BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010399
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 222/562 (39%), Positives = 316/562 (56%), Gaps = 77/562 (13%)
Query: 9 SSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS--N 66
SS S+ D R +++ PSIWGD F+N +K + E EKR + LK E+ K++V+
Sbjct: 11 SSPLSSNKDEMRPKADFQPSIWGDLFLNCP--DKNIDAETEKRHQQLKEEVRKMIVAPMA 68
Query: 67 NTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVA 126
N+ K +A ++ +QRLGV+YHF EI++ L+ IY + N D NDLY +
Sbjct: 69 NSTQK-----LAFIDSVQRLGVSYHFTKEIEDELENIYHN--------NNDAENDLYTTS 115
Query: 127 LRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEAC 186
+RFRLLR+HGY VS D+F KF+DE+G FK+ +T+D +GLL LY+ASYLRV GE+IL+EA
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAI 175
Query: 187 EFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILEL 246
F PL ++V H+L+ + RG+PR+EAR Y+S+Y+ D + N+ +LE
Sbjct: 176 SFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQ-DIESHNKALLEF 234
Query: 247 AKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANELPKY---- 296
AK+DFN+LQ LHR ELSEI RWWKD+DF KLP+ARDR W + P+Y
Sbjct: 235 AKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW-ISGVYFEPQYSLGR 293
Query: 297 -MQVCYFALLDVVKEMEDKLVNKEPLC------------CM----YYAKEAIKGLV---- 335
M A+ +V + D E L C+ Y K + K L+
Sbjct: 294 KMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYE 353
Query: 336 --------------------------KAYFVEAKWFHAKYVPTFEECVENSTMSSGYPML 369
++Y VEAKW Y P+FEE N+ + GY ML
Sbjct: 354 EMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAML 413
Query: 370 AVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECY 429
A+ + VG+ D+ +T WA S PKII++S++I R DDV +K + R D S++ECY
Sbjct: 414 AITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECY 472
Query: 430 VQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDG 489
+++YGV+ +EA + VE W ++N+E P P + L SLNLAR+M VLY+ GDG
Sbjct: 473 MEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDG 532
Query: 490 YTNSTGKTKDRIASLLVDPLPM 511
YT K I SLL++P+ +
Sbjct: 533 YTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 200/558 (35%), Positives = 304/558 (54%), Gaps = 84/558 (15%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY + E LK + +L++ +
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----QEIEALKEQTRSMLLATG---RK 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI E L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDIIERLGISYHFEKEIDEILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANELPKYMQ------- 298
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR W + E P+Y Q
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFE-PQYSQARVMLVK 292
Query: 299 --------------------------------------------VCYFALLDVVKEMEDK 314
+ Y A+LD+ K+ E +
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 352
Query: 315 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEAL 374
L + + +A E +K +V+ Y VE+ WF Y P E + N+ ++ Y LA +
Sbjct: 353 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 412
Query: 375 VGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG 434
+G++ + T++ +W PKI+ +S +I R+ DD TY+VE+ RG + +EC ++ YG
Sbjct: 413 LGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 470
Query: 435 VSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNS 493
+S +EA K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+
Sbjct: 471 ISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 494 TGKTKDRIASLLVDPLPM 511
K I +LLVD + +
Sbjct: 531 EKVLKPHIINLLVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 200/558 (35%), Positives = 304/558 (54%), Gaps = 84/558 (15%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY + E LK + +L++ +
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----QEIEALKEQTRSMLLATG---RK 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI E L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDIIERLGISYHFEKEIDEILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANELPKYMQ------- 298
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR W + E P+Y Q
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFE-PQYSQARVMLVK 292
Query: 299 --------------------------------------------VCYFALLDVVKEMEDK 314
+ Y A+LD+ K+ E +
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 352
Query: 315 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEAL 374
L + + +A E +K +V+ Y VE+ WF Y P E + N+ ++ Y LA +
Sbjct: 353 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 412
Query: 375 VGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG 434
+G++ + T++ +W PKI+ +S +I R+ DD TY+VE+ RG + +EC ++ YG
