Query 010396
Match_columns 511
No_of_seqs 322 out of 1595
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 00:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 5E-106 1E-110 834.4 21.9 425 37-468 19-485 (503)
2 PRK00701 manganese transport p 100.0 3.6E-78 7.7E-83 644.5 46.9 374 17-398 4-380 (439)
3 TIGR01197 nramp NRAMP (natural 100.0 5.9E-77 1.3E-81 625.7 41.3 349 44-398 1-366 (390)
4 COG1914 MntH Mn2+ and Fe2+ tra 100.0 8.9E-74 1.9E-78 602.7 43.8 380 39-432 9-389 (416)
5 PF01566 Nramp: Natural resist 100.0 5E-61 1.1E-65 500.5 36.7 344 66-419 1-346 (358)
6 TIGR02119 panF sodium/pantothe 98.8 0.0002 4.3E-09 77.9 41.4 117 55-174 50-175 (471)
7 TIGR00813 sss transporter, SSS 98.7 9E-05 1.9E-09 78.9 34.8 118 54-174 12-134 (407)
8 PRK09442 panF sodium/panthothe 98.7 0.00072 1.6E-08 73.8 41.2 114 57-173 53-175 (483)
9 PF00474 SSF: Sodium:solute sy 98.7 2.8E-05 6.2E-10 82.5 29.6 112 56-167 17-131 (406)
10 PRK09395 actP acetate permease 98.6 0.001 2.2E-08 74.1 40.6 121 53-174 77-200 (551)
11 PF03222 Trp_Tyr_perm: Tryptop 98.6 0.00036 7.9E-09 74.5 35.3 158 48-208 4-169 (394)
12 PRK12488 acetate permease; Pro 98.6 0.0012 2.6E-08 73.5 40.7 121 53-174 75-198 (549)
13 TIGR02121 Na_Pro_sym sodium/pr 98.6 0.00057 1.2E-08 74.8 37.5 117 57-174 48-174 (487)
14 TIGR02711 symport_actP cation/ 98.6 0.00061 1.3E-08 75.8 37.4 121 53-174 75-198 (549)
15 PRK15419 proline:sodium sympor 98.5 0.00055 1.2E-08 75.2 35.7 121 54-174 49-178 (502)
16 TIGR03648 Na_symport_lg probab 98.3 0.012 2.5E-07 65.7 41.1 119 53-174 40-163 (552)
17 PRK15132 tyrosine transporter 98.2 0.0027 5.8E-08 68.2 31.3 156 48-208 4-169 (403)
18 COG0591 PutP Na+/proline sympo 98.2 0.0087 1.9E-07 65.8 35.1 113 61-173 54-172 (493)
19 COG1457 CodB Purine-cytosine p 98.1 0.0091 2E-07 64.6 32.4 119 79-200 53-171 (442)
20 PF01235 Na_Ala_symp: Sodium:a 98.1 0.0062 1.3E-07 65.5 30.5 269 58-357 30-338 (416)
21 PRK11375 allantoin permease; P 98.1 0.035 7.6E-07 61.0 39.2 48 78-125 60-107 (484)
22 PRK10484 putative transporter; 98.0 0.049 1.1E-06 60.3 37.0 111 53-163 46-164 (523)
23 TIGR00800 ncs1 NCS1 nucleoside 98.0 0.027 5.9E-07 60.9 32.9 75 60-135 27-104 (442)
24 PRK13629 threonine/serine tran 97.9 0.049 1.1E-06 59.1 37.7 151 54-209 26-188 (443)
25 TIGR00814 stp serine transport 97.9 0.03 6.5E-07 60.0 32.1 125 81-207 33-170 (397)
26 PRK09664 tryptophan permease T 97.9 0.03 6.5E-07 60.4 30.8 314 48-385 10-341 (415)
27 TIGR00837 araaP aromatic amino 97.9 0.014 3.1E-07 61.3 27.8 72 313-385 254-326 (381)
28 COG4147 DhlC Predicted symport 97.9 0.021 4.5E-07 61.9 28.8 280 96-391 93-413 (529)
29 PRK10483 tryptophan permease; 97.8 0.072 1.6E-06 57.5 32.5 151 47-202 11-170 (414)
30 PRK10249 phenylalanine transpo 97.8 0.095 2.1E-06 56.9 36.0 105 49-158 30-137 (458)
31 PRK11017 codB cytosine permeas 97.7 0.11 2.4E-06 55.7 37.2 109 79-188 43-152 (404)
32 PF02133 Transp_cyt_pur: Perme 97.7 0.017 3.6E-07 62.2 25.5 78 57-135 19-99 (440)
33 COG0733 Na+-dependent transpor 97.6 0.14 3.1E-06 55.4 36.5 267 53-344 13-322 (439)
34 PRK11387 S-methylmethionine tr 97.6 0.15 3.2E-06 55.5 41.4 40 314-353 277-316 (471)
35 COG3949 Uncharacterized membra 97.5 0.061 1.3E-06 56.0 25.0 141 42-189 5-146 (349)
36 TIGR02358 thia_cytX probable h 97.3 0.34 7.4E-06 51.7 32.6 117 78-198 29-151 (386)
37 PRK11021 putative transporter; 97.1 0.55 1.2E-05 50.0 39.9 40 314-353 248-287 (410)
38 PRK15049 L-asparagine permease 96.9 0.97 2.1E-05 49.8 43.7 39 315-353 292-330 (499)
39 PRK11357 frlA putative fructos 96.8 1 2.2E-05 48.6 33.3 38 85-124 54-91 (445)
40 TIGR00905 2A0302 transporter, 96.8 1.1 2.3E-05 48.9 36.3 39 315-353 271-309 (473)
41 TIGR00909 2A0306 amino acid tr 96.7 1.1 2.4E-05 47.8 31.2 42 315-356 267-308 (429)
42 TIGR00835 agcS amino acid carr 96.7 1.2 2.7E-05 48.3 31.7 282 57-360 57-368 (425)
43 TIGR00930 2a30 K-Cl cotranspor 96.6 2.6 5.6E-05 50.4 37.0 29 326-354 386-414 (953)
44 PRK11049 D-alanine/D-serine/gl 96.6 1.5 3.3E-05 47.7 40.4 38 316-353 284-321 (469)
45 PRK10238 aromatic amino acid t 96.5 1.6 3.5E-05 47.3 42.3 133 49-186 21-156 (456)
46 PRK10644 arginine:agmatin anti 96.4 1.8 3.8E-05 46.7 40.5 37 85-123 51-87 (445)
47 TIGR00910 2A0307_GadC glutamat 96.4 2.1 4.6E-05 47.3 36.2 50 74-124 29-83 (507)
48 TIGR00796 livcs branched-chain 96.0 2.8 6E-05 44.9 34.7 72 53-125 1-72 (378)
49 TIGR03810 arg_ornith_anti argi 96.0 3.1 6.6E-05 45.3 38.6 40 314-353 266-305 (468)
50 TIGR01773 GABAperm gamma-amino 95.9 3.1 6.8E-05 44.8 40.2 73 49-125 21-94 (452)
51 COG0814 SdaC Amino acid permea 95.9 3.4 7.3E-05 44.7 33.4 157 50-209 12-178 (415)
52 TIGR00908 2A0305 ethanolamine 95.7 3.7 8.1E-05 44.1 39.6 38 86-125 52-89 (442)
53 PF05525 Branch_AA_trans: Bran 95.7 4.1 8.9E-05 44.3 32.0 278 53-355 9-305 (427)
54 COG4145 PanF Na+/panthothenate 95.6 4.1 8.9E-05 43.5 30.5 118 54-176 48-176 (473)
55 PRK10435 cadB lysine/cadaverin 95.0 6.2 0.00013 42.5 40.4 69 50-124 15-84 (435)
56 TIGR00913 2A0310 amino acid pe 95.0 6.5 0.00014 42.7 39.6 73 50-125 12-86 (478)
57 PF13520 AA_permease_2: Amino 94.3 8.5 0.00018 40.8 35.9 40 315-354 261-300 (426)
58 COG0833 LysP Amino acid transp 93.9 13 0.00029 41.4 30.5 276 50-354 60-353 (541)
59 PRK10197 gamma-aminobutyrate t 93.8 12 0.00025 40.6 39.2 38 317-354 256-293 (446)
60 COG1113 AnsP Gamma-aminobutyra 93.1 16 0.00034 40.1 30.5 122 60-185 28-156 (462)
61 PRK10655 potE putrescine trans 93.1 14 0.00031 39.5 38.9 40 314-353 260-299 (438)
62 PRK10746 putative transport pr 93.0 16 0.00035 39.8 40.2 41 315-355 272-312 (461)
63 TIGR00911 2A0308 L-type amino 92.8 18 0.00039 39.7 35.1 37 86-124 89-125 (501)
64 PF02554 CstA: Carbon starvati 92.6 5.9 0.00013 42.2 16.4 58 66-125 71-132 (376)
65 PRK10580 proY putative proline 92.5 18 0.00039 39.1 41.4 73 49-125 18-91 (457)
66 PF00324 AA_permease: Amino ac 92.4 1.6 3.4E-05 47.5 12.6 38 316-353 278-315 (478)
67 TIGR00907 2A0304 amino acid pe 91.6 23 0.0005 38.5 29.0 40 314-353 291-331 (482)
68 TIGR00906 2A0303 cationic amin 90.6 33 0.00072 38.5 33.0 38 316-353 303-340 (557)
69 COG1953 FUI1 Cytosine/uracil/t 89.5 39 0.00084 37.5 25.5 119 79-198 75-213 (497)
70 PRK10836 lysine transporter; P 87.2 50 0.0011 36.1 39.9 38 316-353 286-323 (489)
71 KOG1286 Amino acid transporter 82.5 93 0.002 35.2 23.1 33 324-356 315-350 (554)
72 PF00209 SNF: Sodium:neurotran 80.9 77 0.0017 35.2 17.2 34 323-356 344-378 (523)
73 KOG1289 Amino acid transporter 80.2 1.1E+02 0.0024 34.5 20.8 45 313-357 326-375 (550)
74 TIGR03813 put_Glu_GABA_T putat 79.4 1E+02 0.0022 33.6 35.0 65 54-124 10-79 (474)
75 COG1115 AlsT Na+/alanine sympo 76.9 1.2E+02 0.0027 33.3 35.0 269 58-360 74-385 (452)
76 PRK15433 branched-chain amino 74.8 1.4E+02 0.003 32.9 33.5 77 52-129 13-89 (439)
77 KOG2349 Na+:iodide/myo-inosito 74.8 1.2E+02 0.0025 34.6 16.2 104 58-165 58-166 (585)
78 TIGR03428 ureacarb_perm permea 73.1 1.5E+02 0.0032 32.3 35.7 44 79-124 52-95 (475)
79 COG0531 PotE Amino acid transp 72.6 1.4E+02 0.0029 31.8 35.7 40 314-353 274-313 (466)
80 PRK15015 carbon starvation pro 71.6 64 0.0014 37.2 13.1 52 73-125 108-163 (701)
81 PRK09509 fieF ferrous iron eff 67.3 1.5E+02 0.0033 30.3 17.3 89 176-274 73-161 (299)
82 COG1966 CstA Carbon starvation 66.7 2.3E+02 0.005 32.1 35.1 54 71-125 75-132 (575)
83 PF03845 Spore_permease: Spore 65.2 1.7E+02 0.0036 30.0 31.8 121 82-209 36-165 (320)
84 PRK09928 choline transport pro 59.1 3.4E+02 0.0075 31.6 22.9 57 329-386 410-472 (679)
85 TIGR01297 CDF cation diffusion 46.9 3E+02 0.0065 27.2 13.8 18 176-193 52-69 (268)
86 COG0053 MMT1 Predicted Co/Zn/C 45.5 2.5E+02 0.0055 29.1 11.5 64 175-244 74-137 (304)
87 PRK15238 inner membrane transp 42.2 4.9E+02 0.011 28.4 36.7 68 53-124 15-87 (496)
88 TIGR00912 2A0309 spore germina 38.2 4.7E+02 0.01 27.0 35.4 133 50-195 11-151 (359)
89 PRK15433 branched-chain amino 34.8 6.6E+02 0.014 27.7 13.2 67 110-179 268-334 (439)
90 PRK03557 zinc transporter ZitB 34.6 5.3E+02 0.012 26.6 18.7 19 176-194 81-99 (312)
91 COG4721 ABC-type cobalt transp 30.2 5.1E+02 0.011 25.0 10.5 84 119-203 48-141 (192)
92 PF12811 BaxI_1: Bax inhibitor 30.0 6.3E+02 0.014 26.0 16.4 55 219-280 204-258 (274)
93 PF14362 DUF4407: Domain of un 27.2 5.1E+02 0.011 26.4 10.2 36 141-176 30-65 (301)
94 PF01545 Cation_efflux: Cation 27.0 2.6E+02 0.0055 27.9 7.9 19 176-194 61-79 (284)
95 PRK00968 tetrahydromethanopter 26.8 89 0.0019 31.0 4.2 42 326-370 180-221 (240)
96 PF05525 Branch_AA_trans: Bran 26.3 8.9E+02 0.019 26.6 14.2 74 109-188 263-337 (427)
97 COG0659 SUL1 Sulfate permease 23.5 1.1E+03 0.024 26.7 13.1 92 44-145 52-154 (554)
98 PF13124 DUF3963: Protein of u 22.5 1E+02 0.0022 22.0 2.7 24 360-384 15-38 (40)
99 COG3610 Uncharacterized conser 22.1 6.7E+02 0.014 23.6 9.5 75 145-223 17-98 (156)
100 PRK04125 murein hydrolase regu 21.7 6.5E+02 0.014 23.3 9.7 49 150-199 28-76 (141)
101 PF05915 DUF872: Eukaryotic pr 21.7 4.4E+02 0.0095 23.5 7.3 31 436-467 79-109 (115)
102 PF06738 DUF1212: Protein of u 21.7 6.8E+02 0.015 23.5 11.0 9 147-155 116-124 (193)
103 COG3949 Uncharacterized membra 21.2 1E+03 0.022 25.4 12.2 53 316-370 70-122 (349)
104 PF01914 MarC: MarC family int 20.1 2.7E+02 0.0057 27.2 6.2 52 61-112 122-178 (203)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-106 Score=834.43 Aligned_cols=425 Identities=51% Similarity=0.809 Sum_probs=385.4
Q ss_pred cCCcchHHHHHHhhhHHHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhh
Q 010396 37 VPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNE 116 (511)
Q Consensus 37 ~~~~~~~~~~l~~lGPG~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~ 116 (511)
.+++++|||+|+|+|||||||+||+||||++||+|+||++||+|||++++++++++++|++|+|+|+||||||+|.||++
T Consensus 19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~ 98 (503)
T KOG1291|consen 19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE 98 (503)
T ss_pred CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 010396 117 YPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCF 196 (511)
Q Consensus 117 y~~~~~~~lwl~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F 196 (511)
|||+.++.+|+++|+|++++|++||+|+|+|+|+|+++|+|+||+||++||+++++++|||.||+|.++.+|+.+|++||
T Consensus 99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai~F 178 (503)
T KOG1291|consen 99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAISF 178 (503)
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHhhccccccccCC--CChHHHHHHHhccchhhHHHHHHHhHhhhccCCcch-hhHHHHHHHHHHHHHH
Q 010396 197 FAELGYAKPEAKEVLHGLFVPQLKG--NGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSV-RSIKEACRFYMIESGF 273 (511)
Q Consensus 197 ~~~~~~~~P~~~~v~~G~~vP~~~~--~~~~~~avaiiGatimPh~lflhSslv~~r~~~~~~-~~~~~a~~~~~id~~~ 273 (511)
.+|+..++|+.+|++.|.|+|++.+ ++.+++++|++||+|||||+|+||++||+|+.|++. ++.+|+++|+.+|+.+
T Consensus 179 ~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies~i 258 (503)
T KOG1291|consen 179 GVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIESAI 258 (503)
T ss_pred heeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHHHH
Confidence 9999999999999999999999986 356899999999999999999999999999999865 4688999999999999
Q ss_pred HHHHHHHHHHHHHHHH-hhhhccCCC-CCC-----CcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhh
Q 010396 274 ALAVAFLINVSVISVS-GAVCSSSNI-NPE-----DQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGT 346 (511)
Q Consensus 274 al~va~lIn~ailiva-A~v~~~~g~-~~~-----~~~~~~~~~l~~a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt 346 (511)
++.++|.||.+++.++ |..++++.. ... +.+...+.|+.+++.+|++.+|+++.++|++|+++||||||+|||
T Consensus 259 al~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~~a~~Ifai~lLasGQSstitgT 338 (503)
T KOG1291|consen 259 ALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGPAALYIFAIGLLASGQSSTITGT 338 (503)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhccHHHHHHHHHHHHCCCcccceee
Confidence 9999999999999998 766665432 111 122344678999999999999999999999999999999999999
Q ss_pred hhhHHHhhhccCCCccchhhHHHHHHHHHHHHHHHHHHhCcchhHhHHHHHH----------------------------
Q 010396 347 YAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIAS---------------------------- 398 (511)
Q Consensus 347 ~agq~vm~Gfl~~~~~~~~r~litr~iaiiP~liv~~~~g~~~~~~LLi~sq---------------------------- 398 (511)
|+||++||||+|+|++||.||++||++||+|+++++++.|.++..++++++|
T Consensus 339 yaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~IM~~~~ 418 (503)
T KOG1291|consen 339 YAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKIMGVFK 418 (503)
T ss_pred eeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHHhhhhc
Confidence 9999999999999999999999999999999999999999989999998876
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 010396 399 ----ITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHL 468 (511)
Q Consensus 399 ----~~~~~~~~a~~ii~lN~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yl~~~~~~~~~~~ 468 (511)
.+..+|.+..+++.+|.|++++ +.....+++.. +...+....+.|+++++||..++-......
