Query 010399
Match_columns 511
No_of_seqs 237 out of 908
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 3E-152 1E-156 1234.9 49.3 482 14-511 16-554 (554)
2 3m00_A Aristolochene synthase; 100.0 1E-151 4E-156 1229.5 49.3 480 15-511 12-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 1E-150 5E-155 1223.4 44.7 481 18-510 13-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 1E-146 4E-151 1197.0 48.9 483 19-510 1-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 3E-146 9E-151 1194.1 43.7 483 18-510 4-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 2E-145 7E-150 1190.9 40.2 478 16-510 31-569 (569)
7 3p5p_A Taxadiene synthase; cla 100.0 3E-128 1E-132 1081.6 43.3 436 72-511 245-756 (764)
8 3sdr_A Alpha-bisabolene syntha 100.0 3E-128 1E-132 1088.2 41.2 436 72-511 297-817 (817)
9 3s9v_A Abietadiene synthase, c 100.0 1E-127 4E-132 1079.8 43.2 434 72-510 269-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 5.1E-92 1.7E-96 782.0 31.3 400 49-510 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 9.1E-37 3.1E-41 312.9 12.3 195 255-459 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 5.7E-36 2E-40 301.7 13.4 187 257-459 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 2.4E-34 8.4E-39 292.8 13.5 190 254-459 24-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 1.7E-33 5.9E-38 294.8 13.0 161 293-459 152-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 99.9 1.2E-26 4.2E-31 246.4 12.3 153 300-459 237-390 (433)
16 1yyq_A Trichodiene synthase; t 99.0 5.8E-10 2E-14 116.2 8.9 144 308-457 131-275 (374)
17 3sdr_A Alpha-bisabolene syntha 97.5 2.2E-05 7.6E-10 89.0 2.3 48 16-64 21-68 (817)
18 3lmd_A Geranylgeranyl pyrophos 80.1 9.9 0.00034 38.9 10.9 103 323-433 161-275 (360)
19 3ipi_A Geranyltranstransferase 75.3 12 0.00042 37.0 9.7 141 323-479 128-278 (295)
20 3rmg_A Octaprenyl-diphosphate 67.0 32 0.0011 34.6 10.8 86 323-414 134-220 (334)
21 3mzv_A Decaprenyl diphosphate 66.9 62 0.0021 32.6 12.9 85 324-414 141-226 (341)
22 1rtr_A Geranyltranstransferase 66.8 22 0.00074 35.3 9.3 112 332-457 148-271 (301)
23 2ftz_A Geranyltranstransferase 66.2 49 0.0017 32.5 11.7 121 323-457 135-264 (284)
24 3oyr_A Trans-isoprenyl diphosp 66.0 42 0.0014 33.9 11.4 86 323-415 152-239 (345)
25 3m0g_A Farnesyl diphosphate sy 61.6 36 0.0012 33.7 9.8 111 332-457 147-269 (297)
26 1wy0_A Geranylgeranyl pyrophos 59.2 54 0.0019 32.9 10.8 83 326-414 141-224 (342)
27 3p8l_A Geranyltranstransferase 58.4 43 0.0015 33.3 9.7 110 333-457 157-279 (302)
28 2h8o_A Geranyltranstransferase 58.1 46 0.0016 33.5 9.9 111 333-457 193-315 (335)
29 3ts7_A Geranyltranstransferase 58.0 59 0.002 32.6 10.7 110 333-456 159-281 (324)
30 3lsn_A Geranyltranstransferase 57.2 56 0.0019 32.4 10.3 110 334-456 154-275 (304)
31 3pko_A Geranylgeranyl pyrophos 52.4 1.1E+02 0.0039 30.5 11.8 98 327-432 148-258 (334)
32 3p8r_A Geranyltranstransferase 52.1 40 0.0014 33.4 8.3 111 333-457 159-282 (302)
33 4f62_A Geranyltranstransferase 51.6 71 0.0024 31.9 10.1 110 334-457 153-275 (317)
34 4dhd_A Polyprenyl synthetase; 48.0 67 0.0023 32.6 9.3 87 323-414 133-231 (358)
35 3acx_A Dehydrosqualene synthas 47.7 1.6E+02 0.0053 28.6 11.8 126 329-470 108-244 (293)
36 3apz_A Geranyl diphosphate syn 47.4 73 0.0025 32.0 9.5 86 324-415 155-241 (348)
37 1rqj_A Geranyltranstransferase 41.9 1.1E+02 0.0037 30.1 9.6 111 333-457 153-276 (299)
38 3npk_A Geranyltranstransferase 41.8 1.5E+02 0.0051 29.1 10.5 112 332-457 145-266 (291)
39 1wmw_A Geranylgeranyl diphosph 40.8 2.5E+02 0.0084 27.8 12.2 84 323-414 131-218 (330)
40 3uca_A Geranyltranstransferase 40.6 97 0.0033 31.0 9.1 111 333-457 181-304 (324)
41 3lom_A Geranyltranstransferase 39.2 1.5E+02 0.0052 29.3 10.2 112 333-456 159-282 (313)
42 3pde_A Farnesyl-diphosphate sy 37.3 1.1E+02 0.0036 30.5 8.7 109 334-457 157-278 (309)
43 3llw_A Geranyltranstransferase 36.7 62 0.0021 32.2 6.9 112 332-456 159-280 (311)
44 1pd3_A Nonstructural protein N 35.4 31 0.0011 25.4 3.1 33 50-86 16-48 (58)
45 3nf2_A Putative polyprenyl syn 35.3 1.4E+02 0.0047 30.2 9.3 84 324-414 145-230 (352)
46 2j1p_A Geranylgeranyl pyrophos 34.6 34 0.0012 33.7 4.5 107 335-457 163-272 (293)
47 3s9v_A Abietadiene synthase, c 32.8 16 0.00055 41.3 1.9 40 24-64 5-45 (785)
48 1c07_A Protein (epidermal grow 28.9 1.4E+02 0.0049 23.3 6.7 61 72-142 25-86 (95)
49 2kw6_A Cyclin-dependent kinase 25.4 62 0.0021 24.8 3.4 44 300-344 12-61 (65)
50 1qjt_A EH1, epidermal growth f 24.0 1.6E+02 0.0053 23.5 6.1 63 73-145 27-89 (99)
51 2e8v_A Geranylgeranyl pyrophos 23.6 1.1E+02 0.0038 30.6 6.1 84 326-415 135-221 (340)
52 3fau_A NEDD4-binding protein 2 23.5 62 0.0021 25.3 3.4 23 433-455 6-28 (82)
53 3kra_B Geranyl diphosphate syn 22.6 69 0.0024 31.2 4.2 92 334-456 151-244 (274)
54 3aqb_B Component B of hexapren 22.1 1.5E+02 0.0052 29.3 6.8 86 324-414 132-217 (325)
55 2m1l_A Cyclin-dependent kinase 20.3 1.1E+02 0.0037 23.7 3.9 45 299-343 15-64 (69)
56 2q80_A Geranylgeranyl pyrophos 20.1 1.7E+02 0.0057 28.8 6.5 83 323-414 112-195 (301)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=3.3e-152 Score=1234.89 Aligned_cols=482 Identities=46% Similarity=0.840 Sum_probs=442.2
Q ss_pred CcccccCCCCCCCCCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHHhc-cccCccCHHHHHHHHHHHHHhCcccCc
Q 010399 14 TKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHF 92 (511)
Q Consensus 14 ~~~~~~r~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~-~~~~~~d~~~~L~lID~lqrLGi~~hF 92 (511)
++.++.||+||||||+|||+||++ + +++..+.+.+|+++||++||+||.. .+ |++++|+|||+||||||+|||
T Consensus 16 ~~~~~~R~~~~~~ps~W~~~fl~~-~-~~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~l~lID~lqrLGi~~hF 89 (554)
T 3g4d_A 16 SNKDEMRPKADFQPSIWGDLFLNC-P-DKNIDAETEKRHQQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLGVSYHF 89 (554)
T ss_dssp ---------CCCCCCTTTTTTTSC-C-C---CHHHHHHHHHHHHHHHHHHHSCCS----SHHHHHHHHHHHHHTTCGGGC
T ss_pred ccCCCCCCCCCCCccccccccccC-C-CchhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhh
Confidence 345568999999999999999997 4 3455678999999999999999975 45 899999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhcccccccccccccccchhhhhhhhhhc
Q 010399 93 ENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEAS 172 (511)
Q Consensus 93 e~EI~~~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS 172 (511)
++||+++|++||++ ++ .. ..|||+|||+|||||||||+||||||++|+|++|+|++++.+||+|||+|||||
T Consensus 90 ~~EI~~~L~~i~~~--~~-----~~-~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs 161 (554)
T 3g4d_A 90 TKEIEDELENIYHN--NN-----DA-ENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQAS 161 (554)
T ss_dssp HHHHHHHHHHHHHS--CC-----CT-TCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cC-----CC-CCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHH
Confidence 99999999999985 21 11 369999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccHHHHHHHHHHHHHHhHhhcCCCchHHHHHHhccCccccCcchHHHHhhHHHhhcCCccccHHHHHHHHHhhH
Q 010399 173 YLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN 252 (511)
Q Consensus 173 ~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn 252 (511)
||++|||+|||||+.||++||++.+++++++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||
T Consensus 162 ~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn 240 (554)
T 3g4d_A 162 YLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ESHNKALLEFAKIDFN 240 (554)
T ss_dssp TTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TTCCHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-ccccHHHHHHHHHHHH
Confidence 999999999999999999999998888888999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccc------------------------------------------------
Q 010399 253 LLQALHRIELSEISRWWKDIDFATKLPFARDR------------------------------------------------ 284 (511)
Q Consensus 253 ~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR------------------------------------------------ 284 (511)
+||++||+||++|+||||++||+++|||||||
T Consensus 241 ~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~ 320 (554)
T 3g4d_A 241 MLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELI 320 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 99999999999999999999999999999999
Q ss_pred --------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Q 010399 285 --------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC 356 (511)
Q Consensus 285 --------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEY 356 (511)
||++++++||+|||+||++|+|++|||++++.++|+.++++|++++|+++++||++||+|+++||+||+|||
T Consensus 321 ~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEY 400 (554)
T 3g4d_A 321 PYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEF 400 (554)
T ss_dssp HHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 999999999999999999999999999999998544389999999999999999999999999999999999
Q ss_pred HhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCCCC
Q 010399 357 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVS 436 (511)
Q Consensus 357 l~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~gvS 436 (511)
|+||.+|+|+++++++++++||+. +|+++++|++++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|
T Consensus 401 l~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvS 479 (554)
T 3g4d_A 401 KANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVT 479 (554)
T ss_dssp HHHHGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCC
T ss_pred HhccceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhcccCCC
Q 010399 437 EEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 511 (511)
Q Consensus 437 ~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~Pi~~ 511 (511)
+|||+++++++|+++||+||++|++++++|++|+++++|+||+++|||+++||||.|+..||++|++||++|||+
T Consensus 480 eEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 480 AQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999988999999999999999999999999999999778999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.2e-151 Score=1229.51 Aligned_cols=480 Identities=41% Similarity=0.781 Sum_probs=453.2
Q ss_pred cccccCCCCCCCCCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHHhc-cccCccCHHHHHHHHHHHHHhCcccCcH
Q 010399 15 KADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHFE 93 (511)
Q Consensus 15 ~~~~~r~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~-~~~~~~d~~~~L~lID~lqrLGi~~hFe 93 (511)
+.++.||+||||||+|||+||++++ +++..+.+.+|+++||++||+||.+ .+ +++++|+|||+||||||+|||+
T Consensus 12 ~~~~~R~~~~~~ps~W~d~fl~~~~-~~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~L~lID~lqrLGi~~hF~ 86 (550)
T 3m00_A 12 EEEIVRPVADFSPSLWGDQFLSFSI-KNQVAEKYAKEIEALKEQTRNMLLATGM----KLADTLNLIDTIERLGISYHFE 86 (550)
T ss_dssp ----CCCCCCCCCCTTTTTTSCCCC-CHHHHHHHHHHHHHHHHHHHHHHTCSSC----CHHHHHHHHHHHHHTTCGGGCH
T ss_pred ccccCCCCCCCCcccccccccccCC-cchhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhhH
Confidence 3456899999999999999999754 3455667899999999999999975 45 8999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhcccccccccccccccchhhhhhhhhhcc
Q 010399 94 NEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASY 173 (511)
Q Consensus 94 ~EI~~~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~ 173 (511)
+||+++|++||++|.. ..|||+|||+|||||||||+||||||++|+|++|+|++++.+||+|||+||||||
T Consensus 87 ~EI~~~L~~i~~~~~~---------~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~ 157 (550)
T 3m00_A 87 KEIDDILDQIYNQNSN---------CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 157 (550)
T ss_dssp HHHHHHHHHHHHHCCC---------CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccc---------CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHh
Confidence 9999999999998722 3699999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccHHHHHHHHHHHHHHhHhhcCCCchHHHHHHhccCccccCcchHHHHhhHH-HhhcCCccccHHHHHHHHHhhH
Q 010399 174 LRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFN 252 (511)
Q Consensus 174 l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~L~~~V~~aL~~P~~~~~~Rlear~yI~-~Y~~~~~~~n~~lLelAKlDFn 252 (511)
|++|||+|||||+.||++||++.+++++++|+++|+|||++|+|+++||||||+||+ +|+++ +++|++||||||||||
T Consensus 158 l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~-~~~n~~lLelAkldFn 236 (550)
T 3m00_A 158 VRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKE-QSKNNVLLRFAKLDFN 236 (550)
T ss_dssp TCCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGC-TTCCHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhccc-ccccHHHHHHHHHHHH
Confidence 999999999999999999999988878889999999999999999999999999999 99999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccc------------------------------------------------
Q 010399 253 LLQALHRIELSEISRWWKDIDFATKLPFARDR------------------------------------------------ 284 (511)
Q Consensus 253 ~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR------------------------------------------------ 284 (511)
+||++||+||++|+||||++||+++|||||||
T Consensus 237 ~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~ 316 (550)
