum_probs=60.9
Q ss_pred EEEcCChhHHHHHHHHHHHhhccceEe-ecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHH
Q 010393 3 YEVTGDQLHKTISMFFMDIVNSSHTYA-TGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 81 (512)
Q Consensus 3 Ye~TGD~~y~~aa~~fwd~V~~~h~y~-tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~ 81 (512)
+++|||+.|+++|+..++.+.++-.-. +||.-..-.+. ......+.....-.+...+++.-.-.|++.|||.+|.+.
T Consensus 251 ~~~tgd~~~~~~A~~~~~~~~~~g~d~~~Gg~~~~~~~~--g~~~~~~~~~~~~~W~qae~i~a~~~ly~~tgd~~yl~~ 328 (388)
T 2gz6_A 251 ARRKNDSKTINQAVDVVLNILNFAWDNEYGGLYYFMDAA--GHPPQQLEWDQKLWWVHLESLVALAMGYRLTGRDACWAW 328 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHBCTTTCSBCSCEETT--SCCCSCTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCC--CCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 567999999999988888775422112 24443111110 000000111333456667888888899999999999999
Q ss_pred HHHHH---hccccccCCCCCCCcEEEeccCC
Q 010393 82 YERSL---TNGVLGIQRGTEPGVMIYLLPLA 109 (512)
Q Consensus 82 ~Eral---yN~vla~q~~~~~g~~~Y~~pl~ 109 (512)
++++. +++++ ++..++.+.+.++-+
T Consensus 329 a~~~~~~~~~~~~---D~~~G~w~~~l~~~g 356 (388)
T 2gz6_A 329 YQKMHDYSWQHFA---DPEYGEWFGYLNRRG 356 (388)
T ss_dssp HHHHHHHHHHHHB---CTTTSSBCCEECTTS
T ss_pred HHHHHHHHHHhCc---CCCCCceEEeeCCCc
Confidence 88854 33433 343455666766543
No 9
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=86.60 E-value=0.34 Score=49.23 Aligned_cols=102 Identities=7% Similarity=-0.097 Sum_probs=61.4
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 81 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~ 81 (512)
+|++|||++|++.+....+.+.+ +.+--.+-.-.|+|..+............+-....++..+.-++.+++||.+|.+.
T Consensus 184 l~~~t~d~~~~~~A~~~~~~~~~-~~~~~~~g~~~e~~~~~w~~~~~~~~~~~~pgh~~e~a~lL~~~~~~tgd~~~~~~ 262 (388)
T 2gz6_A 184 MEWLLPQETLENVLAATVQEVMG-DFLDQEQGLMYENVAPDGSHIDCFEGRLINPGHGIEAMWFIMDIARRKNDSKTINQ 262 (388)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHH-TTEETTTTEECSEECTTSCCCCSTTTTEECHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH-HHhccCCCeEEEEECCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 47899999999999999998875 44432211223444332211010112234444455666777788888999999999
Q ss_pred HHHHHhccccccCCCCCCCcEEEe
Q 010393 82 YERSLTNGVLGIQRGTEPGVMIYL 105 (512)
Q Consensus 82 ~EralyN~vla~q~~~~~g~~~Y~ 105 (512)
.++++=..+--+.++ +.|.++|.
T Consensus 263 A~~~~~~~~~~g~d~-~~Gg~~~~ 285 (388)
T 2gz6_A 263 AVDVVLNILNFAWDN-EYGGLYYF 285 (388)
T ss_dssp HHHHHHHHHHHHBCT-TTCSBCSC
T ss_pred HHHHHHHHHHHhccC-CCCCEEEe
Confidence 887765443334554 44555554
No 10
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=84.96 E-value=0.61 Score=47.80 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=55.3
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhh-HHHHHHHHHHHhccCCCchHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT-YNMLKVSRHLFRWTKEIAYAD 80 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas-~nmlkl~~~Lf~~tgd~~YaD 80 (512)
+|++|||++|++++...++.+..+---..||. |+.+. ....+-|-. +=.+-+.-+|.++|||++|.|
T Consensus 99 lY~~Tgd~~yl~~a~~la~~l~~~~r~~~G~f-----w~~~~-------~~~~~w~D~l~m~~p~L~~l~~~tgd~~y~d 166 (373)
T 1nc5_A 99 LYEQTKDERYVKAAKRLRSLYGTLNRTSEGGF-----WHKDG-------YPYQMWLDGLYMGGPFALKYANLKQETELFD 166 (373)
T ss_dssp HHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCB-----CSCTT-------STTEEETHHHHHHHHHHHHHHHHHTCTHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhccCCCCCCe-----eccCC-------CCCeEEeCcHHHHHHHHHHHHHHHCCHHHHH
Confidence 48999999999999999999854221122333 43211 111222333 212345567899999999999
Q ss_pred HHHHHHhccccccCCCCCCCcE
Q 010393 81 YYERSLTNGVLGIQRGTEPGVM 102 (512)
Q Consensus 81 ~~EralyN~vla~q~~~~~g~~ 102 (512)
..++.+-...--..++ ++|.+
T Consensus 167 ~A~~~~~~~~~~l~D~-~tGl~ 187 (373)
T 1nc5_A 167 QVVLQESLMRKHTKDA-KTGLF 187 (373)
T ss_dssp HHHHHHHHHHHHHBCT-TTSCB
T ss_pred HHHHHHHHHHHHhcCC-CCCCE
Confidence 9999766555444555 45544
No 11
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=84.94 E-value=0.42 Score=48.99 Aligned_cols=102 Identities=8% Similarity=-0.076 Sum_probs=63.4
Q ss_pred EEEcCChhHHHHHHHHHHHh-hccceEe-e-cCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchH
Q 010393 3 YEVTGDQLHKTISMFFMDIV-NSSHTYA-T-GGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYA 79 (512)
Q Consensus 3 Ye~TGD~~y~~aa~~fwd~V-~~~h~y~-t-GG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~Ya 79 (512)
++++||+.|+++|+...+.+ .+ +++- - ||.-..-.+ .......+.......+..-+++.-.-.|++.|||.+|.
T Consensus 260 ~~~~~~~~~l~~A~~~~~~~~~~-~~~d~~~gg~~~~~~~--~g~~~~~l~d~~~~~W~qaea~~a~l~ly~~tgd~~yl 336 (402)
T 1fp3_A 260 SSRSGDAKLRAHVIDTFLLLPFR-SGWDADHGGLFYFQDA--DGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALL 336 (402)
T ss_dssp HHHTTCHHHHHHHHHHHTHHHHH-HHBCTTTCSBCSCEET--TSCCCSSTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHH-HhccCCCCCEEEeecC--CCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHH
Confidence 56799999999999988888 64 3332 2 554321111 01112233344556677778888899999999999999
Q ss_pred HHHHHHHhcccccc-CCCCCCCcEEEeccC
Q 010393 80 DYYERSLTNGVLGI-QRGTEPGVMIYLLPL 108 (512)
Q Consensus 80 D~~EralyN~vla~-q~~~~~g~~~Y~~pl 108 (512)
+.+++. .+-+... .++..++.|.+..+-
T Consensus 337 ~~a~~~-~~~~~~~f~D~~~G~w~~~~~~~ 365 (402)
T 1fp3_A 337 RLFYQV-AEYTFRQFRDPEYGEWFGYLNRE 365 (402)
T ss_dssp HHHHHH-HHHHHHHTBCTTTSSBCCEECTT
T ss_pred HHHHHH-HHHHHHhCcCCCCCceEeeECCC
Confidence 988874 3444333 344334455555443
No 12
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=81.07 E-value=22 Score=31.86 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=57.7
Q ss_pred eeEEEecCCcceEEeecCCC--CCccccceEEEEEecCCCCCccccccCCCCceeeecCCCCCCceEEeecCCceeEEec
Q 010393 325 TKFVLTNSNQSITMEKFPKS--GTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTD 402 (512)
Q Consensus 325 ~~f~~~~~~~~l~~~~~p~~--g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~l~p~~~p~~~v~~~~~~~~l~v~~ 402 (512)
..|..+..+|.+++. .|.. +....-.-+|.+..- .++.++|.... |.|+.-... ..|. .+
T Consensus 34 ~~y~~A~~~G~~t~~-~~~~~~~~~~~~~E~f~l~~~-------------~~~~v~LRs~~--GkYLs~~~~-G~v~-a~ 95 (155)
T 2yug_A 34 GAYIHALDNGLFTLG-APHREVDEGPSPPEQFTAVKL-------------SDSRIALKSGY--GKYLGINSD-GLVV-GR 95 (155)
T ss_dssp SCBEEECTTSCEEEC-CCCSSSSCCCCTTTCEEEEEC-------------SSSCEEEEETT--SCBEEECSS-SBEE-EC
T ss_pred CCEEEEEcCCcEEEc-cccccccCCCCCcceEEEEEC-------------CCCEEEEEeCC--CCEEEecCC-CcEE-ec
Confidence 456666667765553 2322 344455668887742 11246676644 888886543 2332 33
Q ss_pred cCCCCCCceEEEeeccCCCCCeEEEeecCCcceEEEEe
Q 010393 403 SFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTA 440 (512)
Q Consensus 403 ~~~~~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~ 440 (512)
.....+..+|.+++- + |.+.|++. -|+||...