T Consensus 419 ~~~~~~~~~~~~~~~~~~in~y~~v~-~~~~~~~~~~~------~~~~~~~~~~~y~~~i~yL~~~~l~~~~~~ 485 (503)
T KOG1291|consen 419 NGLVTEELTWTVAALVLGINGYFLVS-FFWSLVGKHSK------IVVTVNVWTLAYLAFILYLAATCLNAYSII 485 (503)
T ss_pred cCccceeeeehheeeeeeeeeEEeee-ehhhhcCCcee------eehhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6678999999999999999985 44444443322 122345567889999999999875544433
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=3.6e-78 Score=644.53 Aligned_cols=374 Identities=43% Similarity=0.753 Sum_probs=344.9
Q ss_pred CCCCCCCCccccCCCCcccccCCcchHHHHHHhhhHHHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010396 17 GNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQS 96 (511)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGPG~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~ 96 (511)
-+|++.++|.+++.+.+....+++..+|++++++|||++++++|+||||++|++|+||+|||+|+|++++++++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~ 83 (439)
T PRK00701 4 LPRTATAPFSLSEVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQS 83 (439)
T ss_pred CcccccCCCChhhhcccccCCCcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 37889999999988665444445677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhc
Q 010396 97 LAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQY 176 (511)
Q Consensus 97 laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~y 176 (511)
+++|+|++|||+++|.|||||||++++++|+.++++++++|++|++|+|+|+|+++|+|.+++++++++++++++++.+.
T Consensus 84 ~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~~ 163 (439)
T PRK00701 84 LSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRR 163 (439)
T ss_pred HHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888777788
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccc---cCCCChHHHHHHHhccchhhHHHHHHHhHhhhccC
Q 010396 177 GVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQ---LKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKI 253 (511)
Q Consensus 177 g~r~lE~v~~~Lv~im~l~F~~~~~~~~P~~~~v~~G~~vP~---~~~~~~~~~avaiiGatimPh~lflhSslv~~r~~ 253 (511)
+||++|+++..++.+|.+||+++++.++|||+|+++| ++|+ +|+++.+..++|++|+|+||||+|+||+++++|..
T Consensus 164 ~y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~ 242 (439)
T PRK00701 164 GFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVV 242 (439)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999 8999 88656678899999999999999999999988865
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHH
Q 010396 254 PRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIA 333 (511)
Q Consensus 254 ~~~~~~~~~a~~~~~id~~~al~va~lIn~ailivaA~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~A~~lFaig 333 (511)
+++++..++.+|+.++|+.+++.+++++|.++++++|+++|++|... ..+..|++++|+|.+|++|+++|++|
T Consensus 243 ~~~~~~~~~~l~~~r~Dt~~g~~i~~li~~ai~v~~A~~l~~~g~~~-------~~~~~~~a~~L~p~~G~~a~~lFaiG 315 (439)
T PRK00701 243 GRTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTD-------VADIEDAYLLLSPLLGAAAATLFGIA 315 (439)
T ss_pred cCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------cCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 54555567789999999999999999999999999999999877531 13678999999999999999999999
Q ss_pred HHHhhhhcchhhhhhhHHHhhhccCCCccchhhHHHHHHHHHHHHHHHHHHhCcchhHhHHHHHH
Q 010396 334 LLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIAS 398 (511)
Q Consensus 334 LlaAg~SStitgt~agq~vm~Gfl~~~~~~~~r~litr~iaiiP~liv~~~~g~~~~~~LLi~sq 398 (511)
+++|||+|+++++++||+++|||+++|.++|.||.++|+++++|++++.++++..+|.++++++|
T Consensus 316 L~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aq 380 (439)
T PRK00701 316 LLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQ 380 (439)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888765456899999987
No 3
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=5.9e-77 Score=625.73 Aligned_cols=349 Identities=49% Similarity=0.802 Sum_probs=317.6
Q ss_pred HHHHHhhhHHHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHH
Q 010396 44 KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (511)
Q Consensus 44 ~~~l~~lGPG~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 123 (511)
||+++++|||++++++|+||||++|++|+||+|||+|+|++++++++++++|++++|+|++|||+++|.|||+|||+.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 010396 124 ILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA 203 (511)
Q Consensus 124 ~lwl~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~~~~~ 203 (511)
.+|++++++++++|++|++|+|+|+|++||+|.|+++++++++++.++++.+++||++||++..++.+|.+||+++++.+
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~~~~~~ 160 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYA 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999999988888887778888999999999999999999999999999
Q ss_pred CCCHHHhhccccccccCC--CChHHHHHHHhccchhhHHHHHHHhHhhhccCCcchh-hHHHHHH-------------HH
Q 010396 204 KPEAKEVLHGLFVPQLKG--NGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVR-SIKEACR-------------FY 267 (511)
Q Consensus 204 ~P~~~~v~~G~~vP~~~~--~~~~~~avaiiGatimPh~lflhSslv~~r~~~~~~~-~~~~a~~-------------~~ 267 (511)
+|||+++++|.++|++|. ++++..++|++|+|+||||+|+||+++|+|+++++++ ++|+++| +.
T Consensus 161 ~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (390)
T TIGR01197 161 KPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVSFS 240 (390)
T ss_pred CCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhchhHHHHHHHHHHH
Confidence 999999999989999763 3568899999999999999999999999999877653 3445454 45
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhh
Q 010396 268 MIESGFALAVAF-LINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGT 346 (511)
Q Consensus 268 ~id~~~al~va~-lIn~ailivaA~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt 346 (511)
+.|+.+++.... ++|.++++++|+++|+++-. +++.|++|+++.|||.+|++|+++|++|+++|||||++|+|
T Consensus 241 ~~d~~~~i~~~~~~v~~~ilv~aaa~l~~~~~~------~~~~~~~~~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~ 314 (390)
T TIGR01197 241 INEFVIALFTAALFVNTNILVVAGATLFNSNNN------ADAADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGT 314 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC------cCcCCHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 566666665544 47999999999999864311 12357899999999999999999999999999999999999
Q ss_pred hhhHHHhhhccCCCccchhhHHHHHHHHHHHHHHHHHHhCcchhHhHHHHHH
Q 010396 347 YAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIAS 398 (511)
Q Consensus 347 ~agq~vm~Gfl~~~~~~~~r~litr~iaiiP~liv~~~~g~~~~~~LLi~sq 398 (511)
++||++||||+|+|.++|.|++.||+++++|++++..+.|..+|.++++++|
T Consensus 315 ~ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQ 366 (390)
T TIGR01197 315 YSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQ 366 (390)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 9999999999999999999999999999999999888876677999999988
No 4
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-74 Score=602.68 Aligned_cols=380 Identities=40% Similarity=0.617 Sum_probs=342.9
Q ss_pred CcchHHHHHHhhhHHHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCC
Q 010396 39 DKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYP 118 (511)
Q Consensus 39 ~~~~~~~~l~~lGPG~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~ 118 (511)
++..+|+.++++||||+|+++|+||||++|++|+|++|||+|+|++++++++++++|++++|+|++|||+++|.|||+|+
T Consensus 9 ~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~ 88 (416)
T COG1914 9 KRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYL 88 (416)
T ss_pred hHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 010396 119 KVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (511)
Q Consensus 119 ~~~~~~lwl~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~ 198 (511)
|++.+++|+.+|++++++|++|++|+|+|+|++||+|+.++++++++++++++..+ |||++|+++..++.++.+||.+
T Consensus 89 ~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~--~~r~~E~~v~~l~~~~~i~~~~ 166 (416)
T COG1914 89 PGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLK--GYRLLERVVLILGLVLVILFVY 166 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887765 7899999999999999999999
Q ss_pred HHhhcCCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHhHhhhccCCcchhhHHHHHHHHHHHHHHHHHHH
Q 010396 199 ELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVA 278 (511)
Q Consensus 199 ~~~~~~P~~~~v~~G~~vP~~~~~~~~~~avaiiGatimPh~lflhSslv~~r~~~~~~~~~~~a~~~~~id~~~al~va 278 (511)
+++..+|+|+++.+|.++|+.|+.+.++.++|++|||||||++|+||+.+|++.. ++++.+++.|+.++|+.+++..+
T Consensus 167 ~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~--~~~~~~~~~~~~~~d~~i~~~~a 244 (416)
T COG1914 167 VAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI--KGEENLRALRYSRIDTIIGMIIA 244 (416)
T ss_pred HHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc--cchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988656789999999999999999999999998433 33345678899999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHhhhccC
Q 010396 279 FLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLD 358 (511)
Q Consensus 279 ~lIn~ailivaA~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm~Gfl~ 358 (511)
.++|.+++++++..+|.++.. ++ ..+++++++.++|.+|+.+..+|++++++||++|+++++|++|++||||++
T Consensus 245 ~lv~~ail~~aa~~~~~~~~~-~~-----~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~ 318 (416)
T COG1914 245 LLVNLAILIVAAAGFHNSGPN-QD-----VADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLN 318 (416)
T ss_pred HHHHHHHHHHHHHhhcCCCcc-cc-----ccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhc
Confidence 999999999999999876531 11 247889999999999999999999999999999999999999999999999
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCcch
Q 010396 359 LRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASITAITWIIGSLIMIINVYYLATS-FIKFLFHGNLK 432 (511)
Q Consensus 359 ~~~~~~~r~litr~iaiiP~liv~~~~g~~~~~~LLi~sq~~~~~~~~a~~ii~lN~~lv~~~-~~~~~~~~~~~ 432 (511)
++.++|.||++||+++++|++++.+..| ++.++|++|| ++..+..++....++++..+. .++.+.|+...
T Consensus 319 ~~~~~~~r~~i~~~~~~ip~~~i~i~~g--~~~~lL~~sq--vl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~ 389 (416)
T COG1914 319 WRIPLWRRRLITRTFAIVPGLAIIILFG--DPARLLVFSQ--VLLSVILPFALIPLLLLTSDKKLMGDYKNPRWL 389 (416)
T ss_pred ccCchHhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHH--HHHHHHHHHHHHHHHHHHcChhhhhcccchHHH
Confidence 9999999999999999999988888888 5999999965 445566677777777776544 34455555433
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=5e-61 Score=500.53 Aligned_cols=344 Identities=38% Similarity=0.608 Sum_probs=309.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 010396 66 FETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTA 145 (511)
Q Consensus 66 i~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~iaii~~di~eviG~A 145 (511)
|+|++|+||+|||+|+|++++++++++++|++++|+|++|||++.|.|||+|||++.+++|+..++++++++++|++|++
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChH
Q 010396 146 FALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGAT 225 (511)
Q Consensus 146 ial~lLfgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~~~~~~P~~~~v~~G~~vP~~~~~~~~ 225 (511)
+++|+++|+|.+.+++++++++++++++.+.+||++|++++.++.+|.+||+++++.++|||+++.+|++.|++|+.+.+
T Consensus 81 ~al~ll~g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~ 160 (358)
T PF01566_consen 81 IALNLLFGIPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSL 160 (358)
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHH
Confidence 99999999999999999999999988866777899999999999999999999999999999999999777999975678
Q ss_pred HHHHHHhccchhhHHHHHHHhHhhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccc
Q 010396 226 GLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQAS 305 (511)
Q Consensus 226 ~~avaiiGatimPh~lflhSslv~~r~~~~~~~~~~~a~~~~~id~~~al~va~lIn~ailivaA~v~~~~g~~~~~~~~ 305 (511)
..++|++|||+||||+|+||++++||+++.+++..+++.|+.++|+.+++.+++++|.++++++|.++|+++..
T Consensus 161 ~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~------ 234 (358)
T PF01566_consen 161 LFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSE------ 234 (358)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------
Confidence 99999999999999999999999999988744211267889999999999999999999999999999844432
Q ss_pred ccccchHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhcchhhhhhhHHHhhhccCCCccchhhHHHHHHHHHHHHHHHHHH
Q 010396 306 CKDLDLNKASFLLRNVLG-SWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALI 384 (511)
Q Consensus 306 ~~~~~l~~a~~~L~~~lG-~~A~~lFaigLlaAg~SStitgt~agq~vm~Gfl~~~~~~~~r~litr~iaiiP~liv~~~ 384 (511)
..+++|++++|+|.+| +|++++|++|+++|+|||+++.+++++++++++++++.+++.|+..+|...+.|++++.+.
T Consensus 235 --~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (358)
T PF01566_consen 235 --VETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALL 312 (358)
T ss_pred --hhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2468899999999999 8999999999999999999999999999999999999999999999999999999888887
Q ss_pred hCcch-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010396 385 GGSAG-AGQLIIIASITAITWIIGSLIMIINVYYLA 419 (511)
Q Consensus 385 ~g~~~-~~~LLi~sq~~~~~~~~a~~ii~lN~~lv~ 419 (511)
.+... |.++++++| ++..+..+++...++++.-
T Consensus 313 ~~~~~~~~~ll~~~~--v~~~~~lP~~~~~l~~l~n 346 (358)
T PF01566_consen 313 IGAPGAPVQLLIFAQ--VLNSLLLPFVAIPLLLLAN 346 (358)
T ss_pred hcchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHc
Confidence 66554 478888855 3334555555555555543
No 6
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.79 E-value=0.0002 Score=77.85 Aligned_cols=117 Identities=9% Similarity=0.143 Sum_probs=75.9
Q ss_pred HHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHhhcCCCHHHHHHhhCCCh-hHHHH
Q 010396 55 LVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALI--------IQSLAANLGVVTGKHLAEHCRNEYPKV-PNFIL 125 (511)
Q Consensus 55 L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~--------~Q~laaRlgvvTGk~Lae~~r~~y~~~-~~~~l 125 (511)
-+.+++++.+.+......+.++|+...|.......++++ +....-|.+ -.++.|..++||+++ .++..
T Consensus 50 s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~ 126 (471)
T TIGR02119 50 TLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN---AITINDVLKARYNNKFLVWLS 126 (471)
T ss_pred HHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHcCCCchHHHH
Confidence 344567777777777778888887633332222222222 222233333 468999999999954 45555
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH
Q 010396 126 WVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (511)
Q Consensus 126 wl~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~ 174 (511)
.+...+..+.....+..|.+..++.++|+|.+.++++.++.+.+.-.++
T Consensus 127 ~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~G 175 (471)
T TIGR02119 127 SISLLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFG 175 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 5555555566667889999999999999999999887776444443333
No 7
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.71 E-value=9e-05 Score=78.92 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=82.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHhhcCCCHHHHHHhhCCC-hhHHHHHHH
Q 010396 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASC----AALIIQSLAANLGVVTGKHLAEHCRNEYPK-VPNFILWVL 128 (511)
Q Consensus 54 ~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i----~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~-~~~~~lwl~ 128 (511)
+-+.+.+++.+......+.+.++|+..+|..+...+ .++++...--|.+ ..+..|.+++||++ ..+...-+.
T Consensus 12 ~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~~ 88 (407)
T TIGR00813 12 ASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVLS 88 (407)
T ss_pred HHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHHH
Confidence 344566888888888888999999888776554332 2333333333444 67899999999998 455554444
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH
Q 010396 129 AEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (511)
Q Consensus 129 ~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~ 174 (511)
..+..+..-..++.|.+..++.++|+|.+.++++.++.+.+...++
T Consensus 89 ~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~G 134 (407)
T TIGR00813 89 LILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFG 134 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHc
Confidence 4555666677889999999999999999999887776554444443
No 8
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.67 E-value=0.00072 Score=73.84 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=72.7
Q ss_pred HHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHhhcCCCHHHHHHhhCCChh-HHHHHH
Q 010396 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASC--------AALIIQSLAANLGVVTGKHLAEHCRNEYPKVP-NFILWV 127 (511)
Q Consensus 57 s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i--------~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~-~~~lwl 127 (511)
.+.+++.+......+...++|+...|......+ ++..+....-|.+ ..+..|..+++|++.. ++...+
T Consensus 53 ~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~T~~e~l~~Ryg~~~~~~~~~i 129 (483)
T PRK09442 53 IATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN---AVTLNDMLRARYQSRLLVWLASL 129 (483)
T ss_pred HHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHhCChHHHHHHHH
Confidence 345667777777777777777775554332222 2222333344444 4778999999999654 444434
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHH
Q 010396 128 LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLAL 173 (511)
Q Consensus 128 ~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l 173 (511)
...+..+.....+..|.+..++.++|+|.+.++++..+.+.+.-.+
T Consensus 130 ~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~ 175 (483)
T PRK09442 130 SLLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAF 175 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 3444555566778889999999999999999988777654433333
No 9
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.67 E-value=2.8e-05 Score=82.47 Aligned_cols=112 Identities=16% Similarity=0.231 Sum_probs=84.1
Q ss_pred HHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCHHHHHHhhCCChh--HHHHHHHHHHH
Q 010396 56 VSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII-QSLAANLGVVTGKHLAEHCRNEYPKVP--NFILWVLAEIA 132 (511)
Q Consensus 56 ~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~-Q~laaRlgvvTGk~Lae~~r~~y~~~~--~~~lwl~~~ia 132 (511)
..+..++.+++....+.+.++|+.-+|..+...+...++ --++.|+=-....+..|.+++||++.. ++..++...+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 345688999999999999999999999887766655544 346788888888999999999999888 66666666666
Q ss_pred HHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 010396 133 IVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFST 167 (511)
Q Consensus 133 ii~~di~eviG~Aial~lLfgipl~~gvlit~~~t 167 (511)
.+.....+..|.+..++.++|+|.+.++++..+.+
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~ 131 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIV 131 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred hhhhhhccccccccchhhccchhhhHHHHHHHHHH
Confidence 66667788899999999999999998887776543
No 10
>PRK09395 actP acetate permease; Provisional
Probab=98.61 E-value=0.001 Score=74.09 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=87.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCCHHHHHHhhCC-ChhHHHHHHHH
Q 010396 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII--QSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (511)
Q Consensus 53 G~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~--Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~lwl~~ 129 (511)
|+-+.+.++..+++......+..+|+.-.|..+- ..+++++ -.++.|+=-..-.+..|..++||+ |..+...-+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~-~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIG-FLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 4456667788888888888888999887665443 3232221 223555544455789999999998 45777766666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH
Q 010396 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (511)
Q Consensus 130 ~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~ 174 (511)
.+..+.....+..|.+..++.++|+|.+.++++.++.+.+...++
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~G 200 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFG 200 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Confidence 666667778889999999999999999999988877665555554
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.60 E-value=0.00036 Score=74.52 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=101.6
Q ss_pred HhhhHHHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHhhCCChhHHHH
Q 010396 48 AYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVT--GKHLAEHCRNEYPKVPNFIL 125 (511)
Q Consensus 48 ~~lGPG~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvT--Gk~Lae~~r~~y~~~~~~~l 125 (511)
+.+|-.+++....+|.|=+.==.++|...=.-.+..++++-++++.-+.+-+|.-.-+ |.++.+..+|++||.++++.