Sbjct: 413 LGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 470
Query: 435 VSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNS 493
+S +EA K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+
Sbjct: 471 ISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 494 TGKTKDRIASLLVDPLPM 511
K I +LLVD + +
Sbjct: 531 EEVLKPHIINLLVDSIKI 548
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 200/558 (35%), Positives = 303/558 (54%), Gaps = 84/558 (15%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S EKY K E LK + +L++
Sbjct: 14 EIVRPVADFSPSLWGDQFLSFSIKNQVAEKYA-----KEIEALKEQTRNMLLATGMK--- 65
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 66 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 116
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 117 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 176
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 177 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 235
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANELPKYMQ------- 298
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR W + E P+Y Q
Sbjct: 236 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFE-PQYSQARVMLVK 294
Query: 299 --------------------------------------------VCYFALLDVVKEMEDK 314
+ Y A+LD+ K+ E +
Sbjct: 295 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 354
Query: 315 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEAL 374
L + + +A E +K +V+ Y VE+ WF Y P E + N+ ++ Y +LA +
Sbjct: 355 LSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSY 414
Query: 375 VGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG 434
+G++ + T++ +W PKI+ +S +I R+ DD TY+VE+ RG + +EC ++ YG
Sbjct: 415 LGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 472
Query: 435 VSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNS 493
+S +EA K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+
Sbjct: 473 ISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHP 532
Query: 494 TGKTKDRIASLLVDPLPM 511
K I +LLVD + +
Sbjct: 533 EKVLKPHIINLLVDSIKI 550
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 325 bits (833), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 200/558 (35%), Positives = 303/558 (54%), Gaps = 84/558 (15%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY K E LK + +L++
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----KEIEALKEQTRNMLLATGMK--- 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANELPKYMQ------- 298
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR W + E P+Y Q
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFE-PQYSQARVMLVK 292
Query: 299 --------------------------------------------VCYFALLDVVKEMEDK 314
+ Y A+LD+ K+ E +
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 352
Query: 315 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEAL 374
L + + +A E +K +V+ Y VE+ WF Y P E + N+ ++ Y LA +
Sbjct: 353 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 412
Query: 375 VGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG 434
+G++ + T++ +W PKI+ +S +I R+ DD TY+VE+ RG + +EC ++ YG
Sbjct: 413 LGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 470
Query: 435 VSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNS 493
+S +EA K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+
Sbjct: 471 ISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 494 TGKTKDRIASLLVDPLPM 511
K I +LLVD + +
Sbjct: 531 EKVLKPHIINLLVDSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 325 bits (832), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 198/557 (35%), Positives = 302/557 (54%), Gaps = 82/557 (14%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY K E LK + +L++
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----KEIEALKEQTRNMLLATGMK--- 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDR-----WEVVAANELPKYMQ-------- 298
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR + + P+Y Q
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKT 293
Query: 299 -------------------------------------------VCYFALLDVVKEMEDKL 315
+ Y A+LD+ K+ E +L
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKEL 353
Query: 316 VNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALV 375
+ + +A E +K +V+ Y VE+ WF Y P E + N+ ++ Y LA + +
Sbjct: 354 SSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL 413
Query: 376 GLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGV 435
G++ + T++ +W PKI+ +S +I R+ DD TY+VE+ RG + +EC ++ YG+
Sbjct: 414 GMK--SATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGI 471