T Consensus 96 a~~~g~~E~F~l~~~-~---G~~aLra~--nG~yl~~~ 127 (155)
T 2yug_A 96 SDAIGPREQWEPVFQ-D---GKMALLAS--NSCFIRCN 127 (155)
T ss_dssp CSSCCTTTBEEEECS-T---TCCEEEET--TSCBEEEC
T ss_pred cCCCCCCCEEEEEEE-C---CEEEEEeC--CCCEEEEc
Confidence 455578899999986 3 57999994 49999975
No 13
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=74.66 E-value=1.8 Score=44.56 Aligned_cols=103 Identities=15% Similarity=0.051 Sum_probs=63.1
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccc-cC-CC-------CCcccchhhHHHHHHHHHHHhc
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLA-SN-LD-------SNTEESCTTYNMLKVSRHLFRW 72 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~-~~-l~-------~~~~ETCas~nmlkl~~~Lf~~ 72 (512)
+|++|||+.|++.++...+.+.+ +.+---+-.-.|+|..+.... +. .. ..+.+.=-.++++.|.-++.+.
T Consensus 185 L~~~tgd~~~~~~a~~l~~~~~~-~f~~~~~g~l~e~~~~dw~~~~~~~~~~~~~~~~~~~~~pGH~iE~awlLl~~~~~ 263 (402)
T 3gt5_A 185 AYEASGEQRYLERALVLADRITR-RQAAKADGLVWEHYDMRWEVDWDYNRDNPKHLFRPWGFQPGHQTEWAKLLLILDRY 263 (402)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHT-HHHHTTTTSCCSEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHHH-HhhCccCCeeEEEECCCCCCccccccCCcccccCcCCCCCChHHHHHHHHHHHHHh
Confidence 47899999999999999988864 444322223457765444321 00 00 0112223345566677777788
Q ss_pred cCCCchHHHHHHHHhccccccCCCCCCCcEEEec
Q 010393 73 TKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLL 106 (512)
Q Consensus 73 tgd~~YaD~~EralyN~vla~q~~~~~g~~~Y~~ 106 (512)
+++.+|.+..++++-.++--+-++ +.|.++|+.
T Consensus 264 ~~~~~~~~~A~~l~~~~~~~gwd~-~~Gg~~~~~ 296 (402)
T 3gt5_A 264 IEVEWLVPVARSLFDVAVARSWDA-VRGGLCYGF 296 (402)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHBCT-TTCSBCSEE
T ss_pred hCcHHHHHHHHHHHHHHHHhcccC-CCCcEEEEE
Confidence 999999999998764333334554 456676664
No 14
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=72.31 E-value=1.7 Score=44.37 Aligned_cols=77 Identities=19% Similarity=0.098 Sum_probs=48.5
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEe-ecCCCCCCCCCCCcccccCCCCCcccchhhHH---HHHHHHHHHhccCCCc
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYA-TGGTSVGEFWSDPKRLASNLDSNTEESCTTYN---MLKVSRHLFRWTKEIA 77 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~-tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~n---mlkl~~~Lf~~tgd~~ 77 (512)
+|++|||+.|++.|+.-|+.+.+ +++- .|.+-.++. ... ......+..=+|| +|--+-.|++.|+|++
T Consensus 162 l~~~tgd~~Yl~~A~~~~~w~~~-~l~d~~g~v~Dg~~------~~~-~g~~~~~~~~tYnqg~~l~g~~~LY~~T~d~~ 233 (349)
T 3k7x_A 162 LYNELNETKYLEWAMKTYEWQTK-VLVREDGFVEDGIN------RLE-DGTIDYEWKFTYNQGVYIGANLELYRITKEAI 233 (349)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHH-HHBCTTSCBCCEEC------TTS-SSCBCTTCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHh-cCCCCCCeEecCCc------cCC-CCccCCcCeeeHHHHHHHHHHHHHHHhhCcHH
Confidence 47889999999999999999976 4432 122211111 000 0000011233333 6667788999999999
Q ss_pred hHHHHHHHH
Q 010393 78 YADYYERSL 86 (512)
Q Consensus 78 YaD~~Eral 86 (512)
|.+..++.+
T Consensus 234 yl~~a~~l~ 242 (349)
T 3k7x_A 234 YLDTANKTA 242 (349)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998865
No 15
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=67.84 E-value=3.3 Score=42.72 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=53.6
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccc-eEeecCCCCCCCCCCCcccccCCCCCcccchhh--HHHHHHHHHHHhccCCCch
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSH-TYATGGTSVGEFWSDPKRLASNLDSNTEESCTT--YNMLKVSRHLFRWTKEIAY 78 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h-~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas--~nmlkl~~~Lf~~tgd~~Y 78 (512)
+|++|||++|++++....+.+..+. --..||+-.. ... . ...+.-=|-. .++. +.-++.++|||++|
T Consensus 122 lY~~Tgd~~Yl~~a~~~ad~L~~~~~r~~~Ggf~~~-----~~~--~--~~~~~~WiDgl~M~~p-~La~~~~~tgd~~y 191 (382)
T 3pmm_A 122 RFEETGRMAYLPWLESWAEWAMHEMPRTEQGGMQHM-----TLA--E--ENHQQMWDDTLMMTVL-PLAKIGKLLNRPQY 191 (382)
T ss_dssp HHHHHCCGGGHHHHHHHHHHHHHTSCBCGGGCBCCC-----CSS--C--CCTTEEETTHHHHTHH-HHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhhCCCCcCCCeeee-----cCC--C--CCCCcEEecchhhhHH-HHHHHHHHHCCHHH
Confidence 5899999999999999999885432 2345555321 100 0 0111111221 2333 44678899999999
Q ss_pred HHHHHHHHhccccccCCCCCCCcE
Q 010393 79 ADYYERSLTNGVLGIQRGTEPGVM 102 (512)
Q Consensus 79 aD~~EralyN~vla~q~~~~~g~~ 102 (512)
.|.+.+-+....--..++ ++|.+
T Consensus 192 ~d~A~~q~~~~~~~l~D~-~tGl~ 214 (382)
T 3pmm_A 192 VEEATYQFLLHVQNLMDR-ETGLW 214 (382)
T ss_dssp HHHHHHHHHHHHHHHBCT-TTSCB
T ss_pred HHHHHHHHHHHHHHccCC-CCCCe
Confidence 998877665554444554 44543
No 16
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=62.74 E-value=4.1 Score=41.95 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=42.8
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 81 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~ 81 (512)
.|++|||++|++.++.+.+...+. ||. +.+ ++. .|.. ...-.||+.|||.+|.+.