T Consensus 4 ~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~ 83 (394)
T PF03222_consen 4 SILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI 83 (394)
T ss_pred hHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence 3567777788888999988877765443333344555555566666777777777655 88999999999999999988
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhh------CchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 010396 126 WVLAEIAIVACDIPEVIGTAFALNMLF------KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAE 199 (511)
Q Consensus 126 wl~~~iaii~~di~eviG~Aial~lLf------gipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~ 199 (511)
|+...+...+...+-..|.+--+.-++ ++|.+.+.++..+..-.+.+ .|.|.++|+...++..|.+.|+..
T Consensus 84 ~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~---~g~~~v~~~n~~lv~~~i~~~~~l 160 (394)
T PF03222_consen 84 GISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVY---FGTKAVDRINRVLVFGMIISFIIL 160 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776554444444444444433333333 35556555443322222223 244678888888888888888877
Q ss_pred HhhcCCCHH
Q 010396 200 LGYAKPEAK 208 (511)
Q Consensus 200 ~~~~~P~~~ 208 (511)
....-|+|.
T Consensus 161 ~~~~~p~~~ 169 (394)
T PF03222_consen 161 VVYLIPHWN 169 (394)
T ss_pred HHHHhhhcC
Confidence 766666553
No 12
>PRK12488 acetate permease; Provisional
Probab=98.59 E-value=0.0012 Score=73.50 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=88.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCCHHHHHHhhCC-ChhHHHHHHHH
Q 010396 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII--QSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (511)
Q Consensus 53 G~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~--Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~lwl~~ 129 (511)
|+-+++.++...++......+..+|+.-+|..+ +...++++ -.++.|+=-..-.+..|.+++||+ |..+...-+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 555667788888888888888999998877653 33333322 234544444444789999999998 56787776666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH
Q 010396 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (511)
Q Consensus 130 ~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~ 174 (511)
.+..+..-..+..|.+..++.++|+|.+.++++.++.+.+...++
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~G 198 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc
Confidence 667677788899999999999999999999888776555444444
No 13
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.59 E-value=0.00057 Score=74.80 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=72.9
Q ss_pred HHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHH-HH-HHHHHHHHHhhc-----CCCHHHHHHhhCCChh---HHHHH
Q 010396 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASCAA-LI-IQSLAANLGVVT-----GKHLAEHCRNEYPKVP---NFILW 126 (511)
Q Consensus 57 s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~-~~-~Q~laaRlgvvT-----Gk~Lae~~r~~y~~~~---~~~lw 126 (511)
++.++....+........++|+.-.|..+ +..++ ++ .-.++.|+-..+ -.+..|.+++||++.. +...-
T Consensus 48 ~At~~s~~~~~G~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~a 126 (487)
T TIGR02121 48 GASDMSGWLLMGLPGALYVTGLSELWIAI-GLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISA 126 (487)
T ss_pred HHHHHhHHHHHhhHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHH
Confidence 44556666666666677788887777754 32222 21 222344544333 2469999999999543 33333
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH
Q 010396 127 VLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (511)
Q Consensus 127 l~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~ 174 (511)
+...+..+.....+..|.+..++.++|+|.+.+++++++.+.+...++
T Consensus 127 i~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~G 174 (487)
T TIGR02121 127 LIILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFG 174 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhh
Confidence 333334444456677888889998999999999888776555444444
No 14
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.56 E-value=0.00061 Score=75.80 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=87.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCHHHHHHhhCC-ChhHHHHHHHH
Q 010396 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL--IIQSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (511)
Q Consensus 53 G~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~--~~Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~lwl~~ 129 (511)
|+-++..+++..++......+.++|++-+|..+ ....++ ..-.++.|+--..-.+..|.+++||+ |..+....+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 445666788888888888888999999877553 333333 12234555544445789999999996 55677666656
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH
Q 010396 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (511)
Q Consensus 130 ~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~ 174 (511)
.+..+.....+..|.+..++.++|+|.+.+++++++.+.+...++
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~G 198 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 666666677889999999999999999999888877655554444
No 15
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.54 E-value=0.00055 Score=75.21 Aligned_cols=121 Identities=10% Similarity=0.015 Sum_probs=80.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhc-----CCCHHHHHHhhCCCh---hHHH
Q 010396 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL-IIQSLAANLGVVT-----GKHLAEHCRNEYPKV---PNFI 124 (511)
Q Consensus 54 ~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~-~~Q~laaRlgvvT-----Gk~Lae~~r~~y~~~---~~~~ 124 (511)
+-+.+.++....+......+.++|+.-.|..+-..+..+ ....++.|+-.-+ -.+..|..++||++. .+..
T Consensus 49 ~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~ 128 (502)
T PRK15419 49 LSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRII 128 (502)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHH
Confidence 334556788888888888888999988786553332222 2333466655433 247999999999854 3333
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH
Q 010396 125 LWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (511)
Q Consensus 125 lwl~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~ 174 (511)
..+...+..+.....+..|.+..++.++|+|.+.++++.++.+.+.-.++
T Consensus 129 ~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 129 SALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIG 178 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 33333444444556677888999999999999999888776555554444
No 16
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.32 E-value=0.012 Score=65.69 Aligned_cols=119 Identities=12% Similarity=0.153 Sum_probs=83.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCCh-hHHHHHH
Q 010396 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILV----ASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV-PNFILWV 127 (511)
Q Consensus 53 G~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLl----a~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~-~~~~lwl 127 (511)
|+-+.+.++...........+.++||+-+|..+- ..++.+++-..--|.+. .+..|..++||+++ .++...+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 4445556777777777777788888887666531 12344555555566665 47999999999844 5666555
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH
Q 010396 128 LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (511)
Q Consensus 128 ~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~ 174 (511)
...+..+.....+..|.+..++.++|+|.+.++++.++.+.+...++
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~G 163 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLG 163 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 55556666677788889999999999999999888776554444444
No 17
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.24 E-value=0.0027 Score=68.18 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=94.5
Q ss_pred HhhhHHHHHHHhhcCCChHHHHHHHHHh-hhhHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCCHHHHHHhhCCChhHH
Q 010396 48 AYIGPGFLVSIAYIDPGNFETDLQSGAQ-YKYELLWIILVASCAAL---IIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (511)
Q Consensus 48 ~~lGPG~L~s~a~idpGni~t~~~aGA~-~Gy~LLWvlLla~i~~~---~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 123 (511)
+.+|-.++++...+|.|=+.==.++|.. |-..+++.++.--+|.+ .+-|...+. -.|.++-+..||++||.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~--~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV--PADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCHHHHHHHHhChHHHH
Confidence 5678889999999999999887777653 33333333332222333 222322222 24688999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH-HHHh---h--CchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 010396 124 ILWVLAEIAIVACDIPEVIGTAFA-LNML---F--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFF 197 (511)
Q Consensus 124 ~lwl~~~iaii~~di~eviG~Aia-l~lL---f--gipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~ 197 (511)
+.|+...+.......+-..|.+-- -|.+ + ++|.+.+.++..+....+.+. |.|.++|+...++..|.++|+
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~---g~~~v~~~n~~L~~~~ii~~~ 158 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCV---GTSSVDLFNRFLFSAKIIFLV 158 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHH
Confidence 887766554444333333331111 1111 2 356665554433322223333 557889999999888888888
Q ss_pred HHHhhcCCCHH
Q 010396 198 AELGYAKPEAK 208 (511)
Q Consensus 198 ~~~~~~~P~~~ 208 (511)
......-|+|.
T Consensus 159 ~~~~~l~p~~~ 169 (403)
T PRK15132 159 VMLALMMPHIH 169 (403)
T ss_pred HHHHHHHHhcC
Confidence 77666667665
No 18
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.21 E-value=0.0087 Score=65.84 Aligned_cols=113 Identities=13% Similarity=0.177 Sum_probs=77.7
Q ss_pred cCCChHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhc----CCCHHHHHHhhCC-ChhHHHHHHHHHHHHH
Q 010396 61 IDPGNFETDLQSGAQYKYELLWIILVASCAAL-IIQSLAANLGVVT----GKHLAEHCRNEYP-KVPNFILWVLAEIAIV 134 (511)
Q Consensus 61 idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~-~~Q~laaRlgvvT----Gk~Lae~~r~~y~-~~~~~~lwl~~~iaii 134 (511)
+.+..+.........+|+.-+|......+..+ ..-..+-|+=-.+ -.++.|..++||+ +..+...-+...+..+
T Consensus 54 ~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i 133 (493)
T COG0591 54 TSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIIIVFFI 133 (493)
T ss_pred HHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 33333344444444559999999887643333 4445566666666 6789999999999 7777776666666666
Q ss_pred HhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHH
Q 010396 135 ACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLAL 173 (511)
Q Consensus 135 ~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l 173 (511)
.....++.|.+..++..+|+|.+.+..+....+.+.-++
T Consensus 134 ~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~ 172 (493)
T COG0591 134 PYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFL 172 (493)
T ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 777778888888889999999888877765544333333
No 19
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.13 E-value=0.0091 Score=64.63 Aligned_cols=119 Identities=22% Similarity=0.242 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHH
Q 010396 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWI 158 (511)
Q Consensus 79 ~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~iaii~~di~eviG~Aial~lLfgipl~~ 158 (511)
+-++.+++.++++.++-...+-.|.-||.+=...-|..+|++.+++.-+...+..++-..-+++=.+.+.+...++|.|+
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~ 132 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWA 132 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHH
Confidence 35789999999999999999999999999988888998998888766555555556555555543444433336789999
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 010396 159 GVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAEL 200 (511)
Q Consensus 159 gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~~ 200 (511)
++++.++.+.+... +|+|.++++-+..+-.+.+.|.+..
T Consensus 133 ~ili~g~l~~l~~i---fG~r~l~~l~~~a~~~~~~lf~~l~ 171 (442)
T COG1457 133 GILIIGVLMTLVTI---FGYRALHKLERIAVPLLLLLFLYLL 171 (442)
T ss_pred HHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888765544443 4555555555555555555555444
No 20
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.11 E-value=0.0062 Score=65.52 Aligned_cols=269 Identities=16% Similarity=0.166 Sum_probs=152.6
Q ss_pred HhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------HHHHHHhhCCChhHHHHHHH
Q 010396 58 IAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKH---------LAEHCRNEYPKVPNFILWVL 128 (511)
Q Consensus 58 ~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~---------Lae~~r~~y~~~~~~~lwl~ 128 (511)
++-+|+||++--..|=+.=|..-+..+.++.+++....+.-.-|+....+. ..--+++..++++ ...++
T Consensus 30 a~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~--la~~f 107 (416)
T PF01235_consen 30 AGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKW--LAILF 107 (416)
T ss_pred HhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccch--HHHHH
Confidence 357999999988888788888888888888888888888888888775533 4445555555432 22222
Q ss_pred HHHHHHH--h--hHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh--
Q 010396 129 AEIAIVA--C--DIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGY-- 202 (511)
Q Consensus 129 ~~iaii~--~--di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~~~~-- 202 (511)
+...+.+ . .+.+.--.+.+++.-|++|.|...++..+.+.++ .+ -|.|++-++...++=+|++.|+...+.
T Consensus 108 ai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l~~~v-i~--GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii 184 (416)
T PF01235_consen 108 AIFLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAILVALV-IF--GGIKRIAKVSEKLVPFMAILYILGGLIII 184 (416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH-HH--cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111 1 2222223355566668998776443333322222 22 257888888888888888877765432
Q ss_pred -cCC-----CHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHhHhhhccCC----------------cchhhH
Q 010396 203 -AKP-----EAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIP----------------RSVRSI 260 (511)
Q Consensus 203 -~~P-----~~~~v~~G~~vP~~~~~~~~~~avaiiGatimPh~lflhSslv~~r~~~----------------~~~~~~ 260 (511)
.|. -..+++++-|-|+- ..=|.+|++++-- ++... .|+.- +.++..
T Consensus 185 ~~n~~~ip~~~~~If~~AF~~~a-------a~GG~~G~~i~~a---i~~Gv--~Rg~fSNEAG~Gsa~~a~a~a~~~hP~ 252 (416)
T PF01235_consen 185 IINIDQIPAAFSLIFSSAFTPKA-------AFGGFAGSTIMMA---IRQGV--ARGLFSNEAGLGSAPIAHAAAETDHPV 252 (416)
T ss_pred HhhhhhHHHHHHHHHHHHcCCcc-------chhhHHHHHHHHH---HHHhh--hhhhccCCCCCChhHHHHHHhcCCCcH
Confidence 221 22345555554432 1245566666421 22221 12211 111223
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 010396 261 KEAC---RFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLAS 337 (511)
Q Consensus 261 ~~a~---~~~~id~~~al~va~lIn~ailivaA~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~A~~lFaigLlaA 337 (511)
|+.+ -...+|+. +-+.++..++++++.- + . .++. ...+=..++++..+|+|+.++.++.++.-
T Consensus 253 ~QGl~~~~~vFiDTi----iVCt~TalvIl~tG~~-~-~---~~~~-----~g~~l~~~Af~~~~g~~g~~~v~i~l~lF 318 (416)
T PF01235_consen 253 RQGLVQMFEVFIDTI----IVCTITALVILVTGVW-S-W---GSGL-----EGAALTQAAFSTVLGSWGPYFVAIALFLF 318 (416)
T ss_pred HHeeeeeehHhHHHH----HHHHHHHHHhhccCCC-C-C---CCcc-----hHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3321 12344543 2223344444433321 1 0 1111 11223467889999999999999999999
Q ss_pred hhhcchhhhhhhHHHhhhcc
Q 010396 338 GQSSTITGTYAGQYVMQGFL 357 (511)
Q Consensus 338 g~SStitgt~agq~vm~Gfl 357 (511)
++||.++..+-|+...+=..
T Consensus 319 afTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 319 AFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999998888876665444
No 21
>PRK11375 allantoin permease; Provisional
Probab=98.05 E-value=0.035 Score=61.00 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHH
Q 010396 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (511)
Q Consensus 78 y~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l 125 (511)
++-++++++++++..++-.+.++.|.-+|.+-.-.+|..||++...+.
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~ 107 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFP 107 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHH
Confidence 456888999999999999999999999999999999999998765443
No 22
>PRK10484 putative transporter; Provisional
Probab=97.98 E-value=0.049 Score=60.32 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=58.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHH
Q 010396 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL-IIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEI 131 (511)
Q Consensus 53 G~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~-~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~i 131 (511)
|+=+.+.++..+++......+.++|+..+|..+...+... ..-..+.|+--.-=.+..|..++||++..+...-....+
T Consensus 46 ~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i 125 (523)
T PRK10484 46 AGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLI 125 (523)
T ss_pred HHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHH
Confidence 3344555788888888888888888776532222221111 111123333322235789999999998766543332222
Q ss_pred HHHHhhHHH-HHHHHHHHHH------hhCchhHHHHHHH
Q 010396 132 AIVACDIPE-VIGTAFALNM------LFKIPVWIGVLLT 163 (511)
Q Consensus 132 aii~~di~e-viG~Aial~l------Lfgipl~~gvlit 163 (511)
..+...++. ..+.+.+++- ++|+|.+.++.++
T Consensus 126 ~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~ 164 (523)
T PRK10484 126 GYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLL 164 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHH
Confidence 222222222 2233444443 4688877666543
No 23
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.98 E-value=0.027 Score=60.92 Aligned_cols=75 Identities=9% Similarity=0.115 Sum_probs=53.4
Q ss_pred hcCCChHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 010396 60 YIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVA 135 (511)
Q Consensus 60 ~idpGni~t~~~aGA~~G---y~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~iaii~ 135 (511)
-+...++.+..... .+| ++-++.+++++++..++-.+.++.|.-||.+-....|..||++...+.-+.-.+..++
T Consensus 27 ~~~v~~~~~Ga~l~-~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~ig 104 (442)
T TIGR00800 27 AFNIATWAIGALGL-PLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAIG 104 (442)
T ss_pred hhhHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 33444444444333 233 4567888899999999999999999999999999999999987776554443333333
No 24
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.95 E-value=0.049 Score=59.13 Aligned_cols=151 Identities=14% Similarity=0.124 Sum_probs=98.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCHHHHHHhhCCChhHHHHHHHHH
Q 010396 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVT---GKHLAEHCRNEYPKVPNFILWVLAE 130 (511)
Q Consensus 54 ~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvT---Gk~Lae~~r~~y~~~~~~~lwl~~~ 130 (511)
+......+|.|=+.==.++|...=+-++-.++++-++++.--++-.|.-.-. |.|..+..+|++||.++.+.|+.-.
