BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010394
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 193/322 (59%), Gaps = 14/322 (4%)
Query: 31 VGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLL 90
+GV G +NL P+++VS + I +RLYD + L+AL + I+V++ VP + +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 91 AIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSS--APILLPAIESLYSALV 148
++ S+ + A WI +NV+AY+P IAVG+E+ +P S A +LPA+ ++Y+AL
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNEL---IPGSDLAQYILPAMRNIYNALS 117
Query: 149 AANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYY 208
+A L QIK+ST ++ +PPS F+ + + + P++QFL+ GAPL++N+YPY+
Sbjct: 118 SAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYF 177
Query: 209 VFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVMVL 268
+ N G + L +LF + +V + Y N+ DA++DA + +++ + +V V+
Sbjct: 178 SYTGNPGQISLPYALFT----ASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVV 233
Query: 269 VTESGWPSKGDSKEPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNEDLR 328
V+ESGWPS G E A+ NA TYN NLI+H+ GTP P YI+E+FNE+ +
Sbjct: 234 VSESGWPSAGGGAE--ASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQK 289
Query: 329 SPPISEANWGLFHANTTPVYLL 350
+ I E N+GLF+ N PVY +
Sbjct: 290 AGGI-EQNFGLFYPNKQPVYQI 310
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 179/325 (55%), Gaps = 14/325 (4%)
Query: 31 VGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLL 90
+GV G +NL S D++ I +R+Y ++ AL + I +I+ VPN L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 91 AIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSS--APILLPAIESLYSALV 148
A+ + + A W+ N+ ++P+ IAVG+EV S A + PA+E++Y+AL
Sbjct: 63 ALANP-SNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 149 AANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYY 208
+A L QIK+ST + ++ + +PP + F + S + P++ FL++ PL+ N+YPY+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 209 VFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVMVL 268
+ N VPL +LF + Y N+ DA++D+ YF+ + L ++ ++
Sbjct: 182 GHIDNTNAVPLSYALFNQQRRND--------TGYQNLFDALVDSMYFATEKLGGQNIEII 233
Query: 269 VTESGWPSKGDSKEPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNEDLR 328
V+ESGWPS+G P AT+ NA TY +NLI H+ +GTP P T Y++ +F+E+ +
Sbjct: 234 VSESGWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 329 SPPISEANWGLFHANTTPVYLLHVS 353
SE ++GLF+ + P Y L+ +
Sbjct: 291 KGEASEKHFGLFNPDQRPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 178/325 (54%), Gaps = 14/325 (4%)
Query: 31 VGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLL 90
+GV G +NL S D++ I +R+Y ++ AL + I +I+ VPN L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 91 AIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSS--APILLPAIESLYSALV 148
A+ + + A W+ N+ ++P+ IAVG+EV S A + PA+E++Y+AL
Sbjct: 63 ALANP-SNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 149 AANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYY 208
+A L QIK+ST + ++ + +PP + F + S + P++ FL++ PL+ N+YPY+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 209 VFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVMVL 268
+ N VPL +LF + Y N+ DA++D+ YF+ + L ++ ++
Sbjct: 182 GHIDNTNAVPLSYALFNQQRRND--------TGYQNLFDALVDSMYFATEKLGGQNIEII 233
Query: 269 VTESGWPSKGDSKEPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNEDLR 328
V+ SGWPS+G P AT+ NA TY +NLI H+ +GTP P T Y++ +F+E+ +
Sbjct: 234 VSASGWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 329 SPPISEANWGLFHANTTPVYLLHVS 353
SE ++GLF+ + P Y L+ +
Sbjct: 291 KGEASEKHFGLFNPDQRPKYQLNFN 315
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 177/321 (55%), Gaps = 16/321 (4%)
Query: 31 VGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLL 90
+GV G +NL S +D+V + + I +R+Y AD L AL + I +I+ + N+QL
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 91 AIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAA 150
I +S + AASW+ NV YYP I IA G+EV S +LPA+ +L +A ++A
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQS---ILPAMRNL-NAALSA 116
Query: 151 NLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYYVF 210
IK+ST + + FPPS F + M + + L+ TGAPL+ N+YPY+ +
Sbjct: 117 AGLGAIKVSTSIRFDEVANSFPPSAGVFKNAY---MTDVARLLASTGAPLLANVYPYFAY 173