T Consensus 80 ~ye~Tgd~~y~~~a~~~~~~~~~~-----~~~-----------~~n-~D~----~~~~----~~l~~lY~~Tgd~~Yl~~ 134 (382)
T 3pmm_A 80 YYQQTGDIEMRDIIDRWFADRFAE-----GAT-----------TKN-VNT----MAPF----LTLAYRFEETGRMAYLPW 134 (382)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHH-----CCC-----------CCC-TTT----TTTH----HHHHHHHHHHCCGGGHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHcC-----CCC-----------cCc-ccc----hHHH----HHHHHHHHHhCCHHHHHH
Confidence 589999999999999988866542 221 101 111 1332 234689999999999999
Q ss_pred HHHHHhccccc
Q 010393 82 YERSLTNGVLG 92 (512)
Q Consensus 82 ~EralyN~vla 92 (512)
.++.. +.++.
T Consensus 135 a~~~a-d~L~~ 144 (382)
T 3pmm_A 135 LESWA-EWAMH 144 (382)
T ss_dssp HHHHH-HHHHH
T ss_pred HHHHH-HHHHh
Confidence 87654 34443
No 17
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=61.46 E-value=2.8 Score=43.12 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=61.9
Q ss_pred EEEcCChhHHHHHHHHHHHhhccceEe--ecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHH
Q 010393 3 YEVTGDQLHKTISMFFMDIVNSSHTYA--TGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYAD 80 (512)
Q Consensus 3 Ye~TGD~~y~~aa~~fwd~V~~~h~y~--tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD 80 (512)
++++||+.|++.|...++.+.+ +.+- .||+-. +. .++ +.........+...+.|.-.-.|++.|||.+|.+
T Consensus 261 ~~~~~~~~~~~~A~~l~~~~~~-~gwd~~~Gg~~~-~~--d~~---g~~~~~~k~~W~qaEal~a~l~ly~~tgd~~yl~ 333 (402)
T 3gt5_A 261 DRYIEVEWLVPVARSLFDVAVA-RSWDAVRGGLCY-GF--APD---GTICDDDKYFWVQAESLAAAALLATRSGDERYWQ 333 (402)
T ss_dssp HHHCCCTTHHHHHHHHHHHHHH-HHBCTTTCSBCS-EE--CTT---SCEEECCEEHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHhhCcHHHHHHHHHHHHHHHH-hcccCCCCcEEE-EE--cCC---CCeeeCCcceeHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4668999999999988888764 3332 355521 11 111 1111345577788888888999999999999999
Q ss_pred HHHHHH---hccccccCCCCCCCcEEEeccC
Q 010393 81 YYERSL---TNGVLGIQRGTEPGVMIYLLPL 108 (512)
Q Consensus 81 ~~Eral---yN~vla~q~~~~~g~~~Y~~pl 108 (512)
.++++. ..+++-.. .+..+.+.++-
T Consensus 334 ~a~~~~~~~~~~~~D~~---~G~W~~~l~~d 361 (402)
T 3gt5_A 334 WYDRLWAYAWQHMVDHR---YGAWYRLLDGD 361 (402)
T ss_dssp HHHHHHHHHHHHTBCTT---TCSBCSEECTT
T ss_pred HHHHHHHHHHHhCcCCC---CCeEEEEECCC
Confidence 998874 34444322 33456666543
No 18
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=61.37 E-value=6 Score=40.87 Aligned_cols=99 Identities=8% Similarity=-0.011 Sum_probs=59.8
Q ss_pred EEEc---CC--h-hHHHHHHHHHHHhhccceEe-e--cCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhcc
Q 010393 3 YEVT---GD--Q-LHKTISMFFMDIVNSSHTYA-T--GGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWT 73 (512)
Q Consensus 3 Ye~T---GD--~-~y~~aa~~fwd~V~~~h~y~-t--GG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~t 73 (512)
|+++ || + .|++.|...++.+.+ +.+- - ||.--. ..+. +.+.....+.+..-++++-.-.|+++|
T Consensus 260 ~~~~~~~~~~~~~~~l~~A~~l~~~~~~-~g~d~~~~GG~~~~---~~~~---g~~~~~~k~~w~~aea~~all~l~~~t 332 (421)
T 2zbl_A 260 HAALEARFETPPAWLLEDAKGLFHATIR-DAWAPDGADGFVYS---VDWD---GKPIVRERVRWPIVEAMGTAYALYTLT 332 (421)
T ss_dssp HHHHHHTTCCCCTHHHHHHHHHHHHHHH-HHBSCSSSSSBCSC---BCTT---SCBSCCCEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccccccchHHHHHHHHHHHHHHHH-HhcCCCCCCcEEEe---ecCC---CCccCCCcccHHHHHHHHHHHHHHHHh
Confidence 4455 56 5 899999998888864 4442 2 443211 1111 111234556666777888888899999
Q ss_pred CCCchHHHHHHHHhcccccc-CCCCCCCcEEEeccCC
Q 010393 74 KEIAYADYYERSLTNGVLGI-QRGTEPGVMIYLLPLA 109 (512)
Q Consensus 74 gd~~YaD~~EralyN~vla~-q~~~~~g~~~Y~~pl~ 109 (512)
||.+|.+.+++.+ +.+... .++..++.+.+..+.+
T Consensus 333 gd~~yl~~a~~~~-~~~~~~~~d~~~G~w~~~l~~~g 368 (421)
T 2zbl_A 333 DDSQYEEWYQKWW-DYCIKYLMDYENGSWWQELDADN 368 (421)
T ss_dssp CCHHHHHHHHHHH-HHHHHHTBCTTTSSBCSEECTTS
T ss_pred CCHHHHHHHHHHH-HHHHHhCCCCCCCeeEeeECcCc
Confidence 9999999998853 333332 2322344556655443
No 19
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=60.57 E-value=31 Score=29.98 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=26.3
Q ss_pred EEEEEEEeCCCCeeeEEEEeccC-CccCCCcEEEECCeec
Q 010393 191 RVTLTFSSKGSGLTTSLNLRIPT-WTSSNGAKATLNGQDL 229 (512)
Q Consensus 191 ~V~ltv~~~~~~~~ftL~lRIP~-Wa~~~~~~v~VNG~~~ 229 (512)
.|+++|... +....+|.+|.-. +.......|.|||+.+
T Consensus 40 ~v~~~V~v~-~aG~Y~l~~ryang~~~~r~~~l~VNG~~~ 78 (139)
T 2w87_A 40 AVVWAIDAT-SSGRRTLTIRYANGGTANRNGSLVINGGSN 78 (139)
T ss_dssp EEEEEEEES-SCEEEEEEEEEECCSSSCCCEEEEETTTTT
T ss_pred EEEEEEECC-CCcEEEEEEEEECCCCCCceEEEEECCEEc
Confidence 566777654 5677888888864 3221258899999875
No 20
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=58.89 E-value=3.9 Score=41.75 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=45.8
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHH
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 81 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~ 81 (512)
.|++|||++|++.++.+.+.+... .|.-. |... . -+.|+ +....-.|++.|+|++|.+.
T Consensus 53 ~y~~tgd~~y~~~a~~~~~~~~~~-----~g~l~---~~~~---------~-lDd~~---~g~~ll~lY~~Tgd~~yl~~ 111 (373)
T 1nc5_A 53 LWEATGEKRYFEYAKAYADLLIDD-----NGNLL---FRRD---------E-LDAIQ---AGLILFPLYEQTKDERYVKA 111 (373)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHBCT-----TCCBC---CCTT---------C-GGGTG---GGGGHHHHHHHHCCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhCC-----CCccc---CCCC---------C-cchHH---HHHHHHHHHHHhCCHHHHHH
Confidence 478999999999999999886421 12111 2111 0 34444 33566789999999999999
Q ss_pred HHHHHhccccc
Q 010393 82 YERSLTNGVLG 92 (512)
Q Consensus 82 ~EralyN~vla 92 (512)
+++.. +.+..