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 4455568999998888888877666666666666666666655666765554 6899999999999999888776544
Q ss_pred HHHHH------hhHHHHHHHHHHHHHhhC---chhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 010396 131 IAIVA------CDIPEVIGTAFALNMLFK---IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG 201 (511)
Q Consensus 131 iaii~------~di~eviG~Aial~lLfg---ipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~~~ 201 (511)
+.... ..+++.+..-+ .|- +| +|.+...++..+ ++..+-..|-|.++|+...++..+.++|+...+
T Consensus 106 f~ly~ll~aY~~~itn~l~sfl-~~q-l~~~~~~r~l~slifv~---~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 106 FAICPLLWIYGVTITNTFMTFW-ENQ-LGFAPLNRGFVALFLLL---LMAFVIWFGKDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhh-cCcCCccHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 22233222111 111 33 355554433322 222223345689999999999999999998888
Q ss_pred hcCCCHHH
Q 010396 202 YAKPEAKE 209 (511)
Q Consensus 202 ~~~P~~~~ 209 (511)
..-|+|..
T Consensus 181 ~LiP~w~~ 188 (443)
T PRK13629 181 SLIPYWNS 188 (443)
T ss_pred HHHHHcCH
Confidence 88887763
No 25
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.94 E-value=0.03 Score=60.04 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHhhc-CCCHHHHHHhhCCChhHHHHHHHHHHHHH------HhhHHHHHHHHHH
Q 010396 81 LWIILVASCAALIIQSLAAN------LGVVT-GKHLAEHCRNEYPKVPNFILWVLAEIAIV------ACDIPEVIGTAFA 147 (511)
Q Consensus 81 LWvlLla~i~~~~~Q~laaR------lgvvT-Gk~Lae~~r~~y~~~~~~~lwl~~~iaii------~~di~eviG~Aia 147 (511)
.|..+++.+.++++....+| +.--. |+++.|..++++||+++..+++.-.+... +....+..+.-+.
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~ 112 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLV 112 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667766666666666 34444 88999999999999888766543322221 2222222222111
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 010396 148 LNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEA 207 (511)
Q Consensus 148 l~lLfgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~~~~~~P~~ 207 (511)
-.++...|.+... ..+...++.+.-+.|.|.+.|+...++..+.+.++...+..-|+|
T Consensus 113 ~~~~~~~p~~~i~--~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 113 NQLGTAPPLRGLL--SLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred HhcCCCCcHHHHH--HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1122334444211 121222333445568888999888887676666666555554544
No 26
>PRK09664 tryptophan permease TnaB; Provisional
Probab=97.89 E-value=0.03 Score=60.37 Aligned_cols=314 Identities=11% Similarity=0.029 Sum_probs=147.9
Q ss_pred HhhhHHHHHHHhhcCCChHHHH-HHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHH
Q 010396 48 AYIGPGFLVSIAYIDPGNFETD-LQSGAQYKYELLWIILVASCA---ALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (511)
Q Consensus 48 ~~lGPG~L~s~a~idpGni~t~-~~aGA~~Gy~LLWvlLla~i~---~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 123 (511)
+.+|=.++++...+|.|=++=- ..+|+-|-++.+-.++.-..| ++.+-|..-|.. .|.++....|+..||.+++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 6788778888889999877643 334444444433322222222 334666666664 6889999999999999998
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh----h--CchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 010396 124 ILWVLAEIAIVACDIPEVIGTAFALNML----F--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFF 197 (511)
Q Consensus 124 ~lwl~~~iaii~~di~eviG~Aial~lL----f--gipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~ 197 (511)
+.|+....-..+-..+=+.|.+--++-+ . ++|.+.+.++..+..-.+++. |-|.+|++-..++..|.++|+
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~---gt~~vd~~nr~l~~~~ii~f~ 164 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWI---SSLAASRITSLFLGLKIISFV 164 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHH
Confidence 8887543222222222222222212111 2 456655443333222233333 346677776677777777777
Q ss_pred HHHhhcCC--CHHHhhccccccccCCCC----hHHHHHHHhccchhhHHHHHHHhHhhhccCCcchhhHHHHHHHHHHHH
Q 010396 198 AELGYAKP--EAKEVLHGLFVPQLKGNG----ATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIES 271 (511)
Q Consensus 198 ~~~~~~~P--~~~~v~~G~~vP~~~~~~----~~~~avaiiGatimPh~lflhSslv~~r~~~~~~~~~~~a~~~~~id~ 271 (511)
......-| ++....+. |.-.++. ....++.++=+...=|+ .-+++++.. +++.+++|++ ..+.+
T Consensus 165 ~~~~~l~~~i~~~~L~~~---~~~~~~~~~~~~i~~alPVl~~SFgfh~--iIPsl~~y~--~~d~~~~~ka---Il~Gs 234 (415)
T PRK09664 165 IVFGSFFFQVDYSILRDA---TSTTAGTSYFPYIFMALPVCLASFGFHG--NIPSLIICY--GKRKDKLIKS---VVFGS 234 (415)
T ss_pred HHHHHHhhcccHHHHhcC---ccccccchHHHHHHHHHHHHHHhhhCCC--cchHHHHHh--CccHHHHHHH---HHHHH
Confidence 75554433 43333222 2111111 12222222211100010 112333322 2222223333 44566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHH-HHhhhhHHHHHHHHHHHHhhhhcchhhhhhh-
Q 010396 272 GFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLL-RNVLGSWSSKLFAIALLASGQSSTITGTYAG- 349 (511)
Q Consensus 272 ~~al~va~lIn~ailivaA~v~~~~g~~~~~~~~~~~~~l~~a~~~L-~~~lG~~A~~lFaigLlaAg~SStitgt~ag- 349 (511)
.+.+++-++-..+++. ...++++... .+ +..++.+....+ +..-+++..++..+=.+.|-.+|-+..+++-
T Consensus 235 ~IpLviY~~W~~~ilG----~lp~~~~~~~-~~--~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~ 307 (415)
T PRK09664 235 LLALVIYLFWLYCTMG----NIPRESFKAI-IS--SGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLF 307 (415)
T ss_pred HHHHHHHHHHHHHHhc----CCCHHHHHHH-HH--cCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554444444432 0111110000 00 001222222222 2233445444444444445556666655553
Q ss_pred HHHhhhccCCCccchhhHHHHHHHHHHHHHHHHHHh
Q 010396 350 QYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIG 385 (511)
Q Consensus 350 q~vm~Gfl~~~~~~~~r~litr~iaiiP~liv~~~~ 385 (511)
++..|.+ +++.++ ..|..+-.+..+|.++++.++
T Consensus 308 D~l~D~~-~~~~~~-~~r~~~~~ltflPPl~~al~~ 341 (415)
T PRK09664 308 DYLADLF-KIDNSH-GGRFKTVLLTFLPPALLYLIF 341 (415)
T ss_pred HHHHHHh-CCCCcc-ccceeeehhhHhhhHHHHHHh
Confidence 3444444 544333 345566677799999988875
No 27
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=97.87 E-value=0.014 Score=61.35 Aligned_cols=72 Identities=19% Similarity=0.072 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhh-HHHHHHHHHHHHhhhhcchhhhhhhHHHhhhccCCCccchhhHHHHHHHHHHHHHHHHHHh
Q 010396 313 KASFLLRNVLGS-WSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIG 385 (511)
Q Consensus 313 ~a~~~L~~~lG~-~A~~lFaigLlaAg~SStitgt~agq~vm~Gfl~~~~~~~~r~litr~iaiiP~liv~~~~ 385 (511)
.....++..+|. +...+..++.+.+-.+|.+..+++-.-..+..++++.++ .+|.....++.+|.++++.+.
T Consensus 254 ~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 254 GLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK-KGRFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCchhhhhhHHhHHHHHHHh
Confidence 344455555554 466777777777777777766665432243333432222 224455667778888877664
No 28
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.87 E-value=0.021 Score=61.89 Aligned_cols=280 Identities=17% Similarity=0.222 Sum_probs=141.9
Q ss_pred HHHHHHHhhcCCCHHHHHHhhCC-ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH
Q 010396 96 SLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (511)
Q Consensus 96 ~laaRlgvvTGk~Lae~~r~~y~-~~~~~~lwl~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~ 174 (511)
..+-|+==.-+-+.+|.+.+||. ++.|++.-+...+......+++..|++.-+..++|+|...++.+..+...+...++
T Consensus 93 L~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~G 172 (529)
T COG4147 93 LIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLG 172 (529)
T ss_pred HHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhc
Confidence 34555555566778999999886 56677766666666677788999999999999999999988887765443333333
Q ss_pred hcchhH--HHHHHHHHHHHHHHHHHHHHhh----cCCCHHHhhcccccccc--------CC---CC---hHHHH-HHHhc
Q 010396 175 QYGVRK--LEFLIAFLVFTMAGCFFAELGY----AKPEAKEVLHGLFVPQL--------KG---NG---ATGLA-ISLLG 233 (511)
Q Consensus 175 ~yg~r~--lE~v~~~Lv~im~l~F~~~~~~----~~P~~~~v~~G~~vP~~--------~~---~~---~~~~a-vaiiG 233 (511)
|.+- .-.+++..+.+....+...+.. -+|.... ..+...+.. |+ .+ .+.+. .=++|
T Consensus 173 --GM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~G 249 (529)
T COG4147 173 --GMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLF-AEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVG 249 (529)
T ss_pred --chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHH-HHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHc
Confidence 2111 1222333222222222222211 1232111 111111211 11 11 12222 33468
Q ss_pred cchhhHHHHHHHhHhhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC-----------C
Q 010396 234 AMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPE-----------D 302 (511)
Q Consensus 234 atimPh~lflhSslv~~r~~~~~~~~~~~a~~~~~id~~~al~va~lIn~ailivaA~v~~~~g~~~~-----------~ 302 (511)
+.=+||.+ -|=.... +.||+.|-..+-.. ...-+=+...++..+|..+-.++...+ |
T Consensus 250 TAgLPHil--------~RFfTvp--~~k~AR~Sv~wA~~--fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D 317 (529)
T COG4147 250 TAGLPHIL--------MRFFTVP--DAKEARKSVFWATG--FIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGD 317 (529)
T ss_pred cCCCCeEE--------EEEEecC--cHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCCCCCcchhhccccccc
Confidence 88899853 2433322 24555432221111 111122333344444444333333221 2
Q ss_pred cccccccch-HHHHHHHHHhhh--hHHHHHHHHHHHHhhhhcchhhhhhhHH-Hhh----hccCCCccchhhHHHHHHHH
Q 010396 303 QASCKDLDL-NKASFLLRNVLG--SWSSKLFAIALLASGQSSTITGTYAGQY-VMQ----GFLDLRLKPWLRNFLTRCLA 374 (511)
Q Consensus 303 ~~~~~~~~l-~~a~~~L~~~lG--~~A~~lFaigLlaAg~SStitgt~agq~-vm~----Gfl~~~~~~~~r~litr~ia 374 (511)
.+......- +++.-++.|.+| +|-..+.+.|-||+.+|..-.-++.... +.. .-+|.+.++.+|....|...
T Consensus 318 ~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~ase~~~v~vaRi~~ 397 (529)
T COG4147 318 ANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIAV 397 (529)
T ss_pred ccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccceehhHHHHH
Confidence 221111122 567777788877 6777777778888887764443443322 112 22455555555555666665
Q ss_pred HHHHHHHHHHhCcchhH
Q 010396 375 IVPSLIVALIGGSAGAG 391 (511)
Q Consensus 375 iiP~liv~~~~g~~~~~ 391 (511)
.+- .+++.+-|.+.++
T Consensus 398 v~~-~vva~~lgi~~~g 413 (529)
T COG4147 398 VIL-GVVAILLGILPPG 413 (529)
T ss_pred HHH-HHHHHHheecCCc
Confidence 553 3455555666555
No 29
>PRK10483 tryptophan permease; Provisional
Probab=97.83 E-value=0.072 Score=57.48 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=89.8
Q ss_pred HHhhhHHHHHHHhhcCCChHHHH-HHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCCHHHHHHhhCCChhH
Q 010396 47 FAYIGPGFLVSIAYIDPGNFETD-LQSGAQYKYELLWIILVASCAA---LIIQSLAANLGVVTGKHLAEHCRNEYPKVPN 122 (511)
Q Consensus 47 l~~lGPG~L~s~a~idpGni~t~-~~aGA~~Gy~LLWvlLla~i~~---~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~ 122 (511)
.+.+|=.++++...+|.|=++=- ..+|+-|.++++-.++.-.+|. +.+-|..-|.. -|.++...-|+..||+++
T Consensus 11 ~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g~ 88 (414)
T PRK10483 11 PSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGWN 88 (414)
T ss_pred CcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHH
Confidence 35788889999999999987643 3344555555443333333332 24666666654 578899999999999998
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-----CchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 010396 123 FILWVLAEIAIVACDIPEVIGTAFALNMLF-----KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFF 197 (511)
Q Consensus 123 ~~lwl~~~iaii~~di~eviG~Aial~lLf-----gipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~ 197 (511)
++.|+....-..+-..+=+.|.+--++-++ ++|.+.+.++..+..-.+++. |-|..|++...++..|.+.|+
T Consensus 89 ~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~---gt~~vd~~n~~l~~~~i~~f~ 165 (414)
T PRK10483 89 VVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWL---STKAVSRMTAIVLGAKVITFF 165 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHH
Confidence 887764432222222222222222222222 568777766554433334444 346777777777777877777
Q ss_pred HHHhh
Q 010396 198 AELGY 202 (511)
Q Consensus 198 ~~~~~ 202 (511)
.....
T Consensus 166 ~~~~~ 170 (414)
T PRK10483 166 LTFGS 170 (414)
T ss_pred HHHHH
Confidence 66544
No 30
>PRK10249 phenylalanine transporter; Provisional
Probab=97.77 E-value=0.095 Score=56.89 Aligned_cols=105 Identities=15% Similarity=0.267 Sum_probs=52.6
Q ss_pred hhhHHHHHHHh-hcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHH-H
Q 010396 49 YIGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL-W 126 (511)
Q Consensus 49 ~lGPG~L~s~a-~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l-w 126 (511)
.+|=|-++..+ ++.||...+..-.++-.+| +-.-+++.+.+..+.|++.|+=. +| +.....++.+++.+.+.. |
T Consensus 30 ~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~--li~~~~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~~gw 105 (458)
T PRK10249 30 LIALGGAIGTGLFLGIGPAIQMAGPAVLLGY--GVAGIIAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWGPFAGFLSGW 105 (458)
T ss_pred hhhhhcccchhHHHHHHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhChHHHHHHHH
Confidence 44444444444 5667775553222222222 11223344455566677766655 45 667788899998766543 3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhC-chhHH
Q 010396 127 VLAEIAIVACDIPEVIGTAFALNMLFK-IPVWI 158 (511)
Q Consensus 127 l~~~iaii~~di~eviG~Aial~lLfg-ipl~~ 158 (511)
... ++.......|..+.+.-++.+++ .|.|.
T Consensus 106 ~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 137 (458)
T PRK10249 106 NYW-VMFVLVGMAELTAAGIYMQYWFPDVPTWI 137 (458)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHcCCcCcHHH
Confidence 221 12222334555544444444443 45554
No 31
>PRK11017 codB cytosine permease; Provisional
Probab=97.71 E-value=0.11 Score=55.75 Aligned_cols=109 Identities=12% Similarity=0.117 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCchhH
Q 010396 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVA-CDIPEVIGTAFALNMLFKIPVW 157 (511)
Q Consensus 79 ~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~iaii~-~di~eviG~Aial~lLfgipl~ 157 (511)
+-++++++++++...+-.+.++.|.-+|.+-...+|..||++...+.-+.-.+..++ .-++..+ .+.+++-++|+|.+
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~-~~~~l~~~~~~~~~ 121 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAM-FAIPVVKATGLDIN 121 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhCCCHH
Confidence 456788889999999999999999999999999999999987766543333232222 2223333 23455556788776
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 010396 158 IGVLLTGFSTLILLALQQYGVRKLEFLIAFL 188 (511)
Q Consensus 158 ~gvlit~~~t~~lL~l~~yg~r~lE~v~~~L 188 (511)
.++++..+......+.+..+.+++|++...+
T Consensus 122 ~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~ 152 (404)
T PRK11017 122 LLIVLSGLLMTVTAYFGISALTILSRIAVPA 152 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544444444444433455555554433
No 32
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.70 E-value=0.017 Score=62.16 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=52.3
Q ss_pred HHhhcCCChHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHHHH
Q 010396 57 SIAYIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAI 133 (511)
Q Consensus 57 s~a~idpGni~t~~~aGA~~G---y~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~iai 133 (511)
..+-+-+.++.+-... ..+| ++-+.++++++++..++-.+.++.|.-||.+-....|..||.+.+.+.-+...+..
