Query 010395
Match_columns 511
No_of_seqs 135 out of 156
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 05:53:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010395.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010395hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gtsa1 a.25.5.1 (A:4-80) Hypo 74.2 1.9 0.00014 32.3 4.6 64 11-77 5-75 (77)
2 d1rw6a_ a.47.4.1 (A:) CAPPD, a 21.8 2.4E+02 0.017 24.4 10.8 54 4-57 8-66 (192)
3 d1eo0a_ a.48.3.1 (A:) Transcri 12.6 61 0.0044 24.3 2.8 19 217-235 58-76 (77)
4 d1vz0a1 a.4.14.1 (A:116-208) P 12.4 1.2E+02 0.0089 23.0 4.7 54 244-304 3-57 (93)
5 d1z0jb1 a.2.19.1 (B:734-784) F 11.4 86 0.0063 21.4 3.0 37 304-340 8-45 (51)
6 d1d5ya1 a.4.1.8 (A:3-56) Rob t 10.7 75 0.0055 21.2 2.6 28 360-388 2-29 (54)
7 d1wjta_ a.48.3.1 (A:) Transcri 9.6 1E+02 0.0075 24.0 3.3 57 167-238 32-89 (103)
8 d1hcia4 a.7.1.1 (A:633-746) al 9.2 44 0.0032 25.5 0.9 24 34-57 38-61 (114)
9 d1u61a_ a.149.1.1 (A:) Hypothe 9.0 44 0.0032 27.0 0.8 51 247-297 11-65 (127)
10 d1sfua_ a.4.5.19 (A:) 34L {Yab 8.5 1E+02 0.0074 22.8 2.7 30 265-294 3-38 (70)
No 1
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=74.15 E-value=1.9 Score=32.30 Aligned_cols=64 Identities=23% Similarity=0.307 Sum_probs=40.2
Q ss_pred hhhchhHHHHHHhhhhhhhhhccchhHHHhhHHHHHH---HHHHHH----HHHHHHHhhhhhhhhhHHHHhhhh
Q 010395 11 SELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQ---NLQKKS----AALRHKIQTLDTQTKASLDVLKKR 77 (511)
Q Consensus 11 ~e~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe~---sL~~r~----e~L~~k~~~~e~~~~~~~~~l~~r 77 (511)
+|.++.....|++.+.+| +..-.-|..||+.|+. .-..|| +-|++...+|+.-+.+.+.-|++|
T Consensus 5 teevr~fv~hlerfkell---ndevngls~hf~nl~swqd~~rd~fsevldnlk~tfnefdea~qeqiawlker 75 (77)
T d2gtsa1 5 TEEVREFVGHLERFKELL---REEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKER 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhHHHhhcchHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888874 4455567788877753 223333 334555566666666666666554
No 2
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.78 E-value=2.4e+02 Score=24.41 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=38.2
Q ss_pred CCCCchhhhhchhHHHHHH-hhhhhhhhhccchhHHHhhHHHHH----HHHHHHHHHHH
Q 010395 4 IPDPGELSELNPLSFDEFQ-RQTSLMTSCTLLWKELSDHFTSLE----QNLQKKSAALR 57 (511)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLq-s~~s~l~s~tl~W~eL~~HF~sLe----~sL~~r~e~L~ 57 (511)
.||++.=-+..++|=..|+ .|+.=++-.--.|++++++...|- +++..||+..-
T Consensus 8 ~~~~~~Eh~~f~~Ak~rLee~hr~k~~~VmkeW~eaE~~~~~l~k~d~K~~~~rFq~~v 66 (192)
T d1rw6a_ 8 TPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKV 66 (192)
T ss_dssp TTSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 5777777777777777775 455555666789999999887764 45666666554
No 3
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.55 E-value=61 Score=24.32 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 010395 217 TPSVKEKAKEIAERWKASL 235 (511)
Q Consensus 217 s~~vkeeAk~lA~~WK~kl 235 (511)
+++|...|+.|...||..+
T Consensus 58 ~~~v~~lAk~Lv~~WK~~V 76 (77)
T d1eo0a_ 58 NVEISKLVKKMISSWKDAI 76 (77)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999876
No 4
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=12.44 E-value=1.2e+02 Score=22.99 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=37.4
Q ss_pred CCch-hHHHHHHHHHHhcCCcccCHHHHHHHhccccchhhhHHHHHHhCCCCchhhhhhcCc
Q 010395 244 VKTP-DVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPELISRGQ 304 (511)
Q Consensus 244 ~~~l-ea~gFLqlLa~fGI~seFd~del~~Lv~~va~rkq~~eL~~sLGL~dKmp~LI~kGk 304 (511)
.+++ +|.||-.|+ -|| ++.++|.+.|.. + |..-....+-|.|.+.|..+|..|+
T Consensus 3 L~piEeA~a~~~L~-e~g----~t~~~iA~~~Gk-s-~~~V~~~LrLl~L~~~v~~~l~~g~ 57 (93)
T d1vz0a1 3 LSPVEEARGYQALL-EMG----LTQEEVARRVGK-A-RSTVANALRLLQLPPEALEALERGE 57 (93)
T ss_dssp CCHHHHHHHHHHHH-HTT----CCHHHHHHHHTC-C-HHHHHHHHHGGGSCHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHH-HcC----CCHHHHHHHHcc-c-hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455 489999998 588 488888877642 1 1222334566888888888888886
No 5
>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.41 E-value=86 Score=21.43 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=24.9
Q ss_pred cchHHHH-HHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Q 010395 304 QQLDAVH-FTYEVGLVDKFPPVPLLKAFLKDAKKAAVS 340 (511)
Q Consensus 304 k~IeAV~-fi~aF~L~dkFpPvpLLK~yl~~akk~~~~ 340 (511)
||||-|+ +||...+..+.--|.+|..-|++.|.+..+
T Consensus 8 qqidnikayifdak~~gr~deve~ltenl~elk~tl~k 45 (51)
T d1z0jb1 8 QQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAK 45 (51)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 4666664 456666666677777887777777776654
No 6
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.66 E-value=75 Score=21.18 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q 010395 360 QSALRAVIKCIEDYKLQGEFPPENLKKRL 388 (511)
Q Consensus 360 l~aLksViKcIEdhkLese~p~~~L~krI 388 (511)
.+.+..|+..|++| ++..+++++|.+..