T Consensus 112 a~~la-~~l~~ 121 (373)
T 1nc5_A 112 AKRLR-SLYGT 121 (373)
T ss_dssp HHHHH-GGGGT
T ss_pred HHHHH-HHHHh
Confidence 87754 44543
No 21
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=55.06 E-value=15 Score=38.23 Aligned_cols=78 Identities=9% Similarity=0.106 Sum_probs=45.1
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCC-CcccccCCCCCcccchhhHHHHHHHHHHHhccCC---Cc
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSD-PKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKE---IA 77 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~-~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd---~~ 77 (512)
.|+.|||++|++.|...-+.+.++ . .-.|+. +|.- .+.++....+.-.-.+++.+|++| .+++++ .+
T Consensus 258 lY~~T~d~~yL~~A~~la~~~l~~-~-~~d~~p---ywdt~~~~~~~~~~D~Sa~aiaA~~Ll~L----~~~~~~~~~~~ 328 (397)
T 2zzr_A 258 SYRKMKDYQQIILFKGMTNYFLNR-L-PEDKVS---YWDLIFTDGSGQPRDTSATATAVCGIHEM----LKYLPEVDPDK 328 (397)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHT-C-CTTSCC---BSBTTCCTTSCCCBCHHHHHHHHHHHHHH----HTTSCTTCTTH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHh-h-HHhCCc---cccCCCCCCCCCcCCCCHHHHHHHHHHHH----HHhcCccchhh
Confidence 589999999999999998888753 3 221211 3311 111221111212233444556554 455665 77
Q ss_pred --hHHHHHHHHhc
Q 010393 78 --YADYYERSLTN 88 (512)
Q Consensus 78 --YaD~~EralyN 88 (512)
|.+..|++|=.
T Consensus 329 ~~Y~~~A~~~l~~ 341 (397)
T 2zzr_A 329 ETYKYAMHTMLRS 341 (397)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 99999887754
No 22
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=52.93 E-value=57 Score=28.54 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=26.4
Q ss_pred EEEEEEEeCCCCeeeEEEEecc-CCccCCCcEEEECCeec
Q 010393 191 RVTLTFSSKGSGLTTSLNLRIP-TWTSSNGAKATLNGQDL 229 (512)
Q Consensus 191 ~V~ltv~~~~~~~~ftL~lRIP-~Wa~~~~~~v~VNG~~~ 229 (512)
.|+++|+.. ++...+|.+|.- +........|.|||+.+
T Consensus 40 ~v~~~V~v~-~aG~Y~l~~ryang~~~~r~~~l~VNG~~~ 78 (145)
T 2w3j_A 40 SIVWSLSAA-SAKTYTAQIRFGNGGTSARRATVVVNDSQI 78 (145)
T ss_dssp EEEEEEEES-SCEEEEEEEEEECCSSSCCCEEEEETTEEE
T ss_pred EEEEEEECC-CCeEEEEEEEEECCCCCCeEEEEEECCeEe
Confidence 577777664 567788888886 33222257899999875
No 23
>2ila_A Interleukin-1 alpha; cytokine; 2.30A {Homo sapiens} SCOP: b.42.1.2 PDB: 2kki_A 2l5x_A
Probab=48.76 E-value=11 Score=34.32 Aligned_cols=26 Identities=15% Similarity=0.016 Sum_probs=21.9
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 010393 423 RTVSLESETYKGCFVYTAVNLQSSESTKLG 452 (512)
Q Consensus 423 g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 452 (512)
.+.+|||+.+||||+-.. .++-|.|.
T Consensus 114 ~~~~FESaa~PgWFI~Ts----~~qPV~Lt 139 (155)
T 2ila_A 114 TKNYFTSVAHPNLFIATK----QDYWVCLA 139 (155)
T ss_pred CeeEEEeccCCCcEEEcC----CCCCeEee
Confidence 589999999999999873 26778777
No 24
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A*
Probab=48.18 E-value=2.4e+02 Score=30.02 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=37.4
Q ss_pred CCCceEEeecCCceeEEeccCCCCCCceEEEeeccCCCCCeEEEeecCCcceEEEEe
Q 010393 384 SPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTA 440 (512)
Q Consensus 384 ~p~~~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~ 440 (512)
.-|.|+.-.+....|.+..+...+.+.+|.++- ..+.|+|++. .|+||...
T Consensus 226 ~~GkYL~~~g~~g~L~~~~~~~~g~~E~F~L~~----~~~qVaL~s~--ngkyVsa~ 276 (493)
T 3llp_A 226 CEGRYLAPSGPSGTLKAGKATKVGKDELFALEQ----SCAQVVLQAA--NERNVSTR 276 (493)
T ss_dssp TTSCBEEEETTTTEEEECC---CCGGGCEEEEE----CCCEEEEECT--TSCEEECC
T ss_pred CCCCEEeEECCCCeEEeccCCCCCCceEEEEEe----CCCEEEEEec--CCcEEEec
Confidence 667888888765566544455567789999996 3689999987 89999864
No 25
>2wry_A IL-1 beta, interleukin-1BETA; immune system, pyrogen, mitogen, inflammatory response; 1.58A {Gallus gallus} PDB: 3nj5_A
Probab=48.16 E-value=13 Score=33.91 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=26.1
Q ss_pred EEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 010393 412 FHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLG 452 (512)
Q Consensus 412 f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 452 (512)
||-..|. ..+.+|||+.+||||+-.. ...++-|.|.
T Consensus 111 yr~~~G~---~~~~tfESaa~PgWFI~Ts--~~~~qPV~Lt 146 (162)
T 2wry_A 111 YRLDSPT---EGTTRFESAAFPGWFICTS--LQPRQPVGIT 146 (162)
T ss_dssp EEEEETT---TTEEEEEESSSTTCEEEBC--SSSSEECEEE
T ss_pred EEecCCC---CCceEEEeccCCCcEEEcC--CCCCeEEEee
Confidence 4455664 3699999999999999863 1246677776
No 26
>2nvh_A IL-1 beta, interleukin-1 beta, catabolin; water, hydration, protein folding, cytokine; 1.53A {Homo sapiens} SCOP: b.42.1.2 PDB: 1iob_A 1itb_A 2i1b_A 2kh2_A 1i1b_A 4i1b_A 5i1b_A 6i1b_A 7i1b_A 9ilb_A 4dep_A* 3o4o_A* 1twm_A 1twe_A 1s0l_A 1too_A 1t4q_A 41bi_A 21bi_A 1hib_A ...
Probab=46.41 E-value=9.1 Score=34.65 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=22.1
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 010393 423 RTVSLESETYKGCFVYTAVNLQSSESTKLG 452 (512)
Q Consensus 423 g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 452 (512)
.+.+|||+.+||||+-.. ...++-|.|.
T Consensus 108 ~~~~fESaa~PgWFI~Ts--~~~~qPV~Lt 135 (153)
T 2nvh_A 108 NKLEFESAQFPNWYISTS--QAENMPVFLG 135 (153)
T ss_dssp TEEEEEESSSTTCEEEBC--SSTTEECEEE
T ss_pred CeeEEEeccCCCcEEecC--CCCCeEEEee
Confidence 689999999999999863 1246677777
No 27
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=46.31 E-value=15 Score=37.84 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=44.8
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCC-cccccCCCCCcccchhhHHHHHHHHHHHhccC-----C
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDP-KRLASNLDSNTEESCTTYNMLKVSRHLFRWTK-----E 75 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~-~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tg-----d 75 (512)
.|+.|+|++|++.|+..-+.+.++ . .-.|+. +|.-. ..++....+.-.-.+++.+|+++++ +++ +
T Consensus 233 ly~~T~d~~yL~~A~~la~~~l~~-~-~~d~~p---ywd~~~~~~~~~~~d~Sa~aiaA~~Ll~L~~----~~~~~~~~~ 303 (377)
T 2ahf_A 233 NSRYLGNADLLETAKRMARHFLAR-V-PEDGVV---YWDFEVPQEPSSYRDSSASAITACGLLEIAS----QLDESDPER 303 (377)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTT-C-CTTSSC---BSBTTSCCCTTSCBCHHHHHHHHHHHHHHHH----TSCTTCHHH
T ss_pred HHHHHCChHHHHHHHHHHHHHHHh-h-HHhCCc---ccccCCCccCCCccCCCHHHHHHHHHHHHHH----hcCccccch
Confidence 589999999999999998888754 3 221111 33211 1121111111223444566666554 454 5
Q ss_pred CchHHHHHHHHhc
Q 010393 76 IAYADYYERSLTN 88 (512)
Q Consensus 76 ~~YaD~~EralyN 88 (512)
.+|.+..|+++=.