T 3m00_A 237 LLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELE 316 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHH
Confidence 99999999999999999999999999999999
Q ss_pred --------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Q 010399 285 --------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC 356 (511)
Q Consensus 285 --------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEY 356 (511)
||++++++||+|||+||++|+|++||||+++.++|+.++++|++++|+++++||++||+|+++||+||+|||
T Consensus 317 ~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEY 396 (550)
T 3m00_A 317 AYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEY 396 (550)
T ss_dssp HHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 999999999999999999999999999999988544389999999999999999999999999999999999
Q ss_pred HhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCCCC
Q 010399 357 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVS 436 (511)
Q Consensus 357 l~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~gvS 436 (511)
|+||.+|+|++++++++++|| +. +|+++++|+.++|+|++++++|+||+|||+||++|++||+++|+|+|||+|+|+|
T Consensus 397 l~na~vSsg~~~l~~~~f~g~-~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvS 474 (550)
T 3m00_A 397 LSNALATTTYYLLATTSYLGM-KS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIS 474 (550)
T ss_dssp HHHHTGGGSHHHHHHHHHHTC-TT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCC
T ss_pred HHhccccchHHHHHHHHHHcC-CC-CcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCC
Confidence 999999999999999999888 77 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccC-CCCCCCchhHHHHHHhhhcccCCC
Q 010399 437 EEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTKDRIASLLVDPLPM 511 (511)
Q Consensus 437 ~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~aR~~~~~Y~~~-Dg~t~~~~~~k~~I~~ll~~Pi~~ 511 (511)
+|+|+++++++|+++||+||++|++++++|++|+++++|+||+++|||+++ ||||.|+..||++|++||++|||+
T Consensus 475 eEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 475 TKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999988999999999999999999999998 999999768999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1.5e-150 Score=1223.38 Aligned_cols=481 Identities=35% Similarity=0.608 Sum_probs=447.8
Q ss_pred ccCCCCCCCCCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHH
Q 010399 18 VNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIK 97 (511)
Q Consensus 18 ~~r~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~ 97 (511)
..||+||||||+|||+||++++ +++..+.+.+|+++||++||+||.+.++ +++++|+|||+||||||+|||++||+
T Consensus 13 ~~~~~~~~~ps~W~~~fl~~~~-~~~~~~~~~~~~e~Lk~eVr~~l~~~~~---~~~~~L~lID~lqRLGi~~hF~~EI~ 88 (555)
T 3n0f_A 13 EARRSADYEPNSWDYDFLLSSD-TDESIEVYKDKAKKLEAEVRREINNEKA---EFLTLLELIDNVQRLGLGYRFESDIR 88 (555)
T ss_dssp ----CCCCCCCTTCHHHHTCC------CHHHHHHHHHHHHHHHHHHHCTTS---CHHHHHHHHHHHHHTTCGGGSHHHHH
T ss_pred ccCCCCCCCcccccccccccCC-cchhhHHHHHHHHHHHHHHHHHHHhccc---CHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 3699999999999999999754 3455678999999999999999975321 69999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhcccccccccccccccchhhhhhhhhhcccccC
Q 010399 98 EALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQ 177 (511)
Q Consensus 98 ~~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~ 177 (511)
++|++||+. .++++ +. ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|
T Consensus 89 ~~L~~i~~~-~~~~~---~~-~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~ 163 (555)
T 3n0f_A 89 RALDRFVSS-GGFDG---VT-KTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALE 163 (555)
T ss_dssp HHHHHHHHT-CHHHH---HT-TTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhh-ccccc---cc-cCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccC
Confidence 999999973 00000 11 36999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHhHhh-cCCCchHHHHHHhccCccccCcchHHHHhhHHHhhcCCccccHHHHHHHHHhhHHHHH
Q 010399 178 GENILEEACEFSRKHLKSLLS-HLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQA 256 (511)
Q Consensus 178 gE~iLdeA~~Ft~~~L~~~~~-~~~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn~~Q~ 256 (511)
||+|||||+.||++||++.+. .++++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||+||+
T Consensus 164 gE~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~-~~~n~~lLelAKlDFN~~Q~ 242 (555)
T 3n0f_A 164 GENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKK-EDANQVLLELAILDYNMIQS 242 (555)
T ss_dssp TCHHHHHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhccc-ccccHHHHHHHHHhHHHHHH
Confidence 999999999999999998765 5678899999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccc----------------------------------------------------
Q 010399 257 LHRIELSEISRWWKDIDFATKLPFARDR---------------------------------------------------- 284 (511)
Q Consensus 257 ~hq~EL~~lsrWwk~~~l~~~L~faRdR---------------------------------------------------- 284 (511)
+||+||++|+||||++||+++|||||||
T Consensus 243 ~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ 322 (555)
T 3n0f_A 243 VYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTD 322 (555)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 9999999999999999999999999999
Q ss_pred ----ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhh
Q 010399 285 ----WEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVEN 359 (511)
Q Consensus 285 ----WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~ 359 (511)
||++++++||+|||+||.+|+|++|||++++.+ ||+ ++++|++++|+++++||++||+|+++||+||+||||+|
T Consensus 323 ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~-~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~n 401 (555)
T 3n0f_A 323 AVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGE-NILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGN 401 (555)
T ss_dssp HHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHh
Confidence 999999999999999999999999999999988 777 99999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCCCCHHH
Q 010399 360 STMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEE 439 (511)
Q Consensus 360 ~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~gvS~Ee 439 (511)
|.+|+|+++++++++++||+. +|+++++|+.++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+
T Consensus 402 a~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEe 480 (555)
T 3n0f_A 402 AWKSSSGPLQLIFAYFAVVQN-IKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEEL 480 (555)
T ss_dssp HHHHTSHHHHHHHHHHHHCSS-CCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHH
T ss_pred cccchhHHHHHHHHHHhcCCC-CCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhcccCC
Q 010399 440 ACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 510 (511)
Q Consensus 440 A~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~Pi~ 510 (511)
|+++|+++|+++||+||++|++++++|++|+++++|+||+++|||+++||||.|+..||++|++||++|||
T Consensus 481 A~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 481 ATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998899999999999999999999999999999877899999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.2e-146 Score=1196.96 Aligned_cols=483 Identities=35% Similarity=0.607 Sum_probs=460.1
Q ss_pred cCCCCCCCCCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHHH
Q 010399 19 NRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKE 98 (511)
Q Consensus 19 ~r~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~ 98 (511)
.||++|||||+|||+||++. .+++..+.+.+++++||++||+|+.... |++++|+|||+||||||+|||++||++
T Consensus 1 ~r~~~~~~ps~W~~~fl~~~-~~~~~~~~~~~~~~~Lk~~V~~~~~~~~----d~~~~l~liD~lqrLGi~~hF~~EI~~ 75 (543)
T 2ong_A 1 MRRSGNYNPSRWDVNFIQSL-LSDYKEDKHVIRASELVTLVKMELEKET----DQIRQLELIDDLQRMGLSDHFQNEFKE 75 (543)
T ss_dssp CCCCCCCCCCSSCHHHHHHC-CCSSCSTHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHTTGGGTTHHHHHH
T ss_pred CCCCCCCCCCcCCcccccCC-CchhhhhHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHhCCchhhhHHHHHH
Confidence 38999999999999999864 4445566889999999999999998766 899999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhcccccccccccccccchhhhhhhhhhcccccCC
Q 010399 99 ALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQG 178 (511)
Q Consensus 99 ~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~g 178 (511)
+|++||++|..+++..... ..|||+|||+|||||||||+||||||++|||++|+|++++++||+|||||||||||++||
T Consensus 76 ~L~~i~~~~~~~~~~~~~~-~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~g 154 (543)
T 2ong_A 76 ILSSIYLDHHYYKNPFPKE-ERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEG 154 (543)
T ss_dssp HHHHHHHTTTCCCSSCCCC-CCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHhhcccccccccc-cCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCC
Confidence 9999999885443221100 369999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHhHhhc-C-CCchHHHHHHhccCccccCcchHHHHhhHHHhhcCCccccHHHHHHHHHhhHHHHH
Q 010399 179 ENILEEACEFSRKHLKSLLSH-L-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQA 256 (511)
Q Consensus 179 E~iLdeA~~Ft~~~L~~~~~~-~-~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn~~Q~ 256 (511)
|+|||||+.||++||++.+++ + +++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||+||+
T Consensus 155 E~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn~~Q~ 233 (543)
T 2ong_A 155 ETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKR-PDMNPVVLELAILDLNIVQA 233 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccC-ccccHHHHHHHHHhHHHHHH
Confidence 999999999999999999886 5 78999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccc----------------------------------------------------
Q 010399 257 LHRIELSEISRWWKDIDFATKLPFARDR---------------------------------------------------- 284 (511)
Q Consensus 257 ~hq~EL~~lsrWwk~~~l~~~L~faRdR---------------------------------------------------- 284 (511)
+||+||++|+||||++||.++|||||||
T Consensus 234 ~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ 313 (543)
T 2ong_A 234 QFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTD 313 (543)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 9999999999999999999889999999
Q ss_pred ----ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhh
Q 010399 285 ----WEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVEN 359 (511)
Q Consensus 285 ----WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~ 359 (511)
||.+++++||+|||+||.+|+++++||++++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+|
T Consensus 314 ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~ 392 (543)
T 2ong_A 314 LIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGV-NVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLEN 392 (543)
T ss_dssp HHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhc
Confidence 999999999999999999999999999999988 777 99999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCCCCHHH
Q 010399 360 STMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEE 439 (511)
Q Consensus 360 ~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~gvS~Ee 439 (511)
|.+|+|+++++++++++||.. +|+++++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+
T Consensus 393 ~~vS~g~~~l~~~~~~~~g~~-~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~ee 471 (543)
T 2ong_A 393 SWQSISGPCMLTHIFFRVTDS-FTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE 471 (543)
T ss_dssp HHHHTCHHHHHHHHHHHHSSC-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHH
T ss_pred ccccchHHHHHHHHHHHcCCC-CCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhcccCC
Q 010399 440 ACNKIKGMVEIEWMNINEEI-QDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 510 (511)
Q Consensus 440 A~~~i~~~Ie~~wk~ln~e~-l~~~~vp~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~Pi~ 510 (511)
|+++++++|+++||+||++| ++++++|++|+++++|+||+++++|+++||||.|+..||++|++||++|||
T Consensus 472 A~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 472 ARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999999999999 998889999999999999999999999999999977899999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=2.7e-146 Score=1194.13 Aligned_cols=483 Identities=36% Similarity=0.652 Sum_probs=435.7
Q ss_pred ccCCCCCCCCCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHH
Q 010399 18 VNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIK 97 (511)
Q Consensus 18 ~~r~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~ 97 (511)
+.||++|||||+|||+||+ |+.+++..+.+.+++++||++||+|+.+.. |++++|+|||+||||||+|||++||+
T Consensus 4 ~~r~~~~~~ps~W~~~fl~-s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~----d~~~~l~lvD~lqrLGi~~hF~~EI~ 78 (549)
T 1n1b_A 4 QIRRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKM----EPVQQLELIHDLKYLGLSDFFQDEIK 78 (549)
T ss_dssp -----------CCCHHHHH-HCCCSTTSHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred cCCCCCCCCCCCCCCCccc-CCCcchhhhHHHHHHHHHHHHHHHHHhccc----CHHHHHHhHHHHHhCCchhhhHHHHH
Confidence 4699999999999999995 665556667899999999999999998766 89999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhccccccc-ccccccccchhhhhhhhhhccccc
