Query 010394
Match_columns 511
No_of_seqs 291 out of 1633
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 00:01:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.2E-86 2.5E-91 680.4 21.3 310 31-352 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.4E-41 3.1E-46 332.1 23.5 253 27-344 42-305 (305)
3 smart00768 X8 Possibly involve 100.0 8.4E-29 1.8E-33 208.2 8.0 85 367-452 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.9 8E-23 1.7E-27 169.1 6.2 73 367-439 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.6 3.8E-14 8.2E-19 144.0 14.5 237 30-346 29-295 (314)
6 PF07745 Glyco_hydro_53: Glyco 98.9 1.3E-07 2.9E-12 98.3 21.5 240 45-347 26-326 (332)
7 COG3867 Arabinogalactan endo-1 98.3 1.5E-05 3.3E-10 80.7 13.7 251 45-350 65-388 (403)
8 PF00150 Cellulase: Cellulase 98.1 0.00028 6.2E-09 70.0 18.5 129 30-160 10-172 (281)
9 PRK10150 beta-D-glucuronidase; 97.8 0.0059 1.3E-07 68.7 24.2 240 48-350 318-585 (604)
10 smart00633 Glyco_10 Glycosyl h 97.3 0.03 6.4E-07 56.2 19.5 77 253-347 171-248 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.0 0.34 7.3E-06 48.3 16.2 167 114-346 64-232 (239)
12 TIGR03356 BGL beta-galactosida 94.8 2.3 5E-05 46.1 19.0 45 45-89 56-119 (427)
13 PF02836 Glyco_hydro_2_C: Glyc 94.6 0.44 9.6E-06 48.7 12.2 116 30-154 17-152 (298)
14 PRK09525 lacZ beta-D-galactosi 89.4 18 0.00039 43.8 18.4 96 31-126 353-464 (1027)
15 PRK10340 ebgA cryptic beta-D-g 88.3 20 0.00044 43.4 17.9 97 31-127 337-452 (1021)
16 PRK09936 hypothetical protein; 83.1 24 0.00051 36.6 12.9 135 10-148 5-170 (296)
17 PF02449 Glyco_hydro_42: Beta- 76.0 7.3 0.00016 41.2 7.0 83 45-127 12-140 (374)
18 PF00232 Glyco_hydro_1: Glycos 74.1 2.4 5.1E-05 46.4 2.8 116 45-164 60-223 (455)
19 cd02875 GH18_chitobiase Chitob 73.8 17 0.00038 38.4 9.2 100 56-158 55-156 (358)
20 smart00481 POLIIIAc DNA polyme 69.7 16 0.00034 28.6 6.0 43 43-85 15-62 (67)
21 PF01229 Glyco_hydro_39: Glyco 65.8 1.5E+02 0.0033 32.6 14.7 248 49-346 46-349 (486)
22 PF00925 GTP_cyclohydro2: GTP 61.9 11 0.00025 35.6 4.4 37 48-84 131-167 (169)
23 PF14488 DUF4434: Domain of un 56.7 1.1E+02 0.0023 29.0 9.9 108 46-158 23-159 (166)
24 TIGR01579 MiaB-like-C MiaB-lik 55.3 1.4E+02 0.003 32.0 11.9 61 131-210 270-330 (414)
25 TIGR00505 ribA GTP cyclohydrol 54.4 20 0.00043 34.7 4.7 33 49-81 131-163 (191)
26 PRK00393 ribA GTP cyclohydrola 54.2 20 0.00042 34.9 4.6 33 49-81 134-166 (197)
27 COG4782 Uncharacterized protei 51.6 51 0.0011 35.3 7.4 60 242-304 125-187 (377)
28 PF03662 Glyco_hydro_79n: Glyc 50.0 62 0.0014 34.0 7.8 81 68-149 112-202 (319)
29 cd04734 OYE_like_3_FMN Old yel 48.2 3.5E+02 0.0076 28.4 14.4 130 170-307 63-207 (343)
30 cd04743 NPD_PKS 2-Nitropropane 48.1 1.2E+02 0.0025 32.0 9.5 95 29-141 56-151 (320)
31 PF03032 Brevenin: Brevenin/es 47.8 12 0.00026 28.2 1.5 18 5-22 4-21 (46)
32 PRK13511 6-phospho-beta-galact 47.4 48 0.001 36.5 6.9 46 45-90 56-120 (469)
33 PRK14326 (dimethylallyl)adenos 47.2 4.1E+02 0.009 29.6 14.2 58 131-207 289-346 (502)
34 PRK12485 bifunctional 3,4-dihy 44.9 26 0.00056 37.6 4.1 32 49-81 331-362 (369)
35 PLN02814 beta-glucosidase 44.8 65 0.0014 36.0 7.4 46 45-90 79-143 (504)
36 PRK14334 (dimethylallyl)adenos 44.5 1.3E+02 0.0028 32.7 9.6 58 131-207 269-326 (440)
37 cd00641 GTP_cyclohydro2 GTP cy 43.6 36 0.00077 32.9 4.6 33 49-81 133-165 (193)
38 PLN00196 alpha-amylase; Provis 43.0 1.1E+02 0.0023 33.6 8.6 56 30-85 28-113 (428)
39 PF14587 Glyco_hydr_30_2: O-Gl 42.8 2.3E+02 0.0049 30.7 10.7 100 68-168 108-234 (384)
40 PRK14019 bifunctional 3,4-dihy 42.3 30 0.00064 37.1 4.1 33 49-82 328-360 (367)
41 PLN02998 beta-glucosidase 41.6 53 0.0012 36.6 6.1 45 46-90 85-148 (497)
42 PF06180 CbiK: Cobalt chelatas 41.3 2.3E+02 0.005 29.0 10.2 141 41-211 56-209 (262)
43 cd02872 GH18_chitolectin_chito 40.4 96 0.0021 32.4 7.6 80 71-151 62-151 (362)
44 PLN02849 beta-glucosidase 39.4 95 0.0021 34.7 7.7 45 46-90 82-145 (503)
45 COG2730 BglC Endoglucanase [Ca 38.0 2.2E+02 0.0047 30.7 10.0 105 46-152 76-220 (407)
46 COG3934 Endo-beta-mannanase [C 37.2 1.5E+02 0.0033 33.0 8.4 64 100-163 123-186 (587)
47 TIGR03632 bact_S11 30S ribosom 36.8 79 0.0017 27.8 5.3 36 46-81 50-90 (108)
48 PRK14328 (dimethylallyl)adenos 36.7 4.5E+02 0.0098 28.5 12.3 59 131-208 279-337 (439)
49 PRK09314 bifunctional 3,4-dihy 35.9 47 0.001 35.3 4.3 34 48-81 300-334 (339)
50 PRK09318 bifunctional 3,4-dihy 35.6 51 0.0011 35.6 4.6 37 49-85 320-356 (387)
51 PRK08815 GTP cyclohydrolase; P 35.1 52 0.0011 35.4 4.6 37 49-85 305-341 (375)
52 PF14871 GHL6: Hypothetical gl 34.1 99 0.0021 28.2 5.7 42 44-85 1-65 (132)
53 PRK14327 (dimethylallyl)adenos 33.8 6.2E+02 0.013 28.4 12.9 60 131-209 344-403 (509)
54 PRK09311 bifunctional 3,4-dihy 33.7 56 0.0012 35.5 4.6 34 48-81 338-371 (402)
55 PLN02831 Bifunctional GTP cycl 33.6 55 0.0012 36.1 4.6 36 49-84 373-408 (450)
56 cd02874 GH18_CFLE_spore_hydrol 33.4 1E+02 0.0023 31.5 6.4 84 66-152 47-138 (313)
57 PRK09319 bifunctional 3,4-dihy 33.1 58 0.0012 36.8 4.7 38 48-85 342-379 (555)
58 COG1433 Uncharacterized conser 32.7 91 0.002 28.2 5.1 40 46-85 55-94 (121)
59 TIGR03628 arch_S11P archaeal r 32.0 1E+02 0.0023 27.6 5.3 36 46-81 53-101 (114)
60 cd01543 PBP1_XylR Ligand-bindi 31.5 2.3E+02 0.0051 27.3 8.3 129 45-193 97-238 (265)
61 PF07172 GRP: Glycine rich pro 31.1 28 0.00061 30.1 1.5 19 1-20 1-20 (95)
62 cd06418 GH25_BacA-like BacA is 31.1 5.2E+02 0.011 25.4 11.3 107 43-153 21-143 (212)
63 cd06545 GH18_3CO4_chitinase Th 30.3 1E+02 0.0022 30.7 5.6 81 68-152 50-133 (253)
64 TIGR01125 MiaB-like tRNA modif 30.2 4.2E+02 0.0092 28.6 10.7 61 131-210 267-327 (430)
65 PF13721 SecD-TM1: SecD export 29.8 1.4E+02 0.0031 25.9 5.7 51 12-63 16-66 (101)
66 PRK14338 (dimethylallyl)adenos 29.8 2.7E+02 0.0059 30.5 9.2 135 44-208 185-345 (459)
67 PRK13347 coproporphyrinogen II 29.5 93 0.002 34.0 5.5 21 133-153 262-282 (453)
68 COG0621 MiaB 2-methylthioadeni 29.3 2.3E+02 0.0051 31.2 8.4 127 30-207 195-334 (437)
69 KOG1412 Aspartate aminotransfe 28.2 80 0.0017 33.4 4.4 143 35-196 188-371 (410)
70 PRK07198 hypothetical protein; 28.0 52 0.0011 35.6 3.1 37 49-85 338-375 (418)
71 PF05990 DUF900: Alpha/beta hy 27.9 1.6E+02 0.0034 29.2 6.4 44 257-303 42-88 (233)
72 PF13377 Peripla_BP_3: Peripla 27.8 2.1E+02 0.0045 25.2 6.8 122 49-193 1-134 (160)
73 PF00834 Ribul_P_3_epim: Ribul 27.3 5.2E+02 0.011 25.2 9.8 99 44-158 68-171 (201)
74 PRK14330 (dimethylallyl)adenos 27.2 3.6E+02 0.0079 29.2 9.6 74 116-208 250-330 (434)
75 PRK09607 rps11p 30S ribosomal 27.1 1.4E+02 0.003 27.5 5.3 36 46-81 60-108 (132)
76 PRK14339 (dimethylallyl)adenos 27.0 4.9E+02 0.011 28.2 10.5 57 132-207 263-319 (420)
77 PF00411 Ribosomal_S11: Riboso 27.0 1.1E+02 0.0024 26.9 4.6 36 47-82 51-91 (110)
78 PF02811 PHP: PHP domain; Int 26.5 1.3E+02 0.0028 27.1 5.2 44 43-86 16-64 (175)
79 cd00598 GH18_chitinase-like Th 26.4 1.6E+02 0.0034 27.8 5.9 84 68-152 53-142 (210)
80 CHL00041 rps11 ribosomal prote 25.7 1.6E+02 0.0034 26.3 5.3 35 47-81 64-103 (116)
81 TIGR02495 NrdG2 anaerobic ribo 25.5 5.5E+02 0.012 23.9 11.8 42 42-83 46-96 (191)
82 TIGR00640 acid_CoA_mut_C methy 25.3 2E+02 0.0044 26.0 6.1 45 43-87 40-96 (132)
83 cd02803 OYE_like_FMN_family Ol 25.3 7.4E+02 0.016 25.3 13.1 161 139-306 34-206 (327)
84 PRK14336 (dimethylallyl)adenos 24.8 4E+02 0.0087 28.8 9.3 59 131-208 256-314 (418)
85 COG1671 Uncharacterized protei 24.1 1.3E+02 0.0029 28.2 4.7 50 60-110 2-67 (150)
86 smart00636 Glyco_18 Glycosyl h 24.0 2.4E+02 0.0053 28.9 7.2 80 70-150 57-142 (334)
87 COG3325 ChiA Chitinase [Carboh 23.9 4.9E+02 0.011 28.7 9.5 115 68-207 115-251 (441)
88 PRK05309 30S ribosomal protein 23.7 1.8E+02 0.0039 26.5 5.4 35 47-81 68-107 (128)
89 PRK14332 (dimethylallyl)adenos 23.1 1E+03 0.022 26.1 12.9 138 43-210 183-343 (449)
90 COG0807 RibA GTP cyclohydrolas 22.8 1.5E+02 0.0033 29.0 5.0 39 49-87 133-171 (193)
91 PF04909 Amidohydro_2: Amidohy 22.0 2.1E+02 0.0046 27.6 6.1 54 136-204 83-137 (273)
92 PLN03059 beta-galactosidase; P 21.8 1.4E+03 0.031 27.4 15.2 114 47-162 63-222 (840)
93 TIGR00089 RNA modification enz 21.6 8.6E+02 0.019 26.1 11.1 136 43-208 168-329 (429)
94 cd00854 NagA N-acetylglucosami 21.5 1.4E+02 0.0031 31.5 5.0 43 43-86 146-194 (374)
95 PF01055 Glyco_hydro_31: Glyco 21.5 2.7E+02 0.0059 29.9 7.3 133 133-322 42-178 (441)
96 TIGR01233 lacG 6-phospho-beta- 21.1 1.9E+02 0.0042 31.9 6.0 46 45-90 55-119 (467)
97 TIGR02026 BchE magnesium-proto 20.9 9.3E+02 0.02 26.6 11.4 94 43-146 222-335 (497)
98 cd04723 HisA_HisF Phosphoribos 20.8 4E+02 0.0087 26.3 7.8 69 44-128 36-113 (233)
99 PRK14114 1-(5-phosphoribosyl)- 20.7 4E+02 0.0086 26.7 7.7 70 43-128 30-108 (241)
100 cd02932 OYE_YqiM_FMN Old yello 20.3 9.7E+02 0.021 24.8 14.0 131 170-306 63-219 (336)
101 PRK14337 (dimethylallyl)adenos 20.3 4.4E+02 0.0095 28.8 8.6 135 43-207 177-338 (446)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.2e-86 Score=680.37 Aligned_cols=310 Identities=47% Similarity=0.820 Sum_probs=256.3
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecCChHHHHHHHhCCCEEEEecCCchhhhhcCchHHHHHHHhhhcccc
Q 010394 31 VGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAY 110 (511)
Q Consensus 31 ~GvnYg~~~~nlps~~~vv~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~vGV~n~~l~~la~~~~~A~~Wv~~~V~~y 110 (511)
||||||+.++|+|+|.+++++||+++|++|||||+|+++|+|+++|||+|++||+|+++.++++++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHH
Q 010394 111 YPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLL 190 (511)
Q Consensus 111 ~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~l 190 (511)
+|.++|++|+||||++...... .|||||+++|++|+++||+++|||+|+++++++..+||||+|.|++++.++|.+++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l 158 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA--YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLL 158 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce--eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHH
Confidence 9999999999999999764333 89999999999999999998999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcccccCCccccccCCCCccCccccccCCCCCCceecCCCccccchHHHHHHHHHHHHHHhhCCCCceEEEe
Q 010394 191 QFLSKTGAPLMMNLYPYYVFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVMVLVT 270 (511)
Q Consensus 191 dfL~~t~sp~~vNiyPyf~~~~~~~~i~ldyAlF~~~~~~~~~~d~~~~~~Y~Nlfda~vDav~~am~k~g~~~~~VvVs 270 (511)
+||.++++|||+|+||||+|..+|..++||||+|+ ++..+.|+ +++|+||||+|+|++++||+|+|+++++|+|+
T Consensus 159 ~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~---~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ 233 (310)
T PF00332_consen 159 KFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQ---PNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVG 233 (310)
T ss_dssp HHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT----SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEE
T ss_pred HHhhccCCCceeccchhhhccCCcccCCccccccc---cccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEe
Confidence 99999999999999999999999999999999999 46666665 78999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEeccCCCCCCCcCCCceeeeecCCCceEee
Q 010394 271 ESGWPSKGDSKEPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNEDLRSPPISEANWGLFHANTTPVYLL 350 (511)
Q Consensus 271 ETGWPS~G~~~~~~as~~NA~~y~~~li~~~~~~~GTP~rpg~~~~~yiF~lFDE~~K~g~~~E~~wGLf~~d~tpky~l 350 (511)
||||||+|+ .+|+++||++|++++++|+. .|||+||+..+++||||||||+||+++++|||||||++||+|||++
T Consensus 234 ETGWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~ 308 (310)
T PF00332_consen 234 ETGWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDL 308 (310)
T ss_dssp EE---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS--
T ss_pred ccccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCC
Confidence 999999999 67999999999999999996 7999999999999999999999999988999999999999999999
Q ss_pred ee
Q 010394 351 HV 352 (511)
Q Consensus 351 ~~ 352 (511)
+|
T Consensus 309 ~f 310 (310)
T PF00332_consen 309 DF 310 (310)
T ss_dssp --
T ss_pred CC
Confidence 86
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=332.09 Aligned_cols=253 Identities=19% Similarity=0.301 Sum_probs=201.3
Q ss_pred CCCceeEEecCCCCC--CCCHHHHHHHHHhC-CC-CeEEEecCCh----HHHHHHHhCCCEEEEecCCchhhhhcCchHH
Q 010394 27 KEPFVGVNIGTDVSN--LLSPTDLVSFLQVQ-KI-THIRLYDADP----DLLKALAKTKIRVIVSVPNNQLLAIGSSNTT 98 (511)
Q Consensus 27 ~~~~~GvnYg~~~~n--lps~~~vv~llk~~-~i-~~VRlYd~d~----~vL~A~a~tgikV~vGV~n~~l~~la~~~~~ 98 (511)
..+..+|+||++.+| +|+.+|+..+|... .+ ..||+|.+|| +|++|+...|+||++|||..+-.+ ..
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~-----~~ 116 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIH-----DA 116 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchh-----hh
Confidence 445689999999987 68999997665432 22 3999999886 688999999999999999643221 22
Q ss_pred HHHHHhhhccccCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccc
Q 010394 99 AASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFF 178 (511)
Q Consensus 99 A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F 178 (511)
.++-+...+++++..+.|++|.||||+|+|.+.++++|+.+|..+|.+|+++|+++ ||+|++.|.++.+.
