Query 010395
Match_columns 511
No_of_seqs 135 out of 156
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h22_A Leucine-rich repeat fli 44.7 78 0.0027 27.2 7.6 82 9-90 6-97 (103)
2 1p16_C Phosphorylated peptide 38.0 22 0.00077 23.3 2.4 10 463-474 15-24 (26)
3 3ci9_A Heat shock factor-bindi 35.9 45 0.0015 24.9 4.2 32 34-65 14-45 (48)
4 3swy_A Cyclic nucleotide-gated 35.4 83 0.0029 23.2 5.5 41 9-59 5-45 (46)
5 3h0g_A DNA-directed RNA polyme 34.6 8.3 0.00028 47.4 0.0 19 10-28 927-945 (1752)
6 3pmr_A Amyloid-like protein 1; 34.3 1.5E+02 0.0052 28.5 8.8 93 4-105 20-117 (219)
7 3fx7_A Putative uncharacterize 33.8 68 0.0023 27.1 5.5 64 4-74 5-75 (94)
8 3swf_A CGMP-gated cation chann 32.6 73 0.0025 25.9 5.2 45 8-62 6-50 (74)
9 3ljm_A Coil Ser L9C; de novo d 32.2 53 0.0018 21.8 3.5 16 49-64 6-21 (31)
10 1m1j_B Fibrinogen beta chain; 31.2 3.4E+02 0.012 28.9 11.6 47 37-83 86-139 (464)
11 3umh_A Amyloid beta A4 protein 27.2 2E+02 0.007 27.5 8.2 93 4-105 13-110 (211)
12 3nmd_A CGMP dependent protein 26.0 39 0.0013 27.3 2.6 13 12-24 26-38 (72)
13 2xus_A Breast cancer metastasi 22.8 1.1E+02 0.0036 23.0 4.2 33 31-63 11-44 (49)
14 1twf_A B220, DNA-directed RNA 22.4 18 0.00063 44.4 0.0 7 162-168 1058-1064(1733)
15 3k1h_A HP1076, putative unchar 21.7 48 0.0016 30.5 2.6 47 126-177 103-153 (158)
16 2z73_A Rhodopsin; visual pigme 21.5 20 0.00067 35.9 0.0 10 167-176 126-135 (448)
17 3mq9_A Bone marrow stromal ant 21.5 1.7E+02 0.0058 30.0 7.1 14 13-26 408-421 (471)
No 1
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.68 E-value=78 Score=27.19 Aligned_cols=82 Identities=13% Similarity=0.218 Sum_probs=50.9
Q ss_pred hhhhhchhH---HHHHHhhhhhh----hhhccchhHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhh---hhHHHHhhhhc
Q 010395 9 ELSELNPLS---FDEFQRQTSLM----TSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQT---KASLDVLKKRE 78 (511)
Q Consensus 9 ~~~e~l~ka---F~eLqs~~s~l----~s~tl~W~eL~~HF~sLe~sL~~r~e~L~~k~~~~e~~~---~~~~~~l~~re 78 (511)
++-|..+|| -+.|+.-++.| -.+...-.|+++.|..+.+.+..+..+++....+.+..+ ......|++|+
T Consensus 6 EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 6 EVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665 46677777765 355677788899999999998888887776665544333 45567888998
Q ss_pred ccccccHHHHHH
Q 010395 79 VTIDGSVEIAME 90 (511)
Q Consensus 79 ~~i~~~~~~~l~ 90 (511)
.=|..++..+|.
