Query 010399
Match_columns 511
No_of_seqs 237 out of 908
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 00:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 1E-138 3E-143 1136.9 49.1 477 20-508 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 7E-122 2E-126 1027.0 41.2 426 72-511 269-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 9.3E-93 2E-97 789.9 37.8 392 72-510 309-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 6.2E-57 1.3E-61 427.4 14.6 175 30-212 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 1.2E-36 2.7E-41 302.6 17.2 213 243-456 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 6.7E-34 1.4E-38 285.0 24.0 226 257-484 1-284 (284)
7 PLN02150 terpene synthase/cycl 100.0 1.9E-32 4E-37 234.5 10.3 95 417-511 1-96 (96)
8 cd00687 Terpene_cyclase_nonpla 99.9 7E-23 1.5E-27 208.5 14.2 160 294-459 105-265 (303)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.6 1.5E-14 3.2E-19 138.3 11.5 180 290-478 51-243 (243)
10 cd00686 Terpene_cyclase_cis_tr 95.8 0.073 1.6E-06 55.4 10.9 162 290-462 103-279 (357)
11 PF06330 TRI5: Trichodiene syn 94.1 0.21 4.5E-06 52.8 8.6 128 322-458 145-276 (376)
12 cd00867 Trans_IPPS Trans-Isopr 92.2 2.6 5.7E-05 41.0 12.9 118 323-457 86-214 (236)
13 TIGR02749 prenyl_cyano solanes 76.4 67 0.0014 33.5 14.2 86 324-414 135-220 (322)
14 cd00685 Trans_IPPS_HT Trans-Is 72.7 33 0.00072 34.3 10.5 120 323-457 109-239 (259)
15 PLN02890 geranyl diphosphate s 70.9 65 0.0014 35.1 12.8 88 323-415 228-315 (422)
16 PLN02857 octaprenyl-diphosphat 66.4 58 0.0013 35.4 11.3 86 324-414 229-314 (416)
17 TIGR02748 GerC3_HepT heptapren 62.6 1.7E+02 0.0036 30.5 13.5 82 326-414 133-216 (319)
18 PF00494 SQS_PSY: Squalene/phy 61.4 1.8E+02 0.0038 28.9 14.9 113 348-472 107-233 (267)
19 COG0142 IspA Geranylgeranyl py 58.9 1.8E+02 0.0039 30.3 13.0 107 323-435 135-251 (322)
20 TIGR03465 HpnD squalene syntha 57.3 1.6E+02 0.0034 29.6 12.0 132 329-477 85-227 (266)
21 KOG1719 Dual specificity phosp 57.1 8.6 0.00019 36.2 2.5 30 418-447 119-149 (183)
22 COG3707 AmiR Response regulato 52.6 12 0.00025 36.4 2.7 47 403-449 127-174 (194)
23 PF03861 ANTAR: ANTAR domain; 51.7 14 0.00031 28.2 2.6 30 421-450 14-43 (56)
24 cd00683 Trans_IPPS_HH Trans-Is 49.5 1.7E+02 0.0037 29.2 10.8 134 329-478 93-237 (265)
25 PF13608 Potyvirid-P3: Protein 49.1 1.4E+02 0.0031 32.7 10.7 74 205-282 90-168 (445)
26 PRK10888 octaprenyl diphosphat 42.5 4.2E+02 0.009 27.6 13.9 86 324-415 132-218 (323)
27 CHL00151 preA prenyl transfera 42.2 3E+02 0.0066 28.6 11.6 87 323-415 135-222 (323)
28 PF11848 DUF3368: Domain of un 32.4 33 0.00072 25.5 1.9 24 125-148 21-44 (48)
29 PRK04132 replication factor C 31.5 2.8E+02 0.0061 33.1 10.1 140 277-446 365-510 (846)
30 PF12368 DUF3650: Protein of u 30.5 39 0.00084 22.7 1.7 18 428-445 9-26 (28)
31 PF13060 DUF3921: Protein of u 29.2 2.4E+02 0.0051 21.4 5.8 44 297-342 6-49 (58)
32 smart00463 SMR Small MutS-rela 28.7 67 0.0015 25.9 3.3 23 433-455 7-29 (80)
33 PF10776 DUF2600: Protein of u 26.2 8E+02 0.017 26.0 13.8 121 348-489 174-296 (330)
34 smart00400 ZnF_CHCC zinc finge 25.7 75 0.0016 24.0 2.9 25 420-444 30-54 (55)
35 COG3140 Uncharacterized protei 25.6 52 0.0011 25.5 1.9 49 407-457 2-50 (60)
36 KOG4713 Cyclin-dependent kinas 25.6 1.1E+02 0.0024 29.2 4.4 46 298-344 134-185 (189)
37 KOG3951 Uncharacterized conser 25.5 86 0.0019 31.8 3.9 57 149-213 264-320 (321)
38 COG1308 EGD2 Transcription fac 25.1 68 0.0015 28.9 2.8 22 425-446 87-108 (122)
39 PF00348 polyprenyl_synt: Poly 24.7 6.1E+02 0.013 25.2 10.1 64 348-416 130-194 (260)
40 PF01713 Smr: Smr domain; Int 24.7 85 0.0019 25.5 3.3 26 433-458 4-29 (83)
41 PLN02632 phytoene synthase 23.8 8.5E+02 0.018 25.4 12.0 129 329-470 140-281 (334)
42 PF13798 PCYCGC: Protein of un 22.7 1E+02 0.0022 29.1 3.6 33 429-468 126-158 (158)
43 cd07604 BAR_ASAPs The Bin/Amph 21.5 2.9E+02 0.0062 27.3 6.8 86 46-150 12-100 (215)
44 TIGR03464 HpnC squalene syntha 21.2 8.3E+02 0.018 24.4 11.3 129 329-474 86-225 (266)
45 PRK10581 geranyltranstransfera 21.2 5.5E+02 0.012 26.5 9.1 111 333-457 153-276 (299)
46 PF03701 UPF0181: Uncharacteri 20.9 1.4E+02 0.003 22.9 3.3 45 407-453 2-46 (51)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.2e-138 Score=1136.87 Aligned_cols=477 Identities=51% Similarity=0.870 Sum_probs=452.5
Q ss_pred CCCCCCCCCCCCC-CccccCCCccccchHHHHHHHHHHHHHHHHHhc---cccCccCHHHHHHHHHHHHHhCcccCcHHH
Q 010399 20 RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS---NNTAWKTLEEIVAIVNQLQRLGVAYHFENE 95 (511)
Q Consensus 20 r~~~~~~ps~W~d-~fl~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~---~~~~~~d~~~~L~lID~lqrLGi~~hFe~E 95 (511)
||+++||||+||| +|+++++... ....+.+++++||++||+||.. .. |++++|+|||+||||||+|||++|
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~-~~~~~~~~~~~lk~~v~~~~~~~~~~~----~~~~~l~liD~lqrLGi~~hF~~E 75 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPV----DLFERLWLIDRLQRLGISYHFEDE 75 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcc-hhHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHHcCchhhhHHH
Confidence 7899999999999 6666544322 1226889999999999999986 45 899999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhcccccccccccccccchhhhhhhhhhcccc
Q 010399 96 IKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLR 175 (511)
Q Consensus 96 I~~~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~ 175 (511)
|+++|++||++|.+..... ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||+
T Consensus 76 I~~~L~~i~~~~~~~~~~~----~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~ 151 (542)
T cd00684 76 IKEILDYIYRYWTERGESN----EDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLS 151 (542)
T ss_pred HHHHHHHHHHhhccccccc----CCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcC
Confidence 9999999999984321111 479999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHHhHhhc---CCCchHHHHHHhccCccccCcchHHHHhhHHHhhcCCccccHHHHHHHHHhhH
Q 010399 176 VQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN 252 (511)
Q Consensus 176 ~~gE~iLdeA~~Ft~~~L~~~~~~---~~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn 252 (511)
+|||+|||||++||++||++.+++ ++++|+++|++||++|+|+++||||||+||++|+++ +++|++||||||+|||
T Consensus 152 ~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~-~~~n~~lLelAkldfn 230 (542)
T cd00684 152 FPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQE-DDHNETLLELAKLDFN 230 (542)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCC-ccccHHHHHHHHHHHH
Confidence 999999999999999999999987 789999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccc------------------------------------------------
Q 010399 253 LLQALHRIELSEISRWWKDIDFATKLPFARDR------------------------------------------------ 284 (511)
Q Consensus 253 ~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR------------------------------------------------ 284 (511)
+||++||+||++++|||+++||.++|||||||
T Consensus 231 ~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~ 310 (542)
T cd00684 231 ILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELE 310 (542)
T ss_pred HHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHH
Confidence 99999999999999999999999999999999
Q ss_pred --------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Q 010399 285 --------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEE 355 (511)
Q Consensus 285 --------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleE 355 (511)
||.+++++||+|||+||.+|+++++|+++++.+ +++ +++.|++++|+++++||++||+|+++||+||++|
T Consensus 311 ~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~-~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eE 389 (542)
T cd00684 311 LFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEE 389 (542)
T ss_pred HHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 999999999999999999999999999999999 555 8999999999999999999999999999999999
Q ss_pred HHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCCC
Q 010399 356 CVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGV 435 (511)
Q Consensus 356 Yl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~gv 435 (511)
||++|.+|+|+++++++++++||.. +|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+|+
T Consensus 390 Yl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~ 468 (542)
T cd00684 390 YMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGV 468 (542)
T ss_pred HHhhhhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCC
Confidence 9999999999999999999999999 999999997777999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhccc
Q 010399 436 SEEEACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDP 508 (511)
Q Consensus 436 S~EeA~~~i~~~Ie~~wk~ln~e~l~~-~~vp~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~P 508 (511)
|+|+|+++++++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|+..||++|++||++|
T Consensus 469 s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 469 SEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 999999999999999999999999998 7899999999999999999999999999999788999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=7.4e-122 Score=1026.96 Aligned_cols=426 Identities=27% Similarity=0.447 Sum_probs=404.9
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhcccccc
Q 010399 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEK 151 (511)
Q Consensus 72 d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~ 151 (511)
+.++++++||+||||||+|||++||+++|+++|++|.++.... ..||++|||+|||||||||+||||||++|+|+