T Consensus 19 ~~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~ 97 (440)
T PF02133_consen 19 FGANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLLRAISA 97 (440)
T ss_dssp CHHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHHHHHHH
Confidence 4445556666666655 5565 34678888999999999999999999999999999999999877665544433333
Q ss_pred HH
Q 010396 134 VA 135 (511)
Q Consensus 134 i~ 135 (511)
++
T Consensus 98 ig 99 (440)
T PF02133_consen 98 IG 99 (440)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 33
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.64 E-value=0.14 Score=55.35 Aligned_cols=267 Identities=21% Similarity=0.208 Sum_probs=128.2
Q ss_pred HHHHHH--hhcCCChH-----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCC-ChhHHH
Q 010396 53 GFLVSI--AYIDPGNF-----ETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYP-KVPNFI 124 (511)
Q Consensus 53 G~L~s~--a~idpGni-----~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~ 124 (511)
||++++ +.+|-||+ .++...|..|=---+-.+++ .++++..+=--+|--++++..+..|+--| |.+.+.
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~---~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~ 89 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLL---VGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWI 89 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHH---HhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhh
Confidence 445444 47999997 34555555553222223333 34444333344555678888888888766 667766
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-----------------HHhhC--ch-hH---HHHHHHHHHHHHHHHHHhcchhH-
Q 010396 125 LWVLAEIAIVACDIPEVIGTAFAL-----------------NMLFK--IP-VW---IGVLLTGFSTLILLALQQYGVRK- 180 (511)
Q Consensus 125 lwl~~~iaii~~di~eviG~Aial-----------------~lLfg--ip-l~---~gvlit~~~t~~lL~l~~yg~r~- 180 (511)
=|+-...+.+...---++|.-+.- .-.|+ +. .+ .+-++..+.+.. +-+.|.+|
T Consensus 90 G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~---iv~~GV~~G 166 (439)
T COG0733 90 GWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTAL---IVSRGVKKG 166 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHH---HHHHhHHhh
Confidence 665332211111101111111100 00110 11 11 111222222222 23446555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCCCHHHhhccccccccCC---CChHHHHHHH------hccchhhHHHHHHHhHhh
Q 010396 181 LEFLIAFLVFTMAGCFFAELGY--AKPEAKEVLHGLFVPQLKG---NGATGLAISL------LGAMVMPHNLFLHSALVL 249 (511)
Q Consensus 181 lE~v~~~Lv~im~l~F~~~~~~--~~P~~~~v~~G~~vP~~~~---~~~~~~avai------iGatimPh~lflhSslv~ 249 (511)
+||..+.++=.+.++|++.++. ..|...|=++=++.|..+. .+.+..+.|- +|..+| +-+-|++=|
T Consensus 167 IEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~m---itYsSYL~k 243 (439)
T COG0733 167 IEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIM---ITYSSYLSK 243 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHH---HHHHhhcCc
Confidence 8888777776666666665543 4666666666666776432 1111112111 232222 224455433
Q ss_pred hccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHH
Q 010396 250 SRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKL 329 (511)
Q Consensus 250 ~r~~~~~~~~~~~a~~~~~id~~~al~va~lIn~ailivaA~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~A~~l 329 (511)
++.. .+.+.--...|+.+++..++.|=-++...+.. .+.|. .-.-..+.++-..+ | +|..-..+
T Consensus 244 ~~~l------~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~--~~~Gp------gL~Fi~LP~if~~m-p-~G~~~~~l 307 (439)
T COG0733 244 KSDL------VSSALSIVLLNTLISLLAGLVIFPALFSFGAD--ASQGP------GLVFIVLPAVFNQM-P-LGTLFGIL 307 (439)
T ss_pred ccch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCC------eeehhHHHHHHHhC-c-hhHHHHHH
Confidence 2222 22344445567776666554443332222222 11111 01112333333444 3 78888899
Q ss_pred HHHHHHHhhhhcchh
Q 010396 330 FAIALLASGQSSTIT 344 (511)
Q Consensus 330 FaigLlaAg~SStit 344 (511)
|-+.++.|++||++.
T Consensus 308 FFl~l~fAalTS~iS 322 (439)
T COG0733 308 FFLLLLFAALTSAIS 322 (439)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
No 34
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.64 E-value=0.15 Score=55.53 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 314 a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
...+++...|+++..++.++++.+.+++..++.+++.+.+
T Consensus 277 ~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l 316 (471)
T PRK11387 277 FVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRML 316 (471)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455666677888888888888888888888777776555
No 35
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.51 E-value=0.061 Score=55.99 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=93.2
Q ss_pred hHHHHHHhhhHHHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHhhCCCh
Q 010396 42 SWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKV 120 (511)
Q Consensus 42 ~~~~~l~~lGPG~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvv-TGk~Lae~~r~~y~~~ 120 (511)
..|..++++| -++.++|--.=++. |-=..||+.=.|-+.+++++-.+.-....++|-. --+|..|..+.-.++.
T Consensus 5 ~~~~~f~~ig--~~vGAGfAsGqEi~---QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~ 79 (349)
T COG3949 5 FMRWAFAFIG--TVVGAGFASGQEIM---QFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPK 79 (349)
T ss_pred HHHHHHHHHH--HhhcccccchHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHH
Confidence 3455666776 45555444333343 3335688888899999888887777777777655 4566677777776666
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 010396 121 PNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLV 189 (511)
Q Consensus 121 ~~~~lwl~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv 189 (511)
+....=++.....+.+..-...|++..++-.+|+|.|+|.++......+.+++++ .++++++....+
T Consensus 80 ~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~--vegi~tvn~iI~ 146 (349)
T COG3949 80 FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGR--VEGIITVNGIIT 146 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhc--ccceeeeheeHH
Confidence 6555444444455555556667777778888999999997777665566666664 467777654443
No 36
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.30 E-value=0.34 Score=51.67 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhh----
Q 010396 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACD-IPEVIGTAFALNMLF---- 152 (511)
Q Consensus 78 y~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~iaii~~d-i~eviG~Aial~lLf---- 152 (511)
++-+.++++++++...+--+.++.|.-||.+-.-.+|..||++.+.+.-+.-.+..++-. ++-..| +.+++.++
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~g-g~~l~~~~~~~~ 107 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVG-AKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 667888999999999999999999999999999999999998877655444333333322 222332 33444443
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 010396 153 KI-PVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (511)
Q Consensus 153 gi-pl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~ 198 (511)
|. +...+..+.++...+ .--+|+|+++++..+.+.++.+.+++
T Consensus 108 ~~~~~~~~~~i~~~l~~~---~~~~G~~~i~~~~~~~~~~~~i~~~~ 151 (386)
T TIGR02358 108 GEESPMLWILIVGILVTL---WLLSGPLAFVWLNNWSVWLLLIATLW 151 (386)
T ss_pred CCCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 233333333322222 22345565655554444444444433
No 37
>PRK11021 putative transporter; Provisional
Probab=97.09 E-value=0.55 Score=50.02 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 314 a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
....++..+|++...++.+..+.+.+++..+..++..+++
T Consensus 248 ~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l 287 (410)
T PRK11021 248 LPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLV 287 (410)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889888788888888888887776666654444
No 38
>PRK15049 L-asparagine permease; Provisional
Probab=96.90 E-value=0.97 Score=49.78 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=28.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 315 ~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
...++...++++..+..+.++.+.+++..+..++..+.+
T Consensus 292 ~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l 330 (499)
T PRK15049 292 VTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRIL 330 (499)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555656777788888888888888888888776555
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.81 E-value=1 Score=48.56 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHH
Q 010396 85 LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (511)
Q Consensus 85 Lla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (511)
++..+.++.+-|++.++=.. | +.-.-.++.|++...+.
T Consensus 54 v~~l~~al~~aEl~s~~P~~-G-G~y~y~~~~~g~~~gf~ 91 (445)
T PRK11357 54 LIVIPQMCVYAELSTAYPEN-G-ADYVYLKNAGSRPLAFL 91 (445)
T ss_pred HHHHHHHHHHHHHHhhcCCC-C-CceeeHHHhcCChhHHH
Confidence 45666777888888887653 3 23345677788876544
No 40
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=96.80 E-value=1.1 Score=48.86 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=30.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 315 ~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
....+..+|++...+..++.+.+.+++..+...++..++
T Consensus 271 ~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~ 309 (473)
T TIGR00905 271 AAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVP 309 (473)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567789998889999888888888888777776555
No 41
>TIGR00909 2A0306 amino acid transporter.
Probab=96.72 E-value=1.1 Score=47.79 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=32.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHhhhc
Q 010396 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 356 (511)
Q Consensus 315 ~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm~Gf 356 (511)
....+...|++...+..++...+.+++..+..++..+.+..+
T Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 267 SLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888888999999999998888888776665433
No 42
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.71 E-value=1.2 Score=48.28 Aligned_cols=282 Identities=15% Similarity=0.126 Sum_probs=133.7
Q ss_pred HHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC-H----HHHHHhhCC-ChhHHHHH
Q 010396 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTG----KH-L----AEHCRNEYP-KVPNFILW 126 (511)
Q Consensus 57 s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTG----k~-L----ae~~r~~y~-~~~~~~lw 126 (511)
-.+-+|.||+..-..+=+.-|.+-+.-..++.+++......-.-++..-. ++ . .--+++..+ |+...++-
T Consensus 57 la~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~lfa 136 (425)
T TIGR00835 57 LAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVLFA 136 (425)
T ss_pred HHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHHHH
Confidence 34568888887777774444555554455555555555544444444433 22 1 123344443 44333222
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh---
Q 010396 127 VLAEIAIVA-CDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGY--- 202 (511)
Q Consensus 127 l~~~iaii~-~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~~~~--- 202 (511)
+. .++..+ ...-+.--.+-.++-.+++|.|...++.++.+..+ . .-|.|++-++...++-+|.+.|+...+.
T Consensus 137 ~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l~~l~~~v-i--~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~ 212 (425)
T TIGR00835 137 VF-LIASFGIGNMVQANAIASALSNAFNVPKLVTGIVLTVLTALI-I--FGGLKRIAKISSVVVPFMALLYVIMALYIII 212 (425)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-H--hcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 111111 01111111223334346888876544333322222 1 2367888888877777777766433221
Q ss_pred -----cCCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHH-HHHhHhh-hccC---------CcchhhHHHHHHH
Q 010396 203 -----AKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLF-LHSALVL-SRKI---------PRSVRSIKEACRF 266 (511)
Q Consensus 203 -----~~P~~~~v~~G~~vP~~~~~~~~~~avaiiGatimPh~lf-lhSslv~-~r~~---------~~~~~~~~~a~~~ 266 (511)
..|-...++++-|-|+- .+=|.+|++++--..+ ...++-. |-+. .+.++..|+.+ .
T Consensus 213 ~n~~~lp~~~~~If~~AF~~~a-------~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl-~ 284 (425)
T TIGR00835 213 MNIEQLPAVISLIFRSAFGGDA-------AAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGL-V 284 (425)
T ss_pred HhHHHHHHHHHHHHHHhCCchh-------hHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcCCCcHHHHH-H
Confidence 12444455566554431 1234555544321110 0000000 0010 01122234432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhh
Q 010396 267 YMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGT 346 (511)
Q Consensus 267 ~~id~~~al~va~lIn~ailivaA~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt 346 (511)
..++..+--++-+.++..++++++. +.+ +++.+ ...+ ...+++..+|.|..++.++.++.-++||.++..
T Consensus 285 ~~~~vfiDTivvCt~Talvil~tg~--~~~---~~~~~---g~~l--t~~af~~~~g~~g~~~v~i~~~lFaftTii~~~ 354 (425)
T TIGR00835 285 QMLGVFIDTMIVCTATALVILLSGV--WNN---GEGLS---GAQL--TQQALSYGLGSFGAVFVAVALFLFAFSTIIGWY 354 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCc--cCC---CCCCc---HHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333222333344444444432 110 01100 1122 335788888999999999999999999999988
Q ss_pred hhhHHHhhhccCCC
Q 010396 347 YAGQYVMQGFLDLR 360 (511)
Q Consensus 347 ~agq~vm~Gfl~~~ 360 (511)
|-++...+=..+.|
T Consensus 355 yyge~~~~yl~~~~ 368 (425)
T TIGR00835 355 YYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHHHHhcCCC
Confidence 88876665433544
No 43
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.59 E-value=2.6 Score=50.41 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhhcchhhhhhhHHHhh
Q 010396 326 SSKLFAIALLASGQSSTITGTYAGQYVMQ 354 (511)
Q Consensus 326 A~~lFaigLlaAg~SStitgt~agq~vm~ 354 (511)
...+..+|.+.+.++|..+..++...++.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~ 414 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQ 414 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999988888766664
No 44
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=96.58 E-value=1.5 Score=47.69 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=24.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 316 ~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
+.++...+++...++.+.++.+.+++.....++..+.+
T Consensus 284 ~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 321 (469)
T PRK11049 284 ELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRML 321 (469)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666777777777777777766666665554
No 45
>PRK10238 aromatic amino acid transporter; Provisional
Probab=96.52 E-value=1.6 Score=47.32 Aligned_cols=133 Identities=13% Similarity=0.201 Sum_probs=63.1
Q ss_pred hhhHHHHHHHh-hcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHH-H
Q 010396 49 YIGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL-W 126 (511)
Q Consensus 49 ~lGPG~L~s~a-~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l-w 126 (511)
.+|=|-.+..+ ++.||...++.-.++-++| +..-+...+.+.-+-|+++|+=. +| +..+-.++.+++...+.. |
T Consensus 21 ~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~--~i~gi~~~~v~~s~aEl~s~~P~-aG-g~y~~~~~~~g~~~gf~~Gw 96 (456)
T PRK10238 21 LIALGGAIGTGLFLGSASVIQSAGPGIILGY--AIAGFIAFLIMRQLGEMVVEEPV-AG-SFSHFAYKYWGSFAGFASGW 96 (456)
T ss_pred HHHhhccccchHHHhhHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHcCcHHHHHHHH
Confidence 34444444443 5677776664322333332 22222334444455677777765 34 567777888998766554 3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 010396 127 VLAEIAIVACDIPEVIGTAFALNMLFK-IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIA 186 (511)
Q Consensus 127 l~~~iaii~~di~eviG~Aial~lLfg-ipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~ 186 (511)
... ++.+.....|..+.+.-++..++ .|.|...++..+....+-..+..-+.++|.++.
T Consensus 97 ~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~ 156 (456)
T PRK10238 97 NYW-VLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFA 156 (456)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 221 12222223444444444454443 566655443332111111122222456776543
No 46
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=96.44 E-value=1.8 Score=46.72 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHH
Q 010396 85 LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (511)
Q Consensus 85 Lla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 123 (511)
+.+.+.++.+-|+++++=. +| +.-+-.|+.|++...+
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf 87 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGY 87 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHH
Confidence 5566777788888888753 33 5667788999987764
No 47
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=96.41 E-value=2.1 Score=47.29 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=31.0
Q ss_pred HhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHH
Q 010396 74 AQYKYELLWIILVASC-----AALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (511)
Q Consensus 74 A~~Gy~LLWvlLla~i-----~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (511)
|.+|+++..-.+++.+ .+..+.||+++..-.+| +...-.|+-+|+++++.
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 4677777544444433 45666777766541233 66677888899877664
No 48
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.02 E-value=2.8 Score=44.92 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=45.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHH
Q 010396 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (511)
Q Consensus 53 G~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l 125 (511)
|+..=.-++|.||+..-..-|.+.|.+..+.++--.+-+..+=-++----..+| +-.+..+++|||+....+
T Consensus 1 g~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~~g-G~~~~l~~~~g~~f~~lf 72 (378)
T TIGR00796 1 GFMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALALVG-GGYDSLSARIGKVFGILF 72 (378)
T ss_pred ChHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeeecC-CCHHHHHHHhChHHHHHH
Confidence 344556689999999999888888877665554444444333333222222244 445667788898877665
No 49
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=96.00 E-value=3.1 Score=45.27 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 314 a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
....++..+|+++..++.++.+.+.+++..+.++++.+.+
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~ 305 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIP 305 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778889999999999999999999988888875554
No 50
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=95.93 E-value=3.1 Score=44.84 Aligned_cols=73 Identities=8% Similarity=0.105 Sum_probs=40.4
Q ss_pred hhhHHHHHHHh-hcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHH
Q 010396 49 YIGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (511)
Q Consensus 49 ~lGPG~L~s~a-~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l 125 (511)
.++=|-++..+ ++.||......-.++-. ..+..-++..+.++.+-|++.|+=.. -+..+..++.+++...+..
T Consensus 21 ~i~ig~~IGsGif~~~g~~~~~~G~~~~i--~~~i~~v~~~~~a~~~aEl~s~~P~~--Gg~~~~~~~~~g~~~gf~~ 94 (452)
T TIGR01773 21 MLSIAGVIGAGLFVGSGSAIASAGPAALL--AYLLAGLLVVFIMRMLGEMAVANPDT--GSFSTYADDAIGRWAGFTI 94 (452)
T ss_pred HHHHhhhhhchHHHhhHHHHHhcCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHhCcHHHHHH
Confidence 44444444443 56666555432211211 22233344455666777787776542 3567888999998876543
No 51
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=95.87 E-value=3.4 Score=44.68 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=85.8
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CHHHHHHhhCCChhHHHHH
Q 010396 50 IGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGK---HLAEHCRNEYPKVPNFILW 126 (511)
Q Consensus 50 lGPG~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk---~Lae~~r~~y~~~~~~~lw 126 (511)
.|=-+++.-..+|.|=+.-=.+++-..=+-.+-.++++-++.+.-+++-.|.-.-+++ +..+..++++|+.+++...