T Consensus 304 ~~Y~~~A~~~l~~ 316 (377)
T 2ahf_A 304 QRFIDAAKTTVTA 316 (377)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6798888887754
No 28
>1md6_A Interleukin 1 family, member 5 (delta); beta triple, alpha helix, immune system; 1.60A {Mus musculus} SCOP: b.42.1.2
Probab=45.05 E-value=9.1 Score=34.71 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=21.5
Q ss_pred eEEEeecCCcceEEEEeeccCCCCcEEEE
Q 010393 424 TVSLESETYKGCFVYTAVNLQSSESTKLG 452 (512)
Q Consensus 424 ~vsles~~~pg~~l~~~~~~~~g~~~~l~ 452 (512)
+.+|||+.+||||+-.. ...++-|.|.
T Consensus 107 ~~tfESaa~PgWFI~Ts--~~~~qPV~Lt 133 (154)
T 1md6_A 107 TSSFESAAYPGWFLCTS--PEADQPVRLT 133 (154)
T ss_dssp CEEEEESSSTTCEEEBC--SSSSEECEEE
T ss_pred eEEEEeccCCCcEEecC--CCCCeEEEee
Confidence 89999999999999863 1246677777
No 29
>1ilt_A Interleukin-1 receptor antagonist; cytokine; 2.00A {Homo sapiens} SCOP: b.42.1.2 PDB: 1ilr_1 1ira_X* 2irt_A 1irp_A
Probab=40.67 E-value=11 Score=34.19 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=21.2
Q ss_pred eEEEeecCCcceEEEEeeccCCCCcEEEE
Q 010393 424 TVSLESETYKGCFVYTAVNLQSSESTKLG 452 (512)
Q Consensus 424 ~vsles~~~pg~~l~~~~~~~~g~~~~l~ 452 (512)
+.+|||+.+||||+-.. ...++-|.|.
T Consensus 108 ~~~fESaa~PgWFI~Ts--~~~~~PV~Lt 134 (152)
T 1ilt_A 108 TTSFESAACPGWFLCTA--MEADQPVSLT 134 (152)
T ss_pred ceEEEeccCCCcEEEcC--CcCCeEEEee
Confidence 89999999999999863 1235567776
No 30
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=35.71 E-value=1.3e+02 Score=25.79 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=23.4
Q ss_pred EEEEEEEeCCCCeeeEEEEeccC-CccCCCcEEEECCeec
Q 010393 191 RVTLTFSSKGSGLTTSLNLRIPT-WTSSNGAKATLNGQDL 229 (512)
Q Consensus 191 ~V~ltv~~~~~~~~ftL~lRIP~-Wa~~~~~~v~VNG~~~ 229 (512)
.|+++|+.. ++...+|.+|.=. -.......|.|||+.+
T Consensus 41 ~v~~~V~v~-~aG~Y~l~~ryan~~~~~~~~~l~VNG~~~ 79 (144)
T 2w47_A 41 YIEWNVNAP-SSGSYALIFRYANGTTANRPMRITVNGNIV 79 (144)
T ss_dssp EEEEEEEES-SSEEEEEEEEEECCSSSCCCEEEEETTEEE
T ss_pred EEEEEEECC-CCcEEEEEEEEECCCCCCeEEEEEECCeEe
Confidence 566666653 4566777777622 1111157899999863
No 31
>3ltq_A Interleukin-1 beta; lanthanide binding TAG, LBT, terbium, IL1B, cytokine, inflam response, mitogen, pyrogen, secreted; 2.10A {Homo sapiens} SCOP: b.42.1.2
Probab=33.75 E-value=19 Score=33.20 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=21.5
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 010393 423 RTVSLESETYKGCFVYTAVNLQSSESTKLG 452 (512)
Q Consensus 423 g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 452 (512)
.+.+|||+.+||||+-.. ...++-|.|.
T Consensus 126 s~stFESaa~PGWFI~Ts--~~~~qPV~Lt 153 (171)
T 3ltq_A 126 NKLEFESAQFPNWYISTS--QAENMPVFLG 153 (171)
T ss_dssp TEEEEEESSSTTCEEEBC--SSTTEECEEE
T ss_pred CceEEEecCCCCCEEeec--CCCCeeEEee
Confidence 478999999999999863 1245677776
No 32
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.52 E-value=9.9 Score=40.15 Aligned_cols=92 Identities=10% Similarity=0.032 Sum_probs=51.0
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccce----E--eecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCC
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHT----Y--ATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKE 75 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~----y--~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd 75 (512)
.|++|||++|++.++.+.+.+.+..- + ..|.... +++.. .....-+-|+...+..+ .+++.|+|
T Consensus 94 ay~~Tgd~kY~~ya~~~~dfi~~~~p~~~~~~~~~G~l~~------~~r~~--~~~~~LDD~g~~~~~Li--~lY~~T~d 163 (445)
T 3k11_A 94 AAETTGDKRYTDYVQNRFRFLAEVAPHFKRVYEEKGKTDS------QLLQI--LTPHALDDAGAVCTAMI--KLRLKDES 163 (445)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH------HHHHH--HSCCSGGGTHHHHHHHH--HHHHHCTT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhccchhhhhhhccCCeec------ccccc--cCCCcchhHHHHHHHHH--HHHHhcCC
Confidence 47899999999999999887653110 0 1232211 00000 01112233554443333 78889999
Q ss_pred CchHHHHHHHHhccccccCCCCCCCcEEE
Q 010393 76 IAYADYYERSLTNGVLGIQRGTEPGVMIY 104 (512)
Q Consensus 76 ~~YaD~~EralyN~vla~q~~~~~g~~~Y 104 (512)
.+|.+.++.. .+.++..+..++.|.|.+
T Consensus 164 ~~yl~~a~~~-ad~L~~~~pRt~~Ggf~h 191 (445)
T 3k11_A 164 LPVDGLIQNY-FDFIINKEYRLADGTFAR 191 (445)
T ss_dssp CCCHHHHHHH-HHHHHHTSCBCTTCCBCB
T ss_pred HHHHHHHHHH-HHHHHHcCCCCCCCceee
Confidence 9999999754 344444432123455543
No 33
>2kll_A Interleukin-33; beta-trefoil, cytokine, polymorphism, secreted; NMR {Homo sapiens}
Probab=30.51 E-value=2.8e+02 Score=24.40 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=66.4
Q ss_pred CCCCceeeeeeecCCeeEEEecCCcceEEeecCCCCCccccceEEEEEecCCCCCccccccCCCCcee--eecCCCCCCc
Q 010393 310 SYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSV--MLEPFDSPGM 387 (512)
Q Consensus 310 ~~~~~~~~~~~~~g~~~f~~~~~~~~l~~~~~p~~g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v--~l~p~~~p~~ 387 (512)
.+|+|-.+|.-++|.-...+. -.- +...--...||.......++. .--+.+|+.+ .|.|-- +-
T Consensus 19 TYNDQsitFv~EdgsYeIyve---------Dl~--kdqekDkVLlryY~Sq~ps~e--tgdgvdg~~LmVnlSP~K--Df 83 (161)
T 2kll_A 19 TYNDQSITFALEDESYEIYVE---------DLK--KDEKKDKVLLSYYESQHPSNE--SGDGVDGKMLMVTLSPTK--DF 83 (161)
T ss_dssp ETTTEEEEEEECSSCEEEEEE---------ECC--SCCCCCCEEEEEEECCCCTTT--SCCCCSCCCEEEEEESSS--SE
T ss_pred cccCceEEEEEeCCcEEEEeh---------hhc--cchhcceEEEEeccCCCCccc--cCCCccccEEEEEccccc--ce
Confidence 356666666555544333332 221 444455677886544322212 1222466665 555554 55
Q ss_pred eEEeecCCceeEEeccCCCCCCceEEEeeccCCCCCeEEEeecCCcceEEEEe
Q 010393 388 LVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTA 440 (512)
Q Consensus 388 ~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~ 440 (512)
.+-....+-.+.+.---.+.+++.|.+.--.. +.+||||-.+.||.|+-+.