T Consensus 86 ~LI~E~~~~~~~ 97 (103)
T 4h22_A 86 EMLEPKLAAALE 97 (103)
T ss_dssp SCC---------
T ss_pred HHHHHHHHHHHH
Confidence 888776655543
No 2
>1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans}
Probab=37.96 E-value=22 Score=23.35 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=4.5
Q ss_pred CCCCCCCCCCCC
Q 010395 463 YGSRSPPYAYSP 474 (511)
Q Consensus 463 y~~~~~~y~y~~ 474 (511)
|+..|+ .|+|
T Consensus 15 YsPtSp--sy~~ 24 (26)
T 1p16_C 15 YSPTSP--SXXX 24 (26)
T ss_pred CCCCCc--cccc
Confidence 444444 4444
No 3
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=35.94 E-value=45 Score=24.86 Aligned_cols=32 Identities=16% Similarity=0.468 Sum_probs=27.0
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 010395 34 LWKELSDHFTSLEQNLQKKSAALRHKIQTLDT 65 (511)
Q Consensus 34 ~W~eL~~HF~sLe~sL~~r~e~L~~k~~~~e~ 65 (511)
.-.++++||..+-..|-.|.++...++.+||.
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 35788999999999999999999888888764
No 4
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=35.44 E-value=83 Score=23.25 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=29.8
Q ss_pred hhhhhchhHHHHHHhhhhhhhhhccchhHHHhhHHHHHHHHHHHHHHHHHH
Q 010395 9 ELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHK 59 (511)
Q Consensus 9 ~~~e~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe~sL~~r~e~L~~k 59 (511)
++.++|.-.++.||. .+..|-..|++-|+-|++|...|+.+
T Consensus 5 ekv~~Le~~ld~LqT----------r~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 5 EKVEQLGSSLDTLQT----------RFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666665544 35667888999999999999988754
No 5
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.56 E-value=8.3 Score=47.41 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=9.8
Q ss_pred hhhhchhHHHHHHhhhhhh
Q 010395 10 LSELNPLSFDEFQRQTSLM 28 (511)
Q Consensus 10 ~~e~l~kaF~eLqs~~s~l 28 (511)
++..|.+-|+.|...+..|
T Consensus 927 ~~~~l~~E~~~l~~dr~~l 945 (1752)
T 3h0g_A 927 VQDLLDEEYTQLVADRELL 945 (1752)
T ss_dssp STHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544
No 6
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=34.34 E-value=1.5e+02 Score=28.54 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=52.7
Q ss_pred CCCCchhhhhchhHHHHHHh-hhhhhhhhccchhHHHhhHHHHHHHH----HHHHHHHHHHHhhhhhhhhhHHHHhhhhc
Q 010395 4 IPDPGELSELNPLSFDEFQR-QTSLMTSCTLLWKELSDHFTSLEQNL----QKKSAALRHKIQTLDTQTKASLDVLKKRE 78 (511)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLqs-~~s~l~s~tl~W~eL~~HF~sLe~sL----~~r~e~L~~k~~~~e~~~~~~~~~l~~re 78 (511)
.|++..--+..++|=..|+. |+.=++-.--.|+|+++++..|.+.- ..||++.- .++|.... .+|.
T Consensus 20 ~~~~~~EH~~f~~Ak~rLe~~hr~k~~~VmkEW~eae~q~k~lpkadkk~m~~rFQ~~v---~aLE~E~~------~Erq 90 (219)
T 3pmr_A 20 MPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSIL---QTLEEQVS------GERQ 90 (219)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHH---HHHHHHHH------HHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH---HHHhhhhH------HHHH
Confidence 56666666667777777764 44445567789999999998876653 44554432 23332221 1111
Q ss_pred ccccccHHHHHHhhhhhHHHHHhhhhc
Q 010395 79 VTIDGSVEIAMEKLEDRTEATLNSISR 105 (511)
Q Consensus 79 ~~i~~~~~~~l~~~~e~~~aa~~s~~~ 105 (511)
.-+..-.+....-|.++|..|+...-.