T Consensus 269 ~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~----~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~- 343 (784)
T PLN02279 269 DQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEI----FLDLATCALAFRILRLNGYDVSSDPLKQFAED- 343 (784)
T ss_pred cHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCC----CCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-
Confidence 6899999999999999999999999999999999985432111 47999999999999999999999999999976
Q ss_pred ccccccc---ccchhhhhhhhhhcccccCCccHHHHHHHHHHHHHHhHhhc-------CCCchHHHHHHhccCccccCcc
Q 010399 152 GEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH-------LSTPLVDQVEHSLEIPLHRGMP 221 (511)
Q Consensus 152 G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~-------~~~~L~~~V~~aL~~P~~~~~~ 221 (511)
+ |++++ .+||+||||||||||+++|||+|||||+.||++||++.++. ++++|+++|+|||++|||+++|
T Consensus 344 ~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~ 422 (784)
T PLN02279 344 H-FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLE 422 (784)
T ss_pred c-ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCcc
Confidence 5 99998 59999999999999999999999999999999999998874 5788999999999999999999
Q ss_pred hHHHHhhHHHhhcCCcc------------ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccccccccccc-----
Q 010399 222 RLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR----- 284 (511)
Q Consensus 222 Rlear~yI~~Y~~~~~~------------~n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR----- 284 (511)
|||||+||++|+++ +. +|++||||||+|||+||++||+||++|+||||++|| .+|||||||
T Consensus 423 RlEaR~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Y 500 (784)
T PLN02279 423 RLANRRSIENYAVD-DTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCY 500 (784)
T ss_pred HHHHHHHHHHhccc-cchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHH
Confidence 99999999999988 75 799999999999999999999999999999999999 699999999
Q ss_pred ---------------------------------------------------ccch-hhhhCChhHHHHHHHHHHHHHHHH
Q 010399 285 ---------------------------------------------------WEVV-AANELPKYMQVCYFALLDVVKEME 312 (511)
Q Consensus 285 ---------------------------------------------------WD~~-~~~~LPeymK~~f~al~~~~~eie 312 (511)
||++ ++++||+|||+||.+|++++|||+
T Consensus 501 f~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~ 580 (784)
T PLN02279 501 FSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIG 580 (784)
T ss_pred HHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHH
Confidence 9998 679999999999999999999999
Q ss_pred HHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhcc
Q 010399 313 DKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAI 391 (511)
Q Consensus 313 ~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~ 391 (511)
.++.+ ||+ ++++|++++|++++++|++||+|+++||+||++|||+|+.+|+|++++++++++++|.. +|+++++| +
T Consensus 581 ~~~~~~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~-l~eev~e~-~ 657 (784)
T PLN02279 581 DKAFTWQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPK-LSEEVVDS-P 657 (784)
T ss_pred HHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCC-CCHHHHhC-c
Confidence 99776 888 99999999999999999999999999999999999999999999999999999999998 99999999 7
Q ss_pred chhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCh
Q 010399 392 SVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY--GVSEEEACNKIKGMVEIEWMNINEEIQDP--NHPPL 467 (511)
Q Consensus 392 ~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~--gvS~EeA~~~i~~~Ie~~wk~ln~e~l~~--~~vp~ 467 (511)
.+|+|+++++.|+||+|||+||++|+++|++ |+|+|||+|+ |+|+|||+++++++|+++||+||++++++ +++|+
T Consensus 658 ~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~ 736 (784)
T PLN02279 658 ELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPR 736 (784)
T ss_pred chhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Confidence 9999999999999999999999999999998 9999999996 89999999999999999999999999964 47999
Q ss_pred hHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhcccCCC
Q 010399 468 QWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 511 (511)
Q Consensus 468 ~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~Pi~~ 511 (511)
+|+++++|+||++++||+++||||.+ .||++|++||++|||+
T Consensus 737 ~~~~~~ln~aR~~~~~Y~~~Dgyt~~--~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 737 ECKDLFWKMSKVLHLFYRKDDGFTSN--DMMSLVKSVIYEPVSL 778 (784)
T ss_pred HHHHHHHHHHHhhhhheeCCCCCChH--HHHHHHHHHhccCCcC
Confidence 99999999999999999999999964 7999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=9.3e-93 Score=789.85 Aligned_cols=392 Identities=27% Similarity=0.389 Sum_probs=352.5
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhccC-CCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhccccc
Q 010399 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN-GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (511)
Q Consensus 72 d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~-~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~ 150 (511)
+++++|++||+||||||+|||++||+++|+++|++|.+ +++........|+++|||+|||||||||+||||||++|++
T Consensus 309 d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~- 387 (800)
T PLN02592 309 DLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK- 387 (800)
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC-
Confidence 78999999999999999999999999999999999844 3221000003799999999999999999999999999997
Q ss_pred cccccccc---ccchhhhhhhhhhcccccCCccHHHHHHHHHHHHHHhHhh--c------CCCchHHHHHHhccCccccC
Q 010399 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS--H------LSTPLVDQVEHSLEIPLHRG 219 (511)
Q Consensus 151 ~G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~--~------~~~~L~~~V~~aL~~P~~~~ 219 (511)
+|+|++.+ .+|++|||+|||||||++|||.|||+|+.||++||++.++ + ++++|+++|+|||++|||++
T Consensus 388 ~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~ 467 (800)
T PLN02592 388 GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYAS 467 (800)
T ss_pred CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcC
Confidence 79999766 8999999999999999999999999999999999999753 1 36789999999999999999
Q ss_pred cchHHHHhhHHHhhcCCccc-------------cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccccccccccc--
Q 010399 220 MPRLEARQYISIYEADNSTR-------------NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR-- 284 (511)
Q Consensus 220 ~~Rlear~yI~~Y~~~~~~~-------------n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR-- 284 (511)
+||||||+||++|+++ +++ |++||||||+|||+||++||+||++|+||||++|| .+|||||||
T Consensus 468 l~RlEaR~yI~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~v 545 (800)
T PLN02592 468 LPRVETRFYIEQYGGE-DDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELL 545 (800)
T ss_pred cchHHHHHHHHHhcCC-cccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHH
Confidence 9999999999999987 654 99999999999999999999999999999999999 599999999
Q ss_pred --------------------------------------------------------------ccchhhhhCCh------h
Q 010399 285 --------------------------------------------------------------WEVVAANELPK------Y 296 (511)
Q Consensus 285 --------------------------------------------------------------WD~~~~~~LPe------y 296 (511)
||.+++++||+ |
T Consensus 546 e~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~ 625 (800)
T PLN02592 546 LAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKT 625 (800)
T ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhH
Confidence 79999999998 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHH
Q 010399 297 MQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALV 375 (511)
Q Consensus 297 mK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~ 375 (511)
||+||.|||||+|||+.++.+ ||+ ++++|++++|.++|+ +|.++|+ +|+|++.+++++++
T Consensus 626 mki~f~aLy~tineia~~a~~~qGr-~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~~~ 686 (800)
T PLN02592 626 GEELVGLLLGTLNQLSLDALEAHGR-DISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKTIN 686 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHHHH
Confidence 999999999999999999999 888 999999999999999 6777776 55677778888888
Q ss_pred -hcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCC-CCHHHHHHHHHHHHHHHHH
Q 010399 376 -GLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG-VSEEEACNKIKGMVEIEWM 453 (511)
Q Consensus 376 -~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~g-vS~EeA~~~i~~~Ie~~wk 453 (511)
.+|.. +|+++++ +|++.++++.+.||+||++|+++|+. ..| +|+ +|.+++.+.|+..++
T Consensus 687 l~~g~~-lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~-------------~~~~~~~-~a~~~~~~~ie~~~~ 747 (800)
T PLN02592 687 LTAGRS-LSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKV-------------HINTYNP-EEKSKTTPSIESDMQ 747 (800)
T ss_pred HhcCCC-CCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhcc-------------cCCcccH-HHHHHHHHHHHHHHH
Confidence 55998 9999987 58899999999999999999999874 123 455 899999999999999
Q ss_pred HHHHhhcC-C-CCCChhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhcccCC
Q 010399 454 NINEEIQD-P-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 510 (511)
Q Consensus 454 ~ln~e~l~-~-~~vp~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~Pi~ 510 (511)
+|.+.+++ + +.||++|++.+||++| +||.. ||+.| .+|+.+|..++++||+
T Consensus 748 eL~~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~--~~~~~-~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 748 ELVQLVLQNSSDDIDPVIKQTFLMVAK---SFYYA--AYCDP-GTINYHIAKVLFERVA 800 (800)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHH---HHHHh--hcCCH-HHHHHHHHHHhCCCCC