T Consensus 84 ~LHANnkehSVELqkce~~lPdQaFFvlH~~s--s~cVSFEck~~PGvfiGVK 134 (161)
T 2kll_A 84 WLHANNKEHSVELHKCEKPLPDQAFFVLHNMH--SNCVSFECKTDPGVFIGVK 134 (161)
T ss_dssp EEEEETTTTEEEEEECCSSCCTTTCEEEEECS--SSCEEEEESSSTTEEEEES
T ss_pred eEecCCccceeEeecccCCCCcceEEEEecCC--CceEEEEecCCCceEEEec
Confidence 44444555455545455567888888875442 5799999999999999764
No 34
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=29.19 E-value=46 Score=34.14 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=47.3
Q ss_pred EEEcCChhHHHHHHHHHHHhhccceEe--ecCCCC--CCCCCCCcccccCCCCCcccchhhHHH--HHHHHHHHhccCCC
Q 010393 3 YEVTGDQLHKTISMFFMDIVNSSHTYA--TGGTSV--GEFWSDPKRLASNLDSNTEESCTTYNM--LKVSRHLFRWTKEI 76 (512)
Q Consensus 3 Ye~TGD~~y~~aa~~fwd~V~~~h~y~--tGG~s~--~E~f~~~~~l~~~l~~~~~ETCas~nm--lkl~~~Lf~~tgd~ 76 (512)
|++|||+.|++.++...+.+.+ |+.- .||.-. +.-+.. +.+ . . .-.-+| +.-.-+|+++++|.
T Consensus 123 ~~~tg~~~~l~~a~~~~~~l~~-~~~d~~~Ggf~~~~d~d~~~---~~~-----~-~-~~n~~m~~~~al~~l~~~tgd~ 191 (421)
T 2zbl_A 123 AVTTGHPEARKLLDYTIEVIEK-YFWSEEEQMCLESWDEAFSQ---TED-----Y-R-GGNANMHAVEAFLIVYDVTHDK 191 (421)
T ss_dssp HHTTTCTTHHHHHHHHHHHHHH-HTEETTTTEECCEECTTSCS---BCS-----C-E-EHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHhCCccHHHHHHHHHHHHHH-HhccCCCCCeeeeecCCCCc---ccc-----c-C-CCcHHHHHHHHHHHHHHhhCCH
Confidence 6789999999999999888875 6654 344321 111110 100 1 1 122333 55556789999999
Q ss_pred chHHHHHHHHhc
Q 010393 77 AYADYYERSLTN 88 (512)
Q Consensus 77 ~YaD~~EralyN 88 (512)
+|.+..++++=.
T Consensus 192 ~~~~~A~~~~~~ 203 (421)
T 2zbl_A 192 KWLDRALRIASV 203 (421)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877633
No 35
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=27.76 E-value=74 Score=27.62 Aligned_cols=34 Identities=24% Similarity=0.116 Sum_probs=23.6
Q ss_pred cEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecceeEEEe
Q 010393 220 AKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEA 262 (512)
Q Consensus 220 ~~v~VNG~~~~~~~~~gY~~I~R~W~~GD~I~l~Lpm~lr~~~ 262 (512)
-.|+|||+.+... + .-+.||+|+|.++-..+...
T Consensus 34 G~V~VNG~~vk~s----~-----~V~~GD~I~I~~~~~~~~~~ 67 (133)
T 1dm9_A 34 GKVHYNGQRSKPS----K-----IVELNATLTLRQGNDERTVI 67 (133)
T ss_dssp TCEEETTEECCTT----C-----BCCTTCEEEEEETTEEEEEE
T ss_pred CcEEECCEEcCCC----C-----EeCCCCEEEEEeCCceeeEE
Confidence 4689999975321 1 12679999999987665544
No 36
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=26.81 E-value=1.2e+02 Score=29.44 Aligned_cols=110 Identities=21% Similarity=0.208 Sum_probs=53.2
Q ss_pred eecCCceeEEeccCCCCCCceEEEeeccCCC-CCeEEEeecCCcceEEEEeeccCCCCcEEEEeecCCCcccccccccee
Q 010393 391 QHETDDELVVTDSFIAQGSSVFHLVAGLDGG-DRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFV 469 (512)
Q Consensus 391 ~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~-~g~vsles~~~pg~~l~~~~~~~~g~~~~l~~~~~~~~~~f~~~asF~ 469 (512)
+||---.++|. ++...+.+.|-+.|+..+. .+.|- .++..-.|.+. .|..|.|.|+...+ ..+--+=|+
T Consensus 104 ~WGqGT~VTVS-Sast~~ps~~~l~~~~sgGSgsdiv---ltQsP~slsvs----~G~~vtlsC~~S~~--~~~~l~Wyq 173 (254)
T 4f9p_D 104 YWGQGTLVTVS-AAGGGGSGGGGSGGGGSGGGGSDIV---LTQSPVTLSVT----PGDSVSLSCRASQS--ISNNLHWYR 173 (254)
T ss_dssp EECCCEEEEEC-C-------------------CCSCC---EEEECSEEEEC----TTCEEEEEEEESSC--CTTCCEEEE
T ss_pred CcCCCEEEEEe-CCCCcCCCCCCCccccccccccccc---cccCCceeEEc----CCCcEeeEEEccCc--ccCCcEEEE
Confidence 46655566653 5666777889888887332 12221 24444455442 79999999973222 122234455
Q ss_pred cccCCC------------ccCCeeEEEecCCCceeecccccccccceEEEEeec
Q 010393 470 IEKGLS------------EYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQ 511 (512)
Q Consensus 470 ~~~gl~------------~~~~~Sf~a~g~~~~~ll~pl~~~~~e~y~~yf~~~ 511 (512)
+++|=+ +--|--|-..|.+-+|-|. +.+|+-|--.+||=.|
T Consensus 174 Q~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLt-Is~lq~eD~A~YYC~q 226 (254)
T 4f9p_D 174 QKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLS-INSVETEDFGIYFCQQ 226 (254)
T ss_dssp ECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEE-EESCCTTCCEEEEEEE
T ss_pred ECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEE-ECCCCHHHCEEEEEee
Confidence 565532 1123346667777777554 7899999999999654
No 37
>2x2s_A Agglutinin, agglutinin SSA; fungal lectin, beta-trefoil domain, cell adhesion; 1.60A {Sclerotinia sclerotiorum} PDB: 2x2t_A*
Probab=26.43 E-value=1.2e+02 Score=27.14 Aligned_cols=45 Identities=4% Similarity=-0.025 Sum_probs=33.2
Q ss_pred CCCceEEEee-ccCCCCCeEEEeecCCcceEEEEe-eccCCCCcEEEE
Q 010393 407 QGSSVFHLVA-GLDGGDRTVSLESETYKGCFVYTA-VNLQSSESTKLG 452 (512)
Q Consensus 407 ~~~s~f~~vp-gl~g~~g~vsles~~~pg~~l~~~-~~~~~g~~~~l~ 452 (512)
.++..|||.| |-+| +|+..+|++..+|.=|-+. .+-..|.+|..-
T Consensus 92 ~~~~rWrI~~~G~~~-~G~f~I~nk~~s~~vldV~~~~t~~GAdVi~~ 138 (153)
T 2x2s_A 92 DPSARWTIKPATTHQ-YEVFTINNKVSELGQLTVKDYSTHSGADVLSA 138 (153)
T ss_dssp CGGGCEEEEESCC---CCCEEEEESSGGGCEEEEGGGCCSTTCBEEEE
T ss_pred CccceEEEEeccccC-cceEEEecccCCCceEEeccCCCCCCceEEEe
Confidence 4889999998 8889 6999999999999888643 334467676544
No 38
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=25.58 E-value=32 Score=37.15 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=48.6
Q ss_pred EEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhh-HHHHHH-HHHHHhccCCCchHH
Q 010393 3 YEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT-YNMLKV-SRHLFRWTKEIAYAD 80 (512)
Q Consensus 3 Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas-~nmlkl-~~~Lf~~tgd~~YaD 80 (512)
|.++||+.|++.|...=+.+..---..+|---..-.+...... ......++|.+ ...|.| -.+|-++|||++|.|
T Consensus 182 y~Lsgd~~lL~kA~dLadrLlpAFdTptgiP~~~vnl~~g~~~---~~~~~~~s~lAe~GSl~LEF~~LS~LTGd~~Y~~ 258 (538)
T 1x9d_A 182 YHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAH---PPRWTSDSTVAEVTSIQLEFRELSRLTGDKKFQE 258 (538)
T ss_dssp HHHHCCHHHHHHHHHHHHHHGGGGCSTTSCCCSEEETTTCCEE---CCTTCSEEEHHHHHSSHHHHHHHHHHHCCTHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeeecccccC---CCCcCCCceeccccceeeeHHHHHHHhCCcHHHH