Query: 436 SEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNST 494
S +EA K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+
Sbjct: 472 STKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPE 531
Query: 495 GKTKDRIASLLVDPLPM 511
K I +LLVD + +
Sbjct: 532 EVLKPHIINLLVDSIKI 548
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 325 bits (832), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 200/558 (35%), Positives = 302/558 (54%), Gaps = 84/558 (15%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S EKY K E LK + +L++
Sbjct: 14 EIVRPVADFSPSLWGDQFLSFSIKNQVAEKYA-----KEIEALKEQTRNMLLATGMK--- 65
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 66 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 116
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 117 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 176
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 177 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 235
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANELPKYMQ------- 298
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR W + E P+Y Q
Sbjct: 236 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFE-PQYSQARVMLVK 294
Query: 299 --------------------------------------------VCYFALLDVVKEMEDK 314
+ Y A+LD+ K+ E +
Sbjct: 295 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 354
Query: 315 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEAL 374
L + + +A E +K +V+ Y VE+ WF Y P E + N+ ++ Y LA +
Sbjct: 355 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 414
Query: 375 VGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG 434
+G++ + T++ +W PKI+ +S +I R+ DD TY+VE+ RG + +EC ++ YG
Sbjct: 415 LGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 472
Query: 435 VSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNS 493
+S +EA K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+
Sbjct: 473 ISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP 532
Query: 494 TGKTKDRIASLLVDPLPM 511
K I +LLVD + +
Sbjct: 533 EKVLKPHIINLLVDSIKI 550
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 324 bits (830), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 200/555 (36%), Positives = 300/555 (54%), Gaps = 84/555 (15%)
Query: 20 RRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEE 75
R +++ PS+WGD F++ S EKY K E LK + +L++ L +
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYA-----KEIEALKEQTRNMLLATGMK---LAD 53
Query: 76 IVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQH 135
+ +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLLRQH
Sbjct: 54 TLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLLRQH 104
Query: 136 GYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXX 195
G+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 105 GFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 164
Query: 196 XXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLL 254
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLL
Sbjct: 165 AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLL 223
Query: 255 QALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANELPKYMQ---------- 298
Q LH+ EL+++SRWWKD+DF T LP+ARDR W + E P+Y Q
Sbjct: 224 QMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFE-PQYSQARVMLVKTIS 282
Query: 299 -----------------------------------------VCYFALLDVVKEMEDKLVN 317
+ Y A+LD+ K+ E +L +
Sbjct: 283 MISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 342
Query: 318 KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL 377
+ +A E +K +V+ Y VE+ WF Y P E + N+ ++ Y LA + +G+
Sbjct: 343 AGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGM 402
Query: 378 EDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSE 437
+ + T++ +W PKI+ +S +I R+ DD TY+VE+ RG + +EC ++ YG+S
Sbjct: 403 K--SATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIST 460
Query: 438 EEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSTGK 496
+EA K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+
Sbjct: 461 KEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKV 520
Query: 497 TKDRIASLLVDPLPM 511
K I +LLVD + +
Sbjct: 521 LKPHIINLLVDSIKI 535
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 323 bits (829), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 200/558 (35%), Positives = 303/558 (54%), Gaps = 84/558 (15%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY K E LK + +L++
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----KEIEALKEQTRNMLLATGMK--- 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANELPKYMQ------- 298