Confidence 99999996 3 4699999999999999 55655 99998 8899999999999985
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=6.2e-57 Score=427.40 Aligned_cols=175 Identities=52% Similarity=0.842 Sum_probs=147.9
Q ss_pred CCCCccccC-----CCccccchHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHH
Q 010399 30 WGDHFINVS-----SNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY 104 (511)
Q Consensus 30 W~d~fl~~~-----~~~~~~~~~~~~~~~~Lk~eVr~~l~~~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~ 104 (511)
|||+||++. ++.+...+.+.+++++||++||.||..... |++++|+|||+||||||+|||++||+++|++||
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~---d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 77 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYP---DPLEKLELIDTLQRLGISYHFEDEIKEILDSIY 77 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSS---HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 999999532 111233468899999999999999987542 799999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhcccccccccccccccchhhhhhhhhhcccccCCccHHHH
Q 010399 105 DSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 184 (511)
Q Consensus 105 ~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLde 184 (511)
+.|..... . ..|||+|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||+++||+||||
T Consensus 78 ~~~~~~~~----~-~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLde 152 (183)
T PF01397_consen 78 RSWDEDNE----E-IDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDE 152 (183)
T ss_dssp HTTTTTSH----T-SSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHH
T ss_pred hhcccccc----c-cCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHH
Confidence 99843110 0 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhcCCC---chHHHHHHhc
Q 010399 185 ACEFSRKHLKSLLSHLST---PLVDQVEHSL 212 (511)
Q Consensus 185 A~~Ft~~~L~~~~~~~~~---~L~~~V~~aL 212 (511)
|+.||++||++++++..+ +|+++|+|||
T Consensus 153 A~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 153 ARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 999999999999986543 4999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=1.2e-36 Score=302.61 Aligned_cols=213 Identities=28% Similarity=0.374 Sum_probs=195.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccccccccccc--------------------------------------
Q 010399 243 ILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR-------------------------------------- 284 (511)
Q Consensus 243 lLelAKlDFn~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR-------------------------------------- 284 (511)
+|+|||+|||+||++||+|++++++||+++|+..+.+.+|+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 689999999999999999999999999999998888888888
Q ss_pred ------------------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 010399 285 ------------------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWF 345 (511)
Q Consensus 285 ------------------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~ 345 (511)
||+...+.+|++++.++.++.++++++...+.+ +++-++++++++.|.+++.++++|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 777778899999999999999999999998887 3331478899999999999999999999
Q ss_pred hCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcch
Q 010399 346 HAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSS 425 (511)
Q Consensus 346 ~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~ 425 (511)
..|++||++||+++|+.|+|+++++.++.++||.. +++...+++...+.+.++++.+++|+|||.||+||..+|++.|.
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~ 239 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFA-LGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNL 239 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSC-HTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCc-cccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccH
Confidence 99999999999999999999999999999999876 67666666666677999999999999999999999999999999
Q ss_pred hhHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 010399 426 VECYVQQYGVSEEEACNKIKGMVEIEWMNIN 456 (511)
Q Consensus 426 V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln 456 (511)
|.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 240 v~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 240 VVVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=6.7e-34 Score=285.01 Aligned_cols=226 Identities=46% Similarity=0.836 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccc----------------------------------------------------
Q 010399 257 LHRIELSEISRWWKDIDFATKLPFARDR---------------------------------------------------- 284 (511)
Q Consensus 257 ~hq~EL~~lsrWwk~~~l~~~L~faRdR---------------------------------------------------- 284 (511)
.||+|++++++||+++||....+++|.+
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 4899999999999999997777688877
Q ss_pred ----ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhh
Q 010399 285 ----WEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVEN 359 (511)
Q Consensus 285 ----WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~ 359 (511)
|++...+.+|++++.++.+++++.++++..+.+ +|. ....++++.|.+++.++.+||+|+..|++||++||+.+
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~ 159 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGS-ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLEN 159 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHh
Confidence 666778899999999999999999999999887 555 78999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCCCCHHH
Q 010399 360 STMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEE 439 (511)
Q Consensus 360 ~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~gvS~Ee 439 (511)
|..|+|+++++.++++++|.. +|++.+.+.+..+++++.++.+++|+||++||+||+.+|+.+|+|.|||+++|+|.++
T Consensus 160 R~~~~g~~~~~~l~~~~~g~~-l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~e 238 (284)
T cd00868 160 RRVSIGYPPLLALSFLGMGDI-LPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEE 238 (284)
T ss_pred ceehhhHHHHHHHHHHHcCCC-CCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHH
Confidence 999999999999999999999 9995444459999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhhhhc
Q 010399 440 ACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLY 484 (511)
Q Consensus 440 A~~~i~~~Ie~~wk~ln~e~l~~-~~vp~~~~~~~lN~aR~~~~~Y 484 (511)
|++++.++++++|+++++.+... ++.|+.+++.+.|.+|.....|
T Consensus 239 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 239 ALEELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999864 3678999999999999877654
No 7
>PLN02150 terpene synthase/cyclase family protein
Probab=99.98 E-value=1.9e-32 Score=234.46 Aligned_cols=95 Identities=40% Similarity=0.688 Sum_probs=92.3
Q ss_pred hhcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhh-cccCCCCCCCch
Q 010399 417 QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL-YQNGDGYTNSTG 495 (511)
Q Consensus 417 ~~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~aR~~~~~-Y~~~Dg~t~~~~ 495 (511)
++|||++|+|+|||||||+|+|||+++++++|+++||++|+||++++++|.+++++++|+||+++|+ |+++||||.++.
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~ 80 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHG 80 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999 999999998878
Q ss_pred hHHHHHHhhhcccCCC
Q 010399 496 KTKDRIASLLVDPLPM 511 (511)
Q Consensus 496 ~~k~~I~~ll~~Pi~~ 511 (511)
.+|++|++||++|||+
T Consensus 81 ~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 81 KLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHhccCCCC
Confidence 9999999999999986
No 8
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=99.89 E-value=7e-23 Score=208.49 Aligned_cols=160 Identities=17% Similarity=0.093 Sum_probs=146.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHH
Q 010399 294 PKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEA 373 (511)
Q Consensus 294 PeymK~~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~ 373 (511)
|+....+..++.++...+...+. . ....++++.|.+++.++++|++|+..|++||++||+++|..|+|+++++.++
T Consensus 105 ~~~~~p~~~~~~d~~~r~~~~~~---~-~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l~ 180 (303)
T cd00687 105 PDDATPLEFGLADLWRRTLARMS---A-EWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGLS 180 (303)
T ss_pred CCCCCHHHHHHHHHHHHhccCCC---H-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHHH
Confidence 57778888888888877754321 2 5678999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHh-hcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHH
Q 010399 374 LVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQ-ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEW 452 (511)
Q Consensus 374 ~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~-~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~w 452 (511)
.+++|.. +|+++.+. +...+++++++.+++|+|||+||+||. +.|+.+|+|.|+|+++|+|.|+|++++.+++++++
T Consensus 181 ~~~~g~~-lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~eA~~~~~~~~~~~~ 258 (303)
T cd00687 181 EFIGGPE-VPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLEEAISVVRDMHNERI 258 (303)
T ss_pred HHhcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999998 99999887 778889999999999999999999999 89999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 010399 453 MNINEEI 459 (511)
Q Consensus 453 k~ln~e~ 459 (511)
+++.+..