Query: 211 MQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVMVLVT 270
N G + L+ + F+P T + D N L YT++ DAM+DA Y +++ V V+V+
Sbjct: 174 RDNPGSISLNYATFQPGTTVR---DQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVS 230
Query: 271 ESGWPSKGDSKEPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNEDLRSP 330
ESGWPS G A+ NA TYN LI H+ GTP E YI+ +FNE+ ++
Sbjct: 231 ESGWPSAGGFA---ASAGNARTYNQGLINHV--GGGTPKKREALE-TYIFAMFNENQKTG 284
Query: 331 PISEANWGLFHANTTPVYLLH 351
+E ++GLF+ + +P Y +
Sbjct: 285 DATERSFGLFNPDKSPAYNIQ 305
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 184/326 (56%), Gaps = 14/326 (4%)
Query: 31 VGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLL 90
VGV G +NL +++++ + IT +R+YD + +L+AL + I +I+ VPN+ L
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 91 AIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSA---PILLPAIESLYSAL 147
++ ++ + A SW+ KNV ++ IAVG+E+ +A +LPA+ +++ A+
Sbjct: 62 SL-TNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 148 VAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPY 207
+A L QIK+ST +++ + +PPS F + S + P+++FLS +PL+ N+YPY
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPY 180
Query: 208 YVFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVMV 267
+ + N P D SL L S +V + Y N+ DA +DA Y +++ + + V
Sbjct: 181 FTYAGN----PRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEV 236
Query: 268 LVTESGWPSKGDSKEPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNEDL 327
+V+ESGWPS G AT DN TY SNLI+H+ + GTP P+ Y++ +F+E+
Sbjct: 237 VVSESGWPSAGAFA---ATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDENK 291
Query: 328 RSPPISEANWGLFHANTTPVYLLHVS 353
+ P + E ++GLF N Y L+ S
Sbjct: 292 KQPEV-EKHFGLFFPNKWQKYNLNFS 316
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 172/318 (54%), Gaps = 16/318 (5%)
Query: 31 VGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLL 90
+GV G +NL + + +VS + I +RLY + L+A+ T I V+V PN+ L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 91 AIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAA 150
+ +S AASW+ N+ A YP+ + VG+EV + L+PA+++++ ALVAA
Sbjct: 61 NLAASPAAAASWVKSNIQA-YPKVSFRYVCVGNEVAGGATRN---LVPAMKNVHGALVAA 116
Query: 151 NLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYYVF 210
L IK++T + +I+ PPS F ++ M P++QFL++T APLM N+YPY +
Sbjct: 117 GL-GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAW 175
Query: 211 MQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVMVLVT 270
N + + +LF + V + Y N+ D +DA Y +M + V ++V+
Sbjct: 176 AYNPSAMDMGYALFN----ASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVS 231
Query: 271 ESGWPSKGDSKEPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNEDLRSP 330
ESGWPS G + AT NA YN +LI H+ GTP HP YI+ +FNE+ +
Sbjct: 232 ESGWPSGGGTA---ATPANARFYNQHLINHV--GRGTPRHPGAIE-TYIFAMFNENQKDS 285
Query: 331 PISEANWGLFHANTTPVY 348
+ E NWGLF+ N VY
Sbjct: 286 GV-EQNWGLFYPNMQHVY 302
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 367 TYCIAMDGVDTKTLQAALDWACGPGRANCSDIQPGEPCYQPNNVKSHASYAFDSYYHEQG 426
++C+ GV L +++AC G +C IQPG C++PN VK+HA+Y + YY G
Sbjct: 12 SWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70
Query: 427 KTSGSCDFKGVAMITTTDPSHGSCIFP 453
+ S +CDF A +T T+PS+G+C FP
Sbjct: 71 RNSWNCDFSQTATLTNTNPSYGACNFP 97
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 134 PILLPAIESLYSALVAANLHTQIKISTPHAASIILD 169
PIL+ + LY A+ A LH + + H AS++ D
Sbjct: 52 PILVLLVARLYGAVTPATLHAAVSLELLHTASLVHD 87
>pdb|2W22|A Chain A, Activation Mechanism Of Bacterial Thermoalkalophilic
Lipases
Length = 389
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 409 NVKSHASYAFDSYYHEQGKTSGSCDFKGVAMITTTDPSHGSCIFPGSKKVSNKTKAVVNS 468
++ +FD Y+ K + T+TD + PG++K++ +A N+
Sbjct: 213 GLRRQPGESFDHYFER---------LKRSPVWTSTDTARYDLSIPGAEKLNQWVQASPNT 263
Query: 469 TQISGAADRLRFISLRGN---QISANAVAFSILLFIPFM 504
+S + +R +L GN ++ N AFS ++ PF+
Sbjct: 264 YYLSFSTERTHRGALTGNYYPELGMN--AFSAVVCAPFL 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,906,441
Number of Sequences: 62578
Number of extensions: 618238
Number of successful extensions: 1429
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 10
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)