T Consensus 12 ~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~ 91 (415)
T COG0814 12 LGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIG 91 (415)
T ss_pred HHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHH
Confidence 3444555566788887766665543221222223344555566666666666666554 7899999999999999876
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh----hC---chhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 010396 127 VLAEIAIVACDIPEVIGTAFALNML----FK---IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAE 199 (511)
Q Consensus 127 l~~~iaii~~di~eviG~Aial~lL----fg---ipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~ 199 (511)
+...+...+...+=..+.+--+.-. ++ .+...+.++.......+.+.++ +...|....++..+.++++..
T Consensus 92 ~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~---~~~lk~ts~l~~~~v~~~~~l 168 (415)
T COG0814 92 LSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGT---LAVLKITSLLVFGKVIYLVLL 168 (415)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHHHHH
Confidence 6554443333222222221111111 12 4554444433322222334433 556666777777777777766
Q ss_pred HhhcCCCHHH
Q 010396 200 LGYAKPEAKE 209 (511)
Q Consensus 200 ~~~~~P~~~~ 209 (511)
.+.--|.|..
T Consensus 169 ~~~~~~~~~~ 178 (415)
T COG0814 169 VVYLIPHWNP 178 (415)
T ss_pred HHHHhcccCH
Confidence 6666666543
No 52
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=95.71 E-value=3.7 Score=44.07 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHH
Q 010396 86 VASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (511)
Q Consensus 86 la~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l 125 (511)
...+.++.+-|++.|+-.. | +...-.++.+++..++..
T Consensus 52 ~~~~~a~~~aEl~s~~P~~-G-g~y~~~~~~~G~~~gf~~ 89 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPTA-G-GGYGFARRAFGPWGGFLA 89 (442)
T ss_pred HHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHhCcHHHHHH
Confidence 3445667799999998753 3 556778899999776643
No 53
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.68 E-value=4.1 Score=44.33 Aligned_cols=278 Identities=16% Similarity=0.163 Sum_probs=134.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHHH
Q 010396 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIA 132 (511)
Q Consensus 53 G~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~ia 132 (511)
|+..=.-+.|.||+.-=..-|.+.|-+..|..+--.+-+..+=-++.=--..+|.+..+.- ++-+|+....+.+..-++
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~~~~~~~l~-~~v~~~f~~if~~~i~l~ 87 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKSGGGIEDLA-SRVGPKFALIFTILIYLS 87 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHh-cccCcHHHHHHHHHHHHH
Confidence 5666678999999999999999999998888887777777666655433333555665544 445666666555444332
Q ss_pred HH-HhhHHHHHHH--HHHHHHhhC----chhHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010396 133 IV-ACDIPEVIGT--AFALNMLFK----IPVWIGVLLTGFSTLILLALQQYG-VRKLEFLIAFLVFTMAGCFFAELGYAK 204 (511)
Q Consensus 133 ii-~~di~eviG~--Aial~lLfg----ipl~~gvlit~~~t~~lL~l~~yg-~r~lE~v~~~Lv~im~l~F~~~~~~~~ 204 (511)
+- ..-++-..-+ .++..-+++ ++++.-.++-...++.+. +++.. .+++-|+..=...++ +..++.....+
T Consensus 88 IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~-~~p~kivd~iGk~LTP~LL~~-l~ilii~~i~~ 165 (427)
T PF05525_consen 88 IGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLS-LNPSKIVDRIGKFLTPILLIL-LAILIIKGIFS 165 (427)
T ss_pred HHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 21 1111111111 122222334 333333332222222221 22211 334444432221111 11222222233
Q ss_pred CCH--HHhhccccccccC---C--CCh-HHHHH--HHhccchhhHHHHHHHhHhhhccCCcchhhHHHHHHHHHHHHHHH
Q 010396 205 PEA--KEVLHGLFVPQLK---G--NGA-TGLAI--SLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFA 274 (511)
Q Consensus 205 P~~--~~v~~G~~vP~~~---~--~~~-~~~av--aiiGatimPh~lflhSslv~~r~~~~~~~~~~~a~~~~~id~~~a 274 (511)
|.- .+. ++-. ++-| + +|. ...++ =..|.++.- + .++|+.+++ |+..|+...-..++
T Consensus 166 p~g~~~~~-~~~y-~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~-------~-i~~~g~~~~----k~~~~~~~~ag~ia 231 (427)
T PF05525_consen 166 PIGPPQAP-SGAY-ASNPFFKGFLEGYQTMDALAALAFGIIIIN-------A-IRQKGYKDK----KEIKKYTIKAGLIA 231 (427)
T ss_pred CCCCcccc-chhh-hhhHHHHHHHHHHhhhhHHHHHHHHHHHHH-------H-HHHhCCCCH----HHHHHHHHHHHHHH
Confidence 321 010 0000 0000 0 111 11111 122332221 1 244554422 23445555555666
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhh-HHHh
Q 010396 275 LAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAG-QYVM 353 (511)
Q Consensus 275 l~va~lIn~ailivaA~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~ag-q~vm 353 (511)
...-.+|-....-++|..- +..+++.+ ..+=..+.-+..+|+.+..++++..+.|.+++.+.-+.+. +|.-
T Consensus 232 ~~lL~~IY~gL~~lGa~~~---~~~~~~~~-----g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~ 303 (427)
T PF05525_consen 232 GILLALIYGGLAYLGATSS---GSFPDDIN-----GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFS 303 (427)
T ss_pred HHHHHHHHHHHHHHccCCc---ccccCCCC-----HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666555666432 11111111 1222445556889999999999999999999999766654 5544
Q ss_pred hh
Q 010396 354 QG 355 (511)
Q Consensus 354 ~G 355 (511)
|-
T Consensus 304 ~~ 305 (427)
T PF05525_consen 304 EL 305 (427)
T ss_pred HH
Confidence 43
No 54
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.57 E-value=4.1 Score=43.54 Aligned_cols=118 Identities=21% Similarity=0.292 Sum_probs=71.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHH----------HHHHHHHHHHHHHHhhcCCCHHHHHHhhCCCh-hH
Q 010396 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVAS----------CAALIIQSLAANLGVVTGKHLAEHCRNEYPKV-PN 122 (511)
Q Consensus 54 ~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~----------i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~-~~ 122 (511)
+..++.|+..++.... -|+.|.|.|-|+++-.. +++=-+-+.+=|++.. ++.|..|.||... ..
T Consensus 48 mt~~aTYisaSSFigG--pgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAl---tI~D~l~~RY~s~fl~ 122 (473)
T COG4145 48 MTFTATYISASSFIGG--PGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNAL---TINDLLFARYQSRFLV 122 (473)
T ss_pred hHHHHHHHHHhhhcCC--CcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCe---eHHHHHHHHhcchHHH
Confidence 3344555555544433 25778888999554321 1112233444445444 4778888888643 33
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhc
Q 010396 123 FILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQY 176 (511)
Q Consensus 123 ~~lwl~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~y 176 (511)
|..-+...+.-+.....+++|.|=-++...|+|-..|.++.++...+--+++.+
T Consensus 123 ~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 123 WLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcce
Confidence 333333344555566778999988888778999999998888765554455544
No 55
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=95.04 E-value=6.2 Score=42.48 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=37.7
Q ss_pred hhHHHHHHHh-hcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHH
Q 010396 50 IGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (511)
Q Consensus 50 lGPG~L~s~a-~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (511)
++=|-+++.+ +.=||+++ ++|...=+..+-..+.+.+.++.+.|++.|+=. +| +..+-.|| +++.+.+.
T Consensus 15 l~vg~~IGsGif~lp~~~a---~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf~ 84 (435)
T PRK10435 15 VVAGNMMGSGIALLPANLA---SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGFQ 84 (435)
T ss_pred HHHhhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHHH
Confidence 3444444444 34466653 234321122222234466777788899988875 44 56666777 67665543
No 56
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=95.02 E-value=6.5 Score=42.66 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=38.9
Q ss_pred hhHHHHHHHh-hcCCChHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHH
Q 010396 50 IGPGFLVSIA-YIDPGNFETDLQSGAQ-YKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (511)
Q Consensus 50 lGPG~L~s~a-~idpGni~t~~~aGA~-~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l 125 (511)
+|=|-++..+ +..||...+. +|.. .=+..+..-++..+.++.+-|++.++=.. |-+..+..++.+++...+..
T Consensus 12 l~vg~~IGsGif~~~~~~~~~--~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g~~~gf~~ 86 (478)
T TIGR00913 12 IALGGTIGTGLLVGSGTALAT--GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV-SGSFATYASRFVDPAFGFAV 86 (478)
T ss_pred HHHhccccchhhhcchhHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCcHHHHHH
Confidence 4444444333 5666666553 3411 11122222334455566677787777643 43567778888888766543
No 57
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=94.30 E-value=8.5 Score=40.77 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=30.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHhh
Q 010396 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQ 354 (511)
Q Consensus 315 ~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm~ 354 (511)
....+...|++...++.+++..+.+++..+...+..+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~ 300 (426)
T PF13520_consen 261 AVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLY 300 (426)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhccccccccccccccccccccccccchhhcchhhccc
Confidence 3445555568999999999999999988888777755553
No 58
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=93.86 E-value=13 Score=41.43 Aligned_cols=276 Identities=16% Similarity=0.163 Sum_probs=122.6
Q ss_pred hhHHHHHHHhhcCCChHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CHHHHHHhhCCCh----hH
Q 010396 50 IGPGFLVSIAYIDPGNFETDL-QSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGK--HLAEHCRNEYPKV----PN 122 (511)
Q Consensus 50 lGPG~L~s~a~idpGni~t~~-~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk--~Lae~~r~~y~~~----~~ 122 (511)
+|.|+.++.+. -.... =+|+--+|.+.-+++..+ +.-+=||+..+= ++|- +.+. +.-++- ..
T Consensus 60 IGTGLfvgsG~-----~l~~aGP~g~li~y~i~G~~vy~v--m~sLGEma~~~P-~sGsF~~ya~---rfvdpa~GFa~g 128 (541)
T COG0833 60 IGTGLFVGSGK-----ALSQAGPAGLLIAYLIIGIMVYFV--MQSLGELAVFYP-VSGSFSTYAT---RFVDPAFGFALG 128 (541)
T ss_pred cccceeeecch-----hhhccCcHHHHHHHHHHHHHHHHH--HHHHHHHHhhcC-CCCchhhhhh---hhcCchHHHHHH
Confidence 67777765542 11111 356666776666655543 344568888888 6772 2332 111222 22
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--CchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 010396 123 FILWVLAEIAIVACDIPEVIGTAFALNMLF--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAEL 200 (511)
Q Consensus 123 ~~lwl~~~iaii~~di~eviG~Aial~lLf--gipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~~ 200 (511)
|--|+.-. .+--.|+..+++-++.-+ .+|.|.++.+..+..+++=.++-.+|--.|..+..+=.++.+.|++..
T Consensus 129 WnYw~~w~----v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~g 204 (541)
T COG0833 129 WNYWLNWA----VTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILG 204 (541)
T ss_pred HHHHHHHH----HHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHH
Confidence 22232211 112346666666666665 358888877665443333334444455567665443333344444433
Q ss_pred hh----cCCCHHHhhccccccccCC-CChH-HHHHHHhccchhhHHHHHHHhHhh-hcc-CCcchhhHHHHHHHHHHHHH
Q 010396 201 GY----AKPEAKEVLHGLFVPQLKG-NGAT-GLAISLLGAMVMPHNLFLHSALVL-SRK-IPRSVRSIKEACRFYMIESG 272 (511)
Q Consensus 201 ~~----~~P~~~~v~~G~~vP~~~~-~~~~-~~avaiiGatimPh~lflhSslv~-~r~-~~~~~~~~~~a~~~~~id~~ 272 (511)
+. ..|+ ++-.-.+... ++++ ---.|+++..+.-.--|-...++- .-+ .+..+|.+.+|.|...+-..
T Consensus 205 ii~~~Gg~~~-----~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl 279 (541)
T COG0833 205 IIIICGGGPT-----HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRIL 279 (541)
T ss_pred HHHhcCCCCC-----CCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHH
Confidence 22 1233 1111111111 1110 002333433332221111111110 011 11112446666664443333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccC-CCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHH
Q 010396 273 FALAVAFLINVSVISVSGAVCSSS-NINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQY 351 (511)
Q Consensus 273 ~al~va~lIn~ailivaA~v~~~~-g~~~~~~~~~~~~~l~~a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~ 351 (511)
+-+++ . +++++..+-|.. ++. +.+ .++.....-.-+++..=-+.++-++=.-++.+-+|+.=.+.|++.+
T Consensus 280 ~FYi~----s--i~~ig~lvPy~dp~Ll--~~~-~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR 350 (541)
T COG0833 280 LFYIL----S--IFVIGLLVPYNDPRLL--GNS-SSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSR 350 (541)
T ss_pred HHHHH----H--HHHheEEccCCCcccc--cCC-cCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHH
Confidence 22222 2 223344343321 111 000 0111112223344433235567778888888888888889999887
Q ss_pred Hhh
Q 010396 352 VMQ 354 (511)
Q Consensus 352 vm~ 354 (511)
.+-
T Consensus 351 ~L~ 353 (541)
T COG0833 351 MLY 353 (541)
T ss_pred HHH
Confidence 664
No 59
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=93.82 E-value=12 Score=40.59 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=26.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHhh
Q 010396 317 LLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQ 354 (511)
Q Consensus 317 ~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm~ 354 (511)
.++..-++++..+..++++.+.+++..+..+++.+.+.
T Consensus 256 ~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~ 293 (446)
T PRK10197 256 VLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLY 293 (446)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555567777777777777777777777777766553
No 60
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=93.14 E-value=16 Score=40.08 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=78.8
Q ss_pred hcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCHHHHHHhhCCChhHHHH----HHHHHHHH
Q 010396 60 YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFIL----WVLAEIAI 133 (511)
Q Consensus 60 ~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~l----wl~~~iai 133 (511)
.+|.|=..-+.++=+..|-+.+-+-+++-++.+++-+.-+-+-+. +-.+..+-+||.+|++..+.. |+.-
T Consensus 28 aIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~w---- 103 (462)
T COG1113 28 AIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFW---- 103 (462)
T ss_pred hhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHH----
Confidence 455555555555556778888888888888888888888888777 355899999999998765443 3322
Q ss_pred HHhhHHHHHHHHHHHHHhh-CchhHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 010396 134 VACDIPEVIGTAFALNMLF-KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLI 185 (511)
Q Consensus 134 i~~di~eviG~Aial~lLf-gipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~ 185 (511)
+...++|+.+.++=++.-| ++|.|..+++..+....+=...-..+..+|..+
T Consensus 104 v~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWf 156 (462)
T COG1113 104 VLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWF 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334567766666666666 589999887665432222222222345677654
No 61
>PRK10655 potE putrescine transporter; Provisional
Probab=93.09 E-value=14 Score=39.49 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=25.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 314 a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
.++.++..+|++...+..++.+.+.+++..+..+++..++
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~ 299 (438)
T PRK10655 260 FGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVF 299 (438)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788877666666666666666666555554444
No 62
>PRK10746 putative transport protein YifK; Provisional
Probab=92.99 E-value=16 Score=39.76 Aligned_cols=41 Identities=10% Similarity=0.166 Sum_probs=25.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHhhh
Q 010396 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQG 355 (511)
Q Consensus 315 ~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm~G 355 (511)
...++..-.+.+..++.+..+.+.+|+..+..+++.+.+.+
T Consensus 272 v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~ 312 (461)
T PRK10746 272 VLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYA 312 (461)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443345556666666777777777777777665543
No 63
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=92.76 E-value=18 Score=39.67 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHH
Q 010396 86 VASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (511)
Q Consensus 86 la~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (511)
++...++.+-|++.++=. +| +.-.-.++.|++...+.
T Consensus 89 ~~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~ 125 (501)
T TIGR00911 89 FSIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFL 125 (501)
T ss_pred HHHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHH
Confidence 344555666777776643 22 45667788899876654
No 64
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=92.56 E-value=5.9 Score=42.23 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHhh--cCCCHHHHHHhhCCChhHHHH
Q 010396 66 FETDLQSGAQYKYE--LLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFIL 125 (511)
Q Consensus 66 i~t~~~aGA~~Gy~--LLWvlLla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~l 125 (511)
+.--..+ +.|||- +||+++ .+++.-.+|.+.+=..-+ -||++.|.++++.+|+.+...
T Consensus 71 I~GPi~a-a~~GwlPa~lWI~~-G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf 132 (376)
T PF02554_consen 71 IVGPILA-AQFGWLPALLWIVF-GCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLF 132 (376)
T ss_pred chHHHHH-HHhcchHHHHHHHH-ccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 4444555 999996 888765 555555667776666655 699999999999999877654
No 65
>PRK10580 proY putative proline-specific permease; Provisional
Probab=92.48 E-value=18 Score=39.10 Aligned_cols=73 Identities=5% Similarity=0.108 Sum_probs=38.9
Q ss_pred hhhHHHHHHHh-hcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHH
Q 010396 49 YIGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (511)
Q Consensus 49 ~lGPG~L~s~a-~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l 125 (511)
.++=|-++..+ +..||.... .+|...=+..+-.-+...+.++.+.|++.|+=.. -+..+..++.+++...+..