Q 010399 98 EALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRV 176 (511)
Q Consensus 98 ~~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~G-~F~~~l~~Dv~glLsLYeAS~l~~ 176 (511)
++|++||++|..+. .. .....|||+|||+|||||||||+||||||++|+|++| +|++++++||+|||||||||||++
T Consensus 79 ~~L~~i~~~~~~~~-~~-~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~ 156 (549)
T 1n1b_A 79 EILGVIYNEHKCFH-NN-EVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLR 156 (549)
T ss_dssp HHHHHHHHHCHHHH-HC-CCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhcccc-cc-ccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCC
Confidence 99999998752110 00 0003699999999999999999999999999999999 999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHhHhhc---C-CCchHHHHHHhccCccccCcchHHHHhhHHHhhcCCccccHHHHHHHHHhhH
Q 010399 177 QGENILEEACEFSRKHLKSLLSH---L-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN 252 (511)
Q Consensus 177 ~gE~iLdeA~~Ft~~~L~~~~~~---~-~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn 252 (511)
|||+|||||+.||++||++.+++ + +++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||
T Consensus 157 ~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn 235 (549)
T 1n1b_A 157 KGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARR-PDMNPLIFELAKLNFN 235 (549)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhccc-ccccHHHHHHHHHhHH
Confidence 99999999999999999998875 5 78899999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccc------------------------------------------------
Q 010399 253 LLQALHRIELSEISRWWKDIDFATKLPFARDR------------------------------------------------ 284 (511)
Q Consensus 253 ~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR------------------------------------------------ 284 (511)
+||++||+||++|+||||++||.++|||||||
T Consensus 236 ~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~ 315 (549)
T 1n1b_A 236 IIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELE 315 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 99999999999999999999998889999999
Q ss_pred --------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Q 010399 285 --------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEE 355 (511)
Q Consensus 285 --------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleE 355 (511)
||.+++++||+|||+||.+|+++++||++++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||
T Consensus 316 ~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eE 394 (549)
T 1n1b_A 316 LFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF-FCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDE 394 (549)
T ss_dssp HHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999999999999999999999999999988 777 9999999999999999999999999999999999
Q ss_pred HHhhcccccchhhHHHHHHHhcCCCcCcHHH-HhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCC
Q 010399 356 CVENSTMSSGYPMLAVEALVGLEDMAITKRA-LDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG 434 (511)
Q Consensus 356 Yl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~-~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~g 434 (511)
||+||.+|+|+++++++++++||.. +|+++ ++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+|+|
T Consensus 395 Yl~~~~vS~g~~~l~~~~~~~~g~~-lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g 473 (549)
T 1n1b_A 395 YLNIAKISVASPAIISPTYFTFANA-SHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETN 473 (549)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTSTTC-CCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHC
T ss_pred HHHhcccchhHHHHHHHHHHHcCCC-CcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcC
Confidence 9999999999999999999999999 99999 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhcccCC
Q 010399 435 VSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 510 (511)
Q Consensus 435 vS~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~Pi~ 510 (511)
+|+|||+++++++|+++||+||++|++++++|++|+++++|+||+++|||+++||||.|+..||++|++||++|||
T Consensus 474 ~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 474 ASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999998899999999999999999999999999999977899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2e-145 Score=1190.90 Aligned_cols=478 Identities=35% Similarity=0.592 Sum_probs=413.0
Q ss_pred ccccCCCCCCCCCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHH
Q 010399 16 ADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENE 95 (511)
Q Consensus 16 ~~~~r~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~~~~~~~d~~~~L~lID~lqrLGi~~hFe~E 95 (511)
.+..||++|||||+|||+||++. .+++..+.+.+++++||++||+|+.... |++++|+|||+||||||+|||++|
T Consensus 31 ~~~~r~~~~~~ps~W~~~fl~~~-~~~~~~~~~~~~~~~Lk~~Vr~~~~~~~----d~~~~l~lID~lqrLGi~~hFe~E 105 (569)
T 2j5c_A 31 KDRWIRTGGYQPTLWDFSTIQSF-DSEYKEEKHLMRAAGMIDQVKMMLQEEV----DSIRRLELIDDLRRLGISCHFERE 105 (569)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCGGGGHHH
T ss_pred ccccCCCCCCCCCcCCcccccCC-CchhhhHHHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHHHhCCchhhhHHH
Confidence 44579999999999999999854 4455556789999999999999998766 899999999999999999999999
Q ss_pred HHHHHHHHH-hhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhccccccc-ccccccccchhhhhhhhhhcc
Q 010399 96 IKEALQTIY-DSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASY 173 (511)
Q Consensus 96 I~~~L~~i~-~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~G-~F~~~l~~Dv~glLsLYeAS~ 173 (511)
|+++|++|| +.+.. . ..|||+|||+|||||||||+||||||++|||++| +|++++++||+||||||||||
T Consensus 106 I~~~L~~i~~~~~~~-----~---~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~ 177 (569)
T 2j5c_A 106 IVEILNSKYYTNNEI-----D---ERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASF 177 (569)
T ss_dssp HHHHHHHHTTSSCCS-----C---TTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCc-----c---cCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHh
Confidence 999999999 76411 1 4699999999999999999999999999999999 999999999999999999999
Q ss_pred cccCCccHHHHHHHHHHHHHHhHhhcC-CCchHHHHHHhccCccccCcchHHHHhhHHHhhcCCccccHHHHHHHHHhhH
Q 010399 174 LRVQGENILEEACEFSRKHLKSLLSHL-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN 252 (511)
Q Consensus 174 l~~~gE~iLdeA~~Ft~~~L~~~~~~~-~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn 252 (511)
|++|||+|||||+.||++||++.++++ +++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||
T Consensus 178 l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn 256 (569)
T 2j5c_A 178 LSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRR-PDMNPTVLELAKLDFN 256 (569)
T ss_dssp TCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccC-ccccHHHHHHHHHhHH
Confidence 999999999999999999999988766 78899999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccc------------------------------------------------
Q 010399 253 LLQALHRIELSEISRWWKDIDFATKLPFARDR------------------------------------------------ 284 (511)
Q Consensus 253 ~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR------------------------------------------------ 284 (511)
+||++||+||++|+||||++||.++|||||||
T Consensus 257 ~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~ 336 (569)
T 2j5c_A 257 MVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQ 336 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 99999999999999999999999899999999
Q ss_pred --------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Q 010399 285 --------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEE 355 (511)
Q Consensus 285 --------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleE 355 (511)
||.+++++||+|||+||.+|+++++||++++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||
T Consensus 337 ~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eE 415 (569)
T 2j5c_A 337 LFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGF-DSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEE 415 (569)
T ss_dssp HHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999999999999999999999999999988 777 9999999999999999999999999999999999
Q ss_pred HHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCCC
Q 010399 356 CVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGV 435 (511)
Q Consensus 356 Yl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~gv 435 (511)
||+||.+|+|+++++++++++||.. +|+++++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+|+|+
T Consensus 416 Yl~~~~vSsg~~~l~~~~~~~~g~~-lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~ 494 (569)
T 2j5c_A 416 YMKNSWISIGGIPILSHLFFRLTDS-IEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNA 494 (569)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHSCSS-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------
T ss_pred HHhcccccchHHHHHHHHHHHcCCC-CCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCC
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccC-CCCCCCchhHHHHHHhhhcccCC
Q 010399 436 SEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTKDRIASLLVDPLP 510 (511)
Q Consensus 436 S~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~aR~~~~~Y~~~-Dg~t~~~~~~k~~I~~ll~~Pi~ 510 (511)
|+|+|+++++++|+++||+||++|++ +++|++|+++++|+||+++++|+++ ||||.|+..||++|++||++|||
T Consensus 495 s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 495 SEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999999999999999999999998 8899999999999999999999999 99999977899999999999997
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=3.2e-128 Score=1081.60 Aligned_cols=436 Identities=30% Similarity=0.539 Sum_probs=405.9
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhccC-CCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhccccc
Q 010399 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN-GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (511)
Q Consensus 72 d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~-~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~ 150 (511)
+++++|++||+||||||+|||++||+++|++||++|.+ |++..+.....||++|||+|||||||||+||||||++|+|+
T Consensus 245 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 324 (764)
T 3p5p_A 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDE 324 (764)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhcC
Confidence 78999999999999999999999999999999999854 33211000036999999999999999999999999999999
Q ss_pred ccccccc---cccchhhhhhhhhhcccccCCccHHHHHHHHHHHHHHhHhhc---CCCchHHHHHHhccCccccCcchHH
Q 010399 151 KGEFKAM---LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLE 224 (511)
Q Consensus 151 ~G~F~~~---l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~---~~~~L~~~V~~aL~~P~~~~~~Rle 224 (511)
+|+|+++ +.+||+|||||||||||++|||+|||||+.||++||++.++. ++++|+++|+|||++|||+++||||
T Consensus 325 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rle 404 (764)
T 3p5p_A 325 NGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLE 404 (764)
T ss_dssp TSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHHH
T ss_pred CCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHHH
Confidence 9999985 589999999999999999999999999999999999998762 5788999999999999999999999
Q ss_pred HHhhHHHhhcCCcc------------ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccccccccccc--------
Q 010399 225 ARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR-------- 284 (511)
Q Consensus 225 ar~yI~~Y~~~~~~------------~n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR-------- 284 (511)
||+||++|+++ ++ +|++||||||||||+||++||+||++|+||||++|+ .+|||||||
T Consensus 405 ar~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw~ 482 (764)
T 3p5p_A 405 ARSYIDSYDDN-YVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSS 482 (764)
T ss_dssp HHHHHHHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHHH
Confidence 99999999988 66 399999999999999999999999999999999999 699999999
Q ss_pred ----------------------------------------------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHc-
Q 010399 285 ----------------------------------------------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVN- 317 (511)
Q Consensus 285 ----------------------------------------------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k- 317 (511)
||++++++||||||+||.+|+|++|||++++.+
T Consensus 483 ~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~~ 562 (764)
T 3p5p_A 483 ATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKV 562 (764)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHH
Q 010399 318 KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKII 397 (511)
Q Consensus 318 ~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~ 397 (511)
+|+ ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++++++++++||+. +|+++++|+..+|+|+
T Consensus 563 ~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~-lt~e~~e~~~~~~~l~ 640 (764)
T 3p5p_A 563 QGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGEL-VKDDVVEKVHYPSNMF 640 (764)
T ss_dssp HSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSC-CCGGGHHHHSTTSHHH
T ss_pred cCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCC-CcHHHHhhhhhhHHHH