T Consensus 259 ~~f~~~~ 265 (303)
T cd00687 259 TQFEELE 265 (303)
T ss_pred HHHHHHH
Confidence 9887654
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.57 E-value=1.5e-14 Score=138.27 Aligned_cols=180 Identities=26% Similarity=0.347 Sum_probs=147.5
Q ss_pred hhhCChhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhH
Q 010399 290 ANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPML 369 (511)
Q Consensus 290 ~~~LPeymK~~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~ 369 (511)
....|.++...+..+...++++..... . .....+.+.|.+++.++..|+.|... ++||++||+.++..++ +.++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~ 124 (243)
T cd00385 51 IDGLPEAILAGDLLLADAFEELAREGS---P-EALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLV 124 (243)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHhCCC---H-HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHH
Confidence 356788999999999998888864321 2 56889999999999999999999877 8999999999999998 4445
Q ss_pred HHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcC-CCcchhhHHHHcCCC------------C
Q 010399 370 AVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERG-DAPSSVECYVQQYGV------------S 436 (511)
Q Consensus 370 ~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rG-dv~n~V~cyMke~gv------------S 436 (511)
......+++.. .++ ..+.+...++...++.+++|.||+.|+.+|.++| +..|++.++|+++|+ +
T Consensus 125 ~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 201 (243)
T cd00385 125 GALCLLGAGLS-GGE--AELLEALRKLGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGS 201 (243)
T ss_pred HHHHHHHHHHh-CCC--HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCCh
Confidence 55566666655 555 3344667889999999999999999999999986 678999999999999 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhh
Q 010399 437 EEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLAR 478 (511)
Q Consensus 437 ~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~aR 478 (511)
.++|.+++..+++++|+.+++........+..+++.+.++.|
T Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (243)
T cd00385 202 LEEALEELAKLAEEALKELNELILSLPDVPRALLALALNLYR 243 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhC
Confidence 899999999999999999998776432356667777777653
No 10
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=95.84 E-value=0.073 Score=55.44 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=100.5
Q ss_pred hhhCChhHHHHHHHHHH----------HHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHh
Q 010399 290 ANELPKYMQVCYFALLD----------VVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVE 358 (511)
Q Consensus 290 ~~~LPeymK~~f~al~~----------~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~ 358 (511)
.+...+.|+.++.-|.. .+++.=..+.. =|. ++-.-+.++--+++.+...|... -+.-|.-.+|-.
T Consensus 103 ~~e~~~~m~~f~~dL~~G~~qkhP~l~~v~~~l~~~lr~fGp-F~s~~IikSTLdFv~g~~iEq~n--f~~~p~A~~fP~ 179 (357)
T cd00686 103 KDDPYPTMVNYFDDLQAGREQAHPWWALVNEHFPNVLRHFGP-FCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQ 179 (357)
T ss_pred ccccchHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhhhc--cCCCCCCcccch
Confidence 34445566666665532 23332222222 244 66777788888999999999764 344677777777
Q ss_pred hcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhh---HhhhccCccchhhHhhc-CCCcchhhHHHHcCC
Q 010399 359 NSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL---IARLDDDVHTYKVEQER-GDAPSSVECYVQQYG 434 (511)
Q Consensus 359 ~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~---i~RL~NDI~S~k~E~~r-Gdv~n~V~cyMke~g 434 (511)
..+.=+|++-+.+++. .|++.|.-...+..+..+... ..-++|||.||=||.-. ++-.|.|.-|-+.+|
T Consensus 180 ylR~ksGl~E~yA~Fi-------FPk~~FpE~~~~~qi~~AIp~~~~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~G 252 (357)
T cd00686 180 FLRRMNGLGHCVGASL-------WPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDE 252 (357)
T ss_pred HHHhccCCcceeEEEe-------cchhhCchHhhHHHhhHHHHHHHHHHHhhhhhhheehhhcccccccchHHHhhhhcC
Confidence 7777677666544322 233333222223333334443 44588999999999854 455688888888899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010399 435 VSEEEACNKIKGMVEIEWMNINEEIQDP 462 (511)
Q Consensus 435 vS~EeA~~~i~~~Ie~~wk~ln~e~l~~ 462 (511)
+|..+|.+.+..-.-.+-+++.+ .|.+
T Consensus 253 iS~~eAL~~lt~dTv~~s~rv~~-VLse 279 (357)
T cd00686 253 ISLHEALEKLTQDTLHSSKQMVA-VFSD 279 (357)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 99999998776655555555543 3443
No 11
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=94.09 E-value=0.21 Score=52.84 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=76.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhH---HHH
Q 010399 322 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPK---IIR 398 (511)
Q Consensus 322 ~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~---i~~ 398 (511)
++-.-+.++--+++.+...|++.. +-.|.-..|-..-+.=+|+..+.+...+-. .. .|+. ..+.. ++-
T Consensus 145 f~anmI~~STLdFi~g~~LE~~~f--~~~p~A~~FP~fLR~ktGlsEaYA~FiFPk-~~-fpe~-----~~~~~y~~AIp 215 (376)
T PF06330_consen 145 FCANMIVKSTLDFINGCWLEQKNF--HGSPGAPDFPDFLRRKTGLSEAYAFFIFPK-AL-FPEV-----EYFIQYTPAIP 215 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT--T-TT-S-TT-----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC--CCCCCCccccHHHHhccCcchhheeeeccc-cc-CChH-----HHHHHHHHHHH
Confidence 566677777888888888887643 223544444444455556665555433221 21 2221 12233 333
Q ss_pred HhhhHhhhccCccchhhHhh-cCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010399 399 SSSLIARLDDDVHTYKVEQE-RGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEE 458 (511)
Q Consensus 399 ~~~~i~RL~NDI~S~k~E~~-rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~e 458 (511)
-.+..+-++|||.||=||.- -|+-.|.|.-+-.-+|+|.-+|.+.+.+-.-++-+++.+-
T Consensus 216 dl~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~v 276 (376)
T PF06330_consen 216 DLMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRRV 276 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445558999999999977 7888999988877799999999988766666565555443
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=92.25 E-value=2.6 Score=41.04 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccc-ccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTM-SSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 401 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~v-Ssg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~ 401 (511)
....+.+...+++.+...+..|... ..||.++|++.... |.++....+......+.. +++..+. ..++.+..+
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~lG 159 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA--DDEQAEA---LKDYGRALG 159 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc--CHHHHHH---HHHHHHHHH
Confidence 4555667788899999999888654 57999999999998 666544433333323332 3333333 356778888
Q ss_pred hHhhhccCccchhhHh----------hcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 402 LIARLDDDVHTYKVEQ----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 402 ~i~RL~NDI~S~k~E~----------~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
+..-+.||+..+.... .+|.. +...+++ .+.+.+.++++.+.+..
T Consensus 160 ~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~ 214 (236)
T cd00867 160 LAFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEA 214 (236)
T ss_pred HHHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 8889999998876544 45554 5555555 56666667777766544
No 13
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=76.37 E-value=67 Score=33.50 Aligned_cols=86 Identities=9% Similarity=0.052 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhH
Q 010399 324 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLI 403 (511)
Q Consensus 324 ~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i 403 (511)
+..+.+...+++.+-+.+..|.. ...+|.++|++....=+|..+..++..-++-.. .+++..+.+ .++-...++.
T Consensus 135 ~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag-~~~~~~~~l---~~~G~~lG~a 209 (322)
T TIGR02749 135 VKLISKVITDFAEGEIKQGLNQF-DSDLSLEDYLEKSFYKTASLVAASSKAAAVLSD-VPSQVANDL---YEYGKHLGLA 209 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcC-cCHHHHHHH---HHHHHHHHHH
Confidence 44444555566666666666543 234799999997766555554333211112122 455555443 5677788888
Q ss_pred hhhccCccchh
Q 010399 404 ARLDDDVHTYK 414 (511)
Q Consensus 404 ~RL~NDI~S~k 414 (511)
.-+.||+..+.
T Consensus 210 FQi~DDild~~ 220 (322)
T TIGR02749 210 FQVVDDILDFT 220 (322)
T ss_pred HHHHHHhccCC
Confidence 89999998765
No 14
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=72.71 E-value=33 Score=34.29 Aligned_cols=120 Identities=14% Similarity=0.050 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 402 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~ 402 (511)
.+..+.+.....+.+-..+..|... ..||.++|++....-+|.....+....++--. .+++..+- ..++-+..+.
T Consensus 109 ~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~-~~~~~~~~---l~~~g~~lG~ 183 (259)
T cd00685 109 ALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAG-ADEEEAEA---LKRFGRNLGL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 4555666777788888888888654 57999999999887777665444322222111 23443332 3667788888
Q ss_pred HhhhccCccchhhHh-----------hcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 403 IARLDDDVHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 403 i~RL~NDI~S~k~E~-----------~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
..-+.||+..+.... ..|.. +...+|.- .+.+...++++++.+..
