Query 010396
Match_columns 511
No_of_seqs 322 out of 1595
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:54:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 99.0 3.6E-06 1.2E-10 90.7 37.8 158 25-190 10-176 (501)
2 3l1l_A Arginine/agmatine antip 98.3 0.0028 9.6E-08 65.6 35.9 40 314-353 262-301 (445)
3 4djk_A Probable glutamate/gamm 98.2 0.0084 2.9E-07 63.3 35.0 30 324-353 287-316 (511)
4 2xq2_A Sodium/glucose cotransp 98.1 0.0037 1.3E-07 68.5 32.4 114 58-174 62-180 (593)
5 3dh4_A Sodium/glucose cotransp 98.1 0.00064 2.2E-08 73.6 25.7 111 56-169 31-146 (530)
6 3gia_A Uncharacterized protein 98.1 0.014 4.9E-07 60.3 37.5 40 314-353 260-299 (444)
7 2a65_A Leutaa, Na(+):neurotran 46.2 3E+02 0.01 29.3 30.5 61 59-119 21-87 (519)
8 3h90_A Ferrous-iron efflux pum 39.2 71 0.0024 30.8 7.6 19 176-194 66-84 (283)
9 3j1z_P YIIP, cation efflux fam 28.6 1.2E+02 0.004 29.8 7.3 20 175-194 74-93 (306)
10 3j00_Z Cell division protein F 23.3 2.9E+02 0.01 22.7 7.6 10 489-498 46-55 (98)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.98 E-value=3.6e-06 Score=90.73 Aligned_cols=158 Identities=11% Similarity=0.044 Sum_probs=94.0
Q ss_pred ccccCCCCcccccCCc-chHHHHHHhhhHHHHHHHhhcCCChHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHH
Q 010396 25 PLIKNEDADQIVVPDK-TSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAAN 100 (511)
Q Consensus 25 ~~~~~~~~~~~~~~~~-~~~~~~l~~lGPG~L~s~a~idpGni~t~~~aGA~~G---y~LLWvlLla~i~~~~~Q~laaR 100 (511)
+..|+++-+++++.++ .+++.+ ..+...+-+..+++.......+ | ++-++.+++++++..++-.+.++
T Consensus 10 ~~~e~~~i~pvp~~~R~~~~~~~------~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~ 81 (501)
T 2jln_A 10 RSLLNPSNAPTRYAERSVGPFSL------AAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQS 81 (501)
T ss_dssp CBCCCSTTSCCCGGGCCBCHHHH------HHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CccccCCCCCCChhhCCCCHHHH------HHHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445555555444333 233333 2333444455555554443333 3 34456777888888888889999
Q ss_pred HHhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh----Cch-hHHHHHHHHHHHHHHHHHHh
Q 010396 101 LGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLF----KIP-VWIGVLLTGFSTLILLALQQ 175 (511)
Q Consensus 101 lgvvTGk~Lae~~r~~y~~~~~~~lwl~~~iaii~~di~eviG~Aial~lLf----gip-l~~gvlit~~~t~~lL~l~~ 175 (511)
.|.-+|.+-.+.+|..||++.+.+.-+...+..++-..-+....+.+++.++ |.+ .+.+.++..+.++++.+.+-
T Consensus 82 ~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G~ 161 (501)
T 2jln_A 82 AAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGI 161 (501)
T ss_dssp HHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTHH
T ss_pred HHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhCH
Confidence 9999999999999999998877654444434444433344444455555443 876 57777776665555544443
Q ss_pred cchhHHHHHHHHHHH
Q 010396 176 YGVRKLEFLIAFLVF 190 (511)
Q Consensus 176 yg~r~lE~v~~~Lv~ 190 (511)
...+++|++...++.
T Consensus 162 ~~i~~~~~~~~p~~~ 176 (501)
T 2jln_A 162 TFIRWMNVFASPVLL 176 (501)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666544433
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.35 E-value=0.0028 Score=65.61 Aligned_cols=40 Identities=15% Similarity=-0.040 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 314 a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
..+..+...|++...++.++.+.+.+++..+..+++...+
T Consensus 262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 301 (445)
T 3l1l_A 262 FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999988888776544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.16 E-value=0.0084 Score=63.27 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 324 SWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 324 ~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
++...++.++.+.+.+++..+..++..+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 316 (511)
T 4djk_A 287 EWTVRVISALLLLGVLAEIASWIVGPSRGM 316 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888777777665444
No 4
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.13 E-value=0.0037 Score=68.53 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=70.9
Q ss_pred HhhcCCChHHHHHHHHHhhhhHHHHHHH---HH-HHHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHHH-
Q 010396 58 IAYIDPGNFETDLQSGAQYKYELLWIIL---VA-SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIA- 132 (511)
Q Consensus 58 ~a~idpGni~t~~~aGA~~Gy~LLWvlL---la-~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~ia- 132 (511)
+.+++...+......+.++|+...|..+ ++ .++++++-..--|.+. .+..|.+++||++..+...-+...+.