Confidence 888 99999999999999999999999999999999999999999999999999999999999 9999999966669999
Q ss_pred HHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCChhHHHHHHH
Q 010399 398 RSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQD-PNHPPLQWLLPSLN 475 (511)
Q Consensus 398 ~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~-gvS~EeA~~~i~~~Ie~~wk~ln~e~l~-~~~vp~~~~~~~lN 475 (511)
+++++|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++ ++++|++|+++++|
T Consensus 641 ~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~~n 720 (764)
T 3p5p_A 641 ELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFN 720 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHH
T ss_pred HHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 7999999999999999999999999997 77899999999999
Q ss_pred HhhhhhhhcccCCCCCCCchhHHHHHHhhhcccCCC
Q 010399 476 LARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 511 (511)
Q Consensus 476 ~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~Pi~~ 511 (511)
+||+++|||+++||||.|+.+||++|++||++||++
T Consensus 721 ~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 721 LRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp THHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 999999999999999998667999999999999974
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=3e-128 Score=1088.17 Aligned_cols=436 Identities=35% Similarity=0.605 Sum_probs=403.3
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhccC-CCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhccccc
Q 010399 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN-GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (511)
Q Consensus 72 d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~-~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~ 150 (511)
+++++|++||+||||||+|||++||+++|++||+.|.+ |++..+.....||++|||+|||||||||+||||||++|+|+
T Consensus 297 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 376 (817)
T 3sdr_A 297 DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDA 376 (817)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCC
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhhc
Confidence 78999999999999999999999999999999999854 33211000036999999999999999999999999999999
Q ss_pred cccccccc---ccchhhhhhhhhhcccccCCccHHHHHHHHHHHHHHhHhhc--------CCCchHHHHHHhccCccccC
Q 010399 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRG 219 (511)
Q Consensus 151 ~G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~--------~~~~L~~~V~~aL~~P~~~~ 219 (511)
+|+|++++ .+||+|||||||||||++|||+|||||+.||++||++.+.. ++++|+++|+|||++|||++
T Consensus 377 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~ 456 (817)
T 3sdr_A 377 NGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHAS 456 (817)
T ss_dssp --CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTC
T ss_pred CCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhcc
Confidence 99999965 69999999999999999999999999999999999998753 24789999999999999999
Q ss_pred cchHHHHhhHHHhhcCCcc------------ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccccccccccc---
Q 010399 220 MPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR--- 284 (511)
Q Consensus 220 ~~Rlear~yI~~Y~~~~~~------------~n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR--- 284 (511)
+||||||+||++|+++ ++ +|++||||||||||+||++||+||++|+||||++|| .+|||||||
T Consensus 457 l~Rlear~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve 534 (817)
T 3sdr_A 457 VPRVEAKRYCQVYRPD-YARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLE 534 (817)
T ss_dssp CHHHHHHHHHTTCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHH
T ss_pred ChHHHHHHHHHHhCcc-chhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHH
Confidence 9999999999999988 65 499999999999999999999999999999999999 699999999
Q ss_pred -----------------------------------------------------ccchhhhhCChhHHHHHHHHHHHHHHH
Q 010399 285 -----------------------------------------------------WEVVAANELPKYMQVCYFALLDVVKEM 311 (511)
Q Consensus 285 -----------------------------------------------------WD~~~~~~LPeymK~~f~al~~~~~ei 311 (511)
||++++++||||||+||.+|+|++|||
T Consensus 535 ~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~ 614 (817)
T 3sdr_A 535 FYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEV 614 (817)
T ss_dssp HHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999
Q ss_pred HHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhh-HHHHHHHhcCCCcCcHHHHhh
Q 010399 312 EDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPM-LAVEALVGLEDMAITKRALDW 389 (511)
Q Consensus 312 e~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~-~~~~~~~~mg~~~l~~e~~e~ 389 (511)
++++.+ ||+ ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++ ++++++++||+. +|+++++|
T Consensus 615 ~~~~~~~~g~-~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~-lt~e~~e~ 692 (817)
T 3sdr_A 615 AWEAEKEQGR-ELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQL-LSQEALEK 692 (817)
T ss_dssp HHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCC-CCHHHHHT
T ss_pred HHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCC-CCHHHHhc
Confidence 999988 788 99999999999999999999999999999999999999999999999 888889999999 99999999
Q ss_pred cc--chhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010399 390 AI--SVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPP 466 (511)
Q Consensus 390 ~~--~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~-gvS~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp 466 (511)
+. ++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|| |+|+|+|+++++++|+++||+||++|++++++|
T Consensus 693 ~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p 772 (817)
T 3sdr_A 693 VDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVP 772 (817)
T ss_dssp TCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred ccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 65 455999999999999999999999999999999999999999 799999999999999999999999999988999
Q ss_pred hhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhcccCCC
Q 010399 467 LQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 511 (511)
Q Consensus 467 ~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~Pi~~ 511 (511)
++|+++++|+||+++|||+++||||.|+.+||++|++||++|||+
T Consensus 773 ~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 773 FACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999778999999999999986
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.1e-127 Score=1079.78 Aligned_cols=434 Identities=33% Similarity=0.572 Sum_probs=406.7
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhccC-CCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhccccc
Q 010399 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN-GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (511)
Q Consensus 72 d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~-~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~ 150 (511)
+++++|++||+||||||+|||++||+++|++||++|.+ +++........||++|||+|||||||||+||||||++|+|+
T Consensus 269 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 348 (785)
T 3s9v_A 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDE 348 (785)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 78999999999999999999999999999999999854 32211000036999999999999999999999999999999
Q ss_pred cccccccc---ccchhhhhhhhhhcccccCCccHHHHHHHHHHHHHHhHhhc--------CCCchHHHHHHhccCccccC
Q 010399 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRG 219 (511)
Q Consensus 151 ~G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~--------~~~~L~~~V~~aL~~P~~~~ 219 (511)
+|+|++++ .+||+|||||||||||++|||+|||||+.||++||++.+.. ++++|+++|+|||++|||++
T Consensus 349 ~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~ 428 (785)
T 3s9v_A 349 NGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKS 428 (785)
T ss_dssp TSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGC
T ss_pred CCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccC
Confidence 99999876 69999999999999999999999999999999999998753 46889999999999999999
Q ss_pred cchHHHHhhHHHhhcCCccc------------cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccccccccccc---
Q 010399 220 MPRLEARQYISIYEADNSTR------------NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR--- 284 (511)
Q Consensus 220 ~~Rlear~yI~~Y~~~~~~~------------n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR--- 284 (511)
+||||||+||++|+++ +++ |++||||||||||+||++||+||++|+||||++|+ .+|||||||
T Consensus 429 l~RleaR~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve 506 (785)
T 3s9v_A 429 MPRLEARSYIENYGPD-DVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTE 506 (785)
T ss_dssp CHHHHHHHHHHHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHH
T ss_pred chHHHHHHHHHHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHH
Confidence 9999999999999988 653 99999999999999999999999999999999999 699999999
Q ss_pred -----------------------------------------------------ccchhhhhCChhHHHHHHHHHHHHHHH
Q 010399 285 -----------------------------------------------------WEVVAANELPKYMQVCYFALLDVVKEM 311 (511)
Q Consensus 285 -----------------------------------------------------WD~~~~~~LPeymK~~f~al~~~~~ei 311 (511)
||++++++||+|||+||.+|+|++|||
T Consensus 507 ~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei 586 (785)
T 3s9v_A 507 IYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDI 586 (785)
T ss_dssp HHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999
Q ss_pred HHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhc
Q 010399 312 EDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWA 390 (511)
Q Consensus 312 e~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~ 390 (511)
++++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++++++++++||+. +|+++++|+
T Consensus 587 ~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~-lt~e~~e~~ 664 (785)
T 3s9v_A 587 AKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEV-LTDEVLSKI 664 (785)
T ss_dssp HHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSC-CCHHHHTTT
T ss_pred HHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCC-CCHHHHhcc
Confidence 999988 888 99999999999999999999999999999999999999999999999999999999999 999999996
Q ss_pred cchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhH
Q 010399 391 ISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQW 469 (511)
Q Consensus 391 ~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~-gvS~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~ 469 (511)
..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++++ +|++|
T Consensus 665 ~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~ 743 (785)
T 3s9v_A 665 DRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDIY 743 (785)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHH
T ss_pred cccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHH
Confidence 5669999999999999999999999999999999999999999 999999999999999999999999999877 99999
Q ss_pred HHHHHHHhhhhhhhcccCCCCCCCch-hHHHHHHhhhcccCC
Q 010399 470 LLPSLNLARMMVVLYQNGDGYTNSTG-KTKDRIASLLVDPLP 510 (511)
Q Consensus 470 ~~~~lN~aR~~~~~Y~~~Dg~t~~~~-~~k~~I~~ll~~Pi~ 510 (511)
+++++|+||+++|||+++||||.|+. +||++|++||++||.
T Consensus 744 ~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 744 KRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999999999999999965 699999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=5.1e-92 Score=782.05 Aligned_cols=400 Identities=25% Similarity=0.326 Sum_probs=338.9
Q ss_pred HHHHHHHHHHHHHHHhc-----cccCccCHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhccC-CCCCCCCCCCCch
Q 010399 49 EKRFETLKAEIEKLLVS-----NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN-GNCDVNYDHNNDL 122 (511)
Q Consensus 49 ~~~~~~Lk~eVr~~l~~-----~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~-~~~~~~~~~~~dL 122 (511)
.+..+-|+..|+++... .. |++++|++||+||||||+|||++||+++|++||+.|.+ |++........||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~----d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL 295 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPV----DLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDI 295 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCC----HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCC----cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCH
Confidence 45567788888887543 24 79999999999999999999999999999999999843 3221100003699
Q ss_pred HHHHHHHHHHhhcCcccchhhhhcccccccccccc---cccchhhhhhhhhhcccccCCccHHHHHHHHHHHHHHhHhhc
Q 010399 123 YIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAM---LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH 199 (511)
Q Consensus 123 ~~~al~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~---l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~ 199 (511)
++|||+|||||||||+||||||++|+ ++|+|++. +.+|++|||+|||||||++|||+|||||+.||++||++.+..