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR W + E P+Y Q
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFE-PQYSQARVMLVK 292
Query: 299 --------------------------------------------VCYFALLDVVKEMEDK 314
+ Y A+LD+ K+ E +
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 352
Query: 315 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEAL 374
L + + +A E +K +V+ Y VE+ WF Y P E + N+ ++ Y LA +
Sbjct: 353 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 412
Query: 375 VGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG 434
+G++ + T++ +W PKI+ +S +I R+ DD TY+VE+ RG + +EC ++ YG
Sbjct: 413 LGMK--SATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYG 470
Query: 435 VSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNS 493
+S +EA K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+
Sbjct: 471 ISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 494 TGKTKDRIASLLVDPLPM 511
K I +LLVD + +
Sbjct: 531 EEVLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 323 bits (828), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 198/557 (35%), Positives = 302/557 (54%), Gaps = 82/557 (14%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY K E LK + +L++
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----KEIEALKEQTRNMLLATGMK--- 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDR-----WEVVAANELPKYMQ-------- 298
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR + + P+Y Q
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKT 293
Query: 299 -------------------------------------------VCYFALLDVVKEMEDKL 315
+ Y A+LD+ K+ E +L
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKEL 353
Query: 316 VNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALV 375
+ + +A E +K +V+ Y VE+ WF Y P E + N+ ++ Y LA + +
Sbjct: 354 SSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL 413
Query: 376 GLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGV 435
G++ + T++ +W PKI+ +S +I R+ DD TY+VE+ RG + +EC ++ YG+
Sbjct: 414 GMK--SATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGI 471
Query: 436 SEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNST 494
S +EA K + M E W +INE + P ++L P LNLAR++ V Y N DGYT+
Sbjct: 472 STKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPE 531
Query: 495 GKTKDRIASLLVDPLPM 511
K I +LLVD + +
Sbjct: 532 EVLKPHIINLLVDSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 251 bits (642), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 174/548 (31%), Positives = 270/548 (49%), Gaps = 70/548 (12%)
Query: 20 RRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAI 79
RRS++Y P+ W F+ +SS+ + + + + L+AE+ + + + + TL E++
Sbjct: 15 RRSADYEPNSWDYDFL-LSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELI-- 71
Query: 80 VNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKV 139
+ +QRLG+ Y FE++I+ AL S G D L+ AL FRLLRQHG++V
Sbjct: 72 -DNVQRLGLGYRFESDIRRALDRFVSS---GGFDGV--TKTSLHATALSFRLLRQHGFEV 125
Query: 140 SADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXX 199
S + F F+D+ G F L D K +L LYEAS+L ++GENIL+EA F
Sbjct: 126 SQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEE 185
Query: 200 XXTP-LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALH 258
L +QV H+LE+PLHR RLEA I Y N+++LELA LD+N++Q+++
Sbjct: 186 KIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDA-NQVLLELAILDYNMIQSVY 244
Query: 259 RIELSEISRWWKDIDFATKLPFARDR------WEVVAA---------------------- 290
+ +L E SRWW+ + ATKL FARDR W V A
Sbjct: 245 QRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTII 304
Query: 291 ----------------------------NELPKYMQVCYFALLDVVKEME-DKLVNKEPL 321
N+LP YM++C+ AL + + E+ D L +K
Sbjct: 305 DDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGEN 364
Query: 322 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMA 381
Y K A L A+ EAKW + K PTF++ N+ SS P+ + A +
Sbjct: 365 ILPYLTK-AWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVV-QN 422
Query: 382 ITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEAC 441
I K ++ II S I RL +D+ + E RG+ +SV CY++ G+SEE A
Sbjct: 423 IKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELAT 482
Query: 442 NKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRI 501
+ +++ W +N+E + ++ ++NLAR Y NGD +T+ T+ R+
Sbjct: 483 ESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRV 542
Query: 502 ASLLVDPL 509
S++ +P+
Sbjct: 543 LSVITEPI 550
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 234 bits (597), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 175/555 (31%), Positives = 261/555 (47%), Gaps = 79/555 (14%)
