BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010396
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 250 SRKIPRSVRSIKEACRFYMI-----ESGFALAVAFLINV--SVISVSGAVCSSSNI-NPE 301
R+IP + SIK CRF + ++G V F NV + IS++G V + P
Sbjct: 4 EREIP-AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKP- 61
Query: 302 DQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFL 357
AS + + A ++ +VL ++ +FA +SG++ T+ G G V QG +
Sbjct: 62 -NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVI-GDSVKQGII 115
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 19 RSFSNAPLIKNEDADQIVVPDKTSW--KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQY 76
R N + KN+ D I++ K W KN I F SI DP N L+SG +
Sbjct: 48 RPRLNEIIAKNKSIDDILIK-KNDWYEKNNIKVITSEFATSI---DPNNKLVTLKSGEKI 103
Query: 77 KYELLWI 83
KYE L I
Sbjct: 104 KYEKLII 110
>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
Length = 1231
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 407 GSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLA---GVAYLVLRKNK 463
G L+MI N+Y ++ + +FH + + L IFG +Y A G A L +
Sbjct: 88 GLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFG-DHQDIYAARQTGFAMLASSSVQ 146
Query: 464 EASHLLALTTH 474
EA H +AL H
Sbjct: 147 EA-HDMALVAH 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,677,550
Number of Sequences: 62578
Number of extensions: 518913
Number of successful extensions: 1346
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 8
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)