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g--pV~T~dsw~~~~~n-------- 186 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG--PVTTVDSWNVVINN-------- 186 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC--ceeecccceeeeCC--------
Confidence 23345677888888889999999999999999999999999999999999999975 78999999988752
Q ss_pred cchhhhhhHHHHHHHhhcCCCcccccCCccccccCCCCccCccccccCCCCCCceecCCCccccchHHHHHHHHHHHHHH
Q 010394 179 NQSLSSVMLPLLQFLSKTGAPLMMNLYPYYVFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMK 258 (511)
Q Consensus 179 ~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~i~ldyAlF~~~~~~~~~~d~~~~~~Y~Nlfda~vDav~~am~ 258 (511)
+.+++..||+ |+|.||||+...-. .+. ++ ++-.|+.-++.+.
T Consensus 187 -----p~l~~~SDfi-------a~N~~aYwd~~~~a-------------------~~~-----~~-f~~~q~e~vqsa~- 228 (305)
T COG5309 187 -----PELCQASDFI-------AANAHAYWDGQTVA-------------------NAA-----GT-FLLEQLERVQSAC- 228 (305)
T ss_pred -----hHHhhhhhhh-------hcccchhccccchh-------------------hhh-----hH-HHHHHHHHHHHhc-
Confidence 4456666665 89999999853211 111 22 3445566655542
Q ss_pred hhCCCCceEEEeeeccCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEeccCCCCCCC--cCCC
Q 010394 259 NLNITDVMVLVTESGWPSKGDSK-EPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNEDLRSPP--ISEA 335 (511)
Q Consensus 259 k~g~~~~~VvVsETGWPS~G~~~-~~~as~~NA~~y~~~li~~~~~~~GTP~rpg~~~~~yiF~lFDE~~K~g~--~~E~ 335 (511)
-.+++++|+||||||+|..+ ++.||++||..|.|++++.+++ .++++|+||+|||+||... .+|+
T Consensus 229 ---g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEk 296 (305)
T COG5309 229 ---GTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEK 296 (305)
T ss_pred ---CCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhh
Confidence 24599999999999999987 5789999999999999998864 3689999999999999643 5899
Q ss_pred ceeeeecCC
Q 010394 336 NWGLFHANT 344 (511)
Q Consensus 336 ~wGLf~~d~ 344 (511)
|||+++.|+
T Consensus 297 ywGv~~s~~ 305 (305)
T COG5309 297 YWGVLSSDR 305 (305)
T ss_pred ceeeeccCC
Confidence 999998764
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.95 E-value=8.4e-29 Score=208.20 Aligned_cols=85 Identities=64% Similarity=1.193 Sum_probs=82.8
Q ss_pred eeeEEcCCCChHHHHHHhhcccCCCCCCCCccCCCCCCCCCCCcchhhhHHHhHHHHHhCCCCCCCCCCCceEEEecCCC
Q 010394 367 TYCIAMDGVDTKTLQAALDWACGPGRANCSDIQPGEPCYQPNNVKSHASYAFDSYYHEQGKTSGSCDFKGVAMITTTDPS 446 (511)
Q Consensus 367 ~~CV~~~~~~~~~l~~~ld~aCg~~~~dC~~I~~~g~c~~p~t~~~~aSya~N~Yyq~~~~~~~aCdF~G~a~i~~~dps 446 (511)
+|||+|+++++++||++||||||++ +||++|++||+||+||++++|||||||+|||++++..++|||+|+|+++++|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccc
Q 010394 447 HGSCIF 452 (511)
Q Consensus 447 ~~~C~~ 452 (511)
+++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999975
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.87 E-value=8e-23 Score=169.11 Aligned_cols=73 Identities=45% Similarity=0.892 Sum_probs=63.0
Q ss_pred eeeEEcCCCChHHHHHHhhcccCCCCCCCCccCCCCC-----CCCCCCcchhhhHHHhHHHHHhCCCCCCCCCCCceE
Q 010394 367 TYCIAMDGVDTKTLQAALDWACGPGRANCSDIQPGEP-----CYQPNNVKSHASYAFDSYYHEQGKTSGSCDFKGVAM 439 (511)
Q Consensus 367 ~~CV~~~~~~~~~l~~~ld~aCg~~~~dC~~I~~~g~-----c~~p~t~~~~aSya~N~Yyq~~~~~~~aCdF~G~a~ 439 (511)
+|||+++++++++|+++|||||+++++||++|+++++ .|++|+.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 5999999999999999999999998899999999998 888888999999999999999999999999999996
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.56 E-value=3.8e-14 Score=144.04 Aligned_cols=237 Identities=21% Similarity=0.306 Sum_probs=125.4
Q ss_pred ceeEEecCCCC-------CCC-CHH---HHHHHHHhCCCCeEEEecCCh-----HHHHHHHhCCCEEEEecCCchhhhhc
Q 010394 30 FVGVNIGTDVS-------NLL-SPT---DLVSFLQVQKITHIRLYDADP-----DLLKALAKTKIRVIVSVPNNQLLAIG 93 (511)
Q Consensus 30 ~~GvnYg~~~~-------nlp-s~~---~vv~llk~~~i~~VRlYd~d~-----~vL~A~a~tgikV~vGV~n~~l~~la 93 (511)
..||.|-+-++ |.. .++ +.+.+||++|++.||+|..|| ++|++|++.||.|++.|.......-.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r 108 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINR 108 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--T
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccC
Confidence 36999998776 322 222 346789999999999999986 79999999999999999754221111
Q ss_pred CchHHHHHH-------HhhhccccCCCceEEEEEeccccccCCC--CChhhHHHHHHHHHHHHHhCCCCCeeEEeccccc
Q 010394 94 SSNTTAASW-------IGKNVIAYYPETLITAIAVGDEVLTTVP--SSAPILLPAIESLYSALVAANLHTQIKISTPHAA 164 (511)
Q Consensus 94 ~~~~~A~~W-------v~~~V~~y~p~~~I~~I~VGNEvl~~~~--~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~ 164 (511)
.++ +..| ...-|..+...+|+-+..+|||+++... ..++.+..++|++|+.+++.+++ +|+|+.+.+
T Consensus 109 ~~P--~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaa- 184 (314)
T PF03198_consen 109 SDP--APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAA- 184 (314)
T ss_dssp TS--------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCC--cCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEcc-
Confidence 222 2344 2223444445589999999999997643 35679999999999999999986 499997653
Q ss_pred cccccCCCCCcccccchhhhhhHHHHHHHhhcC-----CCcccccCCccccccCCCCccCccccccCCCCCCceecCCCc
Q 010394 165 SIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTG-----APLMMNLYPYYVFMQNKGVVPLDNSLFKPLTPSKEMVDPNTL 239 (511)
Q Consensus 165 ~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~-----sp~~vNiyPyf~~~~~~~~i~ldyAlF~~~~~~~~~~d~~~~ 239 (511)
++ ...-.++.+||.+.. +.|++|.| +|+++. .|+ .+
T Consensus 185 D~----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y---~WCg~S--------tf~----~S-------- 225 (314)
T PF03198_consen 185 DD----------------AEIRQDLANYLNCGDDDERIDFFGLNSY---EWCGDS--------TFE----TS-------- 225 (314)
T ss_dssp ------------------TTTHHHHHHHTTBTT-----S-EEEEE-------SS----------HH----HH--------
T ss_pred CC----------------hhHHHHHHHHhcCCCcccccceeeeccc---eecCCC--------ccc----cc--------
Confidence 11 122345677777533 58899998 777543 232 11
Q ss_pred cccchHHHHHHHHHHHHHHhhCCCCceEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEE
Q 010394 240 LHYTNVLDAMIDAAYFSMKNLNITDVMVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYI 319 (511)
Q Consensus 240 ~~Y~Nlfda~vDav~~am~k~g~~~~~VvVsETGWPS~G~~~~~~as~~NA~~y~~~li~~~~~~~GTP~rpg~~~~~yi 319 (511)
.|..+ ....+ ++ .+||+.+|.|..+... |+|.+ +..+.+..+|....| ..+
T Consensus 226 -Gy~~l--------~~~f~--~y-~vPvffSEyGCn~~~p-----------R~f~e--v~aly~~~Mt~v~SG----Giv 276 (314)
T PF03198_consen 226 -GYDRL--------TKEFS--NY-SVPVFFSEYGCNTVTP-----------RTFTE--VPALYSPEMTDVWSG----GIV 276 (314)
T ss_dssp -SHHHH--------HHHHT--T--SS-EEEEEE---SSSS--------------TH--HHHHTSHHHHTTEEE----EEE
T ss_pred -cHHHH--------HHHhh--CC-CCCeEEcccCCCCCCC-----------ccchH--hHHhhCccchhheec----eEE
Confidence 14322 22233 33 5999999999987542 44433 444444344444444 678
Q ss_pred EEeccCCCCCCCcCCCceeeeecCCCc
Q 010394 320 YELFNEDLRSPPISEANWGLFHANTTP 346 (511)
Q Consensus 320 F~lFDE~~K~g~~~E~~wGLf~~d~tp 346 (511)
||.|.| +.+|||...++..
T Consensus 277 YEy~~e--------~n~yGlV~~~~~~ 295 (314)
T PF03198_consen 277 YEYFQE--------ANNYGLVEISGDG 295 (314)
T ss_dssp S-SB----------SSS--SEEE-TTS
T ss_pred EEEecc--------CCceEEEEEcCCC
Confidence 898887 5789999876554
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.93 E-value=1.3e-07 Score=98.32 Aligned_cols=240 Identities=17% Similarity=0.228 Sum_probs=119.4
Q ss_pred HHHHHHHHHhCCCCeEEE--e-cC------C-h---HHHHHHHhCCCEEEEecCCch------------------hhhhc
Q 010394 45 PTDLVSFLQVQKITHIRL--Y-DA------D-P---DLLKALAKTKIRVIVSVPNNQ------------------LLAIG 93 (511)
Q Consensus 45 ~~~vv~llk~~~i~~VRl--Y-d~------d-~---~vL~A~a~tgikV~vGV~n~~------------------l~~la 93 (511)
..++.++||..|++.||| | ++ | . ...+.+++.|++|+|..--.| +..++
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 367899999999986655 4 21 1 1 344566789999999883211 11111
Q ss_pred CchHHHHHHHhhhccccC-CCceEEEEEeccccccC------CCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccc
Q 010394 94 SSNTTAASWIGKNVIAYY-PETLITAIAVGDEVLTT------VPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASI 166 (511)
Q Consensus 94 ~~~~~A~~Wv~~~V~~y~-p~~~I~~I~VGNEvl~~------~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~v 166 (511)
++..++.+.-+...- -+..+..|-||||+-.. .....+.+...++.-.+++|+.+-+ +||-.-..
T Consensus 106 ---~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH~~--- 177 (332)
T PF07745_consen 106 ---KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLHLA--- 177 (332)
T ss_dssp ---HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEEES---
T ss_pred ---HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEC---
Confidence 122222222222211 24678899999998543 1234567777888888888875543 45432211
Q ss_pred cccCCCCCcccccchhhhhhHHHHHHHhhcC---CCcccccCCccccccCCCCccCccccccCCCCCCceecCCCccccc
Q 010394 167 ILDPFPPSQAFFNQSLSSVMLPLLQFLSKTG---APLMMNLYPYYVFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYT 243 (511)
Q Consensus 167 l~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~---sp~~vNiyPyf~~~~~~~~i~ldyAlF~~~~~~~~~~d~~~~~~Y~ 243 (511)
+ |-.. ..++-..+-|...+ |.++++.||||... +
T Consensus 178 --~--~~~~--------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-------l------------------------ 214 (332)
T PF07745_consen 178 --N--GGDN--------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-------L------------------------ 214 (332)
T ss_dssp -----TTSH--------HHHHHHHHHHHHTTGG-SEEEEEE-STTST--------H------------------------
T ss_pred --C--CCch--------HHHHHHHHHHHhcCCCcceEEEecCCCCcch-------H------------------------
Confidence 0 1011 12233334444433 68899999998630 0
Q ss_pred hHHHHHHHHHHHHHHhhCCCCceEEEeeeccCCCCC-----CCC---------CCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 010394 244 NVLDAMIDAAYFSMKNLNITDVMVLVTESGWPSKGD-----SKE---------PYATIDNADTYNSNLIKHILDRSGTPF 309 (511)
Q Consensus 244 Nlfda~vDav~~am~k~g~~~~~VvVsETGWPS~G~-----~~~---------~~as~~NA~~y~~~li~~~~~~~GTP~ 309 (511)
+.+...++.+. ++. +|+|+|.|||||..-+ .+. -.+|++.|+.|.+++++.+.+..+
T Consensus 215 ~~l~~~l~~l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~--- 285 (332)
T PF07745_consen 215 EDLKNNLNDLA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN--- 285 (332)
T ss_dssp HHHHHHHHHHH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHHHHHHH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc---
Confidence 11223333322 333 5899999999999721 111 125899999999999999875211
Q ss_pred CCCCceeEEEEE-eccCC-----CCCCCcCCCceeeeecCCCce
Q 010394 310 HPEVTSNVYIYE-LFNED-----LRSPPISEANWGLFHANTTPV 347 (511)
Q Consensus 310 rpg~~~~~yiF~-lFDE~-----~K~g~~~E~~wGLf~~d~tpk 347 (511)
+..+-+|+-| ..-.. |..|...|.. +||+.+|++-
T Consensus 286 --~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l 326 (332)
T PF07745_consen 286 --GGGLGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNAL 326 (332)
T ss_dssp --TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-
T ss_pred --CCeEEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCc
Confidence 1234455544 11111 1223233444 7888877654
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=1.5e-05 Score=80.69 Aligned_cols=251 Identities=18% Similarity=0.262 Sum_probs=131.3
Q ss_pred HHHHHHHHHhCCCCeEEE--e----cCC--------h------HHHHHHHhCCCEEEEecCCchhhhhcCchHHHHHHH-
Q 010394 45 PTDLVSFLQVQKITHIRL--Y----DAD--------P------DLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWI- 103 (511)
Q Consensus 45 ~~~vv~llk~~~i~~VRl--Y----d~d--------~------~vL~A~a~tgikV~vGV~n~~l~~la~~~~~A~~Wv- 103 (511)
.++..+.||.+|++.||| | |.| . ++-+.+++.|+||++..--.|.=+--.-+..-.+|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 466789999999986655 4 333 1 333556678999999874322100000001112342
Q ss_pred ------hhhccccC---------CCceEEEEEeccccccC-----CCC-ChhhHHHHHHHHHHHHHhCCCCCeeEEeccc
Q 010394 104 ------GKNVIAYY---------PETLITAIAVGDEVLTT-----VPS-SAPILLPAIESLYSALVAANLHTQIKISTPH 162 (511)
Q Consensus 104 ------~~~V~~y~---------p~~~I~~I~VGNEvl~~-----~~~-~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~ 162 (511)
++.|-.|- -+..+..|-||||.-.. +.. ....+...++.-.+++|...- .|||---.
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p--~ikv~lHl 222 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSP--TIKVALHL 222 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCC--CceEEEEe
Confidence 22222221 13567889999998532 111 344555555555566665433 46664322
Q ss_pred cccccccCCCCCcccccchhhhhhHHHHHHHhhcC---CCcccccCCccccccCCCCccCccccccCCCCCCceecCCCc
Q 010394 163 AASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTG---APLMMNLYPYYVFMQNKGVVPLDNSLFKPLTPSKEMVDPNTL 239 (511)
Q Consensus 163 ~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~---sp~~vNiyPyf~~~~~~~~i~ldyAlF~~~~~~~~~~d~~~~ 239 (511)
.+ |-..+.|+- +.|=|.+.+ +.|.+--||||... |+ .
T Consensus 223 -----a~--g~~n~~y~~--------~fd~ltk~nvdfDVig~SyYpyWhgt-------l~------------------n 262 (403)
T COG3867 223 -----AE--GENNSLYRW--------IFDELTKRNVDFDVIGSSYYPYWHGT-------LN------------------N 262 (403)
T ss_pred -----cC--CCCCchhhH--------HHHHHHHcCCCceEEeeeccccccCc-------HH------------------H
Confidence 22 222234431 222333333 56788889998752 11 0
Q ss_pred cccchHHHHHHHHHHHHHHhhCCCCceEEEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 010394 240 LHYTNVLDAMIDAAYFSMKNLNITDVMVLVTESGW--------------PSKGDSKEPYATIDNADTYNSNLIKHILDRS 305 (511)
Q Consensus 240 ~~Y~Nlfda~vDav~~am~k~g~~~~~VvVsETGW--------------PS~G~~~~~~as~~NA~~y~~~li~~~~~~~ 305 (511)
|++ | ++.+-+ + .+|.|+|.||+. |+.+....-..+++.|++|.+++|..+....
T Consensus 263 L~~-n-l~dia~-------r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp 330 (403)
T COG3867 263 LTT-N-LNDIAS-------R---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVP 330 (403)
T ss_pred HHh-H-HHHHHH-------H---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCC
Confidence 111 2 222211 1 358999999998 5555322234678999999999999987421
Q ss_pred C-------------CCCCCCCceeE-EEEEeccCCCCCCCcCCCceeeeecCCCceEee
Q 010394 306 G-------------TPFHPEVTSNV-YIYELFNEDLRSPPISEANWGLFHANTTPVYLL 350 (511)
Q Consensus 306 G-------------TP~rpg~~~~~-yiF~lFDE~~K~g~~~E~~wGLf~~d~tpky~l 350 (511)
+ -|.++|....+ |--+.-+|+|+.|..++.. -||+-+|.|.=.|
T Consensus 331 ~~~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl 388 (403)
T COG3867 331 KSNGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSL 388 (403)
T ss_pred CCCceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcch
Confidence 1 12323322222 2222334666665444333 3666666654444
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.07 E-value=0.00028 Score=69.99 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=82.6
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecC-------------Ch-------HHHHHHHhCCCEEEEecCCc-h
Q 010394 30 FVGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDA-------------DP-------DLLKALAKTKIRVIVSVPNN-Q 88 (511)
Q Consensus 30 ~~GvnYg~~~~nlps~~~vv~llk~~~i~~VRlYd~-------------d~-------~vL~A~a~tgikV~vGV~n~-~ 88 (511)
..|+|-- ..++. ..++.++.+++.|++.|||.-. +. .+|+++++.||+|+|.+... .
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3566665 22222 7788899999999999999721 11 57899999999999988653 0
Q ss_pred ---hhhhcCchHHHHHHHhh---hccccC-CCceEEEEEeccccccCCCC------ChhhHHHHHHHHHHHHHhCCCCCe
Q 010394 89 ---LLAIGSSNTTAASWIGK---NVIAYY-PETLITAIAVGDEVLTTVPS------SAPILLPAIESLYSALVAANLHTQ 155 (511)
Q Consensus 89 ---l~~la~~~~~A~~Wv~~---~V~~y~-p~~~I~~I~VGNEvl~~~~~------~~~~Lvpam~nv~~aL~~~gl~~~ 155 (511)
-...........+|+++ .+...| ....|.++=+.||+...... ....+.+.++.+.+++|+.+-...