T Consensus 91 qL~etH~~RV~a~Ln~rrr~Ale~y~~ 117 (219)
T 3pmr_A 91 RLVETHATRVIALINDQRRAALEGFLA 117 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222234456788888887544
No 7
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=33.76 E-value=68 Score=27.11 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=34.9
Q ss_pred CCCCchhhhhchhHHHHHHhhhhhhhhhccchhHHHhhHHHHH-------HHHHHHHHHHHHHHhhhhhhhhhHHHHh
Q 010395 4 IPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLE-------QNLQKKSAALRHKIQTLDTQTKASLDVL 74 (511)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe-------~sL~~r~e~L~~k~~~~e~~~~~~~~~l 74 (511)
|-||.|+ ++.-.+|+.... .+.-.|..|..||.+|. .....-|++|.+..+.|+..+.+-..-|
T Consensus 5 ~~dpeEl----r~Fa~~L~~F~d---~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L 75 (94)
T 3fx7_A 5 QMDTEEV----REFVGHLERFKE---LLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWL 75 (94)
T ss_dssp CCCHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 3455443 344444544433 24556777777777775 2334445666666666666555444444
No 8
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=32.58 E-value=73 Score=25.86 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=33.8
Q ss_pred chhhhhchhHHHHHHhhhhhhhhhccchhHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 010395 8 GELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQT 62 (511)
Q Consensus 8 ~~~~e~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe~sL~~r~e~L~~k~~~ 62 (511)
.++.++|.-.++.||. .+..|-..|++-|+-|++|...|+.+.+.
T Consensus 6 EEKv~~LE~sld~LQT----------rfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 6 EEKVTRMESSVDLLQT----------RFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666666666654 35678889999999999999999877655
No 9
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=32.18 E-value=53 Score=21.85 Aligned_cols=16 Identities=56% Similarity=0.775 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhh
Q 010395 49 LQKKSAALRHKIQTLD 64 (511)
Q Consensus 49 L~~r~e~L~~k~~~~e 64 (511)
|.+++..|++|.+++|
T Consensus 6 lekkcaalesklqale 21 (31)
T 3ljm_A 6 LEKKCAALESKLQALE 21 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666666655
No 10
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.24 E-value=3.4e+02 Score=28.90 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH-------HHhhhhcccccc
Q 010395 37 ELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASL-------DVLKKREVTIDG 83 (511)
Q Consensus 37 eL~~HF~sLe~sL~~r~e~L~~k~~~~e~~~~~~~-------~~l~~re~~i~~ 83 (511)
.|.+||..-|+.+++..++|+.+..+++++|.++. ..+++++..+..
T Consensus 86 ~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~e 139 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKD 139 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccc
Confidence 45899999999999999999999999988887644 334555554443
No 11
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=27.22 E-value=2e+02 Score=27.54 Aligned_cols=93 Identities=12% Similarity=0.167 Sum_probs=47.9
Q ss_pred CCCCchhhhhchhHHHHHHhh-hhhhhhhccchhHHHhhHHHHHHHH----HHHHHHHHHHHhhhhhhhhhHHHHhhhhc
Q 010395 4 IPDPGELSELNPLSFDEFQRQ-TSLMTSCTLLWKELSDHFTSLEQNL----QKKSAALRHKIQTLDTQTKASLDVLKKRE 78 (511)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLqs~-~s~l~s~tl~W~eL~~HF~sLe~sL----~~r~e~L~~k~~~~e~~~~~~~~~l~~re 78 (511)
.|++..--+..++|=..|+.. +.=++-.--.|+|+++++..|.+.= ..+|++.- .++|.... .+|.
T Consensus 13 ~~~~~~EH~~f~~Ak~~Le~~hr~k~~~VmkEW~eae~q~k~l~kadkk~~~~rFQ~~v---~aLE~E~~------~Erq 83 (211)
T 3umh_A 13 TPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKV---ESLEQEAA------NERQ 83 (211)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH---HHHHHHHH------HHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---HHHhhhhH------HHHH
Confidence 455655556677777777643 3334556689999999998886653 44554432 23332221 1111
Q ss_pred ccccccHHHHHHhhhhhHHHHHhhhhc
Q 010395 79 VTIDGSVEIAMEKLEDRTEATLNSISR 105 (511)
Q Consensus 79 ~~i~~~~~~~l~~~~e~~~aa~~s~~~ 105 (511)
.-+..-.+-...-|.++|..|+...-.