T Consensus 184 afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~-T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 184 AFQIQDDILDLFGDPETLGKPVGSDLREGKC-TLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHhhcccCChHHHCCCcchHHHcCCc-hHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 888889977664422 22332 44444443 56677777777776654
No 15
>PLN02890 geranyl diphosphate synthase
Probab=70.85 E-value=65 Score=35.07 Aligned_cols=88 Identities=14% Similarity=0.035 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 402 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~ 402 (511)
++..+.++...++.+-+.+..|.. ...+|+++|++....-+|..+..++..-++=-. .+++..+.+ ..+-+..++
T Consensus 228 ~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilag-a~~~~~~~l---~~fG~~lGl 302 (422)
T PLN02890 228 VVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILAG-QTAEVAVLA---FEYGRNLGL 302 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-cCHHHHHHH---HHHHHHHHH
Confidence 455666777788888888888864 346899999987666555554333222121112 356665543 466777888
Q ss_pred HhhhccCccchhh
Q 010399 403 IARLDDDVHTYKV 415 (511)
Q Consensus 403 i~RL~NDI~S~k~ 415 (511)
..-+.||+..|.-
T Consensus 303 AFQI~DDiLD~~g 315 (422)
T PLN02890 303 AFQLIDDVLDFTG 315 (422)
T ss_pred HHHHHHHHHhhcC
Confidence 8888899887754
No 16
>PLN02857 octaprenyl-diphosphate synthase
Probab=66.35 E-value=58 Score=35.38 Aligned_cols=86 Identities=12% Similarity=0.092 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhH
Q 010399 324 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLI 403 (511)
Q Consensus 324 ~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i 403 (511)
+..+.+...+++.+-+.+..+.. +.-+|.++|++....=+|..+..+...-++=-. .+++..+.+ .++-+..++.
T Consensus 229 ~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallag-a~~~~~~~l---~~fG~~LGiA 303 (416)
T PLN02857 229 IKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFSG-VDSSVKEQM---YEYGKNLGLA 303 (416)
T ss_pred HHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHH
Confidence 33444455555555555566543 345799999998776555554333221111112 455555443 5667778888
Q ss_pred hhhccCccchh
Q 010399 404 ARLDDDVHTYK 414 (511)
Q Consensus 404 ~RL~NDI~S~k 414 (511)
.-+.||+..+.
T Consensus 304 FQI~DDiLD~~ 314 (416)
T PLN02857 304 FQVVDDILDFT 314 (416)
T ss_pred HHHHHHHHhhc
Confidence 88889988775
No 17
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=62.59 E-value=1.7e+02 Score=30.47 Aligned_cols=82 Identities=7% Similarity=0.022 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhc--CCCcCcHHHHhhccchhHHHHHhhhH
Q 010399 326 YAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSSSLI 403 (511)
Q Consensus 326 ~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~m--g~~~l~~e~~e~~~~~~~i~~~~~~i 403 (511)
.+.+...+++.+-..+..|.. +.-+|.++|++....-+|..+..++ ..|. +. .+++..+.+ .++-+..++.
T Consensus 133 ~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~~-~~ga~~ag--~~~~~~~~l---~~~g~~lG~a 205 (319)
T TIGR02748 133 ILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAASC-QLGAIASG--ANEAIVKKL---YWFGYYVGMS 205 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHHHHH
Confidence 344445556666666666643 3457999999887766665543332 2221 21 344444432 5566778888
Q ss_pred hhhccCccchh
Q 010399 404 ARLDDDVHTYK 414 (511)
Q Consensus 404 ~RL~NDI~S~k 414 (511)
.-+.||+..+.
T Consensus 206 FQI~DDilD~~ 216 (319)
T TIGR02748 206 YQITDDILDFV 216 (319)
T ss_pred HHHHHHHHHcc
Confidence 88889987764
No 18
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=61.41 E-value=1.8e+02 Score=28.91 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=57.8
Q ss_pred CCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhH-hhcCC--Ccc
Q 010399 348 KYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVE-QERGD--APS 424 (511)
Q Consensus 348 g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E-~~rGd--v~n 424 (511)
..++|++|+......+.|....+++..++.... ..++.+.+...-..+. ++.++-|+. .. ..+|- ++.
T Consensus 107 ~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~~--~~~~~~~a~~lG~alq----l~nilRd~~---~D~~~~gR~ylP~ 177 (267)
T PF00494_consen 107 TPYETFADLERYCYYVAGSVGLLLLQLLGAHDP--DEAARDAARALGRALQ----LTNILRDIP---EDALRRGRIYLPL 177 (267)
T ss_dssp S--SSHHHHHHHHHHHTHHHHHHHHHHHHSSTS--HHHHHHHHHHHHHHHH----HHHHHHTHH---HH-HHTT---S-H
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHHH----HHHHHHHhH---HHHHhcccccCCc
Confidence 457899999999998888877777766655332 1234443222122222 222233443 44 34554 343
Q ss_pred hhhHHHHcCCCCHHHHHHH----------HHHHHHHHHHHHHHhhcCCCCC-ChhHHHH
Q 010399 425 SVECYVQQYGVSEEEACNK----------IKGMVEIEWMNINEEIQDPNHP-PLQWLLP 472 (511)
Q Consensus 425 ~V~cyMke~gvS~EeA~~~----------i~~~Ie~~wk~ln~e~l~~~~v-p~~~~~~ 472 (511)
- .|.++|+|.++-... +..++..+...+.+..---..+ |..+.-.
T Consensus 178 d---~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~~~~~~~ 233 (267)
T PF00494_consen 178 D---DLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPPPRARPA 233 (267)
T ss_dssp H---HHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--TTHHHH
T ss_pred h---hHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhhhHH
Confidence 3 467899988765432 4555555555555443222345 4434443
No 19
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=58.93 E-value=1.8e+02 Score=30.32 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 402 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~ 402 (511)
.+..+.+....++.+-..+-.+.... +|.++|+.+-..=+|.....+...-++--. .+++..+.+ ...-+..++
T Consensus 135 ~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~-~~~~~~~~l---~~~g~~lGl 208 (322)
T COG0142 135 AIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAG-ADEELLEAL---EDYGRNLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHhhH
Confidence 45666777788888888888876555 999999999776666555444332222122 345555554 567788888
Q ss_pred HhhhccCccchhhH-hhcCCC---------cchhhHHHHcCCC
Q 010399 403 IARLDDDVHTYKVE-QERGDA---------PSSVECYVQQYGV 435 (511)
Q Consensus 403 i~RL~NDI~S~k~E-~~rGdv---------~n~V~cyMke~gv 435 (511)
..=+.||+..+..+ ..-|+. .+...+|.-+.+.
T Consensus 209 aFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~ 251 (322)
T COG0142 209 AFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKAN 251 (322)
T ss_pred HHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCc
Confidence 88899999887764 222332 3666666666543
No 20
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=57.32 E-value=1.6e+02 Score=29.59 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhcc
Q 010399 329 EAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDD 408 (511)
Q Consensus 329 k~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~N 408 (511)
+.+.+++.++-+.. .....+|++|+......+.|+...+++-.+ |.. ++.........-..+. ++-++-
T Consensus 85 ~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~vg~l~~~ll--g~~--~~~~~~~a~~lG~Alq----ltnilR 153 (266)
T TIGR03465 85 EDFLEVIDGMEMDL---EQTRYPDFAELDLYCDRVAGAVGRLSARIF--GAT--DARTLEYAHHLGRALQ----LTNILR 153 (266)
T ss_pred HHHHHHHHHHHHHc---CCCCCCCHHHHHHHHHHhHHHHHHHHHHHh--CCC--ChhHHHHHHHHHHHHH----HHHHHH
Confidence 44667777774333 334578999988888877766666555444 432 2333332211122222 223334
Q ss_pred CccchhhHhhcCCC--cchhhHHHHcCCCCHH---------HHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHh
Q 010399 409 DVHTYKVEQERGDA--PSSVECYVQQYGVSEE---------EACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLA 477 (511)
Q Consensus 409 DI~S~k~E~~rGdv--~n~V~cyMke~gvS~E---------eA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~a 477 (511)
|+. ....+|-+ +-- -|.++|+|.+ ...+-+..+++.+..-+.+..--...+|......++-.+
T Consensus 154 dv~---eD~~~gR~ylP~~---~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~~~~~~~~~ 227 (266)
T TIGR03465 154 DVG---EDARRGRIYLPAE---ELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAARAMA 227 (266)
T ss_pred HhH---HHHhCCCeecCHH---HHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhhhHHHHHHH
Confidence 553 33456653 322 3577898876 344556667777666555543222357754444443333
No 21
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=57.08 E-value=8.6 Score=36.20 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=26.1
Q ss_pred hcCCCcchhhHHHHcC-CCCHHHHHHHHHHH
Q 010399 418 ERGDAPSSVECYVQQY-GVSEEEACNKIKGM 447 (511)
Q Consensus 418 ~rGdv~n~V~cyMke~-gvS~EeA~~~i~~~ 447 (511)
.||-.+..|.||+-++ +.|.++|.+++++.