Query: 20 RRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAI 79
RRS NY P++W ++I S N YT R L ++ LL + LE +
Sbjct: 6 RRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLE----L 60
Query: 80 VNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN-----DLYIVALRFRLLRQ 134
++ L+ LG++ F++EIKE L IY+ H C HNN DLY AL FRLLRQ
Sbjct: 61 IHDLKYLGLSDFFQDEIKEILGVIYNEH---KCF----HNNEVEKMDLYFTALGFRLLRQ 113
Query: 135 HGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXX 193
HG+ +S D+F F++EKG +FKA L D KG+L LYEAS+L +GE+ LE A EF
Sbjct: 114 HGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCL 173
Query: 194 XXXXXXXXTP----LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKL 249
L+ + HSL++PLH + +EAR +I Y A N LI ELAKL
Sbjct: 174 QKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAY-ARRPDMNPLIFELAKL 232
Query: 250 DFNLLQALHRIELSEISRWWKDIDFATKLPFARDR------WEVVA----ANELPKYMQV 299
+FN++QA H+ EL ++SRWW + F KLPF RDR W V + + M
Sbjct: 233 NFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAA 292
Query: 300 CYFALLDVVKEMED--------------------KLVNKEP----LC---CMYYAKEAIK 332
L V+ ++ D + + + P LC Y +A
Sbjct: 293 TIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAY 352
Query: 333 GLVKAY--------------FVEAKWFHAK-----YVPTFEECVENSTMSSGYPMLAVEA 373
++K + VEA + AK Y P+ +E + + +S P +
Sbjct: 353 DILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPT 412
Query: 374 LVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY 433
+ + +D I+ + +I RL DD+ T E RGD P +++CY+++
Sbjct: 413 YFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKET 472
Query: 434 GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNS 493
SEEEA +K ++ W ++N I P + + N+ R+ +Y +GDG+
Sbjct: 473 NASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQ 532
Query: 494 TGKTKDRIASLLVDP 508
KT + IA LL +P
Sbjct: 533 HSKTYEHIAGLLFEP 547
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 152/523 (29%), Positives = 244/523 (46%), Gaps = 87/523 (16%)
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN---DLYIVALRF 129
L E + IV+ + RLG+ HFE EIKEAL +Y H N + + N DL AL F
Sbjct: 298 LLERLLIVDNIVRLGIYRHFEKEIKEALDYVY-RHWNER-GIGWGRLNPIADLETTALGF 355
Query: 130 RLLRQHGYKVSADIFKKFRDEKGEF---KAMLTNDAKGLLCLYEASYLRVQGENILEEAC 186
RLLR H Y VS IF F+D G+F D +L LY AS L GENIL+EA
Sbjct: 356 RLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAK 415
Query: 187 EFXXXXXXXXXXXXXTP--------LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNS- 237
F T L +++++L+ H +PR+EA++Y +Y D +
Sbjct: 416 SFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYAR 475
Query: 238 ----------TRNELILELAKLDFNLLQALHRIELSEISRWWKD-----IDFATKLPF-- 280
NE LEL KLDFN++Q++H+ E+ ++ W++D FA + P
Sbjct: 476 IAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERPLEF 535
Query: 281 ------------------------------------------------ARDRWEVVAANE 292
A RW++
Sbjct: 536 YFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTEN 595
Query: 293 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 352
LP YM++CY D+V E+ + ++ + + ++ + + Y+ EA+W A+YVPT
Sbjct: 596 LPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPT 655
Query: 353 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPK---IIRSSSLIARLDDD 409
+E ++N S G +L + ++ ++ +++ AL+ + P + +SLI+RL DD
Sbjct: 656 LDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALE-KVDYPGRRVLTELNSLISRLADD 714
Query: 410 VHTYKVEQERGDAPSSVECYVQQYG-VSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQ 468
TYK E+ RG+ SS+ECY++ + +EEEA + I ++E + E P+ P
Sbjct: 715 TKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFA 774
Query: 469 WLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 511
R+ +V++++GDG+ S + KD I L++PLP+
Sbjct: 775 CKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 6 SVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLL 63
S L S+ + + RR++N HP++WG ++ S Y ++ +R E L +EI+ +L
Sbjct: 11 SSLVCDLSSTSGLIRRTANPHPNVWGYDLVH-SLKSPYIDSSYRERAEVLVSEIKAML 67
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 152/514 (29%), Positives = 237/514 (46%), Gaps = 90/514 (17%)
Query: 80 VNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN---DLYIVALRFRLLRQHG 136
V+ ++RLG+ HF+ EIKEAL +Y SH + + + N D+ A+ R+LR HG
Sbjct: 277 VDTVERLGIDRHFKEEIKEALDYVY-SHWDER-GIGWARENPVPDIDDTAMGLRILRLHG 334
Query: 137 YKVSADIFKKFRDEKGEFKAMLTNDAKG---LLCLYEASYLRVQGENILEEA--C----- 186
Y VS+D+ K FRDE GEF L +G +L + S++ GE I+EEA C
Sbjct: 335 YNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYL 394
Query: 187 -EFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNS-------- 237
+ +VE++L+ P H+ MPRLEAR YI Y D+