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 00011112223333322 233333 34568899999999875332 236788999999999999988755
Q ss_pred eEEec
Q 010394 156 IKIST 160 (511)
Q Consensus 156 IkVsT 160 (511)
|-|+.
T Consensus 168 i~~~~ 172 (281)
T PF00150_consen 168 IIVGG 172 (281)
T ss_dssp EEEEE
T ss_pred eecCC
Confidence 54443
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.77 E-value=0.0059 Score=68.68 Aligned_cols=240 Identities=11% Similarity=0.085 Sum_probs=132.7
Q ss_pred HHHHHHhCCCCeEEEe--cCChHHHHHHHhCCCEEEEecCCchh---------------hhhc---C---chHHHHHHHh
Q 010394 48 LVSFLQVQKITHIRLY--DADPDLLKALAKTKIRVIVSVPNNQL---------------LAIG---S---SNTTAASWIG 104 (511)
Q Consensus 48 vv~llk~~~i~~VRlY--d~d~~vL~A~a~tgikV~vGV~n~~l---------------~~la---~---~~~~A~~Wv~ 104 (511)
.++++|+.|++.||+- -.++..+.++-..||-|+.=++.... .... . ..+...+-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 3677899999999994 33678999999999999865532100 0000 0 0112233355
Q ss_pred hhccccCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhh
Q 010394 105 KNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSS 184 (511)
Q Consensus 105 ~~V~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~ 184 (511)
+.|.++.....|..-.+|||.-.. .......++.+.+.+++..-++ +|+.+..+. . +|.. .
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR--~vt~~~~~~---~--~~~~--------~ 458 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTR--PVTCVNVMF---A--TPDT--------D 458 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCC--ceEEEeccc---C--Cccc--------c
Confidence 667666555578899999996432 1233345566666666665444 344432110 0 1100 0
Q ss_pred hhHHHHHHHhhcCCCcccccCCccccccCCCCccCccccccCCCCCCceecCCCccccchHHHHHHHHHHHHHHhhCCCC
Q 010394 185 VMLPLLQFLSKTGAPLMMNLYPYYVFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITD 264 (511)
Q Consensus 185 ~~~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~i~ldyAlF~~~~~~~~~~d~~~~~~Y~Nlfda~vDav~~am~k~g~~~ 264 (511)
.+.+++|+ +..|.|+= |..+.... ......++..++.. .+. + +
T Consensus 459 ~~~~~~Dv-------~~~N~Y~~--wy~~~~~~----------------------~~~~~~~~~~~~~~----~~~-~-~ 501 (604)
T PRK10150 459 TVSDLVDV-------LCLNRYYG--WYVDSGDL----------------------ETAEKVLEKELLAW----QEK-L-H 501 (604)
T ss_pred cccCcccE-------EEEcccce--ecCCCCCH----------------------HHHHHHHHHHHHHH----HHh-c-C
Confidence 11233444 45787642 21111000 00111222223221 111 2 7
Q ss_pred ceEEEeeeccCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEeccCCCCCCC--cCCCceee
Q 010394 265 VMVLVTESGWPSKGDSK---EPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNEDLRSPP--ISEANWGL 339 (511)
Q Consensus 265 ~~VvVsETGWPS~G~~~---~~~as~~NA~~y~~~li~~~~~~~GTP~rpg~~~~~yiF~lFDE~~K~g~--~~E~~wGL 339 (511)
+|++++|.|+.+.-+.. ...-+.+.+..|.+...+.+.+ +|. -+-.||..+||-....|. ....+.||
T Consensus 502 kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl 574 (604)
T PRK10150 502 KPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKKGI 574 (604)
T ss_pred CCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCccee
Confidence 99999999976632110 1224678888888877766543 233 344899999996554332 12357899
Q ss_pred eecCCCceEee
Q 010394 340 FHANTTPVYLL 350 (511)
Q Consensus 340 f~~d~tpky~l 350 (511)
++.||+||-..
T Consensus 575 ~~~dr~~k~~~ 585 (604)
T PRK10150 575 FTRDRQPKSAA 585 (604)
T ss_pred EcCCCCChHHH
Confidence 99999998655
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.29 E-value=0.03 Score=56.19 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=51.4
Q ss_pred HHHHHHhhCCCCceEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEeccC-CCCCCC
Q 010394 253 AYFSMKNLNITDVMVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNE-DLRSPP 331 (511)
Q Consensus 253 v~~am~k~g~~~~~VvVsETGWPS~G~~~~~~as~~NA~~y~~~li~~~~~~~GTP~rpg~~~~~yiF~lFDE-~~K~g~ 331 (511)
+...|++++-.+++|.|||.+-|..+ +.+.++.+.+++++.+.+. |+ ..-+++..+.|. .|.++
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~------p~-v~gi~~Wg~~d~~~W~~~- 235 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH------PA-VTGVTVWGVTDKYSWLDG- 235 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC------CC-eeEEEEeCCccCCcccCC-
Confidence 33344444445799999999988743 3378888999999988763 22 123555555553 45442
Q ss_pred cCCCceeeeecCCCce
Q 010394 332 ISEANWGLFHANTTPV 347 (511)
Q Consensus 332 ~~E~~wGLf~~d~tpk 347 (511)
.+-|||+.|++||
T Consensus 236 ---~~~~L~d~~~~~k 248 (254)
T smart00633 236 ---GAPLLFDANYQPK 248 (254)
T ss_pred ---CCceeECCCCCCC
Confidence 4679999999876
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=95.98 E-value=0.34 Score=48.34 Aligned_cols=167 Identities=13% Similarity=0.039 Sum_probs=90.7
Q ss_pred ceEEEEEeccccccCC--CCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHH
Q 010394 114 TLITAIAVGDEVLTTV--PSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQ 191 (511)
Q Consensus 114 ~~I~~I~VGNEvl~~~--~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ld 191 (511)
..++.|..=||+=... ..++++.+...+++.+.|+. ..||+..|.....-. . +|+. ..-|.+.++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~~~-~-~~~g-------~~Wl~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PGVKLGSPAVAFTNG-G-TPGG-------LDWLSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CCcEEECCeecccCC-C-CCCc-------cHHHHHHHH
Confidence 4688999999986543 34567777777777777763 247888775311100 0 1111 122333333
Q ss_pred HHhhcCCCcccccCCccccccCCCCccCccccccCCCCCCceecCCCccccchHHHHHHHHHHHHHHhhCCCCceEEEee
Q 010394 192 FLSKTGAPLMMNLYPYYVFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVMVLVTE 271 (511)
Q Consensus 192 fL~~t~sp~~vNiyPyf~~~~~~~~i~ldyAlF~~~~~~~~~~d~~~~~~Y~Nlfda~vDav~~am~k~g~~~~~VvVsE 271 (511)
-+.....+=.|++|.| ..+ ++...+.+....++.| +||+|||
T Consensus 131 ~~~~~~~~D~iavH~Y---~~~--------------------------------~~~~~~~i~~~~~~~~---kPIWITE 172 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY---GGD--------------------------------ADDFKDYIDDLHNRYG---KPIWITE 172 (239)
T ss_pred hcccCCCccEEEEecC---CcC--------------------------------HHHHHHHHHHHHHHhC---CCEEEEe
Confidence 2221112223444544 000 1222222333334433 9999999
Q ss_pred eccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEeccCCCCCCCcCCCceeeeecCCCc
Q 010394 272 SGWPSKGDSKEPYATIDNADTYNSNLIKHILDRSGTPFHPEVTSNVYIYELFNEDLRSPPISEANWGLFHANTTP 346 (511)
Q Consensus 272 TGWPS~G~~~~~~as~~NA~~y~~~li~~~~~~~GTP~rpg~~~~~yiF~lFDE~~K~g~~~E~~wGLf~~d~tp 346 (511)
.|+...+ ...+.+.++.|.+..+..+.+. +. --.+++|. |..+.. ....+-.|++.+|++
T Consensus 173 f~~~~~~----~~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~-~~~~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 173 FGCWNGG----SQGSDEQQASFLRQALPWLDSQ------PY-VERYAWFG-FMNDGS---GVNPNSALLDADGSL 232 (239)
T ss_pred ecccCCC----CCCCHHHHHHHHHHHHHHHhcC------CC-eeEEEecc-cccccC---CCccccccccCCCCc
Confidence 9987622 3478889999999999888642 22 22366787 322222 245566677777643
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=94.81 E-value=2.3 Score=46.14 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCeEEEe--------c----CCh-------HHHHHHHhCCCEEEEecCCchh
Q 010394 45 PTDLVSFLQVQKITHIRLY--------D----ADP-------DLLKALAKTKIRVIVSVPNNQL 89 (511)
Q Consensus 45 ~~~vv~llk~~~i~~VRlY--------d----~d~-------~vL~A~a~tgikV~vGV~n~~l 89 (511)
-++.+++|++.|++++|+= + .|. ++|.++.+.||+++|.+.--++
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~ 119 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDL 119 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCc
Confidence 3567889999999999863 1 122 6889999999999999954333
No 13
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=94.58 E-value=0.44 Score=48.65 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=67.2
Q ss_pred ceeEEecCCCCC---CCCHHHH---HHHHHhCCCCeEEEec--CChHHHHHHHhCCCEEEEecCCch---hhh------h
Q 010394 30 FVGVNIGTDVSN---LLSPTDL---VSFLQVQKITHIRLYD--ADPDLLKALAKTKIRVIVSVPNNQ---LLA------I 92 (511)
Q Consensus 30 ~~GvnYg~~~~n---lps~~~v---v~llk~~~i~~VRlYd--~d~~vL~A~a~tgikV~vGV~n~~---l~~------l 92 (511)
..|||+...... .++.+++ ++++|+.|++.||+.. .++..+.++-..||-|+..++... ... .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 359998874332 2455544 5678999999999963 457999999999999998876511 000 0
Q ss_pred cCch---HHHHHHHhhhccccCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCC
Q 010394 93 GSSN---TTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHT 154 (511)
Q Consensus 93 a~~~---~~A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl~~ 154 (511)
..++ +.+.+-+++.|.++.-...|..=.+|||. .....++++.+.+++..-++
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptR 152 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTR 152 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCC
Confidence 1122 23344566667766544568888999999 23344555555555555444
No 14
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=89.38 E-value=18 Score=43.81 Aligned_cols=96 Identities=10% Similarity=0.142 Sum_probs=60.3
Q ss_pred eeEEecCCCCC---CCCHHHH---HHHHHhCCCCeEEEec--CChHHHHHHHhCCCEEEEecCCch-----hhhhcCch-
Q 010394 31 VGVNIGTDVSN---LLSPTDL---VSFLQVQKITHIRLYD--ADPDLLKALAKTKIRVIVSVPNNQ-----LLAIGSSN- 96 (511)
Q Consensus 31 ~GvnYg~~~~n---lps~~~v---v~llk~~~i~~VRlYd--~d~~vL~A~a~tgikV~vGV~n~~-----l~~la~~~- 96 (511)
.|||+-..... -.+++++ ++++|+.|++.||+-. .++..++.+-..||-|+--++.+. ...+..++
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 48887543221 2455554 5678999999999953 357899999999999987654210 01122222
Q ss_pred --HHHHHHHhhhccccCCCceEEEEEeccccc
Q 010394 97 --TTAASWIGKNVIAYYPETLITAIAVGDEVL 126 (511)
Q Consensus 97 --~~A~~Wv~~~V~~y~p~~~I~~I~VGNEvl 126 (511)
++..+-+++.|.+......|..=++|||.-
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 122333455566654445789999999963
No 15
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=88.35 E-value=20 Score=43.35 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=59.5
Q ss_pred eeEEecCCCCC---CCCHHHH---HHHHHhCCCCeEEEec--CChHHHHHHHhCCCEEEEecCCc--h------hhhhcC
Q 010394 31 VGVNIGTDVSN---LLSPTDL---VSFLQVQKITHIRLYD--ADPDLLKALAKTKIRVIVSVPNN--Q------LLAIGS 94 (511)
Q Consensus 31 ~GvnYg~~~~n---lps~~~v---v~llk~~~i~~VRlYd--~d~~vL~A~a~tgikV~vGV~n~--~------l~~la~ 94 (511)
.|||+-..... ..+++++ ++++|+.|++.||+-. .++..+.++-..||-|+--++.+ . ...+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 48886433211 1344443 6678999999999863 34688999999999998754211 0 011122
Q ss_pred ch---HHHHHHHhhhccccCCCceEEEEEecccccc
Q 010394 95 SN---TTAASWIGKNVIAYYPETLITAIAVGDEVLT 127 (511)
Q Consensus 95 ~~---~~A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~ 127 (511)
++ ++..+-+++.|.++.....|..-++|||.-.
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 22 1222335566666644457888899999743
No 16
>PRK09936 hypothetical protein; Provisional
Probab=83.15 E-value=24 Score=36.63 Aligned_cols=135 Identities=14% Similarity=0.146 Sum_probs=72.7
Q ss_pred HHHHHHHhhccccCCCCCCCceeEEecCCCCCC-CCHHHH---HHHHHhCCCCeEEEe-----cCC--------hHHHHH
Q 010394 10 IIFYFTVLNTAKAADPDKEPFVGVNIGTDVSNL-LSPTDL---VSFLQVQKITHIRLY-----DAD--------PDLLKA 72 (511)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~GvnYg~~~~nl-ps~~~v---v~llk~~~i~~VRlY-----d~d--------~~vL~A 72 (511)
|++++..|.++++..+. .|+=|-|...|. -++++- .+.++..|++.+=+= +.| .+.|++
T Consensus 5 ~~~~l~~l~~~~~~~a~----~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~ 80 (296)
T PRK09936 5 IFVLLTLLLVSPFSQAM----KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAA 80 (296)
T ss_pred HHHHHHHHHcCchhhcc----ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHH
Confidence 33444566666543332 355699998883 466655 455677898776542 222 278899
Q ss_pred HHhCCCEEEEecCCch--hhhhcCchHHHHHHHhhhccccC---------CCceEE--EEEeccccc-cCCCCChhhHHH
Q 010394 73 LAKTKIRVIVSVPNNQ--LLAIGSSNTTAASWIGKNVIAYY---------PETLIT--AIAVGDEVL-TTVPSSAPILLP 138 (511)
Q Consensus 73 ~a~tgikV~vGV~n~~--l~~la~~~~~A~~Wv~~~V~~y~---------p~~~I~--~I~VGNEvl-~~~~~~~~~Lvp 138 (511)
+...||+|.||++-|. -..+..+.+.-+.|++......+ ++..++ ||-+-=|.. .++..--..|+.
T Consensus 81 A~~~Gl~v~vGL~~Dp~y~q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~ 160 (296)
T PRK09936 81 AQQAGLKLVVGLYADPEFFMHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLT 160 (296)
T ss_pred HHHcCCEEEEcccCChHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHH
Confidence 9999999999998652 12222233333444443222110 223333 344333322 222222346667
Q ss_pred HHHHHHHHHH
Q 010394 139 AIESLYSALV 148 (511)
Q Consensus 139 am~nv~~aL~ 148 (511)
.++++.+.|.
T Consensus 161 ~L~~~~~~l~ 170 (296)
T PRK09936 161 WLNAAQRLID 170 (296)
T ss_pred HHHHHHHhCC
Confidence 7777766654
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=75.98 E-value=7.3 Score=41.20 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCCCeEEEecC-------C---------hHHHHHHHhCCCEEEEecCCchh--------hhh--------
Q 010394 45 PTDLVSFLQVQKITHIRLYDA-------D---------PDLLKALAKTKIRVIVSVPNNQL--------LAI-------- 92 (511)
Q Consensus 45 ~~~vv~llk~~~i~~VRlYd~-------d---------~~vL~A~a~tgikV~vGV~n~~l--------~~l-------- 92 (511)
.++.++++|+.|++.|||-.. . -.+|..+++.||+|+|+++.... +.+
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 456788889999999998432 1 16788899999999999963210 000
Q ss_pred ----c-------Cc---hHHHHHHHhhhccccCCCceEEEEEecccccc
Q 010394 93 ----G-------SS---NTTAASWIGKNVIAYYPETLITAIAVGDEVLT 127 (511)
Q Consensus 93 ----a-------~~---~~~A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~ 127 (511)
. .+ .+.+.+.++..+..|-....|.++-|.||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0 01 13445556555566644567999999999865
No 18
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=74.10 E-value=2.4 Score=46.35 Aligned_cols=116 Identities=17% Similarity=0.089 Sum_probs=63.6
Q ss_pred HHHHHHHHHhCCCCeEEEe--------c-----CCh-------HHHHHHHhCCCEEEEecCCchhhhhc------CchHH
Q 010394 45 PTDLVSFLQVQKITHIRLY--------D-----ADP-------DLLKALAKTKIRVIVSVPNNQLLAIG------SSNTT 98 (511)
Q Consensus 45 ~~~vv~llk~~~i~~VRlY--------d-----~d~-------~vL~A~a~tgikV~vGV~n~~l~~la------~~~~~ 98 (511)
.++.+++||+.|++..|+= + .|+ +++..|...||+.+|.+.--+++.-- .+.+.
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 4677899999999999975 1 122 68899999999999999644443211 11122
Q ss_pred HHHH---HhhhccccCCCceEEEEEeccccccC-------C---C--CC-------hhhHHHHHHHHHHHHHhCCCCCee
Q 010394 99 AASW---IGKNVIAYYPETLITAIAVGDEVLTT-------V---P--SS-------APILLPAIESLYSALVAANLHTQI 156 (511)
Q Consensus 99 A~~W---v~~~V~~y~p~~~I~~I~VGNEvl~~-------~---~--~~-------~~~Lvpam~nv~~aL~~~gl~~~I 156 (511)
++.. .+.-+..| ++.|+.-+.=||...- + + .. ...++-|-..+.+++++....+
T Consensus 140 ~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~-- 215 (455)
T PF00232_consen 140 VDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDG-- 215 (455)
T ss_dssp HHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTS--
T ss_pred HHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccce--
Confidence 2111 11111122 3568888888997531 1 1 11 1134555555666667666444
Q ss_pred EEeccccc
Q 010394 157 KISTPHAA 164 (511)
Q Consensus 157 kVsT~~~~ 164 (511)
+|+..++.