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~i 149 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRKI 149 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHhc
Confidence 5677789999999885 99999999999873
No 22
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=52.64 E-value=12 Score=36.39 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=33.3
Q ss_pred HhhhccCccchhhHhhcCC-CcchhhHHHHcCCCCHHHHHHHHHHHHH
Q 010399 403 IARLDDDVHTYKVEQERGD-APSSVECYVQQYGVSEEEACNKIKGMVE 449 (511)
Q Consensus 403 i~RL~NDI~S~k~E~~rGd-v~n~V~cyMke~gvS~EeA~~~i~~~Ie 449 (511)
.-+|--++..+|+..+.-. +.-+=.+.|+.+|+|++||+.+++++-=
T Consensus 127 ~~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM 174 (194)
T COG3707 127 RRALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAM 174 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4445566667777644333 3445557999999999999999998643
No 23
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=51.66 E-value=14 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCcchhhHHHHcCCCCHHHHHHHHHHHHHH
Q 010399 421 DAPSSVECYVQQYGVSEEEACNKIKGMVEI 450 (511)
Q Consensus 421 dv~n~V~cyMke~gvS~EeA~~~i~~~Ie~ 450 (511)
-+.-++.+.|..+|+|+++|.+.+++.--+
T Consensus 14 ~I~~AkgiLm~~~g~~e~~A~~~Lr~~Am~ 43 (56)
T PF03861_consen 14 VIEQAKGILMARYGLSEDEAYRLLRRQAMR 43 (56)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 345678899999999999999998876543
No 24
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=49.46 E-value=1.7e+02 Score=29.15 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhcc
Q 010399 329 EAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDD 408 (511)
Q Consensus 329 k~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~N 408 (511)
+.+.+++.++-.... ....||++|.......+.|+...+++..++.+ . +++........-..+. ++.++-
T Consensus 93 ~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~-~--~~~~~~~A~~lG~Alq----ltnilR 162 (265)
T cd00683 93 EPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVFGAS-S--DEAALERARALGLALQ----LTNILR 162 (265)
T ss_pred HHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC-C--ChHHHHHHHHHHHHHH----HHHHHH
Confidence 456677777754444 45678998888888777766655555444331 1 2223322211122222 223334
Q ss_pred CccchhhHhhcCC--CcchhhHHHHcCCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHh
Q 010399 409 DVHTYKVEQERGD--APSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLA 477 (511)
Q Consensus 409 DI~S~k~E~~rGd--v~n~V~cyMke~gvS~EeA---------~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~a 477 (511)
|+. ....+|- ++.- -|.++|+|.++- ..-+..+++.+.+-+....-....+|....-.++-++
T Consensus 163 dv~---eD~~~gR~YlP~d---~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~ 236 (265)
T cd00683 163 DVG---EDARRGRIYLPRE---ELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSRFCVRAAA 236 (265)
T ss_pred HHH---HHHccCCCcCCHH---HHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhHHHHHHHH
Confidence 444 2234554 3333 267789887553 2445566666665555443222347755444444444
Q ss_pred h
Q 010399 478 R 478 (511)
Q Consensus 478 R 478 (511)
.
T Consensus 237 ~ 237 (265)
T cd00683 237 M 237 (265)
T ss_pred H
Confidence 3
No 25
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=49.14 E-value=1.4e+02 Score=32.74 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=52.1
Q ss_pred HHHHHHhccCccccCcchHHHHhhHHHhhcCCccccHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHhhccccccc
Q 010399 205 VDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN-----LLQALHRIELSEISRWWKDIDFATKLP 279 (511)
Q Consensus 205 ~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn-----~~Q~~hq~EL~~lsrWwk~~~l~~~L~ 279 (511)
+.++-.++....+....+--|+.++..+... ...|..|++..=.+++ ++-..|+++| ..=|.+|.+-+|+.
T Consensus 90 a~~ll~~~~~~~~~~~s~~~a~~~L~~~~~~-~~~d~~L~~~Gf~~~~~~~~~~~EK~Y~~~L---~~~W~eLsl~eK~~ 165 (445)
T PF13608_consen 90 APQLLEALDDGFQPSHSYQLALDLLTVMMER-SESDKELLENGFRTLNDKLYELMEKIYQDLL---EESWRELSLLEKLS 165 (445)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHH-hhchHHHHhCCcccchHHHHHHHHHHHHHHH---HHHHHhCcHHHHHH
Confidence 5666777777778888899999999999887 7788888876555544 1223344443 34588888888877
Q ss_pred ccc
Q 010399 280 FAR 282 (511)
Q Consensus 280 faR 282 (511)
..+
T Consensus 166 ~~~ 168 (445)
T PF13608_consen 166 AIW 168 (445)
T ss_pred HHH
Confidence 443
No 26
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=42.55 E-value=4.2e+02 Score=27.64 Aligned_cols=86 Identities=13% Similarity=-0.039 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhc-CCCcCcHHHHhhccchhHHHHHhhh
Q 010399 324 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL-EDMAITKRALDWAISVPKIIRSSSL 402 (511)
Q Consensus 324 ~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~m-g~~~l~~e~~e~~~~~~~i~~~~~~ 402 (511)
+..+.+....++.+-..+..|.. +.-+|.++|+.....=+|..+..++ ..|. =-. .+++..+. ...+-+..++
T Consensus 132 ~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~i~~KTa~lf~~~~-~~ga~lag-~~~~~~~~---l~~~g~~lG~ 205 (323)
T PRK10888 132 LEVMSEAVNVIAEGEVLQLMNVN-DPDITEENYMRVIYSKTARLFEAAA-QCSGILAG-CTPEQEKG---LQDYGRYLGT 205 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 33444455566666666666643 3357999999987766655543332 2221 111 34444433 3566777788
Q ss_pred HhhhccCccchhh
Q 010399 403 IARLDDDVHTYKV 415 (511)
Q Consensus 403 i~RL~NDI~S~k~ 415 (511)
..=+.||+..+..
T Consensus 206 aFQi~DD~ld~~~ 218 (323)
T PRK10888 206 AFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHhhcccC
Confidence 8888899887753
No 27
>CHL00151 preA prenyl transferase; Reviewed
Probab=42.20 E-value=3e+02 Score=28.56 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 401 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~ 401 (511)
....+.+....++.+-+.+..|.. ..-+|.++|+.....=+|..+..++..-+ ++. .+++..+. ..++-...+
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~G~~lG 208 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD--ADEKDHND---FYLYGKHLG 208 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 344555666666666655555532 33479999999755544444433222211 222 34444443 356777888
Q ss_pred hHhhhccCccchhh
Q 010399 402 LIARLDDDVHTYKV 415 (511)
Q Consensus 402 ~i~RL~NDI~S~k~ 415 (511)
+..-+.||+..+.-
T Consensus 209 ~aFQi~DDilD~~~ 222 (323)
T CHL00151 209 LAFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHHhhccc
Confidence 88889999887753
No 28
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.43 E-value=33 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCcccchhhhhccc
Q 010399 125 VALRFRLLRQHGYKVSADIFKKFR 148 (511)
Q Consensus 125 ~al~FRLLRqhGy~VS~DvF~~F~ 148 (511)
+.=.+.-|+++||++|+++++.+.
T Consensus 21 ~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 21 VKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHH
Confidence 333455558899999999988765
No 29
>PRK04132 replication factor C small subunit; Provisional
Probab=31.47 E-value=2.8e+02 Score=33.07 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=66.0
Q ss_pred cccccccc--ccchhhhhCC-hhHHHHHHHHHHHHHHHHHHHHccCCcch--hhHHHHHHHH-HHHHHHHHHHHhhCCCC
Q 010399 277 KLPFARDR--WEVVAANELP-KYMQVCYFALLDVVKEMEDKLVNKEPLCC--MYYAKEAIKG-LVKAYFVEAKWFHAKYV 350 (511)
Q Consensus 277 ~L~faRdR--WD~~~~~~LP-eymK~~f~al~~~~~eie~~~~k~~~~~~--~~~lkk~w~~-l~~ayl~EAkW~~~g~v 350 (511)
+|.|++|. |...+...+. +-||-+|..|- .++.++..+.+.--.++ +.--++...+ .--..-.=-+.-.....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (846)
T PRK04132 365 KLKFTRDKRNWSYRKAREISWELMKEIYYRLE-ELERLKKALSESILIDWNEVAKRRKEIAEKTGIRADRILEYIKGKRK 443 (846)
T ss_pred CcchhccccccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccceeecHHHHHHHHHHHHHHhCCcHHHHHHHHhcCCC
Confidence 34566665 9888777775 77888776652 23333332222100011 1111111100 00000001234456778
Q ss_pred CCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHH
Q 010399 351 PTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYV 430 (511)
Q Consensus 351 PtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyM 430 (511)
||+.+|++.+.. +|.. + ++.++-+..+.+=...-+.|+|.+ |...++|.+|+
T Consensus 444 ~~~~~~~~~~~~--------------~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 495 (846)
T PRK04132 444 PSLKNYIKIAKA--------------LGIN-L-EKTIEAMRIFAKKYSSYAEIGRML------------GTWNSSVKIIL 495 (846)
T ss_pred ccHHHHHHHHHH--------------hccc-H-HHHHHHHHHHHHHhhhHHHHhhhh------------cccccceeeee
Confidence 999999987632 3444 2 223333222333333344455543 66677787777
Q ss_pred HcCCCCHHHHHHHHHH
Q 010399 431 QQYGVSEEEACNKIKG 446 (511)
Q Consensus 431 ke~gvS~EeA~~~i~~ 446 (511)
..+-. +-|+.++|++
T Consensus 496 ~~~~~-~~~~~~~~~~ 510 (846)
T PRK04132 496 ESNTQ-EIEKLEEIRK 510 (846)
T ss_pred ccchH-HHHHHHHHHH
Confidence 54322 3344555544
No 30
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=30.54 E-value=39 Score=22.68 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=14.5
Q ss_pred HHHHcCCCCHHHHHHHHH
Q 010399 428 CYVQQYGVSEEEACNKIK 445 (511)
Q Consensus 428 cyMke~gvS~EeA~~~i~ 445 (511)
-|.++||+|.||..+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 488999999999766554
No 31
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=29.22 E-value=2.4e+02 Score=21.44 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHH
Q 010399 297 MQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEA 342 (511)
Q Consensus 297 mK~~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EA 342 (511)
|-++-+|+..|+.|++.++..+|- +..-+.++=.+|+.+.--|.