Sbjct: 395 RNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYM 454
Query: 238 ---TRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR--------WE 286
NE LELAKLDFN +Q++H+ EL ++ RWWK F T L F R+R
Sbjct: 455 MPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIYFSPAS 513
Query: 287 VVAANELPK----YMQVCYFALL------------------DVVKEMEDKLVNKEP---- 320
+ E K Y + F ++ + VK + LV++ P
Sbjct: 514 FIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMK 573
Query: 321 LC----------------------CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVE 358
+C + Y + K ++AY EA+W AKYVP+F E +E
Sbjct: 574 ICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIE 633
Query: 359 NSTMSSGY-PMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQ 417
N+++S ++ + AL E +T L + ++ L RL +D TY+ E+
Sbjct: 634 NASVSIALGTVVLISALFTGE--VLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAER 691
Query: 418 ERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNL 476
+G+ S+++CY++ + +SEEEA + ++E +N E + P + L
Sbjct: 692 GQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNKIPDIYKRL-VFET 750
Query: 477 ARMMVVLYQNGDGYTNSTG-KTKDRIASLLVDPL 509
AR+M + Y GDG T S + K+ + + L P+
Sbjct: 751 ARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/512 (27%), Positives = 229/512 (44%), Gaps = 78/512 (15%)
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDH-NNDLYIVALRFRL 131
L E +++V+ ++ LG+ HF+ EIK AL +Y D DL AL R
Sbjct: 246 LLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRT 305
Query: 132 LRQHGYKVSADIFKKFRDEKGEFKAMLTN---DAKGLLCLYEASYLRVQGENILEEACEF 188
LR HGY VS+D+ F+DE G F + + + ++ L+ AS L E +++A +F
Sbjct: 306 LRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKF 365
Query: 189 XX---XXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADN--------- 236
T L ++E+ +E P H +PRLEAR YI Y+ DN
Sbjct: 366 AEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYD-DNYVWQRKTLY 424
Query: 237 ---STRNELILELAKLDFNLLQALHRIELSEISRWWK-----DIDF-------------- 274
S N LELAKLDFN++Q+LH+ EL ++RWWK DI+F
Sbjct: 425 RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYFSSAT 484
Query: 275 ------ATKLPFAR----------------------------DRWEVVAANELPKYMQVC 300
AT++ F + RW+ +E+P+ MQ C
Sbjct: 485 FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTC 544
Query: 301 YFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENS 360
+ +++E+ + +V + + + ++ + Y E +W A Y+PTFEE ++
Sbjct: 545 FKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTY 604
Query: 361 TMSSGYPMLAVEALVGLEDMAITKRALDWAISVPK-IIRSSSLIARLDDDVHTYKVEQER 419
+S G ++ ++ + ++ K + + P + SL RL +D TY+ E+ R
Sbjct: 605 AISVGLGPCTLQPILLMGEL--VKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKAR 662
Query: 420 GDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLA 477
G S + CY++ G +EE+A I +V+ + E P N P+ NL
Sbjct: 663 GQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLR 722
Query: 478 RMMVVLYQNGDGYTNSTGKTKDRIASLLVDPL 509
+ + Y+ DGY + + KD I + +DP+
Sbjct: 723 LCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 754
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 153/271 (56%), Gaps = 17/271 (6%)
Query: 20 RRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETL---KAEIEKLLVSNNTAWKTLEEI 76
RRS NY+PS W +FI ++ + V + E + K E+EK + LE
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEK----ETDQIRQLE-- 55
Query: 77 VAIVNQLQRLGVAYHFENEIKEALQTIY-DSHVNGNCDVNYDHNNDLYIVALRFRLLRQH 135
+++ LQR+G++ HF+NE KE L +IY D H N DLY +L FRLLR+H
Sbjct: 56 --LIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPK--EERDLYSTSLAFRLLREH 111
Query: 136 GYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXX 195
G++V+ ++F F++E+GEFK L++D +GLL LYEAS+L +GE LE A EF
Sbjct: 112 GFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEE 171
Query: 196 XXXXXXT--PLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNL 253
L+ ++ +SL+IPLH + R A +I Y N ++LELA LD N+
Sbjct: 172 KVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRK-RPDMNPVVLELAILDLNI 230
Query: 254 LQALHRIELSEISRWWKDIDFATKLPFARDR 284
+QA + EL E RWW++ F KLPFARDR
Sbjct: 231 VQAQFQEELKESFRWWRNTGFVEKLPFARDR 261
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 117/227 (51%), Gaps = 2/227 (0%)
Query: 284 RWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAK 343
RW++ + ++LP YMQ+C+ AL + V + ++ ++ + + Y +++ L Y VEA+
Sbjct: 317 RWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEAR 376
Query: 344 WFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLI 403
WF+ + P+ EE +ENS S P + + D + TK +D ++R SS +
Sbjct: 377 WFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTD-SFTKETVDSLYKYHDLVRWSSFV 435