T Consensus 216 ~IGi~~~~ 223 (455)
T PF00232_consen 216 KIGIALNF 223 (455)
T ss_dssp EEEEEEEE
T ss_pred EEeccccc
Confidence 55555543
No 19
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=73.81 E-value=17 Score=38.42 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=60.0
Q ss_pred CCCeEEEec-CChHHHHHHHhCCCEEEEecCCchhhhhcCchHHHHHHHhhhccccCCCceEEEEEeccccccC-CCCCh
Q 010394 56 KITHIRLYD-ADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTT-VPSSA 133 (511)
Q Consensus 56 ~i~~VRlYd-~d~~vL~A~a~tgikV~vGV~n~~l~~la~~~~~A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~~-~~~~~ 133 (511)
.+++|-+|+ .|++++..+...|+||++..-.. ...+ .+++.-+++++.-| .++..-...+|-+==|-... +....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 478899885 47899999999999999865322 2223 34444444544332 23222234455443343221 22334
Q ss_pred hhHHHHHHHHHHHHHhCCCCCeeEE
Q 010394 134 PILLPAIESLYSALVAANLHTQIKI 158 (511)
Q Consensus 134 ~~Lvpam~nv~~aL~~~gl~~~IkV 158 (511)
..++.-|+++|++|++.+..-.+.|
T Consensus 132 ~~~t~llkelr~~l~~~~~~~~Lsv 156 (358)
T cd02875 132 YALTELVKETTKAFKKENPGYQISF 156 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 6789999999999998764433433
No 20
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=69.72 E-value=16 Score=28.60 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC-----hHHHHHHHhCCCEEEEecC
Q 010394 43 LSPTDLVSFLQVQKITHIRLYDAD-----PDLLKALAKTKIRVIVSVP 85 (511)
Q Consensus 43 ps~~~vv~llk~~~i~~VRlYd~d-----~~vL~A~a~tgikV~vGV~ 85 (511)
-+++++++.++++|++.|=+=|-+ +...+.++..||+|+.|+.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 368899999999999999888877 4566777789999999985
No 21
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=65.76 E-value=1.5e+02 Score=32.65 Aligned_cols=248 Identities=12% Similarity=0.122 Sum_probs=110.6
Q ss_pred HHHHHhCCCCeEEEecCC-----------------------hHHHHHHHhCCCEEEEecCCchhhhhc------------
Q 010394 49 VSFLQVQKITHIRLYDAD-----------------------PDLLKALAKTKIRVIVSVPNNQLLAIG------------ 93 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d-----------------------~~vL~A~a~tgikV~vGV~n~~l~~la------------ 93 (511)
..+.+..||+.||+...= -.++..+...||+-+|-+.-. ...++
T Consensus 46 ~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~-p~~~~~~~~~~~~~~~~ 124 (486)
T PF01229_consen 46 RELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFM-PMALASGYQTVFWYKGN 124 (486)
T ss_dssp HHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB--GGGBSS--EETTTTEE
T ss_pred HHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEec-hhhhcCCCCccccccCC
Confidence 333445799999998321 157889999999987665310 11111
Q ss_pred ----CchHH----HHHHHhhhccccCCCceEE--EEEeccccccCC---CCChhhHHHHHHHHHHHHHhCCCCCeeEEec
Q 010394 94 ----SSNTT----AASWIGKNVIAYYPETLIT--AIAVGDEVLTTV---PSSAPILLPAIESLYSALVAANLHTQIKIST 160 (511)
Q Consensus 94 ----~~~~~----A~~Wv~~~V~~y~p~~~I~--~I~VGNEvl~~~---~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT 160 (511)
.+.+. ..++++.-+.+| +...|. +.=|=||+=... .....+-....+...++|++..- .+||+-
T Consensus 125 ~~pp~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p--~~~vGG 201 (486)
T PF01229_consen 125 ISPPKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDP--ELKVGG 201 (486)
T ss_dssp -S-BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-T--TSEEEE
T ss_pred cCCcccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCC--CCcccC
Confidence 11111 222333333333 111121 455788864321 12344566777778888888753 478887
Q ss_pred cccccccccCCCCCcccccchhhhhhHHHHHHHhhcCC---CcccccCCccccccCCCCccCccccccCCCCCCceecCC
Q 010394 161 PHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGA---PLMMNLYPYYVFMQNKGVVPLDNSLFKPLTPSKEMVDPN 237 (511)
Q Consensus 161 ~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~s---p~~vNiyPyf~~~~~~~~i~ldyAlF~~~~~~~~~~d~~ 237 (511)
|-.. + .. ...+...++|+.+.+. ++..+.||+=..... .......-
T Consensus 202 p~~~--~---------~~----~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~----------------~~~~~~~~ 250 (486)
T PF01229_consen 202 PAFA--W---------AY----DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDI----------------NENMYERI 250 (486)
T ss_dssp EEEE--T---------T-----THHHHHHHHHHHHCT---SEEEEEEE-BESESE-----------------SS-EEEEB
T ss_pred cccc--c---------cH----HHHHHHHHHHHhcCCCCCCEEEEEeccccccccc----------------chhHHhhh
Confidence 7110 0 00 1345677788876553 334555554111000 00010000
Q ss_pred CccccchHHHHHHHHHHHHHHhhCCCCceEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcee
Q 010394 238 TLLHYTNVLDAMIDAAYFSMKNLNITDVMVLVTESGWPSKGDSKE-PYATIDNADTYNSNLIKHILDRSGTPFHPEVTSN 316 (511)
Q Consensus 238 ~~~~Y~Nlfda~vDav~~am~k~g~~~~~VvVsETGWPS~G~~~~-~~as~~NA~~y~~~li~~~~~~~GTP~rpg~~~~ 316 (511)
.....+++. +--+...+...+++++++.++| |.+.-.... ..-|.-+|+-..+++++.... .++
T Consensus 251 --~~~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~ 315 (486)
T PF01229_consen 251 --EDSRRLFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLD 315 (486)
T ss_dssp ----HHHHHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-S
T ss_pred --hhHHHHHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhh
Confidence 001112222 2222334555678999999999 776544321 123556666555556655421 123
Q ss_pred E--EE-E-EeccCCCCCCCcCCCceeeeecCCCc
Q 010394 317 V--YI-Y-ELFNEDLRSPPISEANWGLFHANTTP 346 (511)
Q Consensus 317 ~--yi-F-~lFDE~~K~g~~~E~~wGLf~~d~tp 346 (511)
. || | ..|.|+-.+....-.-|||+.-+|-+
T Consensus 316 ~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~ 349 (486)
T PF01229_consen 316 SFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIP 349 (486)
T ss_dssp EEEES-SBS---TTSS-SSSSSS-S-SEECCCEE
T ss_pred hhhccchhhhhhccCCCCCceecchhhhhccCCC
Confidence 2 21 2 24444443333456779999998733
No 22
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=61.94 E-value=11 Score=35.60 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=27.5
Q ss_pred HHHHHHhCCCCeEEEecCChHHHHHHHhCCCEEEEec
Q 010394 48 LVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSV 84 (511)
Q Consensus 48 vv~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~vGV 84 (511)
-+|.|+..|+++||+...+|.-+.++.+.||+|.=-|
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 3689999999999999999999999999999997544
No 23
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=56.72 E-value=1.1e+02 Score=29.04 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCCeEEE----------ecCC--------------hHHHHHHHhCCCEEEEecCCc-hhhhhcCchHHH-
Q 010394 46 TDLVSFLQVQKITHIRL----------YDAD--------------PDLLKALAKTKIRVIVSVPNN-QLLAIGSSNTTA- 99 (511)
Q Consensus 46 ~~vv~llk~~~i~~VRl----------Yd~d--------------~~vL~A~a~tgikV~vGV~n~-~l~~la~~~~~A- 99 (511)
++.++.+|+.||+.|=+ |.++ ..+|+++...||||++|++-+ .--. ..+.+..
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~~ 101 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD-QGDLDWEA 101 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHHH
Confidence 44567788889987722 1111 267899999999999999843 1111 1121111
Q ss_pred --HHHHhhhccc-cCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCeeEE
Q 010394 100 --ASWIGKNVIA-YYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKI 158 (511)
Q Consensus 100 --~~Wv~~~V~~-y~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkV 158 (511)
.+-+...+.. |-....+.+--+-.|+=... ...+++.+.+.+.|++..-+.+|-|
T Consensus 102 ~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l~~~lk~~s~~~Pv~I 159 (166)
T PF14488_consen 102 ERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFALLGKYLKQISPGKPVMI 159 (166)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHHHHHHHHHhCCCCCeEE
Confidence 0112222222 21123566666777764332 2346666667777766533333433
No 24
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=55.30 E-value=1.4e+02 Score=32.03 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=35.3
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCcccc
Q 010394 131 SSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYYVF 210 (511)
Q Consensus 131 ~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~ 210 (511)
.+..+...+++.+|+.. .| |.+++.. +. +|| .+-.+.+...++|+.+.+ +-.+++|||--+
T Consensus 270 ~~~~~~~~~v~~l~~~~--~g----i~i~~~~----Iv-G~P-------gET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 270 YTRDDFLKLVNKLRSVR--PD----YAFGTDI----IV-GFP-------GESEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred CCHHHHHHHHHHHHHhC--CC----CeeeeeE----EE-ECC-------CCCHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 35567778888777642 22 4444432 21 243 122345778889998765 446788877443
No 25
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=54.36 E-value=20 Score=34.72 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=30.8
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHHHhCCCEEE
Q 010394 49 VSFLQVQKITHIRLYDADPDLLKALAKTKIRVI 81 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~ 81 (511)
+|.|+..|+++||+...++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998888889999999997
No 26
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=54.23 E-value=20 Score=34.94 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=30.9
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHHHhCCCEEE
Q 010394 49 VSFLQVQKITHIRLYDADPDLLKALAKTKIRVI 81 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~ 81 (511)
+|.|+..|+++||+...++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998888889999999997
No 27
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.65 E-value=51 Score=35.32 Aligned_cols=60 Identities=13% Similarity=0.252 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHHHHHHhhCCCCceEEEeeeccCCCCCCCCC---CCCHHHHHHHHHHHHHHHHhc
Q 010394 242 YTNVLDAMIDAAYFSMKNLNITDVMVLVTESGWPSKGDSKEP---YATIDNADTYNSNLIKHILDR 304 (511)
Q Consensus 242 Y~Nlfda~vDav~~am~k~g~~~~~VvVsETGWPS~G~~~~~---~as~~NA~~y~~~li~~~~~~ 304 (511)
|.|-|++-+--......-.|+..++|+.+ |||.|.-.+- -.|..-++.-+.++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 55556654443334445567788999988 9999974321 245555666677778777653
No 28
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=49.99 E-value=62 Score=34.03 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=35.7
Q ss_pred HHHHH-HHhCCCEEEEecCCc-hhhhhcCchHHHHHHHhhhccccCC-----CceEEEEEeccccccCC---CCChhhHH
Q 010394 68 DLLKA-LAKTKIRVIVSVPNN-QLLAIGSSNTTAASWIGKNVIAYYP-----ETLITAIAVGDEVLTTV---PSSAPILL 137 (511)
Q Consensus 68 ~vL~A-~a~tgikV~vGV~n~-~l~~la~~~~~A~~Wv~~~V~~y~p-----~~~I~~I~VGNEvl~~~---~~~~~~Lv 137 (511)
+.|.. +..+|.+|+.|+.-- ....+. .....-.|--+|...++. +=+|.+-=.|||.-..+ ...+.++.
T Consensus 112 d~l~~F~~~tG~~liFgLNAL~g~~~~~-~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qya 190 (319)
T PF03662_consen 112 DELNNFAQKTGLKLIFGLNALLGRRQLA-DRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYA 190 (319)
T ss_dssp HHHHHHHHHHT-EEEEEE-TTTS-HHHH-HHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHH
T ss_pred HHHHHHHHHhCCEEEEEecccCCCCCCC-CCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHH
Confidence 34444 457999999999421 000010 113345777666554432 22577888999975432 23467888
Q ss_pred HHHHHHHHHHHh
Q 010394 138 PAIESLYSALVA 149 (511)
Q Consensus 138 pam~nv~~aL~~ 149 (511)
.-...+|+.|++
T Consensus 191 kD~~~Lr~il~~ 202 (319)
T PF03662_consen 191 KDFIQLRKILNE 202 (319)
T ss_dssp HHH---HHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887765
No 29
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=48.19 E-value=3.5e+02 Score=28.42 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=76.7
Q ss_pred CCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCccccccCCCCccCccccccCCCCCCc-------eecCCCcccc
Q 010394 170 PFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYYVFMQNKGVVPLDNSLFKPLTPSKE-------MVDPNTLLHY 242 (511)
Q Consensus 170 s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~i~ldyAlF~~~~~~~~-------~~d~~~~~~Y 242 (511)
.+|...+.++++..+.++++++.+.+.++.+.+-+.--=... .. ..+-.-.. . |... .....|...-
T Consensus 63 ~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~-~~-~~~~~~~~-~---ps~~~~~~~~~~~~~mt~~eI 136 (343)
T cd04734 63 PAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRG-DG-DGSWLPPL-A---PSAVPEPRHRAVPKAMEEEDI 136 (343)
T ss_pred CCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCc-Cc-ccCCCccc-C---CCCCCCCCCCCCCCcCCHHHH
Confidence 455566777877778899999999999999888875321110 00 00000000 0 0100 0011111112
Q ss_pred chHHHHHHHHHHHHHHhhCCCCceEEEeeecc-------CCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 010394 243 TNVLDAMIDAAYFSMKNLNITDVMVLVTESGW-------PSKG-DSKEPYATIDNADTYNSNLIKHILDRSGT 307 (511)
Q Consensus 243 ~Nlfda~vDav~~am~k~g~~~~~VvVsETGW-------PS~G-~~~~~~as~~NA~~y~~~li~~~~~~~GT 307 (511)
..+.+...+|...|. ++||.+++|-..- |+ |..- ..++.+.+++|-.+|...+++.+++..|.
T Consensus 137 ~~ii~~f~~AA~ra~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 137 EEIIAAFADAARRCQ-AGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 345555566666554 5799999998654 54 4322 22355789999999999999999876664
No 30
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=48.14 E-value=1.2e+02 Score=32.05 Aligned_cols=95 Identities=20% Similarity=0.160 Sum_probs=58.8
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecCChHHHHHHHhCCCEEEEecCCchhhhhcCchHHHHHHHhhhcc
Q 010394 29 PFVGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVI 108 (511)
Q Consensus 29 ~~~GvnYg~~~~nlps~~~vv~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~vGV~n~~l~~la~~~~~A~~Wv~~~V~ 108 (511)
..+|||.-...++ +..++.++.+.+.+...|=+..-+|..++.++..||+|+.-|++ +..|..+.+..+
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~Ga- 124 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENGA- 124 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcCC-
Confidence 3589998544333 33456677777777877766655676689999999999988864 344555554433
Q ss_pred ccCCCceEEEEEeccccc-cCCCCChhhHHHHHH
Q 010394 109 AYYPETLITAIAVGDEVL-TTVPSSAPILLPAIE 141 (511)
Q Consensus 109 ~y~p~~~I~~I~VGNEvl-~~~~~~~~~Lvpam~ 141 (511)
+ .-|+-|.|.= -.++.+...|+|.+.