T Consensus 18 ~i~vg~~IG~Gif~~~g~~~~--~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~--Gg~y~y~~~~~G~~~gf~~ 91 (457)
T PRK10580 18 FMALGSAIGTGLFYGSADAIK--MAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAA--SSFSRYAQENLGPLAGYIT 91 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHcCcHHHHHH
Confidence 34555554443 566776544 2443211222222233344455677787776542 3556677888998766543
No 66
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=92.40 E-value=1.6 Score=47.53 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 316 ~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
...+..-+++...++.++.+.+.+++.....+++.+.+
T Consensus 278 ~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l 315 (478)
T PF00324_consen 278 IAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLL 315 (478)
T ss_pred hhhhhcccccccceecccchhhhhhhhhhhhcccceee
Confidence 34555566788999999999999999988888775444
No 67
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=91.65 E-value=23 Score=38.50 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHHHHhhhh-HHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 314 ASFLLRNVLGS-WSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 314 a~~~L~~~lG~-~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
..+.+...+|. ++..++.+.++.+.+++..+..++..+.+
T Consensus 291 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 331 (482)
T TIGR00907 291 IAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMI 331 (482)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666776 66666777777777777776666654443
No 68
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=90.60 E-value=33 Score=38.46 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=28.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 316 ~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
.+++..-++++..+..++.+.+.+++..+..++..+++
T Consensus 303 ~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil 340 (557)
T TIGR00906 303 VAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVI 340 (557)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454444688899999999988888888877765544
No 69
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=89.46 E-value=39 Score=37.52 Aligned_cols=119 Identities=23% Similarity=0.231 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHhh----C
Q 010396 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPN-FILWVLAEIAIVACDIPEVIGTAFALNMLF----K 153 (511)
Q Consensus 79 ~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~-~~lwl~~~iaii~~di~eviG~Aial~lLf----g 153 (511)
+-+-.+++++++-.++-.+.+|-|...|-+-...+|..||-+.+ +...+=+.+|++=.-++..+|. .+++++. +
T Consensus 75 qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg-~av~llL~~i~~ 153 (497)
T COG1953 75 QALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGG-LAVNLLLGSIFP 153 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHhcc
Confidence 34556778888888999999999999999999999999985543 3333333444444445555443 3444432 1
Q ss_pred ---c----------hh--HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 010396 154 ---I----------PV--WIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (511)
Q Consensus 154 ---i----------pl--~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~ 198 (511)
+ +. +++-++.=+..+.+++.+-+..||+|..-..++.++.+.+++
T Consensus 154 ~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~I 213 (497)
T COG1953 154 SLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAI 213 (497)
T ss_pred ccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHH
Confidence 1 11 222222222233444444455888998887777666666554
No 70
>PRK10836 lysine transporter; Provisional
Probab=87.23 E-value=50 Score=36.13 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=26.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 316 ~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
..+++.-++++..++.+.++.+.+++.....+++.+.+
T Consensus 286 ~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l 323 (489)
T PRK10836 286 LVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRML 323 (489)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444566777778777888888777777776555
No 71
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=82.46 E-value=93 Score=35.18 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=28.1
Q ss_pred hHHHH---HHHHHHHHhhhhcchhhhhhhHHHhhhc
Q 010396 324 SWSSK---LFAIALLASGQSSTITGTYAGQYVMQGF 356 (511)
Q Consensus 324 ~~A~~---lFaigLlaAg~SStitgt~agq~vm~Gf 356 (511)
.++++ ++.++++.+..|+...+.|++.+.+-..
T Consensus 315 ~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~am 350 (554)
T KOG1286|consen 315 AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYAL 350 (554)
T ss_pred cCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 35778 9999999999999999999998777443
No 72
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=80.94 E-value=77 Score=35.18 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHhhhhcchhhhhhh-HHHhhhc
Q 010396 323 GSWSSKLFAIALLASGQSSTITGTYAG-QYVMQGF 356 (511)
Q Consensus 323 G~~A~~lFaigLlaAg~SStitgt~ag-q~vm~Gf 356 (511)
|+.-..+|=+.++.+|++|.+...-.- ..++|.|
T Consensus 344 ~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~ 378 (523)
T PF00209_consen 344 GRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEF 378 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CcChHHHHHHHHHHHHhhhcCCceeceeEeeeecC
Confidence 566677888888888999888744332 2344444
No 73
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=80.21 E-value=1.1e+02 Score=34.50 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhHHH----HHHHHHHHHhhhhcchhhhhh-hHHHhhhcc
Q 010396 313 KASFLLRNVLGSWSS----KLFAIALLASGQSSTITGTYA-GQYVMQGFL 357 (511)
Q Consensus 313 ~a~~~L~~~lG~~A~----~lFaigLlaAg~SStitgt~a-gq~vm~Gfl 357 (511)
...+.+...+|+-+. -+-.+.++.+|++|.++.+-. ..|.=||-+
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~L 375 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGL 375 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCC
Confidence 456778888887543 455666777777776654332 233335543
No 74
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=79.35 E-value=1e+02 Score=33.57 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHH
Q 010396 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASC-----AALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (511)
Q Consensus 54 ~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i-----~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (511)
++..++-++-.|+.+ .|.+|...+...+++.+ .++.+-|+++++=. +| +..+-.|+.+|+.+.+.
T Consensus 10 ~~~~~~v~~~~~~~~----~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 10 IMNITAVVSLRGLPA----EAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHHHHhhcchH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHHH
Confidence 333344445555533 35566666533333332 44456666666543 22 55677888898876654
No 75
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=76.93 E-value=1.2e+02 Score=33.30 Aligned_cols=269 Identities=18% Similarity=0.198 Sum_probs=140.1
Q ss_pred HhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChh----------HHHHHH
Q 010396 58 IAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVP----------NFILWV 127 (511)
Q Consensus 58 ~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~----------~~~lwl 127 (511)
++-+|.||++--..|=+-=|-.-+....+..+++..-++.=+-|+..=.+.=. +.+|...+ +|...+
T Consensus 74 a~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~---~G~~~GGP~yYi~kGl~~r~l~v~ 150 (452)
T COG1115 74 AARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDK---DGEYRGGPAYYIEKGLGMRWLAVL 150 (452)
T ss_pred HhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCC---CCCCcCChHHHHHhhcCCcHHHHH
Confidence 45799999988888777777777766777777776666555544443221000 01122222 333333
Q ss_pred HHHHHHH---H--hhHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 010396 128 LAEIAIV---A--CDIPEVIGTAFALNMLFKIPVWI-GVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG 201 (511)
Q Consensus 128 ~~~iaii---~--~di~eviG~Aial~lLfgipl~~-gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~~~ 201 (511)
++ ++.+ + ...-+.=..+-+++--|++|.|. |+.++.+..+++ --|.|++-++...+|=.|++.|+...+
T Consensus 151 FA-~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~l~~~VI----~GGi~rIa~v~~~vVPfMA~~Yi~~~~ 225 (452)
T COG1115 151 FA-FALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLALLVALVI----FGGIKRIAKVSSKVVPFMAILYVLVAL 225 (452)
T ss_pred HH-HHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----HcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 2111 1 11222223455667778998654 555544332222 236788999988888888888876543
Q ss_pred hc---C----C-CHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHhHhhhccCC----------------cch
Q 010396 202 YA---K----P-EAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIP----------------RSV 257 (511)
Q Consensus 202 ~~---~----P-~~~~v~~G~~vP~~~~~~~~~~avaiiGatimPh~lflhSslv~~r~~~----------------~~~ 257 (511)
.. + | -...+.++-|-|+ ..+=|.+|.+++--. +... +|+.- +.+
T Consensus 226 ~Ii~~n~~~iP~~i~~If~sAF~~~-------aa~GG~~G~~v~~aI---~~Gv--~RGlfSNEAGmGsap~aaAaA~~~ 293 (452)
T COG1115 226 VIIVLNISQIPAVIALIFSSAFGPK-------AAAGGFAGYTVAQAI---RNGV--KRGLFSNEAGMGSAPIAAAAAKTD 293 (452)
T ss_pred HHHHhhHhhhHHHHHHHHHhcCCch-------hhhhhhhhHHHHHHH---HHHH--HHHhhcccccCCcchhHHHhhcCC
Confidence 32 1 1 1222333333222 223455666544322 1111 13211 011
Q ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHHH
Q 010396 258 RSIKEAC---RFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIAL 334 (511)
Q Consensus 258 ~~~~~a~---~~~~id~~~al~va~lIn~ailivaA~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~A~~lFaigL 334 (511)
+..|+.. -...+|+.+ -+-.+.+++++++.--.+.. .++ ..+ .-++++..+|+|..++.++++
T Consensus 294 hPv~QGlv~~~gvfiDT~i----VCt~Ta~iIL~sg~~~~~~~--~~G------~~l--tq~A~~~~~g~~G~~fv~i~l 359 (452)
T COG1115 294 HPVKQGLVQMLGVFIDTLV----VCTATAFIILLSGAWNSGGG--LSG------AAL--TQAAFSSHLGSWGSYFVAIAL 359 (452)
T ss_pred CcHHHhHHHHhhhhhhhhH----HhhHHHHHHHHcCCcccCCC--Cch------HHH--HHHHHHHhcCccHHHHHHHHH
Confidence 1233321 113344432 12223333333332111100 011 122 235789999999999999999
Q ss_pred HHhhhhcchhhhhhhHHHhhhccCCC
Q 010396 335 LASGQSSTITGTYAGQYVMQGFLDLR 360 (511)
Q Consensus 335 laAg~SStitgt~agq~vm~Gfl~~~ 360 (511)
+.-++||.+..-|-|+..++=..+.|
T Consensus 360 ~lFafTTIlg~yyyge~~~~fl~~~k 385 (452)
T COG1115 360 FLFAFTTILGWYYYGEKNIEFLFGSK 385 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999998888887776333333
No 76
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=74.82 E-value=1.4e+02 Score=32.86 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHH
Q 010396 52 PGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLA 129 (511)
Q Consensus 52 PG~L~s~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~ 129 (511)
=|+..=.-+.|.||+.-=..-|.+.|-+..+..+--.+-+..+=-++.=--..+|.+..+.-+ +-+|+....+....
T Consensus 13 iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~~-rv~~~f~~~f~~~i 89 (439)
T PRK15433 13 LGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLST-PIGKVAGVLLATVC 89 (439)
T ss_pred HHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhh-hcchHHHHHHHHHH
Confidence 478888889999999998888888888888887777777666665554444446556555444 45666555554443
No 77
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=74.78 E-value=1.2e+02 Score=34.60 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=59.1
Q ss_pred HhhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHHHH
Q 010396 58 IAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQS----LAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAI 133 (511)
Q Consensus 58 ~a~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~----laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~iai 133 (511)
+++++.+++..-...|++||.+-.|.-+-+.+.....-. .--|.++.| .-|-.+.+|++..++. |.+..+-.
T Consensus 58 aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~~---~~eYl~~Rf~~~~r~l-~~l~f~l~ 133 (585)
T KOG2349|consen 58 ASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVTT---MYEYLEKRFGGRVRYL-ATLSFILM 133 (585)
T ss_pred hhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCeee---hhHHHHHHhcccchhh-HHHHHHHH
Confidence 456677777777788899998887776655544433222 223444433 5577778888774443 33222222
Q ss_pred HHhhHHHHH-HHHHHHHHhhCchhHHHHHHHHH
Q 010396 134 VACDIPEVI-GTAFALNMLFKIPVWIGVLLTGF 165 (511)
Q Consensus 134 i~~di~evi-G~Aial~lLfgipl~~gvlit~~ 165 (511)
+..-+...+ --|+++|..+|+..+..+.+...
T Consensus 134 ~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ 166 (585)
T KOG2349|consen 134 IFLYLPVDMYAPALAINQVTGINLYLIVVILGL 166 (585)
T ss_pred HHhheeeeEeehHHHHHHHhccCceeehHHHHH
Confidence 222222221 24678888888776654444443
No 78
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=73.11 E-value=1.5e+02 Score=32.34 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHH
Q 010396 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (511)
Q Consensus 79 ~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (511)
.++...+...+.++.+-|+++|+=. +| +.-.-.|+.+|+...+.
T Consensus 52 ~~li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf~ 95 (475)
T TIGR03428 52 TWPVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGWF 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccHH
Confidence 3444445555666677788887763 33 45666777888766544
No 79
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=72.63 E-value=1.4e+02 Score=31.78 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 314 a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
.........|.+...+..++.+.+.+++..+.+.+....+
T Consensus 274 ~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~ 313 (466)
T COG0531 274 LALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313 (466)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666788888888888888888887777765444
No 80
>PRK15015 carbon starvation protein A; Provisional
Probab=71.63 E-value=64 Score=37.15 Aligned_cols=52 Identities=21% Similarity=0.367 Sum_probs=39.6
Q ss_pred HHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCHHHHHHhhCCChhHHHH
Q 010396 73 GAQYKY--ELLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFIL 125 (511)
Q Consensus 73 GA~~Gy--~LLWvlLla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~l 125 (511)
.++||| .+||+++ .+++.-.+|.+.+=...+ -||++.|+.|++.++..+...
T Consensus 108 Aa~~GwlP~~LWIl~-G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 108 AAQMGYLPGMIWLLA-GVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred HHHHcchHHHHHHHH-cceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHH
Confidence 358998 5889765 455555678877766655 699999999999999877654
No 81
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=67.30 E-value=1.5e+02 Score=30.27 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=41.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHhHhhhccCCc
Q 010396 176 YGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPR 255 (511)
Q Consensus 176 yg~r~lE~v~~~Lv~im~l~F~~~~~~~~P~~~~v~~G~~vP~~~~~~~~~~avaiiGatimPh~lflhSslv~~r~~~~ 255 (511)
||+.|+|.+..++.+++.+...+..+. +-.+.++-|.-+....+.+.++.++..+......+.....+ +.
T Consensus 73 yG~~r~E~l~~l~~~~~l~~~~~~~~~------esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~--~~-- 142 (299)
T PRK09509 73 FGHGKAESLAALAQSMFISGSALFLFL------TGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRWVVR--KT-- 142 (299)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH--Hh--
Confidence 789999999877665544322222221 22233344443322234455566666555543322222111 11
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 010396 256 SVRSIKEACRFYMIESGFA 274 (511)
Q Consensus 256 ~~~~~~~a~~~~~id~~~a 274 (511)
++..++...+..+.|...+
T Consensus 143 ~s~~l~a~~~~~~~D~~~s 161 (299)
T PRK09509 143 QSQAVRADMLHYQSDVMMN 161 (299)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 1122344444566777654
No 82
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=66.73 E-value=2.3e+02 Score=32.10 Aligned_cols=54 Identities=22% Similarity=0.360 Sum_probs=38.3
Q ss_pred HHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCHHHHHHhhCCChhHHHH
Q 010396 71 QSGAQYKY--ELLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFIL 125 (511)
Q Consensus 71 ~aGA~~Gy--~LLWvlLla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~l 125 (511)
.-+|+||| .+||+++ .++++-.+|.+-+=.--+ -||++.|..+|+.|+..+.+.
T Consensus 75 vlAAq~G~Lp~~LWIl~-G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~~ 132 (575)
T COG1966 75 ALAAQYGWLPAFLWILL-GCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVFF 132 (575)
T ss_pred HHHHHhcCcHHHHHHHH-hhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHHH
Confidence 35689996 7899765 555555566654433332 599999999999999877654
No 83
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=65.24 E-value=1.7e+02 Score=29.98 Aligned_cols=121 Identities=20% Similarity=0.200 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHhhCCChhHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHhhCc
Q 010396 82 WIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVPNFILW------VLAEIAIVACDIPEVIGTAFALNMLFKI 154 (511)
Q Consensus 82 WvlLla~i~~~~~Q~laaRlgvv-TGk~Lae~~r~~y~~~~~~~lw------l~~~iaii~~di~eviG~Aial~lLfgi 154 (511)
..++++.+.+.++-.+..|+.-- .|+++.|..++.+||+....+- .....+....+..|++.+ .++-.-
T Consensus 36 i~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~----~~lp~T 111 (320)
T PF03845_consen 36 ISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKT----YLLPET 111 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCcC
Confidence 44566666677777777777764 8999999999999998766432 222223333344444332 233357
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHH
Q 010396 155 PVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA--KPEAKE 209 (511)
Q Consensus 155 pl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~~~~~--~P~~~~ 209 (511)
|.|.-.++..+ +..+.-+.|.+.+-|....+...+.+.++...... +-||..
T Consensus 112 P~~~i~~~~ll---~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 165 (320)
T PF03845_consen 112 PIWVIILLFLL---VAAYAARKGIEVIARVAEILFPIFLILLLLILLLSIPNIDWDN 165 (320)
T ss_pred CHHHHHHHHHH---HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 87765544332 23344566766666544443333333333333333 334444
No 84
>PRK09928 choline transport protein BetT; Provisional
Probab=59.14 E-value=3.4e+02 Score=31.56 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhhcchhhhhhhHHHhhhccC------CCccchhhHHHHHHHHHHHHHHHHHHhC
Q 010396 329 LFAIALLASGQSSTITGTYAGQYVMQGFLD------LRLKPWLRNFLTRCLAIVPSLIVALIGG 386 (511)
Q Consensus 329 lFaigLlaAg~SStitgt~agq~vm~Gfl~------~~~~~~~r~litr~iaiiP~liv~~~~g 386 (511)
+..+..+...+...+|...++.+++..+-. .+.++|.|.+-...+..++. .....+|
T Consensus 410 i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~-~LL~~GG 472 (679)
T PRK09928 410 FSASVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTL-GMLMTNG 472 (679)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHH-HHHHhcC
Confidence 333333444455678888889888875532 23466777655555555533 3333444
No 85
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=46.90 E-value=3e+02 Score=27.20 Aligned_cols=18 Identities=28% Similarity=0.336 Sum_probs=13.9
Q ss_pred cchhHHHHHHHHHHHHHH
Q 010396 176 YGVRKLEFLIAFLVFTMA 193 (511)
Q Consensus 176 yg~r~lE~v~~~Lv~im~ 193 (511)
||+.|+|.+..++.++..