T Consensus 6 lsmiqkaih~tydelgkei~~~g~--~~d~i~kaqeeylsals~et 49 (58)
T PF13060_consen 6 LSMIQKAIHRTYDELGKEIDLQGV--IADEIQKAQEEYLSALSHET 49 (58)
T ss_pred HHHHHHHHHHhHHHHhHHhhhcch--HHHHHHHHHHHHHHHhhHHH
Confidence 567889999999999999888775 66666777777777665443
No 32
>smart00463 SMR Small MutS-related domain.
Probab=28.71 E-value=67 Score=25.91 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 010399 433 YGVSEEEACNKIKGMVEIEWMNI 455 (511)
Q Consensus 433 ~gvS~EeA~~~i~~~Ie~~wk~l 455 (511)
||++.++|+..+...|+++++.-
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999988764
No 33
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=26.19 E-value=8e+02 Score=25.97 Aligned_cols=121 Identities=17% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhcc-c-hhHHHHHhhhHhhhccCccchhhHhhcCCCcch
Q 010399 348 KYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAI-S-VPKIIRSSSLIARLDDDVHTYKVEQERGDAPSS 425 (511)
Q Consensus 348 g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~-~-~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~ 425 (511)
+..|.++=| +.+..|.++--++++.-++..+. +|++..+.+. . +| +++-+-.|+|=....+.....||. |.
T Consensus 174 ~~~p~l~W~-EfaAatGSTLgIF~L~a~A~~p~-~t~~~a~~i~~aYFP----wI~gLHILLDy~IDq~EDr~~GdL-NF 246 (330)
T PF10776_consen 174 DKYPELEWW-EFAAATGSTLGIFALFAYAADPD-LTPEDAEKIKDAYFP----WICGLHILLDYFIDQEEDREGGDL-NF 246 (330)
T ss_pred hcCCCccHH-HHHHHhccHHHHHHHHHHHcCCC-CCHHHHHHHHHcccH----HHHHHHHHHHHHhhhHhHhcCCCc-ee
Confidence 445544322 33333333333444444556666 7887776542 1 23 334444555555555555666776 99
Q ss_pred hhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCC
Q 010399 426 VECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDG 489 (511)
Q Consensus 426 V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~aR~~~~~Y~~~Dg 489 (511)
|..|- +.+++.+.+.-.++++-+...+ +|.+--.+.++-+ +-=||-.++.
T Consensus 247 v~YY~-----~~~~~~~Rl~~f~~~A~~~~~~-------Lp~~~fHr~iv~G--Lla~YLSD~K 296 (330)
T PF10776_consen 247 VFYYP-----DEEEMEERLKYFVEKALEQASR-------LPYPKFHRMIVRG--LLAMYLSDPK 296 (330)
T ss_pred eeeCC-----CHHHHHHHHHHHHHHHHHHHHh-------CCCchHHHHHHHH--HHHHHhCCHh
Confidence 97654 6799999999999999877654 6665555555533 4447866544
No 34
>smart00400 ZnF_CHCC zinc finger.
Probab=25.65 E-value=75 Score=23.99 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=20.6
Q ss_pred CCCcchhhHHHHcCCCCHHHHHHHH
Q 010399 420 GDAPSSVECYVQQYGVSEEEACNKI 444 (511)
Q Consensus 420 Gdv~n~V~cyMke~gvS~EeA~~~i 444 (511)
|.-.++|..||+-+|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 3445779999999999999998865
No 35
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.63 E-value=52 Score=25.51 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=34.2
Q ss_pred ccCccchhhHhhcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 407 DDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 407 ~NDI~S~k~E~~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
.+++.|...|+..--| --|.=.|. .|+|.-||+..+.+.+.+.-|..|+
T Consensus 2 ~~~lp~LtHeqQQ~AV-E~Iq~lMa-eGmSsGEAIa~VA~elRe~hk~~~~ 50 (60)
T COG3140 2 FAGLPSLTHEQQQKAV-ERIQELMA-EGMSSGEAIALVAQELRENHKGENR 50 (60)
T ss_pred CCccccccHHHHHHHH-HHHHHHHH-ccccchhHHHHHHHHHHHHhccccc
Confidence 3566677777765444 33555675 4999999999999888876665544
No 36
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=25.56 E-value=1.1e+02 Score=29.25 Aligned_cols=46 Identities=28% Similarity=0.343 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHc---cCCcchhhHHHHHH---HHHHHHHHHHHHH
Q 010399 298 QVCYFALLDVVKEMEDKLVN---KEPLCCMYYAKEAI---KGLVKAYFVEAKW 344 (511)
Q Consensus 298 K~~f~al~~~~~eie~~~~k---~~~~~~~~~lkk~w---~~l~~ayl~EAkW 344 (511)
..-|..|++.++||..++.. +.+ ....++|.-. +.+++.+++|++-
T Consensus 134 ~~kY~~LL~vieEmgkeirpTyagsk-s~~ERLKr~I~hAR~lVRecl~etE~ 185 (189)
T KOG4713|consen 134 QTKYADLLSVIEEMGKEIRPTYAGSK-SAMERLKRDIIHARLLVRECLQETER 185 (189)
T ss_pred chHHHHHHHHHHHHhcccCccccccc-cHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 46688999999999999987 333 4566666554 6789999999874
No 37
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.45 E-value=86 Score=31.85 Aligned_cols=57 Identities=28% Similarity=0.354 Sum_probs=39.9
Q ss_pred ccccccccccccchhhhhhhhhhcccccCCccHHHHHHHHHHHHHHhHhhcCCCchHHHHHHhcc
Q 010399 149 DEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLE 213 (511)
Q Consensus 149 d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~L~~~V~~aL~ 213 (511)
+.+|-|...-.=|+||-..|-.+-- .... +.|=.|+.||++||.. .+-+++|++-|.
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlNd------esTpK~ir~ll~ 320 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLND------ESTPKSIRHLLE 320 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcCC------CCChHHHHHHhc
Confidence 4568887777889999988887643 2222 4567899999999963 344566666553
No 38
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=25.08 E-value=68 Score=28.94 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=18.7
Q ss_pred hhhHHHHcCCCCHHHHHHHHHH
Q 010399 425 SVECYVQQYGVSEEEACNKIKG 446 (511)
Q Consensus 425 ~V~cyMke~gvS~EeA~~~i~~ 446 (511)
=|.+.|.|.|+|.|+|++.+..
T Consensus 87 DIkLV~eQa~VsreeA~kAL~e 108 (122)
T COG1308 87 DIKLVMEQAGVSREEAIKALEE 108 (122)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3889999999999999887653
No 39
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=24.72 E-value=6.1e+02 Score=25.20 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=43.6
Q ss_pred CCCCCHHHHHhhcccccchhhHHHHHHHhc-CCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhH
Q 010399 348 KYVPTFEECVENSTMSSGYPMLAVEALVGL-EDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVE 416 (511)
Q Consensus 348 g~vPtleEYl~~~~vSsg~~~~~~~~~~~m-g~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E 416 (511)
+..+|.++|++....-+|..+..++..-++ +. .+++..+. ..++-...++..-+.||+..+...