T Consensus 125 -----D--~vVaqG~EAGGH~G~~~t~~L~~~v~ 151 (320)
T cd04743 125 -----R--KFIFEGRECGGHVGPRSSFVLWESAI 151 (320)
T ss_pred -----C--EEEEecCcCcCCCCCCCchhhHHHHH
Confidence 2 2467788872 112223334666543
No 31
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=47.83 E-value=12 Score=28.21 Aligned_cols=18 Identities=17% Similarity=0.539 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHhhcccc
Q 010394 5 KLTLFIIFYFTVLNTAKA 22 (511)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (511)
|-||+|+|.+|.+++|--
T Consensus 4 KKsllLlfflG~ISlSlC 21 (46)
T PF03032_consen 4 KKSLLLLFFLGTISLSLC 21 (46)
T ss_pred hHHHHHHHHHHHcccchH
Confidence 678999999999998765
No 32
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=47.38 E-value=48 Score=36.53 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCeEEEe---------c---CCh-------HHHHHHHhCCCEEEEecCCchhh
Q 010394 45 PTDLVSFLQVQKITHIRLY---------D---ADP-------DLLKALAKTKIRVIVSVPNNQLL 90 (511)
Q Consensus 45 ~~~vv~llk~~~i~~VRlY---------d---~d~-------~vL~A~a~tgikV~vGV~n~~l~ 90 (511)
-++.++++|+.|++..|+= + .|+ +++.+|.+.||+-+|.+.--+++
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 4677899999998887753 1 132 78999999999999999755554
No 33
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.19 E-value=4.1e+02 Score=29.56 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=33.0
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCc
Q 010394 131 SSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPY 207 (511)
Q Consensus 131 ~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPy 207 (511)
.+..+...+++.+|++. . .|.|++.. +. +|| .+-...+...++|+.+.+ +-.+++|+|
T Consensus 289 ~t~~~~~~~v~~lr~~~----~--~i~i~~~~----Iv-GfP-------gET~edf~~Tl~~i~~~~-~~~~~~f~~ 346 (502)
T PRK14326 289 YRSERFLGILEKVRAAM----P--DAAITTDI----IV-GFP-------GETEEDFQATLDVVREAR-FSSAFTFQY 346 (502)
T ss_pred CCHHHHHHHHHHHHHhC----C--CCeEEEEE----EE-ECC-------CCCHHHHHHHHHHHHHcC-CCEEEEEee
Confidence 45667778888777652 1 25566532 22 244 122345778899987654 223566654
No 34
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=44.88 E-value=26 Score=37.60 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHHHhCCCEEE
Q 010394 49 VSFLQVQKITHIRLYDADPDLLKALAKTKIRVI 81 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~ 81 (511)
+|+|+..|+++|||. .+|.=+.+|.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 689999999999999 78988899999999997
No 35
>PLN02814 beta-glucosidase
Probab=44.82 E-value=65 Score=35.98 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCeEEEe-------c-----CCh-------HHHHHHHhCCCEEEEecCCchhh
Q 010394 45 PTDLVSFLQVQKITHIRLY-------D-----ADP-------DLLKALAKTKIRVIVSVPNNQLL 90 (511)
Q Consensus 45 ~~~vv~llk~~~i~~VRlY-------d-----~d~-------~vL~A~a~tgikV~vGV~n~~l~ 90 (511)
-++.++++|+.|++.-|.= = .|+ +++.+|.+.||+-+|.+.--+++
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 3567899999998877753 1 232 78999999999999999754554
No 36
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.45 E-value=1.3e+02 Score=32.70 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=32.7
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCc
Q 010394 131 SSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPY 207 (511)
Q Consensus 131 ~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPy 207 (511)
.+.++++.+++.+|++. . .+.+++.. +. +|| | +-...+...++|+.+.+ +-.+++|+|
T Consensus 269 ~~~~~~~~~v~~lr~~~----~--~i~i~~d~----Iv-G~P---g----Et~ed~~~tl~~i~~l~-~~~i~~f~y 326 (440)
T PRK14334 269 YRREKYLERIAEIREAL----P--DVVLSTDI----IV-GFP---G----ETEEDFQETLSLYDEVG-YDSAYMFIY 326 (440)
T ss_pred CCHHHHHHHHHHHHHhC----C--CcEEEEeE----EE-ECC---C----CCHHHHHHHHHHHHhcC-CCEeeeeEe
Confidence 45567788888877652 2 24444432 22 233 1 11244677888887654 445677765
No 37
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=43.62 E-value=36 Score=32.93 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.6
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHHHhCCCEEE
Q 010394 49 VSFLQVQKITHIRLYDADPDLLKALAKTKIRVI 81 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~ 81 (511)
+|.|+..|+++||+....+.-+.++.+.||+|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998878889999999998
No 38
>PLN00196 alpha-amylase; Provisional
Probab=43.01 E-value=1.1e+02 Score=33.57 Aligned_cols=56 Identities=32% Similarity=0.371 Sum_probs=37.2
Q ss_pred ceeEEecCCCCCCCCHHHH---HHHHHhCCCCeE-----------------EEecCC-h---------HHHHHHHhCCCE
Q 010394 30 FVGVNIGTDVSNLLSPTDL---VSFLQVQKITHI-----------------RLYDAD-P---------DLLKALAKTKIR 79 (511)
Q Consensus 30 ~~GvnYg~~~~nlps~~~v---v~llk~~~i~~V-----------------RlYd~d-~---------~vL~A~a~tgik 79 (511)
..|++|-....+.-.-..+ +..|++.||+.| +.|+.| + ++++++.+.||+
T Consensus 28 ~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 28 FQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred EEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCE
Confidence 3599985533332233333 456788888877 456665 2 567888899999
Q ss_pred EEEecC
Q 010394 80 VIVSVP 85 (511)
Q Consensus 80 V~vGV~ 85 (511)
|++.+-
T Consensus 108 VilDvV 113 (428)
T PLN00196 108 VIADIV 113 (428)
T ss_pred EEEEEC
Confidence 999864
No 39
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=42.76 E-value=2.3e+02 Score=30.73 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=51.5
Q ss_pred HHHHHHHhCCCEEEEecCCchhh----------------hhcCc-hHHHHHHHhhhccccCC--CceEEEEEeccccccC
Q 010394 68 DLLKALAKTKIRVIVSVPNNQLL----------------AIGSS-NTTAASWIGKNVIAYYP--ETLITAIAVGDEVLTT 128 (511)
Q Consensus 68 ~vL~A~a~tgikV~vGV~n~~l~----------------~la~~-~~~A~~Wv~~~V~~y~p--~~~I~~I~VGNEvl~~ 128 (511)
..|+++++.|++.+++..|.-.- .+..+ .++=..-+.+ |..|+. +.+|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~-Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD-VVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH-HHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH-HHHHHHhcCCccceeCCcCCCCCC
Confidence 67899999999999987653110 01111 1111112222 222221 4689999999999864
Q ss_pred C----C----CChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccc
Q 010394 129 V----P----SSAPILLPAIESLYSALVAANLHTQIKISTPHAASIIL 168 (511)
Q Consensus 129 ~----~----~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~ 168 (511)
- + ...++....|+.++++|+++||..+|-+.-+..++.|-
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~ 234 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLY 234 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHh
Confidence 1 1 23568899999999999999998766555444555554
No 40
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=42.30 E-value=30 Score=37.09 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=30.6
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHHHhCCCEEEE
Q 010394 49 VSFLQVQKITHIRLYDADPDLLKALAKTKIRVIV 82 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~v 82 (511)
+|.|+..|+++|||.. +|.=+.+|.+.||+|.=
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~ 360 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTG 360 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEE
Confidence 6899999999999999 99999999999999973
No 41
>PLN02998 beta-glucosidase
Probab=41.56 E-value=53 Score=36.56 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCeEEEe-------c-----CCh-------HHHHHHHhCCCEEEEecCCchhh
Q 010394 46 TDLVSFLQVQKITHIRLY-------D-----ADP-------DLLKALAKTKIRVIVSVPNNQLL 90 (511)
Q Consensus 46 ~~vv~llk~~~i~~VRlY-------d-----~d~-------~vL~A~a~tgikV~vGV~n~~l~ 90 (511)
++.++++|+.|++.-|+= = .|+ +++.+|.+.||+-+|.+.--+++
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP 148 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLP 148 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 567899999998887753 1 232 78999999999999999754544
No 42
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=41.26 E-value=2.3e+02 Score=28.95 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHhCCCCeEEEecCC-------hHHHHH---HHhCCCEEEEecCCchh---hhhcCchHHHHHHHhhhc
Q 010394 41 NLLSPTDLVSFLQVQKITHIRLYDAD-------PDLLKA---LAKTKIRVIVSVPNNQL---LAIGSSNTTAASWIGKNV 107 (511)
Q Consensus 41 nlps~~~vv~llk~~~i~~VRlYd~d-------~~vL~A---~a~tgikV~vGV~n~~l---~~la~~~~~A~~Wv~~~V 107 (511)
+.++|.+..+.|+..|+++|-+-.+. ..+++. +...--++.+|-|.=.. ..-..+.....+-+...+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 56899999999999999999998765 134333 33344689999873110 001112222223333333
Q ss_pred cccCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhH
Q 010394 108 IAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVML 187 (511)
Q Consensus 108 ~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~ 187 (511)
..--++..+..+-=||+-. +. .+-..++..|++.++.+ +-|+|.+. +| + +.
T Consensus 136 ~~~~~~~a~vlmGHGt~h~------an---~~Y~~l~~~l~~~~~~~-v~vgtvEG-------~P--------~----~~ 186 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPHP------AN---AAYSALQAMLKKHGYPN-VFVGTVEG-------YP--------S----LE 186 (262)
T ss_dssp -TT-TTEEEEEEE---SCH------HH---HHHHHHHHHHHCCT-TT-EEEEETTS-------SS--------B----HH
T ss_pred cccCCCCEEEEEeCCCCCC------cc---HHHHHHHHHHHhCCCCe-EEEEEeCC-------CC--------C----HH
Confidence 2122345566666666532 11 23344567788877754 88999863 43 1 23
Q ss_pred HHHHHHhhcCCCcccccCCccccc
Q 010394 188 PLLQFLSKTGAPLMMNLYPYYVFM 211 (511)
Q Consensus 188 ~~ldfL~~t~sp~~vNiyPyf~~~ 211 (511)
.+++.|.+.+- =-|.+.||.--.
T Consensus 187 ~vi~~L~~~g~-k~V~L~PlMlVA 209 (262)
T PF06180_consen 187 DVIARLKKKGI-KKVHLIPLMLVA 209 (262)
T ss_dssp HHHHHHHHHT--SEEEEEEESSS-
T ss_pred HHHHHHHhcCC-CeEEEEeccccc
Confidence 44555554432 137888887543
No 43
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=40.42 E-value=96 Score=32.44 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=43.1
Q ss_pred HHHHh--CCCEEEEecC--Cc---hhhhhcCchHHHHHHHhhhccccCCCceEEEEEeccccccC---CCCChhhHHHHH
Q 010394 71 KALAK--TKIRVIVSVP--NN---QLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTT---VPSSAPILLPAI 140 (511)
Q Consensus 71 ~A~a~--tgikV~vGV~--n~---~l~~la~~~~~A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~~---~~~~~~~Lvpam 140 (511)
.+++. .++||++.|. +. ....++++++..++.++. +..++..-.+.+|-+==|-... .+.....++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34443 5899998884 21 345555655443433322 2223221234444443332211 112345789999
Q ss_pred HHHHHHHHhCC
Q 010394 141 ESLYSALVAAN 151 (511)
Q Consensus 141 ~nv~~aL~~~g 151 (511)
+.+|++|++.+
T Consensus 141 ~~lr~~l~~~~ 151 (362)
T cd02872 141 KELREAFEPEA 151 (362)
T ss_pred HHHHHHHHhhC
Confidence 99999999873
No 44
>PLN02849 beta-glucosidase
Probab=39.36 E-value=95 Score=34.65 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCCeEEEe-------c-----CCh-------HHHHHHHhCCCEEEEecCCchhh
Q 010394 46 TDLVSFLQVQKITHIRLY-------D-----ADP-------DLLKALAKTKIRVIVSVPNNQLL 90 (511)
Q Consensus 46 ~~vv~llk~~~i~~VRlY-------d-----~d~-------~vL~A~a~tgikV~vGV~n~~l~ 90 (511)
++.+++||+.|++.-|+= - .|+ +++.++.+.||+-+|.+.--+++
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 567899999998887753 1 232 78899999999999999754444
No 45
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=38.02 E-value=2.2e+02 Score=30.74 Aligned_cols=105 Identities=10% Similarity=0.106 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCCCeEEEecC----------Ch------------HHHHHHHhCCCEEEEecCCc-------hhhh----h
Q 010394 46 TDLVSFLQVQKITHIRLYDA----------DP------------DLLKALAKTKIRVIVSVPNN-------QLLA----I 92 (511)
Q Consensus 46 ~~vv~llk~~~i~~VRlYd~----------d~------------~vL~A~a~tgikV~vGV~n~-------~l~~----l 92 (511)
++....+|+.|++.|||.-. +| ++++.+.+.||+|++.+-.. +... .
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56778899999999999732 33 45677888999999985321 1111 1
Q ss_pred cCc----hHHHHHHHhhhcc-ccCCCceEEEEEecccccc-CCCCChhhH-HHHHHHHHHHHHhCCC
Q 010394 93 GSS----NTTAASWIGKNVI-AYYPETLITAIAVGDEVLT-TVPSSAPIL-LPAIESLYSALVAANL 152 (511)
Q Consensus 93 a~~----~~~A~~Wv~~~V~-~y~p~~~I~~I~VGNEvl~-~~~~~~~~L-vpam~nv~~aL~~~gl 152 (511)
+.. ....+.| ..|. .|-....|.+|-+=||+.. ..+..+..- -+|...|++++...-.
T Consensus 156 ~~~~~~~~~~~~~w--~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~~ 220 (407)
T COG2730 156 KEENENVEATIDIW--KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNAP 220 (407)
T ss_pred cccchhHHHHHHHH--HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcCc
Confidence 110 1222333 2222 2223457777888899984 112233333 4888888777665543
No 46
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=37.17 E-value=1.5e+02 Score=33.04 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=45.4
Q ss_pred HHHHhhhccccCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCeeEEecccc
Q 010394 100 ASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHA 163 (511)
Q Consensus 100 ~~Wv~~~V~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~ 163 (511)
++.|..-|.+|--...|.+-..-||.+-+.+.....++...+.+.+.++..+-+.-|.|+-+.+
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~s 186 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPAS 186 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCC
Confidence 4556666666644456777788899776666777788888999999998887665565555543
No 47
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=36.76 E-value=79 Score=27.84 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCeEEEe--cCC---hHHHHHHHhCCCEEE
Q 010394 46 TDLVSFLQVQKITHIRLY--DAD---PDLLKALAKTKIRVI 81 (511)
Q Consensus 46 ~~vv~llk~~~i~~VRlY--d~d---~~vL~A~a~tgikV~ 81 (511)
+++.+.++++|++.|+++ +.. ..+|++|+..|++|.
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 344567788999999988 333 379999999999875
No 48
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.73 E-value=4.5e+02 Score=28.53 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=33.6
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCcc
Q 010394 131 SSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYY 208 (511)
Q Consensus 131 ~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf 208 (511)
.+..++..+++.+|+++ . .+.+++.. +. +|| | +-...+...++|+.+.+ +-.+++|+|-
T Consensus 279 ~~~~~~~~~i~~lr~~~-----~-~i~i~~d~----Iv-G~P---g----ET~ed~~~tl~~i~~l~-~~~~~~~~~s 337 (439)
T PRK14328 279 YTREYYLELVEKIKSNI-----P-DVAITTDI----IV-GFP---G----ETEEDFEETLDLVKEVR-YDSAFTFIYS 337 (439)
T ss_pred CCHHHHHHHHHHHHHhC-----C-CCEEEEEE----EE-ECC---C----CCHHHHHHHHHHHHhcC-CCcccceEec
Confidence 45677888888877753 1 24444432 22 243 1 11245677888887654 4456777664
No 49
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.92 E-value=47 Score=35.25 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=31.0
Q ss_pred HHHHHHhCCCCeEEEecCC-hHHHHHHHhCCCEEE
Q 010394 48 LVSFLQVQKITHIRLYDAD-PDLLKALAKTKIRVI 81 (511)
Q Consensus 48 vv~llk~~~i~~VRlYd~d-~~vL~A~a~tgikV~ 81 (511)
-.|.|+..|+++|||..-+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4789999999999999999 888889999999986
No 50
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.64 E-value=51 Score=35.60 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=33.0
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHHHhCCCEEEEecC
Q 010394 49 VSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVP 85 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~vGV~ 85 (511)
+|.|+..|+++|||..-+|.=+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999999999999999984443
No 51
>PRK08815 GTP cyclohydrolase; Provisional
Probab=35.05 E-value=52 Score=35.37 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=32.6
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHHHhCCCEEEEecC
Q 010394 49 VSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVP 85 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~vGV~ 85 (511)
.|.|+..|+++||+..-+|.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999888999999999974343
No 52
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=34.12 E-value=99 Score=28.17 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=33.8
Q ss_pred CHHHHHHHHHhCCCCeEEEecC---------------------C--hHHHHHHHhCCCEEEEecC
Q 010394 44 SPTDLVSFLQVQKITHIRLYDA---------------------D--PDLLKALAKTKIRVIVSVP 85 (511)
Q Consensus 44 s~~~vv~llk~~~i~~VRlYd~---------------------d--~~vL~A~a~tgikV~vGV~ 85 (511)
+|+++++.||+.+++.|-+|.- | .++++|+...||+|++-+.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 4788899999988998888643 1 2788999999999997764
No 53
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.76 E-value=6.2e+02 Score=28.38 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=33.6
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCccc
Q 010394 131 SSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYYV 209 (511)
Q Consensus 131 ~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~ 209 (511)
.+.++.+.+++.+|+++. .|.++|.. +. +|| | +-...+...++|+.+.+ +-.+++|+|--
T Consensus 344 ~t~e~~~~~v~~lr~~~p------~i~i~tdi----Iv-GfP---g----ET~edf~~Tl~~v~~l~-~d~~~~f~ysp 403 (509)
T PRK14327 344 YTRESYLELVRKIKEAIP------NVALTTDI----IV-GFP---N----ETDEQFEETLSLYREVG-FDHAYTFIYSP 403 (509)
T ss_pred CCHHHHHHHHHHHHHhCC------CcEEeeeE----EE-eCC---C----CCHHHHHHHHHHHHHcC-CCeEEEeeeeC
Confidence 456778888888887631 25555432 22 244 1 22244677788887654 23466666533
No 54
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.65 E-value=56 Score=35.45 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHhCCCCeEEEecCChHHHHHHHhCCCEEE
Q 010394 48 LVSFLQVQKITHIRLYDADPDLLKALAKTKIRVI 81 (511)
Q Consensus 48 vv~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~ 81 (511)
-+|.|+..|+++|||..-+|.=+.++.+.||+|.