T Consensus 296 ~~tAL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~ 374 (727)
T 3pya_A 296 DDTAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKRER 374 (727)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 78999954 368999999999999999999999999999999999997752
Q ss_pred --------CCCchHHHHHHhccCccccCcchHHHHhhHHHhhcCCcc-------------ccHHHHHHHHHhhHHHHHHH
Q 010399 200 --------LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNST-------------RNELILELAKLDFNLLQALH 258 (511)
Q Consensus 200 --------~~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~-------------~n~~lLelAKlDFn~~Q~~h 258 (511)
++++|+++|+|||++|||+++||||||+||++|+++ ++ +|++||||||||||+||++|
T Consensus 375 ~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~h 453 (727)
T 3pya_A 375 EELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGE-NDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQH 453 (727)
T ss_dssp TCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGG-GCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccC-cchhhhhhhccccccccHHHHHHHHHhHHHHHHHh
Confidence 257899999999999999999999999999999976 54 69999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccc------------------------------------------------------
Q 010399 259 RIELSEISRWWKDIDFATKLPFARDR------------------------------------------------------ 284 (511)
Q Consensus 259 q~EL~~lsrWwk~~~l~~~L~faRdR------------------------------------------------------ 284 (511)
|+||++|+||||++|| .+|||||||
T Consensus 454 q~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yGeEl~~ft~av~r 532 (727)
T 3pya_A 454 QLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESSDSRRSFSDQFHE 532 (727)
T ss_dssp HHHHHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 9999999999999999 579999999
Q ss_pred ccch---------hhhh---CChh--HHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCC
Q 010399 285 WEVV---------AANE---LPKY--MQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKY 349 (511)
Q Consensus 285 WD~~---------~~~~---LPey--mK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~ 349 (511)
||++ +++. +|+| ||+||.+||||+|||++++.+ ||+ ++++|++++|.++++++++||+ +
T Consensus 533 wd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~-~v~~~l~~~W~~~l~s~~~Ea~-~---- 606 (727)
T 3pya_A 533 YIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGR-DVNNLLYLSWGDWMEKWKLYGD-E---- 606 (727)
T ss_dssp HC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHSS-C----
T ss_pred cccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHhcc-c----
Confidence 9974 4444 3888 999999999999999999998 888 9999999999999999999998 2
Q ss_pred CCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHH
Q 010399 350 VPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECY 429 (511)
Q Consensus 350 vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cy 429 (511)
+| |. .++.++.. .-|.. +++ ++.+ +.+..|.++++.||||+||+.+|++|+
T Consensus 607 ----~E----Ae--llv~~I~l----~sG~~-l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~------------ 657 (727)
T 3pya_A 607 ----GE----GE--LMVKMIIL----MKNND-LTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE------------ 657 (727)
T ss_dssp ----CH----HH--HHHHHHHH----HSSSC-GGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH------------
T ss_pred ----cc----ee--eeeeeeec----CCCcc-hHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH------------
Confidence 34 11 33333322 22777 888 7776 888899999999999999999999977
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCChhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhcc
Q 010399 430 VQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPN--HPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVD 507 (511)
Q Consensus 430 Mke~gvS~EeA~~~i~~~Ie~~wk~ln~e~l~~~--~vp~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~ 507 (511)
.+++.+.|+..|++|++.+++++ .+|++| |+.+|++.||.. ||+.| . |..+|.++|++
T Consensus 658 -----------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p-~-i~~hI~kVl~~ 717 (727)
T 3pya_A 658 -----------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGD-H-LQTHISKVLFQ 717 (727)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTT-S-CHHHHHHHHHS
T ss_pred -----------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCH-H-HHHHHHHHHcC
Confidence 55899999999999999999754 699999 999999999985 99999 5 99999999999
Q ss_pred cCC
Q 010399 508 PLP 510 (511)
Q Consensus 508 Pi~ 510 (511)
|+-
T Consensus 718 ~~~ 720 (727)
T 3pya_A 718 KVG 720 (727)
T ss_dssp CCC
T ss_pred ccc
Confidence 984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=9.1e-37 Score=312.86 Aligned_cols=195 Identities=12% Similarity=0.082 Sum_probs=171.3
Q ss_pred HHHHHHHHHHH-HHHHHhhcccccccccccc-------------------------------------------------
Q 010399 255 QALHRIELSEI-SRWWKDIDFATKLPFARDR------------------------------------------------- 284 (511)
Q Consensus 255 Q~~hq~EL~~l-srWwk~~~l~~~L~faRdR------------------------------------------------- 284 (511)
+..|.+|+++. ++||+++|+.+ +||+|+|
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee 93 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED 93 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence 34566777554 56999999965 6999999
Q ss_pred ----------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCC-CH
Q 010399 285 ----------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVP-TF 353 (511)
Q Consensus 285 ----------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vP-tl 353 (511)
|+. ..+|+||+.+|.++++++++++..+ +. ...+++++.|.++++++++||+|+.+|++| |+
T Consensus 94 ~~~~~~~l~~~~~---~~~p~~~~~~~~~l~d~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~ 166 (337)
T 1ps1_A 94 TKQLTDQVAAALD---GPLPDTAPPIAHGFADIWRRTCEGM---TP-AWCARSARHWRNYFDGYVDEAESRFWNAPCDSA 166 (337)
T ss_dssp HHHHHHHHHGGGT---SCCCTTSCHHHHHHHHHHHHHHTTS---CH-HHHHHHHHHHHHHHHHHHHHHTTC-------CH
T ss_pred HHHHHHHHHHHcC---CCCCCCCChHHHHHHHHHHHHhccC---CH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 332 2589999999999999999988653 22 568899999999999999999999999999 99
Q ss_pred HHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcC
Q 010399 354 EECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY 433 (511)
Q Consensus 354 eEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~ 433 (511)
+|||++|++|+|+++++++++++||.. +|+++++. +.+++|+++++.++||+|||+||++|+++|+++|+|.|||+++
T Consensus 167 eEYl~~r~~s~g~~~~~~~~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 167 AQYLAMRRHTIGVQPTVDLAERAGRFE-VPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHcccccchhhHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHc
Confidence 999999999999999999999999999 99999988 7778999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhh
Q 010399 434 GVSEEEACNKIKGMVEIEWMNINEEI 459 (511)
Q Consensus 434 gvS~EeA~~~i~~~Ie~~wk~ln~e~ 459 (511)
|+|+|+|++++.++|+++||++|+..
T Consensus 245 g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 245 GWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=5.7e-36 Score=301.69 Aligned_cols=187 Identities=12% Similarity=0.014 Sum_probs=167.3
Q ss_pred HHHHHHHHHH-HHHHhhcccccccccccc---------------------------------------------------
Q 010399 257 LHRIELSEIS-RWWKDIDFATKLPFARDR--------------------------------------------------- 284 (511)
Q Consensus 257 ~hq~EL~~ls-rWwk~~~l~~~L~faRdR--------------------------------------------------- 284 (511)
-|.+|+++.+ +||+++|+. ++||+|||
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~~~~~e~~~~~ 91 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMSFADGEAYN 91 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 3667777654 555999996 57999999
Q ss_pred -----ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhh
Q 010399 285 -----WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVEN 359 (511)
Q Consensus 285 -----WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~ 359 (511)
|+.+ +.+|+|||.||+++++++++++..+. .+.++.|+.++++|+ ||+|+..|++||++|||++
T Consensus 92 ~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~ 160 (300)
T 1di1_A 92 NRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEY 160 (300)
T ss_dssp HHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHH
T ss_pred HHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHH
Confidence 4432 47899999999999999999998752 356778999999997 8999999999999999999
Q ss_pred cccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCC--------CcchhhHHHH
Q 010399 360 STMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD--------APSSVECYVQ 431 (511)
Q Consensus 360 ~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGd--------v~n~V~cyMk 431 (511)
|++|+|+++++++++++||.. +|+++++. .++|+++++.++||+|||+||++|+++|+ ++|+|.|||+
T Consensus 161 r~~s~g~~~~~~~~~~~~g~~-l~~e~~~~---~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~ 236 (300)
T 1di1_A 161 REKDVGKALLSALMRFSMGLR-LSADELQD---MKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAE 236 (300)
T ss_dssp HHTCHHHHHHHHHHHHHHTCC-CCHHHHHT---THHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHH
T ss_pred HhhhccHHHHHHHHHHHcCCC-CCHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHH
Confidence 999999999999999999999 99999993 69999999999999999999999999999 7899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 010399 432 QYGVSEEEACNKIKGMVEIEWMNINEEI 459 (511)
Q Consensus 432 e~gvS~EeA~~~i~~~Ie~~wk~ln~e~ 459 (511)
++|+|+|+|++++.++|+++|+++|+..
T Consensus 237 ~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 237 ESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=2.4e-34 Score=292.81 Aligned_cols=190 Identities=15% Similarity=0.056 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHH-HHHHhhcccccccccccc------------------------------------------------
Q 010399 254 LQALHRIELSEIS-RWWKDIDFATKLPFARDR------------------------------------------------ 284 (511)
Q Consensus 254 ~Q~~hq~EL~~ls-rWwk~~~l~~~L~faRdR------------------------------------------------ 284 (511)
-...|.+|+++.+ +||+++|+..+ ||+|+|
T Consensus 24 ~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~e~~ 102 (320)
T 3bny_A 24 LCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGS 102 (320)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhcccccCChhhHH
Confidence 3445777777655 55599999766 999999
Q ss_pred --------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Q 010399 285 --------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC 356 (511)
Q Consensus 285 --------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEY 356 (511)
|+.+ +.+|+|||.||.++++++++++..+ + .+.++.|+.++ ++++|++|+..|++||++||
T Consensus 103 ~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeY 171 (320)
T 3bny_A 103 AYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGY 171 (320)
T ss_dssp HHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHH
T ss_pred HHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHH
Confidence 4432 4689999999999999999998764 1 35566677777 59999999999999999999
Q ss_pred HhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCC--------CcchhhH
Q 010399 357 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD--------APSSVEC 428 (511)
Q Consensus 357 l~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGd--------v~n~V~c 428 (511)
|++|++|+|+++++++++++||.. +|+++++. +++|+++++.++||+|||+||++|+++|+ ++|+|.|
T Consensus 172 l~~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~ 247 (320)
T 3bny_A 172 LEYRERDVGKELLAALMRFSMGLK-LSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQI 247 (320)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTCC-CCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHcCCC-CCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHH
Confidence 999999999999999999999999 99999983 69999999999999999999999999998 8899999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 010399 429 YVQQYGVSEEEACNKIKGMVEIEWMNINEEI 459 (511)
Q Consensus 429 yMke~gvS~EeA~~~i~~~Ie~~wk~ln~e~ 459 (511)
||+++|+|+|+|++++.++|++.|+++|+..
T Consensus 248 ~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 248 LAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999855
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=1.7e-33 Score=294.79 Aligned_cols=161 Identities=12% Similarity=-0.017 Sum_probs=151.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHH
Q 010399 293 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVE 372 (511)
Q Consensus 293 LPeymK~~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~ 372 (511)
+|++++.+|.++++++++++..+.+ ....+++++|++++++|++||+|+.+|++||++|||++|++|+|+++++++
T Consensus 152 ~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l 227 (382)
T 3kb9_A 152 HLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDL 227 (382)
T ss_dssp GTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHH
Confidence 5889999999999999998754322 458899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHH
Q 010399 373 ALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEW 452 (511)
Q Consensus 373 ~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~w 452 (511)
+++++|.. +|++++++ +.+++|++++++++||+|||+||++|+++|+++|+|.|||+++|+|+|+|++++.++|+++|
T Consensus 228 ~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~ 305 (382)
T 3kb9_A 228 LEPSSGCE-LPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECI 305 (382)
T ss_dssp HHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 99999998 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 010399 453 MNINEEI 459 (511)
Q Consensus 453 k~ln~e~ 459 (511)
|+||+..
T Consensus 306 k~~~~~~ 312 (382)
T 3kb9_A 306 TEFLAVE 312 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999853
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.93 E-value=1.2e-26 Score=246.36 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCC
Q 010399 300 CYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLED 379 (511)
Q Consensus 300 ~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~ 379 (511)
+-.+++++++++...+.+ ....++++.|++++++|++||+|+..|++||++|||++|++| |+.++++++.+++|.
T Consensus 237 ~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~ 311 (433)
T 3v1v_A 237 PRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGY 311 (433)
T ss_dssp HHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCC
Confidence 468899999999765432 467889999999999999999999999999999999999999 666666778888999
Q ss_pred CcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcC-CCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010399 380 MAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERG-DAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEE 458 (511)
Q Consensus 380 ~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rG-dv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~e 458 (511)
. +|++++++ +.+++|++++++++||+|||+||++|+++| +++|+|.|||+++|+|+|+|++++.++|++.++++.+.
T Consensus 312 ~-lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~ 389 (433)
T 3v1v_A 312 E-LPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERDAYLKAVEVHNELQHSFEAA 389 (433)
T ss_dssp C-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 99999998 778899999999999999999999999995 78899999999999999999999999999999988765
Q ss_pred h
Q 010399 459 I 459 (511)
Q Consensus 459 ~ 459 (511)
.
T Consensus 390 ~ 390 (433)
T 3v1v_A 390 A 390 (433)
T ss_dssp H
T ss_pred H
Confidence 4
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.00 E-value=5.8e-10 Score=116.19 Aligned_cols=144 Identities=13% Similarity=0.010 Sum_probs=110.6
Q ss_pred HHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHH
Q 010399 308 VKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRAL 387 (511)
Q Consensus 308 ~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~ 387 (511)
+.++=.++..+-+..+...+.+.|.+++.+++.|+.. .+.+|+.++|...++.++|+.-.... +.++.. +.++..
T Consensus 131 l~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~~Y~~~rR~~sG~~E~~~~--~~~P~~-~~~e~~ 205 (374)
T 1yyq_A 131 VNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGA--SLWPKE-QFNERS 205 (374)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCTTHHHHHHHHHHCHHHHHH--TTCCTT-TCCTTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHhhccHHHHHHH--hhcccc-ccchhh
Confidence 4444444455333367888999999999999999873 67789999999998888887544332 223333 322221
Q ss_pred hhccchhHHHHHhhhHhhhccCccchhhHhhc-CCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 388 DWAISVPKIIRSSSLIARLDDDVHTYKVEQER-GDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 388 e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~r-Gdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
. ++.+...+.....++.++|||.||.||... |+.+|.|.+++.++|+|.++|++++..++..+..++-.