T Consensus 2 ~~ii~~i~~yi~~~-~~~~itl~~lA~~~ 29 (54)
T d1d5ya1 2 AGIIRDLLIWLEGH-LDQPLSLDNVAAKA 29 (54)
T ss_dssp HHHHHHHHHHHHTT-SSSSCCCHHHHTTT
T ss_pred HHHHHHHHHHHHHc-cCCCCCHHHHHHHH
Confidence 35678899999999 77789888887643
No 7
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.57 E-value=1e+02 Score=23.96 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHhhcccCCCCCCCCCCchhhHH-HHHHHHHhccccCCccccccCCCCChhHHHHHHHHHHHHHHHhhhc
Q 010395 167 FVMEAISEVFPVDKRSDKSGNDLGWA-CVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEER 238 (511)
Q Consensus 167 LVLdai~~fy~~~~~~~~~~~~~~~a-CilLLE~L~~~l~~p~~g~~~p~vs~~vkeeAk~lA~~WK~kl~~~ 238 (511)
.||++|..+-...- ....+..+ +...+-.|..- ...++|+..|+.|-..||..+...
T Consensus 32 ~vl~~L~~L~~~~i----t~e~L~~T~IGk~Vn~LrK~-----------~~~~~v~~lAk~Lv~~WK~~v~~~ 89 (103)
T d1wjta_ 32 GALDLLKKLNSCQM----SIQLLQTTRIGVAVNGVRKH-----------CSDKEVVSLAKVLIKNWKRLLDSP 89 (103)
T ss_dssp SHHHHHHHHHTSCC----CHHHHHHTCHHHHHHHHHHH-----------CCCSHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCCC----CHHHHHhCCccHhHHHHHcc-----------CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 36777766542111 11233333 55666666431 123589999999999999998754
No 8
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.15 E-value=44 Score=25.51 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=13.4
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHH
Q 010395 34 LWKELSDHFTSLEQNLQKKSAALR 57 (511)
Q Consensus 34 ~W~eL~~HF~sLe~sL~~r~e~L~ 57 (511)
....+-.++..|+..|......++
T Consensus 38 ~ve~~l~~h~~~e~el~~~~~~i~ 61 (114)
T d1hcia4 38 ALEDQMNQLKQYEHNIINYKNNID 61 (114)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666655544443
No 9
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=9.04 E-value=44 Score=26.98 Aligned_cols=51 Identities=10% Similarity=0.038 Sum_probs=36.8
Q ss_pred hhHHH--HHHHHHHhcCCcc--cCHHHHHHHhccccchhhhHHHHHHhCCCCchh
Q 010395 247 PDVHT--FLQLLVTFGIVKK--EDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297 (511)
Q Consensus 247 lea~g--FLqlLa~fGI~se--Fd~del~~Lv~~va~rkq~~eL~~sLGL~dKmp 297 (511)
||-+| .|.|+++.=|... .++.++-++...+...+...++++.+||.+-+.
T Consensus 11 LefLGDAVl~l~v~~~L~~~~p~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~ 65 (127)
T d1u61a_ 11 LAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 65 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHccHHHHHHHHHHhCcHHHhh
Confidence 44444 6677777666544 467888888877777777888999999876654
No 10
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=8.51 E-value=1e+02 Score=22.84 Aligned_cols=30 Identities=13% Similarity=-0.031 Sum_probs=17.0
Q ss_pred cCHHHHHHHhc------cccchhhhHHHHHHhCCCC
Q 010395 265 EDVDLYRKLVV------GSAWRKQMPKLAVSLGLGD 294 (511)
Q Consensus 265 Fd~del~~Lv~------~va~rkq~~eL~~sLGL~d 294 (511)
|+..||.+||- .....-.|..|++.||+..
T Consensus 3 ~~~~~i~~lvk~~l~~L~~~~~~tA~~LAk~Lg~~K 38 (70)
T d1sfua_ 3 VNDAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINK 38 (70)
T ss_dssp CCSHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCchHHHHHHHhCCCH
Confidence 55556666552 2223334677888888753
Done!