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 3788999999999999999998999999999997
No 55
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=33.58 E-value=55 Score=36.06 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=32.3
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHHHhCCCEEEEec
Q 010394 49 VSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSV 84 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~vGV 84 (511)
.|.|+..|+++|||..-+|.=+.++.+.||+|.=-+
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~v 408 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRV 408 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 689999999999999999999999999999997333
No 56
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=33.45 E-value=1e+02 Score=31.50 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=51.1
Q ss_pred ChHHHHHHHhCCCEEEEecCCch--------hhhhcCchHHHHHHHhhhccccCCCceEEEEEeccccccCCCCChhhHH
Q 010394 66 DPDLLKALAKTKIRVIVSVPNNQ--------LLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILL 137 (511)
Q Consensus 66 d~~vL~A~a~tgikV~vGV~n~~--------l~~la~~~~~A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv 137 (511)
+++++.+++..++||++.|.+.+ ...+.++++.-++ +.++|..+...-.+.+|-+-=|-+.. ......+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~-fi~~iv~~l~~~~~DGidiDwE~~~~--~d~~~~~ 123 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQR-LINNILALAKKYGYDGVNIDFENVPP--EDREAYT 123 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHH-HHHHHHHHHHHhCCCcEEEecccCCH--HHHHHHH
Confidence 35888888888999998886532 2344455433222 33333333222234555554454422 2345789
Q ss_pred HHHHHHHHHHHhCCC
Q 010394 138 PAIESLYSALVAANL 152 (511)
Q Consensus 138 pam~nv~~aL~~~gl 152 (511)
.-|+.+|.+|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987764
No 57
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=33.15 E-value=58 Score=36.78 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=33.5
Q ss_pred HHHHHHhCCCCeEEEecCChHHHHHHHhCCCEEEEecC
Q 010394 48 LVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVP 85 (511)
Q Consensus 48 vv~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~vGV~ 85 (511)
.+|.|+..|+++|||..-+|.=+.++.+.||+|.==+|
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 37899999999999999999999999999999974443
No 58
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=32.74 E-value=91 Score=28.20 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCCeEEEecCChHHHHHHHhCCCEEEEecC
Q 010394 46 TDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVP 85 (511)
Q Consensus 46 ~~vv~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~vGV~ 85 (511)
.++.++|+.+|++.|=+...-+..+.+|++.||+|..+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578999999999998888889999999999999999886
No 59
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=32.01 E-value=1e+02 Score=27.57 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCeEEEe--c--------CC---hHHHHHHHhCCCEEE
Q 010394 46 TDLVSFLQVQKITHIRLY--D--------AD---PDLLKALAKTKIRVI 81 (511)
Q Consensus 46 ~~vv~llk~~~i~~VRlY--d--------~d---~~vL~A~a~tgikV~ 81 (511)
+++++.++++|++.|+++ . +- ..+|++|+.+||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 445667788999988887 3 33 378999999999975
No 60
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.45 E-value=2.3e+02 Score=27.32 Aligned_cols=129 Identities=11% Similarity=0.106 Sum_probs=60.6
Q ss_pred HHHHHHHHHhCCCCeEEEecCCh---------HHHHHHHhCCCEEEEe--cCCchhhhhcCchHHHHHHHhhhccccCCC
Q 010394 45 PTDLVSFLQVQKITHIRLYDADP---------DLLKALAKTKIRVIVS--VPNNQLLAIGSSNTTAASWIGKNVIAYYPE 113 (511)
Q Consensus 45 ~~~vv~llk~~~i~~VRlYd~d~---------~vL~A~a~tgikV~vG--V~n~~l~~la~~~~~A~~Wv~~~V~~y~p~ 113 (511)
...+++.|.++|.++|=+..... ...++++..|+++.+- .+.............+++|++.+ +
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~- 170 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P- 170 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C-
Confidence 34556777777877776654321 2345677788776211 11111111111234556665543 1
Q ss_pred ceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCC--CCeeEEeccccccccccCCCCCcccccchhhhhhHHHHH
Q 010394 114 TLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANL--HTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQ 191 (511)
Q Consensus 114 ~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl--~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ld 191 (511)
.+++|++.|+.+. .. +.++|++.|+ .++|.|.+-+....+..-..|.-.+...+....-+..++
T Consensus 171 -~~~ai~~~~d~~a---------~g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~~ 236 (265)
T cd01543 171 -KPVGIFACTDARA---------RQ----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAAK 236 (265)
T ss_pred -CCcEEEecChHHH---------HH----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHHH
Confidence 3567777776542 22 3344555665 345766555543322222223333444443333334444
Q ss_pred HH
Q 010394 192 FL 193 (511)
Q Consensus 192 fL 193 (511)
.|
T Consensus 237 ~l 238 (265)
T cd01543 237 LL 238 (265)
T ss_pred HH
Confidence 43
No 61
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.11 E-value=28 Score=30.12 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=11.4
Q ss_pred CCCCchhHHHHHHH-HHhhcc
Q 010394 1 MENPKLTLFIIFYF-TVLNTA 20 (511)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~ 20 (511)
|+ ||..|||.++| .+|.++
T Consensus 1 Ma-SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHH
Confidence 77 88766665555 344433
No 62
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=31.08 E-value=5.2e+02 Score=25.39 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC-----------hHHHHHHHhCCCEEEEecCCch---hhh--hcCchHHHHHHHhhh
Q 010394 43 LSPTDLVSFLQVQKITHIRLYDAD-----------PDLLKALAKTKIRVIVSVPNNQ---LLA--IGSSNTTAASWIGKN 106 (511)
Q Consensus 43 ps~~~vv~llk~~~i~~VRlYd~d-----------~~vL~A~a~tgikV~vGV~n~~---l~~--la~~~~~A~~Wv~~~ 106 (511)
|++ ...+.||+.+...|=.|=++ +.=++.+...|++|+. |++.. ... .+.-...|.+-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 454 56777888888877777433 2557888899999875 34321 111 111223444444444
Q ss_pred ccccCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCC
Q 010394 107 VIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLH 153 (511)
Q Consensus 107 V~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl~ 153 (511)
..-=.|...+.++.|=...... .-...++|+++-+.++|...||.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~~--~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALDD--EVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCcc--hhHHHHHHHHHHHHHHHHhcCCc
Confidence 4433566667788876554322 23468999999999999999875
No 63
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=30.34 E-value=1e+02 Score=30.67 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCEEEEecCCch---hhhhcCchHHHHHHHhhhccccCCCceEEEEEeccccccCCCCChhhHHHHHHHHH
Q 010394 68 DLLKALAKTKIRVIVSVPNNQ---LLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLY 144 (511)
Q Consensus 68 ~vL~A~a~tgikV~vGV~n~~---l~~la~~~~~A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~ 144 (511)
..+++++..|+||++.|.+.. ...+..+++..+++++ ++..++..-.+.+|-+==|-.... ....+..|+++|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~-~lv~~~~~~~~DGIdiDwE~~~~~---~~~~~~fv~~Lr 125 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVD-KIINYVVSYNLDGIDVDLEGPDVT---FGDYLVFIRALY 125 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHH-HHHHHHHHhCCCceeEEeeccCcc---HhHHHHHHHHHH
Confidence 456677778999998886532 2234445544444433 333332212344444443433211 356788899999
Q ss_pred HHHHhCCC
Q 010394 145 SALVAANL 152 (511)
Q Consensus 145 ~aL~~~gl 152 (511)
++|++.|+
T Consensus 126 ~~l~~~~~ 133 (253)
T cd06545 126 AALKKEGK 133 (253)
T ss_pred HHHhhcCc
Confidence 99988664
No 64
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=30.24 E-value=4.2e+02 Score=28.57 Aligned_cols=61 Identities=21% Similarity=0.216 Sum_probs=35.3
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCcccc
Q 010394 131 SSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYYVF 210 (511)
Q Consensus 131 ~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~ 210 (511)
.+..+++.+++.+|++. . .+.|++.. +. +|| | +-...+...++|+.+.+ +-.+++++|-.+
T Consensus 267 ~~~~~~~~~i~~l~~~~----~--~i~i~~~~----I~-G~P---g----ET~e~~~~t~~fl~~~~-~~~~~~~~~sp~ 327 (430)
T TIGR01125 267 GSGEQQLDFIERLREKC----P--DAVLRTTF----IV-GFP---G----ETEEDFQELLDFVEEGQ-FDRLGAFTYSPE 327 (430)
T ss_pred CCHHHHHHHHHHHHHhC----C--CCeEeEEE----EE-ECC---C----CCHHHHHHHHHHHHhcC-CCEEeeeeccCC
Confidence 45567888888887652 1 23344332 22 233 1 22355788999998765 445678877543
No 65
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=29.83 E-value=1.4e+02 Score=25.92 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=35.3
Q ss_pred HHHHHhhccccCCCCCCCceeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEe
Q 010394 12 FYFTVLNTAKAADPDKEPFVGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLY 63 (511)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~GvnYg~~~~nlps~~~vv~llk~~~i~~VRlY 63 (511)
+++++|.+.+--.. ..+.+-|.-...+.+.++.+++.+.|++.||..-++-
T Consensus 16 l~~~~lyALPnlyg-e~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~ 66 (101)
T PF13721_consen 16 LLLGALYALPNLYG-EDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIE 66 (101)
T ss_pred HHHHHHHHhhhccC-CCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEE
Confidence 33466666653222 4455778777777788888899999999998765554
No 66
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.81 E-value=2.7e+02 Score=30.52 Aligned_cols=135 Identities=14% Similarity=0.194 Sum_probs=66.6
Q ss_pred CHHHHHHH---HHhCCCCeEEEecCC--------------hHHHHHHHh-CCC-EEEEecCCchhhhhcCchHHHHHHHh
Q 010394 44 SPTDLVSF---LQVQKITHIRLYDAD--------------PDLLKALAK-TKI-RVIVSVPNNQLLAIGSSNTTAASWIG 104 (511)
Q Consensus 44 s~~~vv~l---lk~~~i~~VRlYd~d--------------~~vL~A~a~-tgi-kV~vGV~n~~l~~la~~~~~A~~Wv~ 104 (511)
++++|++. |...|++.|.+.+.+ .++|+++.. .|+ ++-++..+.. .+. .+..+ .++
T Consensus 185 ~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~--~i~--~ell~-~l~ 259 (459)
T PRK14338 185 PLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPA--WMT--DRLIH-AVA 259 (459)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChh--hcC--HHHHH-HHh
Confidence 56777654 444789999988732 146777776 354 3433322211 111 11111 111
Q ss_pred hhccccCCCceEEEEEe----cccccc---CCCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCccc
Q 010394 105 KNVIAYYPETLITAIAV----GDEVLT---TVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAF 177 (511)
Q Consensus 105 ~~V~~y~p~~~I~~I~V----GNEvl~---~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~ 177 (511)
. . + ..+..+.+ |++.+. +...+..+.+.+++.+|+++ . .|.+++.. +. ++| |
T Consensus 260 ~----~-~-~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~-----p-gi~i~~d~----Iv-G~P---g- 318 (459)
T PRK14338 260 R----L-P-KCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAI-----P-DVSLTTDI----IV-GHP---G- 318 (459)
T ss_pred c----c-c-ccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhC-----C-CCEEEEEE----EE-ECC---C-
Confidence 1 1 1 11334444 332222 12345677888888887652 1 24454432 21 233 1
Q ss_pred ccchhhhhhHHHHHHHhhcCCCcccccCCcc
Q 010394 178 FNQSLSSVMLPLLQFLSKTGAPLMMNLYPYY 208 (511)
Q Consensus 178 F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf 208 (511)
+-...+...++|+.+.+ +-.+++++|-
T Consensus 319 ---ET~ed~~~ti~~l~~l~-~~~v~i~~ys 345 (459)
T PRK14338 319 ---ETEEQFQRTYDLLEEIR-FDKVHIAAYS 345 (459)
T ss_pred ---CCHHHHHHHHHHHHHcC-CCEeEEEecC
Confidence 11245677888987654 3345666663
No 67
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=29.54 E-value=93 Score=34.01 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCC
Q 010394 133 APILLPAIESLYSALVAANLH 153 (511)
Q Consensus 133 ~~~Lvpam~nv~~aL~~~gl~ 153 (511)
....+.-++.+.+.|.++||.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 346677778889999999995
No 68
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.26 E-value=2.3e+02 Score=31.15 Aligned_cols=127 Identities=24% Similarity=0.325 Sum_probs=71.9
Q ss_pred ceeEEecCCCCCCCC----HHHHHHHHHh-CCCCeEEEecCCh-----HHHHHHHhC-CCEEEEecCCchhhhhcCchHH
Q 010394 30 FVGVNIGTDVSNLLS----PTDLVSFLQV-QKITHIRLYDADP-----DLLKALAKT-KIRVIVSVPNNQLLAIGSSNTT 98 (511)
Q Consensus 30 ~~GvnYg~~~~nlps----~~~vv~llk~-~~i~~VRlYd~d~-----~vL~A~a~t-gikV~vGV~n~~l~~la~~~~~ 98 (511)
.+|.|-+.||.|++. -.++++.|.+ .|+.+||+=..+| ++++|++.+ .+-=.+-+|.+ + .+
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ---s--Gs--- 266 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ---S--GS--- 266 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc---c--CC---
Confidence 468898899888763 3344433332 5688999887665 788888864 33223434321 0 01
Q ss_pred HHHHHhhhccccCCCceEEEEEecccccc--CCCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcc
Q 010394 99 AASWIGKNVIAYYPETLITAIAVGDEVLT--TVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQA 176 (511)
Q Consensus 99 A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~--~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g 176 (511)
|++|. +-..+..+.+.-++.+|+++....++..|-|+ || |
T Consensus 267 ------------------------d~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVG-----------FP---g 308 (437)
T COG0621 267 ------------------------DRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVG-----------FP---G 308 (437)
T ss_pred ------------------------HHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEE-----------CC---C
Confidence 12221 11235667788888888876544333333333 55 2
Q ss_pred cccchhhhhhHHHHHHHhhcCCCcccccCCc
Q 010394 177 FFNQSLSSVMLPLLQFLSKTGAPLMMNLYPY 207 (511)
Q Consensus 177 ~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPy 207 (511)
. -.......++|+.+.. +=.+|+++|
T Consensus 309 E----TeedFe~tl~lv~e~~-fd~~~~F~Y 334 (437)
T COG0621 309 E----TEEDFEETLDLVEEVR-FDRLHVFKY 334 (437)
T ss_pred C----CHHHHHHHHHHHHHhC-CCEEeeeec
Confidence 2 1233566777776544 446788887
No 69
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=28.19 E-value=80 Score=33.39 Aligned_cols=143 Identities=13% Similarity=0.181 Sum_probs=75.7
Q ss_pred ecCCCCCCCCHHHH---HHHHHhCCCCeEEEecC------------ChHHHHHHHhCCCEEEE--------ecCCchhhh
Q 010394 35 IGTDVSNLLSPTDL---VSFLQVQKITHIRLYDA------------DPDLLKALAKTKIRVIV--------SVPNNQLLA 91 (511)
Q Consensus 35 Yg~~~~nlps~~~v---v~llk~~~i~~VRlYd~------------d~~vL~A~a~tgikV~v--------GV~n~~l~~ 91 (511)
|-|.|=| |+++|. ++.+|++ +..-+||. |.-.++-+-..|++++| |++|+....
T Consensus 188 hNPTGmD-PT~EQW~qia~vik~k--~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGn 264 (410)
T KOG1412|consen 188 HNPTGMD-PTREQWKQIADVIKSK--NLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGN 264 (410)
T ss_pred cCCCCCC-CCHHHHHHHHHHHHhc--CceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccc
Confidence 7777766 677765 4556654 34555643 34678888889999886 556653321
Q ss_pred h---cCchHHHHHHHhhhccc----c--CC---CceEEEEEeccccccCCC------CChhhHHHHHHHHHHHHHhCCCC
Q 010394 92 I---GSSNTTAASWIGKNVIA----Y--YP---ETLITAIAVGDEVLTTVP------SSAPILLPAIESLYSALVAANLH 153 (511)
Q Consensus 92 l---a~~~~~A~~Wv~~~V~~----y--~p---~~~I~~I~VGNEvl~~~~------~~~~~Lvpam~nv~~aL~~~gl~ 153 (511)
+ ..+++ ...-|+..+.- - .| +.+|. -|+|.... .+...+...|+++|++|++.
T Consensus 265 ltvv~~n~a-~i~~v~SQl~lviR~~~SNPPAyGArIV-----~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~--- 335 (410)
T KOG1412|consen 265 LTVVVNNPA-VIAGVKSQLTLVIRSNWSNPPAYGARIV-----HKVLSTPELREQWIQSIKTMSSRIKKMRTALRDH--- 335 (410)
T ss_pred eEEEecChh-HHHHHHHHHHHHHhhccCCCcchhhHHH-----HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1 11111 11111111110 0 11 11221 23443211 12345677888999999764
Q ss_pred CeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhc
Q 010394 154 TQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKT 196 (511)
Q Consensus 154 ~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t 196 (511)
-+...||-+||-+.+. .|.|.= ...--..||+|.++
T Consensus 336 -L~aL~TPGtWDHI~~Q----iGMFSy--TGLtp~qV~~li~~ 371 (410)
T KOG1412|consen 336 -LVALKTPGTWDHITQQ----IGMFSY--TGLTPAQVDHLIEN 371 (410)
T ss_pred -HHhcCCCCcHHHHHhh----ccceee--cCCCHHHHHHHHHh
Confidence 2678999999888752 355521 12223467887543
No 70
>PRK07198 hypothetical protein; Validated
Probab=28.00 E-value=52 Score=35.59 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=32.8
Q ss_pred HHHHHhCCCCeE-EEecCChHHHHHHHhCCCEEEEecC
Q 010394 49 VSFLQVQKITHI-RLYDADPDLLKALAKTKIRVIVSVP 85 (511)
Q Consensus 49 v~llk~~~i~~V-RlYd~d~~vL~A~a~tgikV~vGV~ 85 (511)
.|.|+.+|+++| |+...++.=+.++.+.||+|.==|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 688999999999 9999999899999999999984443
No 71
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=27.91 E-value=1.6e+02 Score=29.19 Aligned_cols=44 Identities=16% Similarity=0.368 Sum_probs=25.9
Q ss_pred HHhhCCCCceEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 010394 257 MKNLNITDVMVLVTESGWPSKGDSKE---PYATIDNADTYNSNLIKHILD 303 (511)
Q Consensus 257 m~k~g~~~~~VvVsETGWPS~G~~~~---~~as~~NA~~y~~~li~~~~~ 303 (511)
...+++++++|+. .|||.|...+ ...+...++....++++.+..