T Consensus 206 ~-~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~ 275 (374)
T 1yyq_A 206 L-FLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVA 275 (374)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-chhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 144566777788899999999999999985 99999999999999999999999999999988888855
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.54 E-value=2.2e-05 Score=89.04 Aligned_cols=48 Identities=29% Similarity=0.601 Sum_probs=29.8
Q ss_pred ccccCCCCCCCCCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHHh
Q 010399 16 ADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLV 64 (511)
Q Consensus 16 ~~~~r~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~ 64 (511)
..+.||+|||+||+|+++||++ ..+++.++.+.+++++|+++||+||.
T Consensus 21 ~~~~Rrsany~Ps~W~~~~i~s-l~~~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 21 SGLIRRTANPHPNVWGYDLVHS-LKSPYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp --------------CHHHHHHT-CCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCCCCCCCeeec-cCCcccchhHHHHHHHHHHHHHHHhc
Confidence 3457999999999999999995 44666778899999999999999997
No 18
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=80.10 E-value=9.9 Score=38.89 Aligned_cols=103 Identities=14% Similarity=0.046 Sum_probs=65.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 401 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~ 401 (511)
.+..+.+.+..++.+-..+..|.... ||.++|++.-..-+|..+..+...-+ ++. .+++..+.+ ..+-...+
T Consensus 161 ~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~l---~~~g~~lG 233 (360)
T 3lmd_A 161 TVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDAL---KNFGAAVG 233 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 45556667778888888888887655 99999999877666655443322211 122 355555443 56777788
Q ss_pred hHhhhccCccchhhH-----------hhcCCCcchhhHHHHcC
Q 010399 402 LIARLDDDVHTYKVE-----------QERGDAPSSVECYVQQY 433 (511)
Q Consensus 402 ~i~RL~NDI~S~k~E-----------~~rGdv~n~V~cyMke~ 433 (511)
...-+.||+..+.-. ...|.. +...+|.-+.
T Consensus 234 ~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 234 MIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 888888988776432 233443 6666665443
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=75.28 E-value=12 Score=37.04 Aligned_cols=141 Identities=6% Similarity=-0.056 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 400 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~ 400 (511)
.+..+.++...++.+-..+..|... .||.++|+..-..-+|..+..+. ..| ++. .+++..+.+ ..+-+..
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~-~~ga~lag--~~~~~~~~l---~~~g~~l 199 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISA-SIGAYTGG--AEEELAERF---SHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 3444555666777777777777543 38999999887666655443322 222 122 355555443 5677788
Q ss_pred hhHhhhccCccchhhHh-----hcCCCcchhhHHHHcCCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCh-hHHHH
Q 010399 401 SLIARLDDDVHTYKVEQ-----ERGDAPSSVECYVQQYGV--SEEEACNKIKGMVEIEWMNINEEIQDPNHPPL-QWLLP 472 (511)
Q Consensus 401 ~~i~RL~NDI~S~k~E~-----~rGdv~n~V~cyMke~gv--S~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~-~~~~~ 472 (511)
+...-+.||+..+.... ..|. .+...+|..+.+- ..+.|++.+.+.++++.+.+.. +|. +-.+.
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~-------lp~~~~~~~ 271 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLET-------FRECPARDK 271 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-------SCCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHh-------CCCchHHHH
Confidence 88888899988775433 2233 3666677654421 1466666666667777655532 443 44555
Q ss_pred HHHHhhh
Q 010399 473 SLNLARM 479 (511)
Q Consensus 473 ~lN~aR~ 479 (511)
..++++.
T Consensus 272 L~~l~~~ 278 (295)
T 3ipi_A 272 LFQITDY 278 (295)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566554
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=67.03 E-value=32 Score=34.57 Aligned_cols=86 Identities=8% Similarity=0.040 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 401 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~ 401 (511)
.+..+.+....++.+-..+..|.. +..||.++|+..-..-+|..+..+...-+ ++. .+++..+.+ ..+-...+
T Consensus 134 ~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG 207 (334)
T 3rmg_A 134 IIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAFA---RLLGEYIG 207 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 445555666777777777777754 34589999999877766665433322211 122 355555443 56777788
Q ss_pred hHhhhccCccchh
Q 010399 402 LIARLDDDVHTYK 414 (511)
Q Consensus 402 ~i~RL~NDI~S~k 414 (511)
...-+.||+..+.
T Consensus 208 ~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 208 ICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHhccCC
Confidence 8888889887775
No 21
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=66.94 E-value=62 Score=32.56 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhhh
Q 010399 324 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSSL 402 (511)
Q Consensus 324 ~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~~ 402 (511)
+..+.+....++.+-..+..|.. +..||.++|+..-..-+|..+..+...-+ ++. .+++..+.+ ..+-...+.
T Consensus 141 ~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~ 214 (341)
T 3mzv_A 141 MEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGG--APEDQVQAL---FDYGDALGI 214 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHH
Confidence 33444555566777777777754 34689999998877666655433322111 122 355554443 566777888
Q ss_pred HhhhccCccchh
Q 010399 403 IARLDDDVHTYK 414 (511)
Q Consensus 403 i~RL~NDI~S~k 414 (511)
..-+.||+..+.
T Consensus 215 aFQI~DD~ld~~ 226 (341)
T 3mzv_A 215 AFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 888888887664
No 22
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=66.77 E-value=22 Score=35.32 Aligned_cols=112 Identities=9% Similarity=0.062 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCc
Q 010399 332 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 410 (511)
Q Consensus 332 ~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI 410 (511)
..++.+-..+..|... .||.++|+..-..-+|..+..+...-+ ++ . .+++..+.+ .++-...+...-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~la-g-~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIA-N-VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHH-T-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHc-C-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3455555666666543 789999999877666655433222111 12 1 355555543 56778888888999999
Q ss_pred cchhhHh-----------hcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 411 HTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 411 ~S~k~E~-----------~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
..+.-.. ..|.. +...+|- .+.|.+.+.+.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8775432 12222 4544443 578899999999999877754
No 23
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=66.23 E-value=49 Score=32.51 Aligned_cols=121 Identities=10% Similarity=-0.021 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 401 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~ 401 (511)
.+..+.+....++.+-..+..|......||.++|+..-..-+|..+..+...-+ ++. .+++ ...++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT------XMXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh------HHHHHHHHHH
Confidence 344455555677777777788876544789999999877655554433221111 111 2333 1256777888
Q ss_pred hHhhhccCccchhhHh-hcCC-----C--cchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 402 LIARLDDDVHTYKVEQ-ERGD-----A--PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 402 ~i~RL~NDI~S~k~E~-~rGd-----v--~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
...-+.||+..+.-.. .-|+ . .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999998876532 2232 1 2333333 3688999999999999988865
No 24
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=65.99 E-value=42 Score=33.92 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 400 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~ 400 (511)
.+..+.+....++.+-+.+..|.. +..||.++|+..-..-+|..+..+. ..| ++. .+++..+.+ ..+-...
T Consensus 152 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~l---~~~g~~l 224 (345)
T 3oyr_A 152 ALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAAS-EAGAVSAG--VDVAKSEAL---RDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 344555566677777777777753 3458999999987766665543332 222 122 355555443 5677788
Q ss_pred hhHhhhccCccchhh
Q 010399 401 SLIARLDDDVHTYKV 415 (511)
Q Consensus 401 ~~i~RL~NDI~S~k~ 415 (511)
+...-+.||+..+.-
T Consensus 225 G~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 225 GLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 888888899887753
No 25
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=61.62 E-value=36 Score=33.70 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccC
Q 010399 332 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 409 (511)
Q Consensus 332 ~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~ND 409 (511)
..++.+-..+..|...+..||.++|+..-..-+|..+..+. ..| ++. .+++ ....+-...+...-+.||
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~-~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DD 217 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAA-QAGAILAG--ADRG------PLTAYATALGLAFQIADD 217 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHH-HHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHH
Confidence 45667777788887556789999999986555554433222 221 111 2333 125567788888889999
Q ss_pred ccchhhHh-hcC-----CC----cchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 410 VHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 410 I~S~k~E~-~rG-----dv----~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
+..+.-.. .-| |. .+.+.+| | .+.|.+...+.++++...++.
T Consensus 218 ilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~----~--l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 218 ILDVEGNEEAAGKRLGKDAEAHKATFVSLL----G--LAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp CC---------------------CCHHHHH----C--SSHHHHHHHHHHHHHHHHTGG
T ss_pred HHhccCCHHHhCCCccchhhcCCccHHHHH----H--HHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 112 11 2444443 3 477888999999998877653
No 26
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=59.20 E-value=54 Score=32.86 Aligned_cols=83 Identities=16% Similarity=0.083 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhhhHh
Q 010399 326 YAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSSLIA 404 (511)
Q Consensus 326 ~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~~i~ 404 (511)
.+.+....++.+-..+..|.... ..|.++|++.-..-+|..+..+...-+ ++. .+++..+.+ ..+-...+...
T Consensus 141 ~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~aF 214 (342)
T 1wy0_A 141 VIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKAL---SSWGRNVGIAF 214 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHH
Confidence 33444566677777777886533 459999999877666655443322211 122 355555443 56778888888
Q ss_pred hhccCccchh
Q 010399 405 RLDDDVHTYK 414 (511)
Q Consensus 405 RL~NDI~S~k 414 (511)
-+.||+..+.
T Consensus 215 QI~DD~lD~~ 224 (342)
T 1wy0_A 215 QIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 8899988764
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=58.37 E-value=43 Score=33.26 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCc
Q 010399 333 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 410 (511)
Q Consensus 333 ~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI 410 (511)
.++.+-..+..|.. ..||.++|...-..-+|..+.... ..| ++. .+++..+.+ ..+-...+...-+.||+
T Consensus 157 ~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~~-~~ga~lag--a~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 157 GMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFAL-IAGGVLAN--QTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp THHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34555555666643 368999999985444444333222 222 222 355555443 56777788888888998
Q ss_pred cchhhH-----------hhcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 411 HTYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 411 ~S~k~E-----------~~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
..+.-. ...|.. +...+| ..+.|.+.+.+.++++.+.++.
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 776432 122322 444443 4789999999999999988765
No 28
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=58.10 E-value=46 Score=33.55 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCcc
Q 010399 333 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSSLIARLDDDVH 411 (511)
Q Consensus 333 ~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~ 411 (511)
.++.+-..+..|... .+|.++|+..-..-+|..+......-+ ++. .+++..+.+ ..+-...+...-+.||+.
T Consensus 193 ~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDiL 265 (335)
T 2h8o_A 193 GMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDLL 265 (335)
T ss_dssp SHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 345555566666554 689999999887766655433221111 121 355555443 567777888888899987
Q ss_pred chhhHh-----------hcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 412 TYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 412 S~k~E~-----------~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
.+.-.. ..|.. +...+| ..|.|.+.+.+.++++.+.+..
T Consensus 266 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 266 DLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 764321 12222 444444 2688999999999999877754
No 29
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=57.98 E-value=59 Score=32.58 Aligned_cols=110 Identities=11% Similarity=0.089 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCc
Q 010399 333 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 410 (511)
Q Consensus 333 ~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI 410 (511)
.++.+-..+..|... .||.++|+..-..-+|..+..+ +..| ++.. .+++..+.+ ..+-...+...-+.||+
T Consensus 159 ~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~-a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 159 GMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRAS-VRLACLARPG-LPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp THHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455666666676543 7899999998655444443322 2222 2332 355555443 56677788888888988
Q ss_pred cchhhH-----------hhcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 010399 411 HTYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 456 (511)
Q Consensus 411 ~S~k~E-----------~~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln 456 (511)
..+... ...|.. +.+.+| ..|.|.+...+.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 776432 122332 555554 478999999999998886553
No 30
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=57.16 E-value=56 Score=32.40 Aligned_cols=110 Identities=11% Similarity=0.053 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCcc
Q 010399 334 LVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDVH 411 (511)
Q Consensus 334 l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~ 411 (511)
++.+-..+..|... .||.++|+..-..-+|..+..+. ..| ++.. .+++..+.+ ..+-...+...-+.||+.