T Consensus 84 qL~etH~qRV~a~ln~rrr~Ale~y~~ 110 (211)
T 3umh_A 84 QLVETHMARVEAMLNDRRRLALENYIT 110 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222234456788888887544
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.03 E-value=39 Score=27.30 Aligned_cols=13 Identities=8% Similarity=0.105 Sum_probs=5.3
Q ss_pred hhchhHHHHHHhh
Q 010395 12 ELNPLSFDEFQRQ 24 (511)
Q Consensus 12 e~l~kaF~eLqs~ 24 (511)
+.|++.-.||+.+
T Consensus 26 ~~L~~K~eELr~k 38 (72)
T 3nmd_A 26 YALQEKIEELRQR 38 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 13
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=22.84 E-value=1.1e+02 Score=23.04 Aligned_cols=33 Identities=21% Similarity=0.494 Sum_probs=24.7
Q ss_pred hccchhHHHhhHHHH-HHHHHHHHHHHHHHHhhh
Q 010395 31 CTLLWKELSDHFTSL-EQNLQKKSAALRHKIQTL 63 (511)
Q Consensus 31 ~tl~W~eL~~HF~sL-e~sL~~r~e~L~~k~~~~ 63 (511)
|--.|.+|+..|+.| |+-.+.|...|+.+++++
T Consensus 11 ~ld~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 11 CVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788889999888 556677777777776655
No 14
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=22.35 E-value=18 Score=44.41 Aligned_cols=7 Identities=43% Similarity=0.862 Sum_probs=3.7
Q ss_pred CChhhHH
Q 010395 162 VDPAKFV 168 (511)
Q Consensus 162 pDPAkLV 168 (511)
.+|...|
T Consensus 1058 v~pGe~V 1064 (1733)
T 1twf_A 1058 VHPGEMV 1064 (1733)
T ss_dssp CCTTCCH
T ss_pred CCCCchh
Confidence 5565544
No 15
>3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori}
Probab=21.69 E-value=48 Score=30.51 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=28.5
Q ss_pred HHhhhcchHHHHHHHHhhhchHHHHHhhHHHHhh----cCCChhhHHHHHhhcccC
Q 010395 126 SYCLKMEARGFWKFVVTKKKEIEELRNALPAALS----ECVDPAKFVMEAISEVFP 177 (511)
Q Consensus 126 ~lCe~MD~~gL~~fi~~~~ke~~~lr~Elp~ALr----~ApDPAkLVLdai~~fy~ 177 (511)
.+|++|| ||..||.+.+.|+...-.+|..|+- ..|.+.. +++.+|..
T Consensus 103 ~ll~~~~--~l~aYie~K~~EIk~~Ls~iS~ai~~~~~~tPs~s~---~~~~~f~~ 153 (158)
T 3k1h_A 103 DLLENVG--EFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSN---QSLKDLLS 153 (158)
T ss_dssp GGGGSHH--HHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHhhccc--HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcch---hhHHHhhH
Confidence 4668888 9999999999999988899999987 3455555 56666554
No 16
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=21.51 E-value=20 Score=35.88 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=4.8
Q ss_pred HHHHHhhccc
Q 010395 167 FVMEAISEVF 176 (511)
Q Consensus 167 LVLdai~~fy 176 (511)
+++=++++|+
T Consensus 126 l~~isidRy~ 135 (448)
T 2z73_A 126 MAMISIDRYN 135 (448)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444555544
No 17
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.47 E-value=1.7e+02 Score=30.00 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=6.9
Q ss_pred hchhHHHHHHhhhh
Q 010395 13 LNPLSFDEFQRQTS 26 (511)
Q Consensus 13 ~l~kaF~eLqs~~s 26 (511)
++||-|.+++.|-+
T Consensus 408 ~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 408 EAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhh
Confidence 34555555555543
Done!