T Consensus 62 at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~---~T~~e~l~~Rfg~~~~~~~ai~~l~~~ 138 (593)
T 2xq2_A 62 AANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWISLY 138 (593)
T ss_dssp GGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHccCchHHHHHHHHHHHH
Confidence 4577888888888888888987543222 22 2223333233335443 67999999999987765443222222
Q ss_pred HHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH
Q 010396 133 IVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (511)
Q Consensus 133 ii~~di~eviG~Aial~lLfgipl~~gvlit~~~t~~lL~l~ 174 (511)
.+.....+..+.+..++.++|+|.+.++++.++.+.+.-.++
T Consensus 139 ~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~G 180 (593)
T 2xq2_A 139 IFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYG 180 (593)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhc
Confidence 222233455677888999999999998887776544443333
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.11 E-value=0.00064 Score=73.56 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=70.2
Q ss_pred HHHhhcCCChHHHHHHHHHhhhhHHHH---HHHHHH-HHHHHHHHHHHHHHhhcCCCHHHHHHhhCCChhHHHHHHHHHH
Q 010396 56 VSIAYIDPGNFETDLQSGAQYKYELLW---IILVAS-CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEI 131 (511)
Q Consensus 56 ~s~a~idpGni~t~~~aGA~~Gy~LLW---vlLla~-i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwl~~~i 131 (511)
+.+.++....+......+.++|+.-.| ...++. ++++++-...-|.+. .+..|..++||++..+...-+...+
T Consensus 31 ~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~---~T~~e~l~~Rfg~~~~~~~a~~~l~ 107 (530)
T 3dh4_A 31 LIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWIS 107 (530)
T ss_dssp HHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ccHHHHHHHHcCcHHHHHHHHHHHH
Confidence 355678888888888889999987543 222222 222333233334443 6899999999998776654322222
Q ss_pred HHHH-hhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 010396 132 AIVA-CDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLI 169 (511)
Q Consensus 132 aii~-~di~eviG~Aial~lLfgipl~~gvlit~~~t~~ 169 (511)
..+. ....+..+.+..++.++|+|.+.++++.++.+.+
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~ 146 (530)
T 3dh4_A 108 LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALV 146 (530)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1122 2234455677888999999999998887765433
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.10 E-value=0.014 Score=60.34 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhcchhhhhhhHHHh
Q 010396 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (511)
Q Consensus 314 a~~~L~~~lG~~A~~lFaigLlaAg~SStitgt~agq~vm 353 (511)
..+..++..|++...++.++.+.+.+++..+..+++.+.+
T Consensus 260 ~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l 299 (444)
T 3gia_A 260 LAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVA 299 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999888888765444
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=46.16 E-value=3e+02 Score=29.30 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=36.9
Q ss_pred hhcCCChHHHH-----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHhhCCC
Q 010396 59 AYIDPGNFETD-----LQSGAQYKYELLWIILVASCAALIIQSLAANLGV-VTGKHLAEHCRNEYPK 119 (511)
Q Consensus 59 a~idpGni~t~-----~~aGA~~Gy~LLWvlLla~i~~~~~Q~laaRlgv-vTGk~Lae~~r~~y~~ 119 (511)
..+|-||+=-- -..|..|=---+-.+++.-+-.+.++..-.|++- .++++-.+..|+--|+
T Consensus 21 ~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~ 87 (519)
T 2a65_A 21 NAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87 (519)
T ss_dssp HHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCS
T ss_pred HHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCC
Confidence 36999998433 3333333222233334444455566666677666 6888999988877665
No 8
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=39.16 E-value=71 Score=30.82 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=14.5
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 010396 176 YGVRKLEFLIAFLVFTMAG 194 (511)
Q Consensus 176 yg~r~lE~v~~~Lv~im~l 194 (511)
||+.|.|.+..++.+++.+
T Consensus 66 yG~~r~E~l~~l~~~~~l~ 84 (283)
T 3h90_A 66 FGHGKAESLAALAQSMFIS 84 (283)
T ss_dssp SCSTTHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHH
Confidence 7899999987776665544
No 9
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=28.57 E-value=1.2e+02 Score=29.79 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=14.1
Q ss_pred hcchhHHHHHHHHHHHHHHH
Q 010396 175 QYGVRKLEFLIAFLVFTMAG 194 (511)
Q Consensus 175 ~yg~r~lE~v~~~Lv~im~l 194 (511)
.||++|.|.+..++.+++.+
T Consensus 74 pyG~~R~E~l~al~~~~~l~ 93 (306)
T 3j1z_P 74 RYGHGKAEPLAALAQSAFIM 93 (306)
T ss_dssp SSCCTTHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHH
Confidence 37899999987766554433
No 10
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=23.26 E-value=2.9e+02 Score=22.67 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=3.9
Q ss_pred CCCCcccccc
Q 010396 489 YSLPREDIAS 498 (511)
Q Consensus 489 ~~~~~~~~~~ 498 (511)
.+++++|+.+
T Consensus 46 ~~vs~~~Ir~ 55 (98)
T 3j00_Z 46 HYTRNDDIRQ 55 (98)
T ss_dssp CSSCSSSSCC
T ss_pred eecCHHHHHH
Confidence 3344444433
Done!