T Consensus 130 ~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~afQi~DD~~d~~~~ 194 (260)
T PF00348_consen 130 DKDPTEEEYLEIIRLKTGSLFALACQLGAILAG--ADEEQIEA---LREFGRHLGIAFQIRDDLLDLFGD 194 (260)
T ss_dssp TSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SGHHHHHH---HHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred cccccHHHHHHHHhhcchHHHHHHHHHHHHhcc--chhHHHHH---HHHHHHHHHHHHhhhhhhhhccCc
Confidence 348899999999888777665443322222 32 35555544 367788888889999998887653
No 40
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=24.67 E-value=85 Score=25.49 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010399 433 YGVSEEEACNKIKGMVEIEWMNINEE 458 (511)
Q Consensus 433 ~gvS~EeA~~~i~~~Ie~~wk~ln~e 458 (511)
||++.+||...+...+.++++.-...
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~~ 29 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIRE 29 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHSE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCE
Confidence 79999999999999999998654433
No 41
>PLN02632 phytoene synthase
Probab=23.78 E-value=8.5e+02 Score=25.45 Aligned_cols=129 Identities=13% Similarity=0.179 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCC-cCc-HHHHhhccchhHHHHHhhhHhhh
Q 010399 329 EAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDM-AIT-KRALDWAISVPKIIRSSSLIARL 406 (511)
Q Consensus 329 k~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~-~l~-~e~~e~~~~~~~i~~~~~~i~RL 406 (511)
+.+.+++.++..... ....+|++|+......+.|+--.+++..++.... ..+ +++...... +-. +.-++-+
T Consensus 140 ~~~~~li~g~~~Dl~---~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~~~~~~~~~A~~---lG~-AlQltNI 212 (334)
T PLN02632 140 QPFRDMIEGMRMDLV---KSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYNAALA---LGI-ANQLTNI 212 (334)
T ss_pred HHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCccccchHHHHHHHHH---HHH-HHHHHHH
Confidence 344667777654332 3456799998888877776666555545443321 011 122222111 111 1112233
Q ss_pred ccCccchhhHhhcCCC--cchhhHHHHcCCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q 010399 407 DDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPPLQWL 470 (511)
Q Consensus 407 ~NDI~S~k~E~~rGdv--~n~V~cyMke~gvS~EeA---------~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~ 470 (511)
+-||. ....+|-+ +.- .|.++|+|.++- ..-+..+++.+..-+.+..---..+|..+.
T Consensus 213 LRDv~---eD~~~GRvYLP~e---~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r 281 (334)
T PLN02632 213 LRDVG---EDARRGRVYLPQD---ELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASR 281 (334)
T ss_pred HHHHH---HHHhCCceeCCHH---HHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhH
Confidence 34553 33456653 222 367899998772 344555555555544443211134665544
No 42
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=22.68 E-value=1e+02 Score=29.08 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=22.7
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChh
Q 010399 429 YVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQ 468 (511)
Q Consensus 429 yMke~gvS~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~ 468 (511)
-|.+.|.|. .+|+..|++.||+ .+.+|++-|+|
T Consensus 126 ~~~~~Gks~----~eIR~~ID~kYk~---g~~~pTpTp~P 158 (158)
T PF13798_consen 126 QMYQEGKSP----KEIRQYIDEKYKE---GYAKPTPTPMP 158 (158)
T ss_pred HHHHcCCCH----HHHHHHHHHHHHh---CCCCCCCCCCC
Confidence 355556654 4588999999974 47778776654
No 43
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=21.46 E-value=2.9e+02 Score=27.27 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHhccccCccC-HHHHHHHHHHHHHhCcccC--cHHHHHHHHHHHHhhccCCCCCCCCCCCCch
Q 010399 46 TEVEKRFETLKAEIEKLLVSNNTAWKT-LEEIVAIVNQLQRLGVAYH--FENEIKEALQTIYDSHVNGNCDVNYDHNNDL 122 (511)
Q Consensus 46 ~~~~~~~~~Lk~eVr~~l~~~~~~~~d-~~~~L~lID~lqrLGi~~h--Fe~EI~~~L~~i~~~~~~~~~~~~~~~~~dL 122 (511)
+....+.++++.-+|.|..+.. + ......+++.|+.||=..- .+.+|..+|...= .-+
T Consensus 12 ~~~~~~l~Kl~K~~k~~~~~g~----~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~---------------~~l 72 (215)
T cd07604 12 EGDRVGLQKLKKAVKAIHNSGL----AHVENELQFAEALEKLGSKALSREEEDLGAAFLKFS---------------VFT 72 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHH---------------HHH
Confidence 3456788888889988886543 3 4468899999999993221 2335777764431 224
Q ss_pred HHHHHHHHHHhhcCcccchhhhhccccc
Q 010399 123 YIVALRFRLLRQHGYKVSADIFKKFRDE 150 (511)
Q Consensus 123 ~~~al~FRLLRqhGy~VS~DvF~~F~d~ 150 (511)
..++=.+-.|++|=-++-...+.+|..+
T Consensus 73 ~El~~~~~~L~~~~~~~i~~pL~~f~k~ 100 (215)
T cd07604 73 KELAALFKNLMQNLNNIIMFPLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667788887777777788888755
No 44
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=21.20 E-value=8.3e+02 Score=24.37 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhcc
Q 010399 329 EAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDD 408 (511)
Q Consensus 329 k~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~N 408 (511)
+.+.+++.++... ......+|++|+......+.|+...+++..++.+.. +........-..+. ++-++-
T Consensus 86 ~~~~~li~~~~~D---l~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g~~~~----~~~~~A~~lG~AlQ----ltniLR 154 (266)
T TIGR03464 86 EPFLDLLDAFRQD---VVVTRYATWAELLDYCRYSANPVGRLVLDLYGASDP----ENVALSDAICTALQ----LINFWQ 154 (266)
T ss_pred HHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcCCCCh----hHHHHHHHHHHHHH----HHHHHH
Confidence 3445566665322 223456799998888888777776666555543222 22222111122222 222334
Q ss_pred CccchhhHhhcCCC--cchhhHHHHcCCCCHHHHH---------HHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q 010399 409 DVHTYKVEQERGDA--PSSVECYVQQYGVSEEEAC---------NKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSL 474 (511)
Q Consensus 409 DI~S~k~E~~rGdv--~n~V~cyMke~gvS~EeA~---------~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~l 474 (511)
|+.- ...+|-+ +. =.|.++|+|.|+-. .-+..++..+..-+.+..---..+|..+.-.++
T Consensus 155 Dl~e---D~~~gR~YLP~---~~l~~~Gv~~edl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~ 225 (266)
T TIGR03464 155 DVGV---DYRKGRVYLPR---DDLARFGVSEEDLAAGRATPALRELMAFEVSRTRALLDRGAPLAARVDGRLGLELA 225 (266)
T ss_pred hhHH---HHhcCCccCCH---HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhhHHHH
Confidence 5532 2334543 32 23678999876532 334445544444443332112346655444433
No 45
>PRK10581 geranyltranstransferase; Provisional
Probab=21.17 E-value=5.5e+02 Score=26.45 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCc
Q 010399 333 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 410 (511)
Q Consensus 333 ~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI 410 (511)
.++.+-..+..|.. ..+|.++|++....=+|..+..+. ..| ++.. -+++..+. ..++-+..++..=+.||+
T Consensus 153 ~l~~GQ~ld~~~~~--~~~~~~~y~~i~~~KTa~L~~~~~-~~gailag~-~~~~~~~~---l~~~g~~lG~aFQI~DDi 225 (299)
T PRK10581 153 GMCGGQALDLEAEG--KQVPLDALERIHRHKTGALIRAAV-RLGALSAGD-KGRRALPV---LDRYAESIGLAFQVQDDI 225 (299)
T ss_pred hhhHhhHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHH-HHHHHHcCC-CcHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34455555556643 368999999876654444433222 222 1221 12334443 356777788888889999
Q ss_pred cchhhH-hh----------cCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 411 HTYKVE-QE----------RGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 411 ~S~k~E-~~----------rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
..+... .. .|.. +.+.+| ..|.|.+.+++.++.+.+.+..
T Consensus 226 lD~~g~~~~~GK~~g~Dl~~gk~-T~p~l~------~~e~a~~~a~~~~~~A~~~l~~ 276 (299)
T PRK10581 226 LDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLDQ 276 (299)
T ss_pred ccccCChHHHCCCcchhhhcCCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 887432 22 2332 444333 2478888999999998877655
No 46
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=20.90 E-value=1.4e+02 Score=22.86 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=31.7
Q ss_pred ccCccchhhHhhcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 010399 407 DDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWM 453 (511)
Q Consensus 407 ~NDI~S~k~E~~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk 453 (511)
.||+-+...|+..--| -=|.-.|. .|+|.-||+..|...|.+.-+
T Consensus 2 ~~~lp~LtHeeQQ~Av-E~Iq~LMa-qGmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 2 FNDLPSLTHEEQQQAV-ERIQELMA-QGMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred CCCCCCCCHHHHHHHH-HHHHHHHH-hcccHHHHHHHHHHHHHHHHH
Confidence 3677777776665333 33555675 699999999999988886553
Done!