T Consensus 42 ~~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 42 AHDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 3456677766655 5999997432 123444445555666666654
No 72
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=27.81 E-value=2.1e+02 Score=25.24 Aligned_cols=122 Identities=14% Similarity=0.146 Sum_probs=62.0
Q ss_pred HHHHHhCCCCeEEEecCCh----------HHHHHHHhCCCEEEEecCCchhhhhcCchHHHHHHHhhhccccCCCceEEE
Q 010394 49 VSFLQVQKITHIRLYDADP----------DLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITA 118 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d~----------~vL~A~a~tgikV~vGV~n~~l~~la~~~~~A~~Wv~~~V~~y~p~~~I~~ 118 (511)
++.|.++|.++|-+..... ...+++++.|++...-.......... .......|+++. . .++
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~----pda 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----R----PDA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----S----SSE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----C----CcE
Confidence 3556678899988887431 35578888999865433211110000 111223366543 2 248
Q ss_pred EEeccccccCCCCChhhHHHHHHHHHHHHHhCCC--CCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHH
Q 010394 119 IAVGDEVLTTVPSSAPILLPAIESLYSALVAANL--HTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFL 193 (511)
Q Consensus 119 I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl--~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL 193 (511)
|+++|+.+.. .+..+|++.|+ .++|.|-+-.........+ |.-..+..+....-...++.|
T Consensus 72 ii~~~~~~a~-------------~~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~-p~it~i~~~~~~~g~~a~~~l 134 (160)
T PF13377_consen 72 IICSNDRLAL-------------GVLRALRELGIRVPQDISVVSFDDSPLLEFFS-PPITTIDQDPREMGREAVELL 134 (160)
T ss_dssp EEESSHHHHH-------------HHHHHHHHTTSCTTTTSEEEEESSSGHHHCSS-STSEEEEE-HHHHHHHHHHHH
T ss_pred EEEcCHHHHH-------------HHHHHHHHcCCcccccccEEEecCcHHHHHHc-CCCceecCCHHHHHHHHHHHH
Confidence 8888886421 23355666676 3456666655433332223 344455555544333444433
No 73
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=27.31 E-value=5.2e+02 Score=25.15 Aligned_cols=99 Identities=14% Similarity=0.223 Sum_probs=58.2
Q ss_pred CHHHHHHHHHhCCCCeEEEe-cC-C--hHHHHHHHhCCCEEEEecCCchhhhhcCchHHHHHHHhhhccccCCC-ceEEE
Q 010394 44 SPTDLVSFLQVQKITHIRLY-DA-D--PDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPE-TLITA 118 (511)
Q Consensus 44 s~~~vv~llk~~~i~~VRlY-d~-d--~~vL~A~a~tgikV~vGV~n~~l~~la~~~~~A~~Wv~~~V~~y~p~-~~I~~ 118 (511)
.|.+.++.++..|.+.|=+= .+ + .++++.++..|+++-|.+..+. .. ..+.+|.+. +.|.-
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T------~~--------~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET------PV--------EELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-------G--------GGGTTTGCCSSEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC------Cc--------hHHHHHhhhcCEEEE
Confidence 46777777777777755332 22 1 2788999999999988885321 11 123344443 23333
Q ss_pred EEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCeeEE
Q 010394 119 IAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKI 158 (511)
Q Consensus 119 I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkV 158 (511)
.+| |+=..++...+..+..|+.+|+.+.+.|++-.|-|
T Consensus 134 MsV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v 171 (201)
T PF00834_consen 134 MSV--EPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEV 171 (201)
T ss_dssp ESS---TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEE
T ss_pred EEe--cCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 332 33234455567899999999999999887644433
No 74
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.20 E-value=3.6e+02 Score=29.16 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=40.8
Q ss_pred EEEEEeccccccC-------CCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHH
Q 010394 116 ITAIAVGDEVLTT-------VPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLP 188 (511)
Q Consensus 116 I~~I~VGNEvl~~-------~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~ 188 (511)
..++.+|=|-... ...+..+...+++.+|+.+ . .|.|++.. +. +|| .+-...+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----~-~i~i~~d~----Iv-GfP-------gET~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV-----P-DASISSDI----IV-GFP-------TETEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----C-CCEEEEEE----EE-ECC-------CCCHHHHHH
Confidence 3456666554322 1235567777777777652 1 25555543 22 244 122345778
Q ss_pred HHHHHhhcCCCcccccCCcc
Q 010394 189 LLQFLSKTGAPLMMNLYPYY 208 (511)
Q Consensus 189 ~ldfL~~t~sp~~vNiyPyf 208 (511)
.++|+.+.+ +-.+++|+|-
T Consensus 312 tl~fi~~~~-~~~~~~~~~s 330 (434)
T PRK14330 312 TVDLVEKAQ-FERLNLAIYS 330 (434)
T ss_pred HHHHHHhcC-CCEEeeeecc
Confidence 899988765 3345666664
No 75
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=27.08 E-value=1.4e+02 Score=27.50 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCeEEEe--c--------CCh---HHHHHHHhCCCEEE
Q 010394 46 TDLVSFLQVQKITHIRLY--D--------ADP---DLLKALAKTKIRVI 81 (511)
Q Consensus 46 ~~vv~llk~~~i~~VRlY--d--------~d~---~vL~A~a~tgikV~ 81 (511)
+++++.++++|++.|+++ . .-+ .+|++|+..||+|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 445677788999988887 3 333 79999999999975
No 76
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.02 E-value=4.9e+02 Score=28.17 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=33.0
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCc
Q 010394 132 SAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPY 207 (511)
Q Consensus 132 ~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPy 207 (511)
+.++.+.+++.+|++.. .+.++|. ++. +|| .+-...+...++|+.+.+- -.+++|+|
T Consensus 263 t~~~~~~~v~~lr~~~p------~i~i~~d----~Iv-GfP-------gETeedf~~Tl~fl~~l~~-~~~~~f~~ 319 (420)
T PRK14339 263 TKEWFLNRAEKLRALVP------EVSISTD----IIV-GFP-------GESDKDFEDTMDVLEKVRF-EQIFSFKY 319 (420)
T ss_pred CHHHHHHHHHHHHHHCC------CCEEEEE----EEE-ECC-------CCCHHHHHHHHHHHHhcCC-CEEeeEec
Confidence 46677888888887531 2555553 232 344 1223457788899876542 23566664
No 77
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=27.00 E-value=1.1e+02 Score=26.91 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCeEEEe--cCC---hHHHHHHHhCCCEEEE
Q 010394 47 DLVSFLQVQKITHIRLY--DAD---PDLLKALAKTKIRVIV 82 (511)
Q Consensus 47 ~vv~llk~~~i~~VRlY--d~d---~~vL~A~a~tgikV~v 82 (511)
.+.+.+++.|++.|+++ +.. ..+|++|+.+|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566777899988888 333 3789999999999753
No 78
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=26.55 E-value=1.3e+02 Score=27.12 Aligned_cols=44 Identities=30% Similarity=0.391 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC-----hHHHHHHHhCCCEEEEecCC
Q 010394 43 LSPTDLVSFLQVQKITHIRLYDAD-----PDLLKALAKTKIRVIVSVPN 86 (511)
Q Consensus 43 ps~~~vv~llk~~~i~~VRlYd~d-----~~vL~A~a~tgikV~vGV~n 86 (511)
.+++++++..++.|++.|=|=|-+ ++..+.++..||+|++|+--
T Consensus 16 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 16 DSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 388999999999999999888765 35667777899999999964
No 79
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=26.38 E-value=1.6e+02 Score=27.77 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=46.6
Q ss_pred HHHHHHHhC--CCEEEEecCCchhh---hhcCchHHHHHHHhhhccccCCCceEEEEEeccccccCCC-CChhhHHHHHH
Q 010394 68 DLLKALAKT--KIRVIVSVPNNQLL---AIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVP-SSAPILLPAIE 141 (511)
Q Consensus 68 ~vL~A~a~t--gikV~vGV~n~~l~---~la~~~~~A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~~~~-~~~~~Lvpam~ 141 (511)
.-++.++.. |+||++.|...... .++.+++..++. .+++..+...-++.+|-+==|-..... .....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f-~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAF-ANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHH-HHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 456666665 99999998753221 234444433333 222333322224555554334332211 12568999999
Q ss_pred HHHHHHHhCCC
Q 010394 142 SLYSALVAANL 152 (511)
Q Consensus 142 nv~~aL~~~gl 152 (511)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999977654
No 80
>CHL00041 rps11 ribosomal protein S11
Probab=25.68 E-value=1.6e+02 Score=26.34 Aligned_cols=35 Identities=9% Similarity=0.223 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCCeEEEe--cCC---hHHHHHHHhCCCEEE
Q 010394 47 DLVSFLQVQKITHIRLY--DAD---PDLLKALAKTKIRVI 81 (511)
Q Consensus 47 ~vv~llk~~~i~~VRlY--d~d---~~vL~A~a~tgikV~ 81 (511)
++.+.+++.|++.|+++ +.. ..++++|+..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 34566777899988888 332 378999999999975
No 81
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=25.45 E-value=5.5e+02 Score=23.86 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhC--CCCeEEEecCCh-------HHHHHHHhCCCEEEEe
Q 010394 42 LLSPTDLVSFLQVQ--KITHIRLYDADP-------DLLKALAKTKIRVIVS 83 (511)
Q Consensus 42 lps~~~vv~llk~~--~i~~VRlYd~d~-------~vL~A~a~tgikV~vG 83 (511)
..++++++++++.. .+..|.+.+-+| ++++.+++.|+++.+-
T Consensus 46 ~~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~ 96 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLD 96 (191)
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEE
Confidence 35788888887653 368899987654 5677788888876553
No 82
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.28 E-value=2e+02 Score=26.03 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC-------hHHHHHHHhC---CCEEEEe--cCCc
Q 010394 43 LSPTDLVSFLQVQKITHIRLYDAD-------PDLLKALAKT---KIRVIVS--VPNN 87 (511)
Q Consensus 43 ps~~~vv~llk~~~i~~VRlYd~d-------~~vL~A~a~t---gikV~vG--V~n~ 87 (511)
.+++++++..++.+.+.|=|-..+ +.++++++.. .++|++| ++++
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~ 96 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQ 96 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChH
Confidence 477888888877777777776655 3667777765 4678888 5543
No 83
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.26 E-value=7.4e+02 Score=25.28 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCccccccCCCCcc
Q 010394 139 AIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYYVFMQNKGVVP 218 (511)
Q Consensus 139 am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~i~ 218 (511)
.+-+-+....+.|.. -| |+-....+--...+|...+.+.++..+-++++++.+.+.++.+.+-++.-=. ...+ ...
T Consensus 34 ~~~~~y~~ra~gg~g-li-i~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~-~~~~-~~~ 109 (327)
T cd02803 34 ELIEYYEERAKGGVG-LI-ITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGR-QAQP-NLT 109 (327)
T ss_pred HHHHHHHHHhCcCCc-EE-EECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCc-CCCC-cCC
Confidence 333444444443332 13 3333333333334677778888887788999999999999988887742110 0000 000
Q ss_pred CccccccCC--C--CCCceecCCCccccchHHHHHHHHHHHHHHhhCCCCceEEEeeec-------cCCCCC-CCCCCCC
Q 010394 219 LDNSLFKPL--T--PSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVMVLVTESG-------WPSKGD-SKEPYAT 286 (511)
Q Consensus 219 ldyAlF~~~--~--~~~~~~d~~~~~~Y~Nlfda~vDav~~am~k~g~~~~~VvVsETG-------WPS~G~-~~~~~as 286 (511)
-. ....+. + .........+...-..+.+...++...+ +++||..++|..+ -| .|..-. ..+.+.+
T Consensus 110 ~~-~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a-~~aGfDgveih~~-~gyL~~qFlsp~~n~R~d~yGgs 186 (327)
T cd02803 110 GG-PPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRA-KEAGFDGVEIHGA-HGYLLSQFLSPYTNKRTDEYGGS 186 (327)
T ss_pred CC-CccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEEcch-hhhHHHHhcCccccCCCcccCCC
Confidence 00 000000 0 0000111112122234555556666555 4579999999875 23 354222 2345788
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 010394 287 IDNADTYNSNLIKHILDRSG 306 (511)
Q Consensus 287 ~~NA~~y~~~li~~~~~~~G 306 (511)
++|-.+|....++.+++..|
T Consensus 187 ~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 187 LENRARFLLEIVAAVREAVG 206 (327)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999987544
No 84
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.85 E-value=4e+02 Score=28.81 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=34.3
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCcc
Q 010394 131 SSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYY 208 (511)
Q Consensus 131 ~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf 208 (511)
....++..+++.+|+++ . .+.++|.. +. +|| | +-...+...++|+.+.+ +-.+++++|-
T Consensus 256 ~~~~~~~~~i~~lr~~~-----p-gi~i~~d~----Iv-GfP---G----ET~edf~~tl~fi~~~~-~~~~~v~~ys 314 (418)
T PRK14336 256 YTNQQYRELVERLKTAM-----P-DISLQTDL----IV-GFP---S----ETEEQFNQSYKLMADIG-YDAIHVAAYS 314 (418)
T ss_pred CCHHHHHHHHHHHHhhC-----C-CCEEEEEE----EE-ECC---C----CCHHHHHHHHHHHHhcC-CCEEEeeecC
Confidence 45677888888888763 2 24454433 22 244 1 22245678889988754 3346666664
No 85
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.07 E-value=1.3e+02 Score=28.22 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=32.4
Q ss_pred EEEe-cCCh-----HHHHHHHhCCCEEEEecCCchhh----------hhcCchHHHHHHHhhhcccc
Q 010394 60 IRLY-DADP-----DLLKALAKTKIRVIVSVPNNQLL----------AIGSSNTTAASWIGKNVIAY 110 (511)
Q Consensus 60 VRlY-d~d~-----~vL~A~a~tgikV~vGV~n~~l~----------~la~~~~~A~~Wv~~~V~~y 110 (511)
++|| |+|. .+.+++..+|++|++ |.|..+. -+....++|+.|+..+..+.
T Consensus 2 ~~I~VDADACPVk~~i~r~A~r~~~~v~~-Van~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~g 67 (150)
T COG1671 2 MTIWVDADACPVKDEIYRVAERMGLKVTF-VANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKG 67 (150)
T ss_pred ceEEEeCCCCchHHHHHHHHHHhCCeEEE-EeCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCC
Confidence 4567 7772 677888889999876 3332221 23344578899988877654
No 86
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=23.96 E-value=2.4e+02 Score=28.91 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=44.4
Q ss_pred HHHHHh--CCCEEEEecCC----chhhhhcCchHHHHHHHhhhccccCCCceEEEEEeccccccCCCCChhhHHHHHHHH
Q 010394 70 LKALAK--TKIRVIVSVPN----NQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESL 143 (511)
Q Consensus 70 L~A~a~--tgikV~vGV~n----~~l~~la~~~~~A~~Wv~~~V~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv 143 (511)
+.+++. .++||++.|.. +....+..+.+..++. .++|..+...-...+|-+==|-..........++..|+.+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~f-i~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKF-IDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHH-HHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 555665 49999998864 2344455554333332 2333333222245666654343322112345788999999
Q ss_pred HHHHHhC
Q 010394 144 YSALVAA 150 (511)
Q Consensus 144 ~~aL~~~ 150 (511)
|++|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999864
No 87
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=23.90 E-value=4.9e+02 Score=28.67 Aligned_cols=115 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHH--hCCCEEEEecC----CchhhhhcCchHHHHHHHhhhcccc-------------CCCceEEEEEeccccccC
Q 010394 68 DLLKALA--KTKIRVIVSVP----NNQLLAIGSSNTTAASWIGKNVIAY-------------YPETLITAIAVGDEVLTT 128 (511)
Q Consensus 68 ~vL~A~a--~tgikV~vGV~----n~~l~~la~~~~~A~~Wv~~~V~~y-------------~p~~~I~~I~VGNEvl~~ 128 (511)
..|..++ ...+|+.+.|- .+....++.+.+.-+.-++..|.=. ||.. .|++.-.+
T Consensus 115 ~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~------~~~~~~~~ 188 (441)
T COG3325 115 GALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGS------GGDAGNCG 188 (441)
T ss_pred HHHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCC------CCCCCCCC
Q ss_pred CCCChhhHHHHHHHHHHHHHhCCCCC--eeEEeccccccccccCCCCCcccccchh-hhhhHHHHHHHhhcCCCcccccC
Q 010394 129 VPSSAPILLPAIESLYSALVAANLHT--QIKISTPHAASIILDPFPPSQAFFNQSL-SSVMLPLLQFLSKTGAPLMMNLY 205 (511)
Q Consensus 129 ~~~~~~~Lvpam~nv~~aL~~~gl~~--~IkVsT~~~~~vl~~s~pPS~g~F~~~~-~~~~~~~ldfL~~t~sp~~vNiy 205 (511)
.....+..+-.|+.||++|.+++.+. +..+|++. |++......+ ...|.+.||| ||+-
T Consensus 189 ~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~----------~as~~~l~~~~~~~~~~~vDy---------iNiM 249 (441)
T COG3325 189 RPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAA----------PASKDKLEGLNHAEIAQYVDY---------INIM 249 (441)
T ss_pred CcccHHHHHHHHHHHHHHHhhcccccCceEEEEEec----------CCchhhhhcccHHHHHHHHhh---------hhee
Q ss_pred Cc
Q 010394 206 PY 207 (511)
Q Consensus 206 Py 207 (511)
-|
T Consensus 250 TY 251 (441)
T COG3325 250 TY 251 (441)
T ss_pred ee
No 88
>PRK05309 30S ribosomal protein S11; Validated
Probab=23.72 E-value=1.8e+02 Score=26.50 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCeEEEec--CC---hHHHHHHHhCCCEEE
Q 010394 47 DLVSFLQVQKITHIRLYD--AD---PDLLKALAKTKIRVI 81 (511)
Q Consensus 47 ~vv~llk~~~i~~VRlYd--~d---~~vL~A~a~tgikV~ 81 (511)
.+.+.++++|++.|+++= .. ..+|++|+..|++|.
T Consensus 68 ~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 68 DAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345667789999999993 33 378999999999865
No 89
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.05 E-value=1e+03 Score=26.06 Aligned_cols=138 Identities=21% Similarity=0.309 Sum_probs=70.4
Q ss_pred CCHHHHHHH---HHhCCCCeEEEecCC-----------hHHHHHHHhC-CC-EEEEecCCchhhhhcCchHHHHHHHhhh
Q 010394 43 LSPTDLVSF---LQVQKITHIRLYDAD-----------PDLLKALAKT-KI-RVIVSVPNNQLLAIGSSNTTAASWIGKN 106 (511)
Q Consensus 43 ps~~~vv~l---lk~~~i~~VRlYd~d-----------~~vL~A~a~t-gi-kV~vGV~n~~l~~la~~~~~A~~Wv~~~ 106 (511)
-++++|++. |...|++.|.+.|.| ++.|+++... ++ ++-++..+.. .+. .+. .+.+++.
T Consensus 183 r~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~--~~~--~el-l~~m~~~ 257 (449)
T PRK14332 183 RDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPK--DFP--DHL-LSLMAKN 257 (449)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcc--cCC--HHH-HHHHHhC
Confidence 357787654 445789999888654 2455555432 32 2333332211 111 111 1112211
Q ss_pred ccccCCCceEEEEEec-----ccccc--CCCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCccccc
Q 010394 107 VIAYYPETLITAIAVG-----DEVLT--TVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFN 179 (511)
Q Consensus 107 V~~y~p~~~I~~I~VG-----NEvl~--~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~ 179 (511)
+ ....+|.+| +++|. +...+..+...+++.+|++.. .+.++|. ++. +|| |
T Consensus 258 -----~-~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td----~Iv-GfP---g--- 314 (449)
T PRK14332 258 -----P-RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTD----IIV-GFP---N--- 314 (449)
T ss_pred -----C-CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEE----EEe-eCC---C---
Confidence 1 124567777 44442 223466788888888887632 2444442 232 244 1
Q ss_pred chhhhhhHHHHHHHhhcCCCcccccCCcccc
Q 010394 180 QSLSSVMLPLLQFLSKTGAPLMMNLYPYYVF 210 (511)
Q Consensus 180 ~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~ 210 (511)
+-...+...++|+.+.+ +=.+++|+|-..