Confidence 7789999999888887777753222233321111111100000 01112346655 222222 245889999999999
Q ss_pred HHHHHHhccccccC
Q 010393 81 YYERSLTNGVLGIQ 94 (512)
Q Consensus 81 ~~EralyN~vla~q 94 (512)
..+|+ ++.+...+
T Consensus 259 ~a~r~-~~~l~~~~ 271 (538)
T 1x9d_A 259 AVEKV-TQHIHGLS 271 (538)
T ss_dssp HHHHH-HHHHHTCS
T ss_pred HHHHH-HHHHHhcc
Confidence 99987 45555544
No 39
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A
Probab=24.71 E-value=71 Score=31.86 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=27.8
Q ss_pred CCCCceEEEeecc-CCCCCeEEEeecCCcceEEEE
Q 010393 406 AQGSSVFHLVAGL-DGGDRTVSLESETYKGCFVYT 439 (512)
Q Consensus 406 ~~~~s~f~~vpgl-~g~~g~vsles~~~pg~~l~~ 439 (512)
..+.++|++++ + +|.+|+|+|.++ ++|.||+.
T Consensus 91 ~~~ctlFkp~~-v~~~~~~~~~f~~v-q~g~~~~~ 123 (303)
T 1jlx_A 91 NWACTLFKPLY-VEEGNMKKVRLLHV-QLGHYTQN 123 (303)
T ss_dssp STTCCCEEEEE-SSTTCSSEEEEEET-TTTEECEE
T ss_pred cccccceEEEE-eccCCCceEEEEEE-ecCceEEe
Confidence 44678999998 7 788999999995 99999985
No 40
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=24.44 E-value=1.4e+02 Score=32.05 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHHHHHH
Q 010393 9 QLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERS 85 (512)
Q Consensus 9 ~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~Era 85 (512)
++++++|+..|+...++..-. +..+... ....|+.+.-.=+++.-+-.||+.|||.+|.++++..
T Consensus 268 ~~~L~~A~~~~~fa~~~~~~~---------~~~~~~~---~~~~Y~~~~~~Del~wAA~~Ly~aTgd~~Yl~~a~~~ 332 (537)
T 3gzk_A 268 SCCADAARRAYAWLGAHEMQP---------FHNPDGI---LTGEYGDAELRDELLWASCALLRMTGDSAWARVCEPL 332 (537)
T ss_dssp HHHHHHHHHHHHHHHTSCCCC---------CCCCTTC---CSCCCCCSCCHHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccc---------ccCCccc---ccCCcCCCccchHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 578999999999987654311 1111000 1122334445556888889999999999999999874
No 41
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius}
Probab=23.70 E-value=1.7e+02 Score=31.95 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=23.0
Q ss_pred EEEEEE-eCCCCeeeEEEE---eccCCccCCCcEEEECCeecCCC
Q 010393 192 VTLTFS-SKGSGLTTSLNL---RIPTWTSSNGAKATLNGQDLPLP 232 (512)
Q Consensus 192 V~ltv~-~~~~~~~ftL~l---RIP~Wa~~~~~~v~VNG~~~~~~ 232 (512)
++|+|+ ........+|+| |..+=.+ .++|+|||+++..+
T Consensus 491 ~~F~i~~v~tg~g~A~LRvg~gR~~g~s~--~p~V~vNG~~v~vP 533 (591)
T 4aw7_A 491 LSFPFTGIESGSGRASLRMSIGRPVSASK--KPVVKINGTAVSVP 533 (591)
T ss_dssp EEEEEEEECCCSEEEEEEEEEEEETTSCS--CCEEEETTEEECCC
T ss_pred eEEEEecccCCCceEEEEEEcCcCCCcCC--CCEEEECCEEeccC
Confidence 455554 111124444544 5555554 68999999998754
No 42
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=23.26 E-value=20 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=14.9
Q ss_pred CCCEEEEEeecCCCCEEEEE
Q 010393 234 PGNFLSVTKTWSSDDKLTIQ 253 (512)
Q Consensus 234 ~~gY~~I~R~W~~GD~I~l~ 253 (512)
.=||-.|+.+| +||+|+++
T Consensus 29 elgyndinvtw-dgdtvtve 47 (62)
T 2gjh_A 29 ELGYNDINVTW-DGDTVTVE 47 (62)
T ss_dssp HTTCCSCEEEE-CSSCEEEE
T ss_pred HhCcccceeEE-cCCEEEEE
Confidence 34788899999 58988775
No 43
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=22.43 E-value=21 Score=38.68 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=26.2
Q ss_pred eEEEcCChhHHHHHHHHHHHhhccceEeecCCCC
Q 010393 2 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSV 35 (512)
Q Consensus 2 ~Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~ 35 (512)
+|++|||+.|++.+-..++.+.++=-...||.++
T Consensus 446 lyR~TgD~~yre~gw~~f~ai~k~~rt~~Ggya~ 479 (538)
T 1x9d_A 446 LYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSS 479 (538)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcccccCCccc
Confidence 5899999999999999999997644444454654
No 44
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=22.32 E-value=1.4e+02 Score=31.15 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHHHHHH
Q 010393 9 QLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERS 85 (512)
Q Consensus 9 ~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~Era 85 (512)
++++++|+..|+...+++. ...... .|+.+--.=+++.-+-.||+.|||.+|.++++.-
T Consensus 178 ~~~L~~A~~~~~fa~~~~g-----~~~~~~-------------~Y~ss~~~DE~~WAAa~Ly~aTgd~~Yl~~a~~~ 236 (441)
T 1ia6_A 178 TKCLNAAKELYAMGKANQG-----VGNGQS-------------FYQATSFGDDLAWAATWLYTATNDSTYITDAEQF 236 (441)
T ss_dssp HHHHHHHHHHHHHHHHSCS-----CCCCTT-------------TSCCCCSHHHHHHHHHHHHHHHCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-----CCCCCC-------------CCCCCCchhHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3668999999999987762 111111 1222222335556678899999999999999974
No 45
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=22.29 E-value=1.7e+02 Score=27.00 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=30.7
Q ss_pred eeeEEEEeccCCc----cCCCcEEEECCeecCCCC-CCCEEEEE----------eecCCCCEEEEEeccee
Q 010393 203 LTTSLNLRIPTWT----SSNGAKATLNGQDLPLPS-PGNFLSVT----------KTWSSDDKLTIQLPLTL 258 (512)
Q Consensus 203 ~~ftL~lRIP~Wa----~~~~~~v~VNG~~~~~~~-~~gY~~I~----------R~W~~GD~I~l~Lpm~l 258 (512)
....|.++.|... +- +-.|.|||.-..... .++.+.++ ..|+.||.|-|+-.|++
T Consensus 20 ~~~~l~i~~~~~~~~~~~~-GdSIAvnGvCLTV~~~~~~~f~vdv~ETl~~T~Lg~l~~G~~VNLEral~~ 89 (186)
T 3ddy_A 20 DSQRHGIAFPEGMFQLVDV-DTVMLVNGCSNTVVRILGDMVYFDIDQALGTTTFDGLKEGDQVNLEIHPKF 89 (186)
T ss_dssp SCEEEEEECCTTTGGGCCT-TCEEEETTEEEEEEEEETTEEEEEECTTTTTSSGGGCCTTCEEEEECCC--
T ss_pred CcEEEEEEeChHHhccCCC-CCeEEEeeEEEEEEEEcCCEEEEEhHHhhhhCchhhcCCCCEEEECCCCCC
Confidence 4456777887652 22 678999998655432 23333333 24666666655554443
No 46
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=21.99 E-value=69 Score=25.51 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=22.2
Q ss_pred EEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecceeEEEe
Q 010393 221 KATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEA 262 (512)
Q Consensus 221 ~v~VNG~~~~~~~~~gY~~I~R~W~~GD~I~l~Lpm~lr~~~ 262 (512)
.|+|||+.+... + .-+.||+|+|.+|-+.....