T Consensus 52 yG~~r~E~l~~l~~~~~l 69 (268)
T TIGR01297 52 FGHGRAEILAALLNGLFL 69 (268)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 899999998877665533
No 86
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=45.51 E-value=2.5e+02 Score=29.09 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=38.8
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHH
Q 010396 175 QYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLH 244 (511)
Q Consensus 175 ~yg~r~lE~v~~~Lv~im~l~F~~~~~~~~P~~~~v~~G~~vP~~~~~~~~~~avaiiGatimPh~lflh 244 (511)
.||+.|.|.+..++++++.+...++.+. +-+.-++.|..+....+...+++++..++-+...+.
T Consensus 74 pyGh~k~E~l~sl~~~~~i~~~g~~i~~------~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~ 137 (304)
T COG0053 74 PYGHGKAETLASLIVSILIFAAGFEILL------EAIKRLISPQPVEPPLLALGVALISIVIKEALYRYL 137 (304)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999888776655544444332 222232445555445567778888777666544443
No 87
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=42.24 E-value=4.9e+02 Score=28.42 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=37.4
Q ss_pred HHHHHHhhcCCChHHHHHH-HHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHH
Q 010396 53 GFLVSIAYIDPGNFETDLQ-SGAQYKYELLWIILVASC----AALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (511)
Q Consensus 53 G~L~s~a~idpGni~t~~~-aGA~~Gy~LLWvlLla~i----~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (511)
..+...+-++-+++..+.+ .|. ...+|.++.+.+ .+..+-|+++++=-.+| +.-.-.|+-+|+.+++.
T Consensus 15 ~~~~~~~vig~~~~~~~~~~~G~---~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf~ 87 (496)
T PRK15238 15 ILMIFTSVFGFANSPRAFYLMGY---SAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAFI 87 (496)
T ss_pred HHHHHHHHHhCCchHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHHH
Confidence 3344444455566654333 332 234455444433 44556777776432223 67778889999887764
No 88
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=38.19 E-value=4.7e+02 Score=26.99 Aligned_cols=133 Identities=12% Similarity=0.149 Sum_probs=65.3
Q ss_pred hhHHHHHHHh-hcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHhhCCChhHHHH-H
Q 010396 50 IGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVPNFIL-W 126 (511)
Q Consensus 50 lGPG~L~s~a-~idpGni~t~~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgvv-TGk~Lae~~r~~y~~~~~~~l-w 126 (511)
+.=|..++.+ ..-|+..+.. +|.+ +| +..+++.+.+++.-..-+|++.- -|+++.|..++.+||+..+.+ |
T Consensus 11 l~~~~~iG~gil~~P~~~~~~--a~~~-~w---i~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~~~~~ 84 (359)
T TIGR00912 11 LISSTMIGSGLLTLPALVSQS--AGQD-GW---ISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRLLSI 84 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHhc--cCCC-ee---HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHHHHHH
Confidence 3334444443 3455555543 2322 22 33344444444444444444432 478999999999999876543 2
Q ss_pred HHH-----HHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 010396 127 VLA-----EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGC 195 (511)
Q Consensus 127 l~~-----~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~ 195 (511)
+.. ..+....+.+|+.- ..++-..|.|...++..+ +..+..+.|.|...++...+..++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~----~~~l~~tp~~~~~l~~l~---~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 85 LFILYFFLIAAYLIRIFADFIK----TYLLPRTPIIVIIILIII---VSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCHHHHHHHHHH---HHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 222 22223333344331 112234676654433322 223344557777777766555444444
No 89
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=34.84 E-value=6.6e+02 Score=27.70 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=47.6
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhcchh
Q 010396 110 AEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVR 179 (511)
Q Consensus 110 ae~~r~~y~~~~~~~lwl~~~iaii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~yg~r 179 (511)
.+..++.+|+...+.+-+...+|+..|.++.+.+.+-=++-+++++-..++.++.+.++. +.+.|++
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~---lSn~G~~ 334 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMV---VSNLGLS 334 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH---HHHhHHH
Confidence 345677889888888888888898888888888888877777777766655555443433 3445543
No 90
>PRK03557 zinc transporter ZitB; Provisional
Probab=34.65 E-value=5.3e+02 Score=26.59 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=14.5
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 010396 176 YGVRKLEFLIAFLVFTMAG 194 (511)
Q Consensus 176 yg~r~lE~v~~~Lv~im~l 194 (511)
||+.|+|.+..++.+++.+
T Consensus 81 yG~~r~E~l~al~~~~~l~ 99 (312)
T PRK03557 81 FGWLRLTTLAAFVNAIALV 99 (312)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 8899999988776655444
No 91
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=30.25 E-value=5.1e+02 Score=25.00 Aligned_cols=84 Identities=20% Similarity=0.278 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHHH-H------HhhHHHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 010396 119 KVPNFILWVLAEIAI-V------ACDIPEVIGTAFALNML---FKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFL 188 (511)
Q Consensus 119 ~~~~~~lwl~~~iai-i------~~di~eviG~Aial~lL---fgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~L 188 (511)
.-..+.+|+++.+-. . +..++|++.+..-. ++ ||++.....++-++.+=....+.||.++.+-..+..=
T Consensus 48 ~~i~~GiW~maavi~~l~IpkpGaAl~~Ev~Aa~ve~-ll~sqfgi~tivsgfvQGlgaE~vFa~~kyr~~Sl~~~mlag 126 (192)
T COG4721 48 NEILFGIWFMAAVIAALFIPKPGAALIGEVLAALVEV-LLGSQFGIGTIVSGFVQGLGAEFVFAVTKYRYYSLPVLMLAG 126 (192)
T ss_pred cchHHHHHHHHHHHeeeeecCCcHHHHHHHHHHHHHH-HHcCCCCchHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHh
Confidence 345677888875421 1 34567775432221 22 6777665555555545444455677666666666555
Q ss_pred HHHHHHHHHHHHhhc
Q 010396 189 VFTMAGCFFAELGYA 203 (511)
Q Consensus 189 v~im~l~F~~~~~~~ 203 (511)
+..-..+|+++++..
T Consensus 127 mg~~~~sf~~eyf~~ 141 (192)
T COG4721 127 MGITLASFVYEYFKL 141 (192)
T ss_pred hchhHHHHHHHHHHH
Confidence 566677999998874
No 92
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=30.01 E-value=6.3e+02 Score=26.04 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=33.7
Q ss_pred cCCCChHHHHHHHhccchhhHHHHHHHhHhhhccCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 010396 219 LKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFL 280 (511)
Q Consensus 219 ~~~~~~~~~avaiiGatimPh~lflhSslv~~r~~~~~~~~~~~a~~~~~id~~~al~va~l 280 (511)
+.+.+.+.+.++++.-.+.-.|+-++=...+ |..+. .+-|++-+-..+|+.++.+
T Consensus 204 l~~~gplgI~~slv~v~iAa~sLllDFd~Ie-~~v~~------gaPk~~eW~~AfGL~vTLV 258 (274)
T PF12811_consen 204 LRDGGPLGIGFSLVVVGIAALSLLLDFDFIE-QGVRQ------GAPKKMEWYAAFGLLVTLV 258 (274)
T ss_pred cccCChHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHc------CCChhhHHHHHHHHHHHHH
Confidence 3334557888999988888888888755432 22111 1233455666777776643
No 93
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=27.21 E-value=5.1e+02 Score=26.44 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhc
Q 010396 141 VIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQY 176 (511)
Q Consensus 141 viG~Aial~lLfgipl~~gvlit~~~t~~lL~l~~y 176 (511)
..+++.++...|+.|.|..+++..+-.++++.++|+
T Consensus 30 ~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ 65 (301)
T PF14362_consen 30 GLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRF 65 (301)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 344556666778877777766666656666666653
No 94
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=27.01 E-value=2.6e+02 Score=27.85 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=13.9
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 010396 176 YGVRKLEFLIAFLVFTMAG 194 (511)
Q Consensus 176 yg~r~lE~v~~~Lv~im~l 194 (511)
||+.++|.+..+..++..+
T Consensus 61 fG~~r~e~l~~~~~~~~l~ 79 (284)
T PF01545_consen 61 FGYGRLEPLAALIVSILLI 79 (284)
T ss_dssp SSSTTHHHHHHHHHHHHHH
T ss_pred cchhhhhhHhhhhhhhhHh
Confidence 6889999998776554443
No 95
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=26.79 E-value=89 Score=31.04 Aligned_cols=42 Identities=19% Similarity=0.474 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhcchhhhhhhHHHhhhccCCCccchhhHHHH
Q 010396 326 SSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLT 370 (511)
Q Consensus 326 A~~lFaigLlaAg~SStitgt~agq~vm~Gfl~~~~~~~~r~lit 370 (511)
..-+|++|+|..- +.+ .+|-=.=-.|||-|.|+|||.|..+.
T Consensus 180 lA~i~AvG~FfvN--AVl-aSYNIgGTIEGfHDPKFKr~p~~via 221 (240)
T PRK00968 180 LAGILAVGIFFVN--AVL-ASYNIGGTIEGFHDPKFKRWPRAVIA 221 (240)
T ss_pred HHHHHHHHHHHHH--HHH-HhhccCceeecCCCcccccchHHHHH
Confidence 3456777777642 122 22211113699999999999997655
No 96
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=26.33 E-value=8.9e+02 Score=26.55 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=50.3
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 010396 109 LAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK-IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAF 187 (511)
Q Consensus 109 Lae~~r~~y~~~~~~~lwl~~~iaii~~di~eviG~Aial~lLfg-ipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~ 187 (511)
|.+..++.+|+...+++-+...+|+..|.++=...+|--++-+++ ++-..++.++.+.+++ +.+.|. |+++..
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~---ian~Gl---~~Ii~~ 336 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFI---IANLGL---DQIIKI 336 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH---HHHhCH---HHHHHH
Confidence 455667778988888888888888888888777777777777776 7766666665544433 345553 444444
Q ss_pred H
Q 010396 188 L 188 (511)
Q Consensus 188 L 188 (511)
.
T Consensus 337 s 337 (427)
T PF05525_consen 337 S 337 (427)
T ss_pred H
Confidence 3
No 97
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=23.52 E-value=1.1e+03 Score=26.67 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=48.0
Q ss_pred HHHHHhhhHHHHHHHh------hcCCChHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Q 010396 44 KNLFAYIGPGFLVSIA------YIDPGNFETDLQSGA-----QYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEH 112 (511)
Q Consensus 44 ~~~l~~lGPG~L~s~a------~idpGni~t~~~aGA-----~~Gy~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~ 112 (511)
.-++..+-||++.+.- -.||=.-.+-..+.. ++|+..+ ..++++.-++|.+...+-+- .
T Consensus 52 ~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~~~---~~~tllaGv~~i~~G~lRLG------~- 121 (554)
T COG0659 52 AGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLALA---FLATLLAGVFQILLGLLRLG------R- 121 (554)
T ss_pred HHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh------h-
Confidence 3467777778777653 234444333333332 4455443 55666777888877655431 1
Q ss_pred HHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 010396 113 CRNEYPKVPNFILWVLAEIAIVACDIPEVIGTA 145 (511)
Q Consensus 113 ~r~~y~~~~~~~lwl~~~iaii~~di~eviG~A 145 (511)
.-+..|++.-...-.-..+-++..++.++.|..
T Consensus 122 li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~ 154 (554)
T COG0659 122 LIRFIPRPVLIGFTAGIAILIILTQLPVLLGLA 154 (554)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 112345554333333333445566777765543
No 98
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=22.47 E-value=1e+02 Score=22.00 Aligned_cols=24 Identities=33% Similarity=0.833 Sum_probs=16.3
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHH
Q 010396 360 RLKPWLRNFLTRCLAIVPSLIVALI 384 (511)
Q Consensus 360 ~~~~~~r~litr~iaiiP~liv~~~ 384 (511)
.+++|.|+ +|.++|+.-..+++++
T Consensus 15 diqkwirn-it~cfal~vv~lvslw 38 (40)
T PF13124_consen 15 DIQKWIRN-ITFCFALLVVVLVSLW 38 (40)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 46889987 6778887654455444
No 99
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=22.15 E-value=6.7e+02 Score=23.61 Aligned_cols=75 Identities=15% Similarity=0.272 Sum_probs=38.0
Q ss_pred HHHHHHhhCchh--HHHHHHHHHHHHHHHH-HHh-cchhHHHHHHHHHHHHHHHHHHHHHh---hcCCCHHHhhcccccc
Q 010396 145 AFALNMLFKIPV--WIGVLLTGFSTLILLA-LQQ-YGVRKLEFLIAFLVFTMAGCFFAELG---YAKPEAKEVLHGLFVP 217 (511)
Q Consensus 145 Aial~lLfgipl--~~gvlit~~~t~~lL~-l~~-yg~r~lE~v~~~Lv~im~l~F~~~~~---~~~P~~~~v~~G~~vP 217 (511)
++++.++|..|. +..+.+.+...+.+-+ +.+ +|+.+ .....++.+.+.++-+.. .-.|...-.+.| ++|
T Consensus 17 ~v~Faivfnvp~~~l~~~~~~g~~g~~v~~l~~~~~g~~~---~~atfiaa~~vg~lg~~~sr~~k~p~~v~~vpa-IiP 92 (156)
T COG3610 17 TVGFAIVFNVPPRALPICGFLGALGWVVYYLLGKHFGFSI---VVATFIAAFVVGCLGNLLSRRYKTPAKVFTVPA-IIP 92 (156)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHHHHHHHhcCChhhhecch-hhh
Confidence 456667787763 4444444444444333 333 44322 233333334444444332 234555556678 789
Q ss_pred ccCCCC
Q 010396 218 QLKGNG 223 (511)
Q Consensus 218 ~~~~~~ 223 (511)
-+|+..
T Consensus 93 lVPG~~ 98 (156)
T COG3610 93 LVPGGL 98 (156)
T ss_pred cCCcHH
Confidence 999743
No 100
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=21.72 E-value=6.5e+02 Score=23.34 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=29.3
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 010396 150 MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAE 199 (511)
Q Consensus 150 lLfgipl~~gvlit~~~t~~lL~l~~yg~r~lE~v~~~Lv~im~l~F~~~ 199 (511)
-++++|....++=..+ -++.|..+.-..+++|....+++.-|.+-|+-.
T Consensus 28 ~ll~lPiPGsViGMlL-L~l~L~~~~vk~~~v~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 28 SFLPIPMPASVIGLVL-LFVLLCTKVVKLEQVESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HHcCCCCcHHHHHHHH-HHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677776655432221 122233333335788988889988998877743
No 101
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.66 E-value=4.4e+02 Score=23.53 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 010396 436 VVFLGIFGFSAMAVYLAGVAYLVLRKNKEASH 467 (511)
Q Consensus 436 ~~~~~~~~~~~~~~y~~~~~yl~~~~~~~~~~ 467 (511)
..++|++.| +-.+|-..++|.++|..+-.++
T Consensus 79 llilG~L~f-IPG~Y~~~i~y~a~rg~~Gysf 109 (115)
T PF05915_consen 79 LLILGILCF-IPGFYHTRIAYYAWRGYKGYSF 109 (115)
T ss_pred HHHHHHHHH-hccHHHHHHHHHHHcCCCCCCH
Confidence 344555443 3468999999999998765554
No 102
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.65 E-value=6.8e+02 Score=23.50 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=5.3
Q ss_pred HHHHhhCch
Q 010396 147 ALNMLFKIP 155 (511)
Q Consensus 147 al~lLfgip 155 (511)
++.++||-+
T Consensus 116 ~fa~lfgg~ 124 (193)
T PF06738_consen 116 AFALLFGGS 124 (193)
T ss_pred HHHHHHCCC
Confidence 444578754
No 103
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=21.24 E-value=1e+03 Score=25.43 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHhhhccCCCccchhhHHHH
Q 010396 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLT 370 (511)
Q Consensus 316 ~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm~Gfl~~~~~~~~r~lit 370 (511)
+.++.++|++.+.++=+.++...++++++..-++....|..+| +|.|.-.++.
T Consensus 70 ~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~--lP~wiGali~ 122 (349)
T COG3949 70 EILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG--LPYWIGALII 122 (349)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC--ccHHHHHHHH
Confidence 3678899999999999999999999999877666667766545 6777654443
No 104
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=20.13 E-value=2.7e+02 Score=27.17 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=29.3
Q ss_pred cCCChHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Q 010396 61 IDPGNFETDLQSGAQYKY-----ELLWIILVASCAALIIQSLAANLGVVTGKHLAEH 112 (511)
Q Consensus 61 idpGni~t~~~aGA~~Gy-----~LLWvlLla~i~~~~~Q~laaRlgvvTGk~Lae~ 112 (511)
.|||.+++-...+++++. ..+-.+++..++.+++-..+.++.-.-|++-.+.
T Consensus 122 aGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~v 178 (203)
T PF01914_consen 122 AGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQV 178 (203)
T ss_pred cChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHH
Confidence 466777777777777772 3333444444455555555555555555544443
Done!