T Consensus 315 -ET~edf~~tl~~v~~l~-~~~~~~f~ys~~ 343 (449)
T PRK14332 315 -ETEEEFEDTLAVVREVQ-FDMAFMFKYSER 343 (449)
T ss_pred -CCHHHHHHHHHHHHhCC-CCEEEEEEecCC
Confidence 22345677888887655 335777776443
No 90
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=22.82 E-value=1.5e+02 Score=28.97 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=34.7
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHHHhCCCEEEEecCCc
Q 010394 49 VSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNN 87 (511)
Q Consensus 49 v~llk~~~i~~VRlYd~d~~vL~A~a~tgikV~vGV~n~ 87 (511)
+|.|+..||++||+-..+|.=..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578999999999999999999999999999998777643
No 91
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=22.03 E-value=2.1e+02 Score=27.60 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhh-HHHHHHHhhcCCCccccc
Q 010394 136 LLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVM-LPLLQFLSKTGAPLMMNL 204 (511)
Q Consensus 136 Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~-~~~ldfL~~t~sp~~vNi 204 (511)
.-.+++.+.+.+...|+.+ ||+...... +.| + .+.. .++++.+.+.+-|+++++
T Consensus 83 ~~~~~~~l~~~~~~~g~~G-v~l~~~~~~------~~~-------~-~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRG-VKLHPDLGG------FDP-------D-DPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHHHTTTESE-EEEESSETT------CCT-------T-SGHCHHHHHHHHHHHT-EEEEEE
T ss_pred chhHHHHHHHhccccceee-eEecCCCCc------ccc-------c-cHHHHHHHHHHHHhhccceeeec
Confidence 3468888889898999876 887654321 111 1 1223 489999999998887774
No 92
>PLN03059 beta-galactosidase; Provisional
Probab=21.83 E-value=1.4e+03 Score=27.38 Aligned_cols=114 Identities=10% Similarity=-0.037 Sum_probs=69.3
Q ss_pred HHHHHHHhCCCCeEEEecC------C------------hHHHHHHHhCCCEEEEec---------------CCchhhh--
Q 010394 47 DLVSFLQVQKITHIRLYDA------D------------PDLLKALAKTKIRVIVSV---------------PNNQLLA-- 91 (511)
Q Consensus 47 ~vv~llk~~~i~~VRlYd~------d------------~~vL~A~a~tgikV~vGV---------------~n~~l~~-- 91 (511)
+.++.+|+.|++.|-+|-. . ..-|+.+++.|+.|++=. |.-..+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 4566778899999999932 1 246788889999999744 1100111
Q ss_pred h-cCch---HHHHHHHhhhcccc-------CCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCeeEEec
Q 010394 92 I-GSSN---TTAASWIGKNVIAY-------YPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKIST 160 (511)
Q Consensus 92 l-a~~~---~~A~~Wv~~~V~~y-------~p~~~I~~I~VGNEvl~~~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT 160 (511)
+ ..++ ++.++|+..-+... -.+-.|..+=|-||-=.-....-..=..+|+.+++.++++|+. |+.-|
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t 220 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTG--VPWVM 220 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCC--cceEE
Confidence 1 1122 45667765543222 1245799999999942210000112367999999999999985 66555
Q ss_pred cc
Q 010394 161 PH 162 (511)
Q Consensus 161 ~~ 162 (511)
.+
T Consensus 221 ~d 222 (840)
T PLN03059 221 CK 222 (840)
T ss_pred CC
Confidence 54
No 93
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=21.56 E-value=8.6e+02 Score=26.11 Aligned_cols=136 Identities=16% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCHHHHHHHH---HhCCCCeEEEecCC--------------hHHHHHHHhC-CCE-EEEecCCchhhhhcCchHHHHHHH
Q 010394 43 LSPTDLVSFL---QVQKITHIRLYDAD--------------PDLLKALAKT-KIR-VIVSVPNNQLLAIGSSNTTAASWI 103 (511)
Q Consensus 43 ps~~~vv~ll---k~~~i~~VRlYd~d--------------~~vL~A~a~t-gik-V~vGV~n~~l~~la~~~~~A~~Wv 103 (511)
-++++|++.+ .+.|++.|.+.|.| .++|+++... |++ +-++..+. ..+ +.+. .+.+
T Consensus 168 r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p--~~i--~~el-l~~m 242 (429)
T TIGR00089 168 RPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSHP--DDV--TDDL-IELI 242 (429)
T ss_pred CCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCCh--hhc--CHHH-HHHH
Confidence 4677886554 34688899887532 2567777654 443 44432211 111 1111 1222
Q ss_pred hhhccccCCCceEEEEEeccccccC-------CCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcc
Q 010394 104 GKNVIAYYPETLITAIAVGDEVLTT-------VPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQA 176 (511)
Q Consensus 104 ~~~V~~y~p~~~I~~I~VGNEvl~~-------~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g 176 (511)
++. + ..+.+|.+|=|-... ...+..++..+++.+|++ + ..|.|++.. +. +||
T Consensus 243 ~~~-----~-~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~----~--~~i~i~~~~----Iv-G~P---- 301 (429)
T TIGR00089 243 AEN-----P-KVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAK----I--PDAAITTDI----IV-GFP---- 301 (429)
T ss_pred HhC-----C-CccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHH----C--CCCEEEeeE----EE-ECC----
Confidence 221 1 124456655553321 224556777777777664 2 124444432 21 233
Q ss_pred cccchhhhhhHHHHHHHhhcCCCcccccCCcc
Q 010394 177 FFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYY 208 (511)
Q Consensus 177 ~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf 208 (511)
.+-...+...++|+.+.+ +-.+++|+|-
T Consensus 302 ---gET~ed~~~tl~~i~~~~-~~~~~~~~~s 329 (429)
T TIGR00089 302 ---GETEEDFEETLDLVEEVK-FDKLHSFIYS 329 (429)
T ss_pred ---CCCHHHHHHHHHHHHhcC-CCEeeccccC
Confidence 122245678889988764 4457777764
No 94
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=21.48 E-value=1.4e+02 Score=31.51 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCCh------HHHHHHHhCCCEEEEecCC
Q 010394 43 LSPTDLVSFLQVQKITHIRLYDADP------DLLKALAKTKIRVIVSVPN 86 (511)
Q Consensus 43 ps~~~vv~llk~~~i~~VRlYd~d~------~vL~A~a~tgikV~vGV~n 86 (511)
|+++++.+++.... +.||+|...| ++++.++..||.|.+|=.+
T Consensus 146 ~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 146 PDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred cCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 56777777776543 7889986554 6788889999999888654
No 95
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=21.47 E-value=2.7e+02 Score=29.89 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCcccccc
Q 010394 133 APILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYYVFMQ 212 (511)
Q Consensus 133 ~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~~~ 212 (511)
..++...++++|+. .|++..-..-.-+...+. .-.|+.+.-+-+..+++.|.+.+--++++++|+.....
T Consensus 42 ~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 42 QDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp HHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred HHHHHHHHHHHHHc--------CCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 55666666666653 366665542112222111 11222222345789999999999999999999876422
Q ss_pred CCCCccCccccccCCCCCCceecCCCccccchHHHHHHHHHHHHHHhhCC----CCceEEEeeeccCCCCCCCCCCCCHH
Q 010394 213 NKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNI----TDVMVLVTESGWPSKGDSKEPYATID 288 (511)
Q Consensus 213 ~~~~i~ldyAlF~~~~~~~~~~d~~~~~~Y~Nlfda~vDav~~am~k~g~----~~~~VvVsETGWPS~G~~~~~~as~~ 288 (511)
. +|.. ++.. ++.|+ ++-...+++. ||-.+.- ..-+-.
T Consensus 112 ~------~~~~----------------------~~~~--------~~~~~~v~~~~g~~~~~~~-w~g~~~~--~Dftnp 152 (441)
T PF01055_consen 112 P------DYEN----------------------YDEA--------KEKGYLVKNPDGSPYIGRV-WPGKGGF--IDFTNP 152 (441)
T ss_dssp T------B-HH----------------------HHHH--------HHTT-BEBCTTSSB-EEEE-TTEEEEE--B-TTSH
T ss_pred C------cchh----------------------hhhH--------hhcCceeecccCCcccccc-cCCcccc--cCCCCh
Confidence 1 1111 2221 12222 2225567777 8844321 223445
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEe
Q 010394 289 NADTYNSNLIKHILDRSGTPFHPEVTSNVYIYEL 322 (511)
Q Consensus 289 NA~~y~~~li~~~~~~~GTP~rpg~~~~~yiF~l 322 (511)
.++.++++.++.+.+. .+++.++..+
T Consensus 153 ~a~~w~~~~~~~~~~~--------~Gvdg~w~D~ 178 (441)
T PF01055_consen 153 EARDWWKEQLKELLDD--------YGVDGWWLDF 178 (441)
T ss_dssp HHHHHHHHHHHHHHTT--------ST-SEEEEES
T ss_pred hHHHHHHHHHHHHHhc--------cCCceEEeec
Confidence 5888888888887652 1477887764
No 96
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=21.08 E-value=1.9e+02 Score=31.90 Aligned_cols=46 Identities=11% Similarity=0.103 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCeEEEe-------c-----CCh-------HHHHHHHhCCCEEEEecCCchhh
Q 010394 45 PTDLVSFLQVQKITHIRLY-------D-----ADP-------DLLKALAKTKIRVIVSVPNNQLL 90 (511)
Q Consensus 45 ~~~vv~llk~~~i~~VRlY-------d-----~d~-------~vL~A~a~tgikV~vGV~n~~l~ 90 (511)
-++.+++|++.|++.-|+= - .|+ +++.+|.+.||+-+|.+.--+++
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 4667899999998877653 1 132 78899999999999999865554
No 97
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.89 E-value=9.3e+02 Score=26.60 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=52.5
Q ss_pred CCHHHHHHHHH----hCCCCeEEEecCCh--------HHHHHHHhCC-CEEEEecCCchhhhhcCchHHHHHHHhhhccc
Q 010394 43 LSPTDLVSFLQ----VQKITHIRLYDADP--------DLLKALAKTK-IRVIVSVPNNQLLAIGSSNTTAASWIGKNVIA 109 (511)
Q Consensus 43 ps~~~vv~llk----~~~i~~VRlYd~d~--------~vL~A~a~tg-ikV~vGV~n~~l~~la~~~~~A~~Wv~~~V~~ 109 (511)
-++++|++.++ ..|+..+-+.|-+. ++++++.+.| +++..++... ...+..+.+..+.+-
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r-~~~i~~d~ell~~l~------ 294 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTR-VTDIVRDADILHLYR------ 294 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecc-cccccCCHHHHHHHH------
Confidence 36788876543 46888888887542 5677887776 6665554321 111222222222221
Q ss_pred cCCCceEEEEEeccccccC-------CCCChhhHHHHHHHHHHH
Q 010394 110 YYPETLITAIAVGDEVLTT-------VPSSAPILLPAIESLYSA 146 (511)
Q Consensus 110 y~p~~~I~~I~VGNEvl~~-------~~~~~~~Lvpam~nv~~a 146 (511)
...+..|.+|=|.... ...+..+...+++.+|++
T Consensus 295 ---~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~ 335 (497)
T TIGR02026 295 ---RAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQH 335 (497)
T ss_pred ---HhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 1246788888877643 223455666666666553
No 98
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=20.76 E-value=4e+02 Score=26.26 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhCCCCeEEEecCCh--------HHHHHHH-hCCCEEEEecCCchhhhhcCchHHHHHHHhhhccccCCCc
Q 010394 44 SPTDLVSFLQVQKITHIRLYDADP--------DLLKALA-KTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPET 114 (511)
Q Consensus 44 s~~~vv~llk~~~i~~VRlYd~d~--------~vL~A~a-~tgikV~vGV~n~~l~~la~~~~~A~~Wv~~~V~~y~p~~ 114 (511)
.|.++++.+++.|++.+=+.|.|. ++++.+. ..+++|++|--.. +.+.++.++..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir-------~~edv~~~l~~--------- 99 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIR-------SLENAQEWLKR--------- 99 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcC-------CHHHHHHHHHc---------
Confidence 688899999999999999998863 5676665 4689999887532 23444444433
Q ss_pred eEEEEEeccccccC
Q 010394 115 LITAIAVGDEVLTT 128 (511)
Q Consensus 115 ~I~~I~VGNEvl~~ 128 (511)
-...|++|.|.+.+
T Consensus 100 Ga~~viigt~~~~~ 113 (233)
T cd04723 100 GASRVIVGTETLPS 113 (233)
T ss_pred CCCeEEEcceeccc
Confidence 13457899999765
No 99
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.68 E-value=4e+02 Score=26.71 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCCh---------HHHHHHHhCCCEEEEecCCchhhhhcCchHHHHHHHhhhccccCCC
Q 010394 43 LSPTDLVSFLQVQKITHIRLYDADP---------DLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPE 113 (511)
Q Consensus 43 ps~~~vv~llk~~~i~~VRlYd~d~---------~vL~A~a~tgikV~vGV~n~~l~~la~~~~~A~~Wv~~~V~~y~p~ 113 (511)
..|-++++.+++.|++.+=+.|.|. ++++.++..-+.|.+|=-. .+.+.++.|+...
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGI-------rs~e~~~~~l~~G------- 95 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGI-------RSLDYAEKLRKLG------- 95 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCC-------CCHHHHHHHHHCC-------
Confidence 4788999999999999999999872 6777777543677776432 2345566676542
Q ss_pred ceEEEEEeccccccC
Q 010394 114 TLITAIAVGDEVLTT 128 (511)
Q Consensus 114 ~~I~~I~VGNEvl~~ 128 (511)
+..|+||.+.+.+
T Consensus 96 --a~rvvigT~a~~~ 108 (241)
T PRK14114 96 --YRRQIVSSKVLED 108 (241)
T ss_pred --CCEEEECchhhCC
Confidence 3457899999865
No 100
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=20.32 E-value=9.7e+02 Score=24.82 Aligned_cols=131 Identities=14% Similarity=0.139 Sum_probs=77.0
Q ss_pred CCCCCcccccchhhhhhHHHHHHHhhcCCCcccccCCccccccCCCCccC------------ccccccCCCCCC------
Q 010394 170 PFPPSQAFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPYYVFMQNKGVVPL------------DNSLFKPLTPSK------ 231 (511)
Q Consensus 170 s~pPS~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~i~l------------dyAlF~~~~~~~------ 231 (511)
.+|...+.+.++..+.++.+.|-+.+.++.+++-++-- ........+. ...... |..
T Consensus 63 ~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~---ps~~~~~~~ 137 (336)
T cd02932 63 ITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA--GRKASTAPPWEGGGPLLPPGGGGWQVVA---PSAIPFDEG 137 (336)
T ss_pred CCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCC--CcCCCCCCCccccccccccccCCCceeC---CCCCcCCCC
Confidence 35555567777777889999999999999988886421 1111000000 000000 000
Q ss_pred -ceecCCCccccchHHHHHHHHHHHHHHhhCCCCceEEEeeec------cCCC-CCCCCCCCCHHHHHHHHHHHHHHHHh
Q 010394 232 -EMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVMVLVTESG------WPSK-GDSKEPYATIDNADTYNSNLIKHILD 303 (511)
Q Consensus 232 -~~~d~~~~~~Y~Nlfda~vDav~~am~k~g~~~~~VvVsETG------WPS~-G~~~~~~as~~NA~~y~~~li~~~~~ 303 (511)
.+....+...=..+.+...++...+. +.||.+++|-.+--. .|.. -..++-+.+++|=.+|...+++.+++
T Consensus 138 ~~~p~~mt~~eI~~ii~~~~~aA~~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~ 216 (336)
T cd02932 138 WPTPRELTREEIAEVVDAFVAAARRAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRA 216 (336)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHH
Confidence 00011111112456677777777664 479999999876532 2532 22234578999999999999999987
Q ss_pred cCC
Q 010394 304 RSG 306 (511)
Q Consensus 304 ~~G 306 (511)
..|
T Consensus 217 ~vG 219 (336)
T cd02932 217 VWP 219 (336)
T ss_pred HcC
Confidence 554
No 101
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.31 E-value=4.4e+02 Score=28.76 Aligned_cols=135 Identities=17% Similarity=0.203 Sum_probs=67.9
Q ss_pred CCHHHHHHHH---HhCCCCeEEEecCC---------------hHHHHHHHh-CCC-EEEEecCCchhhhhcCchHHHHHH
Q 010394 43 LSPTDLVSFL---QVQKITHIRLYDAD---------------PDLLKALAK-TKI-RVIVSVPNNQLLAIGSSNTTAASW 102 (511)
Q Consensus 43 ps~~~vv~ll---k~~~i~~VRlYd~d---------------~~vL~A~a~-tgi-kV~vGV~n~~l~~la~~~~~A~~W 102 (511)
-++++|++.+ ...|++.|.++|.| .++|+++.. .|+ ++-++..+ ...+. .+..+.
T Consensus 177 r~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~--p~~i~--~ell~~- 251 (446)
T PRK14337 177 RSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPH--PKDIA--PEVIEA- 251 (446)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCC--cccCC--HHHHHH-
Confidence 3567776544 44689999987643 135565554 344 24333211 11111 121211
Q ss_pred HhhhccccCCCceEEEEEeccccccC-------CCCChhhHHHHHHHHHHHHHhCCCCCeeEEeccccccccccCCCCCc
Q 010394 103 IGKNVIAYYPETLITAIAVGDEVLTT-------VPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSQ 175 (511)
Q Consensus 103 v~~~V~~y~p~~~I~~I~VGNEvl~~-------~~~~~~~Lvpam~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~ 175 (511)
++. . + ....+|.+|=|-... ...+..+...+++.+|++. . .|.+++.. +. +||
T Consensus 252 l~~----~-~-~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~-----~-~i~i~~d~----Iv-G~P--- 311 (446)
T PRK14337 252 FGE----L-P-NLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAAR-----P-DIALTTDL----IV-GFP--- 311 (446)
T ss_pred HHh----C-C-cccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhC-----C-CCeEEEeE----EE-ECC---
Confidence 111 1 1 124566666554321 2245667788888887763 1 25555543 22 244
Q ss_pred ccccchhhhhhHHHHHHHhhcCCCcccccCCc
Q 010394 176 AFFNQSLSSVMLPLLQFLSKTGAPLMMNLYPY 207 (511)
Q Consensus 176 g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPy 207 (511)
| +-...+...++|+.+.+ +-.+++|+|
T Consensus 312 g----ET~ed~~~tl~~l~~~~-~~~~~~f~y 338 (446)
T PRK14337 312 G----ETEEDFEQTLEAMRTVG-FASSFSFCY 338 (446)
T ss_pred C----CCHHHHHHHHHHHHhcC-CCeeEEEec
Confidence 1 22245778889987754 445666655
Done!