T Consensus 27 ~V~VNg~~~~~~----~-----~v~~gd~I~v~~~~~~~~~~ 59 (92)
T 2k6p_A 27 AVWLNGSCAKAS----K-----EVKAGDTISLHYLKGIEEYT 59 (92)
T ss_dssp CCEETTEECCTT----C-----BCCTTCEEEECCSSCCEEEE
T ss_pred cEEECCEEcCCC----C-----CcCCCCEEEEEeCCceEEEE
Confidence 589999975321 1 12579999999877655543
No 47
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A*
Probab=21.91 E-value=1.6e+02 Score=27.79 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=35.3
Q ss_pred eeeEEEEecc-CCccC--CCcEEEECCeecCCCC-CCCEEEEE-----------eecCCCCEEEEEeccee
Q 010393 203 LTTSLNLRIP-TWTSS--NGAKATLNGQDLPLPS-PGNFLSVT-----------KTWSSDDKLTIQLPLTL 258 (512)
Q Consensus 203 ~~ftL~lRIP-~Wa~~--~~~~v~VNG~~~~~~~-~~gY~~I~-----------R~W~~GD~I~l~Lpm~l 258 (512)
....|.+++| .+.+. -+-.|.|||.-..... .++.+.++ ..|+.||.|-|+-.|++
T Consensus 20 ~~~~l~i~~~~~~~~~l~~g~SIAvnGvcLTV~~v~~~~F~vdvipETl~~T~Lg~l~~Gd~VNLEral~~ 90 (213)
T 1i8d_A 20 NFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKF 90 (213)
T ss_dssp SEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEETTEEEEEEEHHHHHHSGGGGCCTTCEEEEEECCBT
T ss_pred CcEEEEEEEChHHhccCCCCcEEEECCEEeeEEEEcCCEEEEEEeHHHHhhcccccCCCCCEEEeCcCCCC
Confidence 3456777887 34221 2678999998765432 34455554 34888998877766654
No 48
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=21.80 E-value=3.4e+02 Score=22.40 Aligned_cols=38 Identities=24% Similarity=0.150 Sum_probs=22.7
Q ss_pred EEEEEEEeCCCCeeeEEEEeccC-CccCCCcEEEECCeec
Q 010393 191 RVTLTFSSKGSGLTTSLNLRIPT-WTSSNGAKATLNGQDL 229 (512)
Q Consensus 191 ~V~ltv~~~~~~~~ftL~lRIP~-Wa~~~~~~v~VNG~~~ 229 (512)
.|+++|+.. ++...+|.+|.=. ........|.|||+.+
T Consensus 40 ~v~~~V~v~-~aG~Y~l~~rya~~~~~~~~~~l~VnG~~~ 78 (127)
T 2vzp_A 40 SVEWTVTVP-SAGTYDVVVRYANGTTTSRPLDFSVNGSIS 78 (127)
T ss_dssp EEEEEEEES-SSEEEEEEEEEECCSSSCCCEEEEETTEEE
T ss_pred EEEEEEEcC-CCCEEEEEEEEEcCCCCCeEEEEEECCEEe
Confidence 466666553 4566667777632 1111258899999874
No 49
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=20.14 E-value=1.5e+02 Score=32.46 Aligned_cols=66 Identities=5% Similarity=0.094 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHHhccCCCchHHHHHHHH
Q 010393 9 QLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL 86 (512)
Q Consensus 9 ~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~Eral 86 (512)
++++++|+..|+...+++.-. +..+.... ...|+++--.=+++.-+-.||+.|||.+|.++++...
T Consensus 312 ~~~L~~Ak~l~~fA~~~~~~~---------y~~~~~~~---~g~Y~ss~~~DEl~WAAawLy~ATgd~~Yl~~a~~~~ 377 (639)
T 1clc_A 312 EKCINAAKVSYEFLKNNPANV---------FANQSGFS---TGEYATVSDADDRLWAAAEMWETLGDEEYLRDFENRA 377 (639)
T ss_dssp HHHHHHHHHHHHHHHHCCSCC---------CCCCTTCC---SCCCCCSCSHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCc---------cCCCcccc---ccccCCCCcchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 366899999999988765310 11110000 1123333334567778889999999999999998743
No 50
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=20.09 E-value=49 Score=35.19 Aligned_cols=89 Identities=10% Similarity=0.102 Sum_probs=46.4
Q ss_pred EEEcCChhHHHHHHHHHHHhhccceEeecCCCCCCCCCCCcccccCCC-CCcccchhh-HHHHHH-HHHHHhccCCCchH
Q 010393 3 YEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLD-SNTEESCTT-YNMLKV-SRHLFRWTKEIAYA 79 (512)
Q Consensus 3 Ye~TGD~~y~~aa~~fwd~V~~~h~y~tGG~s~~E~f~~~~~l~~~l~-~~~~ETCas-~nmlkl-~~~Lf~~tgd~~Ya 79 (512)
|.++||+.|++.|...=+.+..---..+|---..-.+... .+.... ....++|.+ ...|.| -.+|-++|||++|.
T Consensus 118 y~Lsgd~~lL~kA~dLad~LlpAFdTptgiP~~~vnl~~g--~~~~~~~~~~~~s~lAe~gsl~LEF~~LS~lTGd~~Y~ 195 (478)
T 1nxc_A 118 YYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSG--IGRNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFA 195 (478)
T ss_dssp HHHHCCHHHHHHHHHHHHHHGGGGCSSSSCCCSEEETTTC--CEECCTTSGGGCEEHHHHTTCHHHHHHHHHHHCCTHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccc--cCCCCcccCCCCcccccccchhhhHHHHHHHHCChHHH
Confidence 7789999999888887777754222233211110001000 000000 112234433 222211 25688999999999
Q ss_pred HHHHHHHhccccccC
Q 010393 80 DYYERSLTNGVLGIQ 94 (512)
Q Consensus 80 D~~EralyN~vla~q 94 (512)
|..+|+ .+.+...+
T Consensus 196 ~~a~~~-~~~l~~~~ 209 (478)
T 1nxc_A 196 EKVMKI-RTVLNKLD 209 (478)
T ss_dssp HHHHHH-HHHHHHSC
T ss_pred HHHHHH-HHHHHhcC
Confidence 999986 45544433
Done!