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~-~~ga~lag~-~~~~~~~~l---~~~g~~lGlaFQI~DDil 226 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASV-ILGALASGR-AEKGELKAL---QTYAQAIGLAFQVQDDIL 226 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcCC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 55566666677543 48999999985544444333222 222 2221 155555543 567778888888999998
Q ss_pred chhhHh-hcCC-----C----cchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 010399 412 TYKVEQ-ERGD-----A----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 456 (511)
Q Consensus 412 S~k~E~-~rGd-----v----~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln 456 (511)
.+.-.. .-|. . .+.+.+| ..+.|.+..++.++++.+.++
T Consensus 227 D~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 227 DVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 875432 2222 1 2555444 468999999999998886664
No 31
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=52.42 E-value=1.1e+02 Score=30.49 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHh
Q 010399 327 AKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIA 404 (511)
Q Consensus 327 lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~ 404 (511)
+.+....++.+-+.+..|.. +..||.++|++.-..-+|..+..+. ..| ++. .+++..+.+ ..+-...+...
T Consensus 148 ~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~l---~~~g~~lG~aF 220 (334)
T 3pko_A 148 HIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSC-YQGAQLAG--APQSVIDRT---RDIGIAIGCAY 220 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHHHHHH
Confidence 34445556666666666543 3468999999876655555433222 222 122 355555443 55666677777
Q ss_pred hhccCccchhh-----------HhhcCCCcchhhHHHHc
Q 010399 405 RLDDDVHTYKV-----------EQERGDAPSSVECYVQQ 432 (511)
Q Consensus 405 RL~NDI~S~k~-----------E~~rGdv~n~V~cyMke 432 (511)
-+.||+..+.. ....|.. +...+|.-+
T Consensus 221 Qi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 221 QMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 77787765532 2345554 665565544
No 32
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=52.12 E-value=40 Score=33.38 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCc
Q 010399 333 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 410 (511)
Q Consensus 333 ~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI 410 (511)
.++.+-..+..|. +..||.++|+..-..-+|..+..+. ..| ++.. .+++..+. ..++-...+...-+.||+
T Consensus 159 ~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~~-~~ga~lag~-~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 159 GMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCAI-RLGALAAGE-KGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTH-HHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHHH-HHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566777777775 3578999999986544444433222 222 2221 12333332 356677788888888988
Q ss_pred cchhhHh-----------hcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 411 HTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 411 ~S~k~E~-----------~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
..+.... ..|.. +...+| ..+.|.+.+.+.++++.+.++.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7764321 22332 555554 3688999999999999877653
No 33
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=51.64 E-value=71 Score=31.89 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCcc
Q 010399 334 LVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDVH 411 (511)
Q Consensus 334 l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~ 411 (511)
++.+-..+..|. +..||.++|+..-..-+|..+..+ +..| ++.. .+++..+.+ ..+-...+...-+.||+.
T Consensus 153 m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~-a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 153 MITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQ-VKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp HHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 556666666665 345999999998654444433222 2222 2332 355555443 567778888888889987
Q ss_pred chhhHh-----------hcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 412 TYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 412 S~k~E~-----------~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
.+.-.. ..|.. +...+| ..|.|.+.+++.++++...++.
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred hccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 764321 22332 555554 3689999999999999877754
No 34
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=48.00 E-value=67 Score=32.56 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh----------CCC-CCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhc
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFH----------AKY-VPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWA 390 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~----------~g~-vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~ 390 (511)
.+..+.++...++.+-..+..|.. .+. .||.++|+..-..-+|..+..++..-+ ++. .+++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVS--DDRGLAEAA 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 355566666777888888888862 233 679999999877666655433322111 121 355554443
Q ss_pred cchhHHHHHhhhHhhhccCccchh
Q 010399 391 ISVPKIIRSSSLIARLDDDVHTYK 414 (511)
Q Consensus 391 ~~~~~i~~~~~~i~RL~NDI~S~k 414 (511)
..+-...+...-+.||+..+.
T Consensus 211 ---~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 ---WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhc
Confidence 566777788888888887664
No 35
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=47.74 E-value=1.6e+02 Score=28.60 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhcc
Q 010399 329 EAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDD 408 (511)
Q Consensus 329 k~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~N 408 (511)
+.+.+++.++-. +......+|++|+......+.|+--..++-.+|..+ .++..+.....-...+.++ ++-
T Consensus 108 ~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~---~~~~~~~A~~lG~AlQltN----ilR 177 (293)
T 3acx_A 108 QSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE---THQTYDVARRLGESLQLIN----ILR 177 (293)
T ss_dssp HHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC---CHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHHHH----HHH
Confidence 445667777732 334456789999888888777766555554443322 1333333222222222222 334
Q ss_pred CccchhhHhhcCCC--cchhhHHHHcCCCCHHH---------HHHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q 010399 409 DVHTYKVEQERGDA--PSSVECYVQQYGVSEEE---------ACNKIKGMVEIEWMNINEEIQDPNHPPLQWL 470 (511)
Q Consensus 409 DI~S~k~E~~rGdv--~n~V~cyMke~gvS~Ee---------A~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~ 470 (511)
|+. ....+|-+ +.- .|.++|+|.++ ..+-+..++..+..-+.+..---..+|....
T Consensus 178 Dv~---eD~~~gR~YLP~d---~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r 244 (293)
T 3acx_A 178 DVG---EDFENERIYFSKQ---RLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQ 244 (293)
T ss_dssp CHH---HHHHTTCCCSCHH---HHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHH
T ss_pred HHH---HHHhCCcEEeCHH---HHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH
Confidence 553 33445644 432 45778999876 2344666667666666543321123554433
No 36
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=47.44 E-value=73 Score=31.96 Aligned_cols=86 Identities=15% Similarity=0.059 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhhh
Q 010399 324 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSSL 402 (511)
Q Consensus 324 ~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~~ 402 (511)
+..+.+....++.+-..+..|.. +..||.++|+..-..-+|..+..+...-+ ++. .+++..+.+ ..+-...+.
T Consensus 155 ~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~ 228 (348)
T 3apz_A 155 VALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVLA---FEYGRNLGL 228 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHHH---HHHHHHHHH
Confidence 33344444555666555555532 13579999999866555544433221111 222 355555443 566677788
Q ss_pred HhhhccCccchhh
Q 010399 403 IARLDDDVHTYKV 415 (511)
Q Consensus 403 i~RL~NDI~S~k~ 415 (511)
..-+.||+..+.-
T Consensus 229 aFQi~DD~lD~~g 241 (348)
T 3apz_A 229 AFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccC
Confidence 8888888887753
No 37
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=41.90 E-value=1.1e+02 Score=30.07 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhc-C-CCcCcHHHHhhccchhHHHHHhhhHhhhccCc
Q 010399 333 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL-E-DMAITKRALDWAISVPKIIRSSSLIARLDDDV 410 (511)
Q Consensus 333 ~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~m-g-~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI 410 (511)
.++.+-..+..|... .+|.++|+..-..-+|..+.... ..|. = -. .+++..+. ..++-...+...-+.||+
T Consensus 153 ~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~-~~ga~l~ag-~~~~~~~~---l~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 153 GMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAV-RLGALSAGD-KGRRALPV---LDKYAESIGLAFQVQDDI 225 (299)
T ss_dssp THHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTH-HHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHhCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 445666666666543 78999999997655555433222 2221 1 12 34454444 356777888888899998
Q ss_pred cchhhH-h----------hcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 411 HTYKVE-Q----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 411 ~S~k~E-~----------~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
..+.-. . ..|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCC-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 877532 2 22332 444444 2478889999999999988765
No 38
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=41.78 E-value=1.5e+02 Score=29.08 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccC
Q 010399 332 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 409 (511)
Q Consensus 332 ~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~ND 409 (511)
..++.+-..+..|. +..||.++|...-..-+|..+..+. ..| ++. .+++..+.+ ..+-...+...-+.||
T Consensus 145 ~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~lag--a~~~~~~~l---~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 145 NGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAAL-KMGCEICE--LNNEESNQI---YKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34555555666664 3468999999986554444433222 222 122 355544443 5677788888888999
Q ss_pred ccchhhH-hhcCCCc-------chhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 410 VHTYKVE-QERGDAP-------SSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 410 I~S~k~E-~~rGdv~-------n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
+..+.-. ..-|+.. +.+.++ ..+.|.+..+++++++.+.++.
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 8777543 2223321 333222 3678888888888888877653
No 39
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=40.78 E-value=2.5e+02 Score=27.81 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-hhCCCCCCHHHHHhhcccccchh-hHHHHH--HHhcCCCcCcHHHHhhccchhHHHH
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKW-FHAKYVPTFEECVENSTMSSGYP-MLAVEA--LVGLEDMAITKRALDWAISVPKIIR 398 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW-~~~g~vPtleEYl~~~~vSsg~~-~~~~~~--~~~mg~~~l~~e~~e~~~~~~~i~~ 398 (511)
.+..+.+....++.+-..+..| ......||.++|+..-..-+|.. +..... ...-|. +++.. ...+-.
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~---~~~~~-----l~~~g~ 202 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK---TPPAA-----YEEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC---CCCHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC---CHHHH-----HHHHHH
Confidence 3445556667788888888888 55435689999998877655555 322221 112232 22222 245667
Q ss_pred HhhhHhhhccCccchh
Q 010399 399 SSSLIARLDDDVHTYK 414 (511)
Q Consensus 399 ~~~~i~RL~NDI~S~k 414 (511)
..+...-+.||+..+.
T Consensus 203 ~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCccc
Confidence 7777777888877664
No 40
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=40.59 E-value=97 Score=30.98 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCc
Q 010399 333 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 410 (511)
Q Consensus 333 ~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI 410 (511)
.++.+-..+..|... ..||.++|+..-..-+|..+.... ..| ++. .+++..+.+ ..+-...+...-+.||+
T Consensus 181 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~-~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 181 GMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASI-MSGAVLAE--ASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp THHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 355566666676532 368999999985444444333222 222 222 355555443 56777788888888988
Q ss_pred cchhhH-----------hhcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 411 HTYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 411 ~S~k~E-----------~~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
..+.-. ...|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 766332 112222 444443 3689999999999999987754
No 41
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=39.20 E-value=1.5e+02 Score=29.32 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCC-CcCcHHHHhhccchhHHHHHhhhHhhhccCcc
Q 010399 333 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLED-MAITKRALDWAISVPKIIRSSSLIARLDDDVH 411 (511)
Q Consensus 333 ~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~-~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~ 411 (511)
.++.+-..+..|... ..||.++|+..-..-+|..+..+.....++. . .+++..+.+ ..+-...+...-+.||+.
T Consensus 159 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~-a~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 159 GMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHE-VSEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp THHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSS-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 455666666677532 3789999998865444443332222222332 1 245555443 567778888888889987
Q ss_pred chhhHh-----------hcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 010399 412 TYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 456 (511)
Q Consensus 412 S~k~E~-----------~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln 456 (511)
.+.... ..|.. +.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 764321 22222 444443 478999999999998886554
No 42
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=37.29 E-value=1.1e+02 Score=30.50 Aligned_cols=109 Identities=7% Similarity=-0.032 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCcc
Q 010399 334 LVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDVH 411 (511)
Q Consensus 334 l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~ 411 (511)
++.+-..+..|. +..||.++|...-..-+|..+..+. ..| ++. .+++..+. ...+-...+...-+.||+.
T Consensus 157 m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 157 MVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAV-QAGLILGQ--APEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp HHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 444555555664 3468999999985544444333222 222 222 34444333 2566777888888889887
Q ss_pred chhhH-----------hhcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 412 TYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 412 S~k~E-----------~~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
.+.-. ...|.. +.+.+| ..+.|.+..+++++++...+..