Query: 404 ARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPN 463
RL DD+ T E RGD P S++CY+ Y SE EA +K ++ W +N E +
Sbjct: 436 LRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKD 495
Query: 464 HP-PLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPL 509
P ++ +++L RM ++Y NGDG+ ++ L +P
Sbjct: 496 SPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPF 542
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 141/266 (53%), Gaps = 15/266 (5%)
Query: 21 RSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIV 80
R+ Y P++W I S + +Y + R + +++ +L + + LE ++
Sbjct: 36 RTGGYQPTLWDFSTIQ-SFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLE----LI 90
Query: 81 NQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVS 140
+ L+RLG++ HFE EI E L + Y + N D DLY ALRFRLLRQ+ + VS
Sbjct: 91 DDLRRLGISCHFEREIVEILNSKY--YTNNEID-----ERDLYSTALRFRLLRQYDFSVS 143
Query: 141 ADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXX 199
++F F++ KG +FK L +D +GLL LYEAS+L QGE L A +F
Sbjct: 144 QEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLV 203
Query: 200 XX-TPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALH 258
L+ +E +LE+P H + AR +I Y+ N +LELAKLDFN++QA
Sbjct: 204 DKDINLLSSIERALELPTHWRVQMPNARSFIDAYKR-RPDMNPTVLELAKLDFNMVQAQF 262
Query: 259 RIELSEISRWWKDIDFATKLPFARDR 284
+ EL E SRWW +LPF RDR
Sbjct: 263 QQELKEASRWWNSTGLVHELPFVRDR 288
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 281 ARDRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 340
A RW++ + +LP YMQ+CY AL + V EM + + Y ++ GL+++Y +
Sbjct: 341 AIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLI 400
Query: 341 EAKWFHAKYVPTFEECVENSTMS-SGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRS 399
EAKW++ + P+ EE ++NS +S G P+L+ L D +I + A + I+R+
Sbjct: 401 EAKWYYKGHKPSLEEYMKNSWISIGGIPILS-HLFFRLTD-SIEEEAAESMHKYHDIVRA 458
Query: 400 SSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 459
S I RL DD+ T E ERGD P SV+CY+ + SEEEA ++ +++ W +N+E+
Sbjct: 459 SCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEM 518
Query: 460 QDPNHPPLQWLLPSLNLARMMVVLYQN-GDGY 490
+ ++ S NLARM +YQ+ DG+
Sbjct: 519 MTSSFSKY-FVEVSANLARMAQWIYQHESDGF 549
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 112/223 (50%), Gaps = 25/223 (11%)
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHV-NGNCDVNYDHNNDLYIVALRFRL 131
L E + IV++LQRLG++ +FE EIKE L ++ NG C H D+ A+ FRL
Sbjct: 245 LFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRL 304
Query: 132 LRQHGYKVSADIFKKFRDEKGEFKAML--TNDA-KGLLCLYEASYLRVQGENILEEACEF 188
LRQHGY+VSAD+FK F E GEF + +N A G+ LY AS L E IL+ A EF
Sbjct: 305 LRQHGYQVSADVFKNFEKE-GEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEF 363
Query: 189 XXXXXXXXXXXX--------XTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNS--- 237
L ++ +LEIP + +PR+E R YI Y +N
Sbjct: 364 SYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWI 423
Query: 238 ---------TRNELILELAKLDFNLLQALHRIELSEISRWWKD 271
N LELAK D+N QA H++E +W+++
Sbjct: 424 GKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE 466
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 33 HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHF 92
+++N SSNE + L +E+L VSNN L E+ A+ +L+RL +++
Sbjct: 300 YYLNASSNEI-------RSLCDLPPSLEELNVSNNK----LIELPALPPRLERLIASFNH 348
Query: 93 ENEIKEALQTIYDSHVNGN 111
E+ E Q + HV N
Sbjct: 349 LAEVPELPQNLKQLHVEYN 367
>pdb|4AFL|A Chain A, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|B Chain B, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|C Chain C, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|D Chain D, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|E Chain E, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|F Chain F, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins
Length = 104
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 47 EVEKRFETLKAEIEKLLVSNNTAWKTL--EEIVAIVNQLQR-LGVAYHF-ENEIKEALQT 102
++++R E LKAEI+KL ++ ++L EE +A++ Q+Q G F +++++ A QT
Sbjct: 29 DLDQRTEDLKAEIDKLATEYXSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAXQT 88
Query: 103 --IYDSHV 108
D H+
Sbjct: 89 YEXVDKHI 96
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 2 RDLKSVLSSKESTKADVNRRSSNYHP 27
+ LKS LSSK++ KADV+ S++Y+
Sbjct: 13 KQLKSFLSSKDTFKADVHGHSASYYA 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,659,361
Number of Sequences: 62578
Number of extensions: 579004
Number of successful extensions: 1797
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1674
Number of HSP's gapped (non-prelim): 45
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)