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 76432 122222 444443 3578888999999998877653
No 43
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=36.72 E-value=62 Score=32.19 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHH-hhccchhHHHHHhhhHhhhcc
Q 010399 332 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRAL-DWAISVPKIIRSSSLIARLDD 408 (511)
Q Consensus 332 ~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~-e~~~~~~~i~~~~~~i~RL~N 408 (511)
..++.+-..+..|. +..||.++|+..-..-+|..+..+. ..| ++. .+++.. +.+ ..+-...+...-+.|
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASL-IMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 44566666666665 4678999999886554444433222 222 121 234443 433 567778888888899
Q ss_pred CccchhhH-hhcCCCcchhhHHHHcCCC------CHHHHHHHHHHHHHHHHHHHH
Q 010399 409 DVHTYKVE-QERGDAPSSVECYVQQYGV------SEEEACNKIKGMVEIEWMNIN 456 (511)
Q Consensus 409 DI~S~k~E-~~rGdv~n~V~cyMke~gv------S~EeA~~~i~~~Ie~~wk~ln 456 (511)
|+..+... ..-|+.... .+..+ ..+.|.+..+++++++.+.+.
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98877543 333443211 22233 358888889999998887765
No 44
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=35.42 E-value=31 Score=25.39 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHh
Q 010399 50 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRL 86 (511)
Q Consensus 50 ~~~~~Lk~eVr~~l~~~~~~~~d~~~~L~lID~lqrL 86 (511)
+++.=|.+|||.-|..+. +.++++-++.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~Te----nsfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKITE----NSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCCT----TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHH
Confidence 455567788888777666 889999999998865
No 45
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=35.34 E-value=1.4e+02 Score=30.15 Aligned_cols=84 Identities=19% Similarity=0.166 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhh
Q 010399 324 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSS 401 (511)
Q Consensus 324 ~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~ 401 (511)
+..+.+....++.+-..+..|... ..||.++|+..-..-+|..+...+ ..| ++. .+++..+.+ ..+-+..+
T Consensus 145 ~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 145 TRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACAS-SIGAVLGG--ADERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 444556667778888888888653 368999999987766665543332 222 122 355555443 56777888
Q ss_pred hHhhhccCccchh
Q 010399 402 LIARLDDDVHTYK 414 (511)
Q Consensus 402 ~i~RL~NDI~S~k 414 (511)
+..-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888889887764
No 46
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=34.56 E-value=34 Score=33.70 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhCC-CCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCcc
Q 010399 335 VKAYFVEAKWFHAK-YVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDVH 411 (511)
Q Consensus 335 ~~ayl~EAkW~~~g-~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~ 411 (511)
+.+-..+..|...+ ..+|.++|+..-..-+|..+..+. ..| ++. .+++..+.+ ..+-...+...-+.||+.
T Consensus 163 ~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~-~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDiL 236 (293)
T 2j1p_A 163 VAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASA-VLGGIIGG--GSDEEIERL---RKFARCIGLLFQVVDDIL 236 (293)
T ss_dssp HHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34444444443221 246888998885443333332222 222 222 355555543 567778888888999998
Q ss_pred chhhHhhcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010399 412 TYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 457 (511)
Q Consensus 412 S~k~E~~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~ 457 (511)
.+..+. -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 237 D~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 237 DVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 775433 23555444 4678888889888888876644
No 47
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=32.83 E-value=16 Score=41.25 Aligned_cols=40 Identities=30% Similarity=0.563 Sum_probs=15.5
Q ss_pred CCCCCCCCCCccccCCCcccc-chHHHHHHHHHHHHHHHHHh
Q 010399 24 NYHPSIWGDHFINVSSNEKYT-NTEVEKRFETLKAEIEKLLV 64 (511)
Q Consensus 24 ~~~ps~W~d~fl~~~~~~~~~-~~~~~~~~~~Lk~eVr~~l~ 64 (511)
+|+|++|++.+++.. .++.. .....++++.|+++||+||.
T Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSL-TSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcccccccC-CCccccCcchhHHHHHHHHHHHHHhh
Confidence 689999999999843 33322 22356788999999999984
No 48
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=28.87 E-value=1.4e+02 Score=23.30 Aligned_cols=61 Identities=5% Similarity=0.061 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHh-hcCcccchh
Q 010399 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLR-QHGYKVSAD 142 (511)
Q Consensus 72 d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLR-qhGy~VS~D 142 (511)
..+..=++...+.++|+. ++|+++++..+=. ++++..+ ..+.. .++.-.-.+ +.|+.++..
T Consensus 25 G~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~---d~dG~i~---~~EF~-~~~~~~~~~~~~g~~lP~~ 86 (95)
T 1c07_A 25 GFVSGLEVREIFLKTGLP---STLLAHIWSLCDT---KDCGKLS---KDQFA-LAFHLISQKLIKGIDPPHV 86 (95)
T ss_dssp SEECHHHHHHHHHTTTCC---HHHHHHHHHHHCT---TCSSSEE---TTTHH-HHHHHHHHHHTSCCCCCSS
T ss_pred CcEeHHHHHHHHHHcCCC---HHHHHHHHHHHCC---CCCCcCC---HHHHH-HHHHHHHHHHHcCCCCCCc
Confidence 344556677888999976 6677666554311 1222221 23333 333333334 789987653
No 49
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=25.36 E-value=62 Score=24.81 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHc---cCCcchhhHHHHHH---HHHHHHHHHHHHH
Q 010399 300 CYFALLDVVKEMEDKLVN---KEPLCCMYYAKEAI---KGLVKAYFVEAKW 344 (511)
Q Consensus 300 ~f~al~~~~~eie~~~~k---~~~~~~~~~lkk~w---~~l~~ayl~EAkW 344 (511)
-|..|+.++.|++.++.. +.+ ...+.+++-. ..+++.++.|++-
T Consensus 12 kY~~LL~VIeEmgkdIrpTYaGsk-~~~ERLkR~I~hAr~LVrECl~E~er 61 (65)
T 2kw6_A 12 KYAELLAIIEELGKEIRPTYAGSK-SAMERLKRGIIHARGLVRECLAETER 61 (65)
T ss_dssp HHHHHHHHHHHHTTTHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccchhhccCc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999887 333 4566777665 5678888888863
No 50
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.95 E-value=1.6e+02 Score=23.48 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhh
Q 010399 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFK 145 (511)
Q Consensus 73 ~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~ 145 (511)
.+..=++...+.++|++ ++|+++++..+=. ++++.. ..+=...+|.-.-+.|+|+.++++.+.
T Consensus 27 ~Is~~el~~~l~~~~l~---~~~l~~i~~~~D~---d~dG~i----~~~EF~~~~~~~~~~~~g~~~~~~~l~ 89 (99)
T 1qjt_A 27 RVLALDAAAFLKKSGLP---DLILGKIWDLADT---DGKGVL----SKQEFFVALRLVACAQNGLEVSLSSLS 89 (99)
T ss_dssp CCCSHHHHHHHHTSSSC---HHHHHHHHHHHCC---SSSSSC----CSHHHHHHHHHHHHHTTTCCSSGGGCS
T ss_pred cCCHHHHHHHHHHcCCC---HHHHHHHHHHHCC---CCCCcC----CHHHHHHHHHHHHHHHcCCCCChhhcc
Confidence 34445677778889976 6677666554421 122222 233456677777889999999987654
No 51
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=23.57 E-value=1.1e+02 Score=30.59 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC--CCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhhh
Q 010399 326 YAKEAIKGLVKAYFVEAKWFHAK--YVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSSL 402 (511)
Q Consensus 326 ~lkk~w~~l~~ayl~EAkW~~~g--~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~~ 402 (511)
.+.+....++.+-..+..|.... ..||.++|+..-..-+|..+..+...-+ ++. .+++ . .....+-...+.
T Consensus 135 ~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~-~---~~l~~~g~~lG~ 208 (340)
T 2e8v_A 135 IFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP--SSHH-G---HSLVPFINLLGI 208 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC--C----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CcHH-H---HHHHHHHHHHHH
Confidence 34445566777777788887654 5789999999877666654433322211 122 2222 2 234677888888
Q ss_pred HhhhccCccchhh
Q 010399 403 IARLDDDVHTYKV 415 (511)
Q Consensus 403 i~RL~NDI~S~k~ 415 (511)
..-+.||+..+.-
T Consensus 209 aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 209 IYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccC
Confidence 9999999887643
No 52
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=23.53 E-value=62 Score=25.27 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 010399 433 YGVSEEEACNKIKGMVEIEWMNI 455 (511)
Q Consensus 433 ~gvS~EeA~~~i~~~Ie~~wk~l 455 (511)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999988644
No 53
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=22.57 E-value=69 Score=31.17 Aligned_cols=92 Identities=8% Similarity=0.008 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh--cCCCcCcHHHHhhccchhHHHHHhhhHhhhccCcc
Q 010399 334 LVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDVH 411 (511)
Q Consensus 334 l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~--mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~ 411 (511)
++.+-..+..|... .||+++|+..-..-+|..+..+. ..| ++. .+++..+.+ .++-...+...-+.||+.
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~-~lGailag--a~~~~~~~l---~~~G~~lG~aFQI~DD~~ 222 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGA-ACGAILGG--AAEEEIQKL---RNFGLYQGTLRGMMEMKN 222 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHhhc
Confidence 45565656666533 79999999865554444443322 222 222 355555543 567778888888889871
Q ss_pred chhhHhhcCCCcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 010399 412 TYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 456 (511)
Q Consensus 412 S~k~E~~rGdv~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln 456 (511)
. ..|++.+.+.++.+.+-+.|.
T Consensus 223 ~-----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 223 S-----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp T-----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred c-----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 0 125556666666666666553
No 54
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=22.14 E-value=1.5e+02 Score=29.30 Aligned_cols=86 Identities=12% Similarity=0.070 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhH
Q 010399 324 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLI 403 (511)
Q Consensus 324 ~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i 403 (511)
+..+.+....++.+-..+..|... ..||.++|+..-..-+|..+..+...-++=-. .+++..+.+ ..+-...+..
T Consensus 132 ~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~a 206 (325)
T 3aqb_B 132 HQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQ-LDEQSTYHI---KQFGHCIGMS 206 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT-CCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHH
Confidence 444445556677777777777643 35899999998877666654433322221112 355555443 5677788888
Q ss_pred hhhccCccchh
Q 010399 404 ARLDDDVHTYK 414 (511)
Q Consensus 404 ~RL~NDI~S~k 414 (511)
.-+.||+..+.
T Consensus 207 fQi~DD~ld~~ 217 (325)
T 3aqb_B 207 YQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 88889987764
No 55
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=20.34 E-value=1.1e+02 Score=23.72 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHc--cCCcchhhHHHHHH---HHHHHHHHHHHH
Q 010399 299 VCYFALLDVVKEMEDKLVN--KEPLCCMYYAKEAI---KGLVKAYFVEAK 343 (511)
Q Consensus 299 ~~f~al~~~~~eie~~~~k--~~~~~~~~~lkk~w---~~l~~ayl~EAk 343 (511)
--|..|+.+++|++.++.. -|+-.....+++.. .-+++.++.|++
T Consensus 15 sKY~~LL~vIeEmgkdirPTyagsks~~ERLkRgI~hAr~LVRECl~e~e 64 (69)
T 2m1l_A 15 STYTDLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECLAETE 64 (69)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccccchhhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999987 23214566666665 567888888876
No 56
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=20.06 E-value=1.7e+02 Score=28.76 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHh-cCCCcCcHHHHhhccchhHHHHHhh
Q 010399 323 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 401 (511)
Q Consensus 323 ~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~-mg~~~l~~e~~e~~~~~~~i~~~~~ 401 (511)
.+..+.+.+..++.+-..+..|......||.++|+..-..-+|..+..+...-+ ++. .++ ....+-...+
T Consensus 112 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~--~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 112 AVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD--YKE-------DLKPLLNTLG 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC--ChH-------HHHHHHHHHH
Confidence 444556667778888888888877666899999999887666654433322211 122 121 2355667778
Q ss_pred hHhhhccCccchh
Q 010399 402 LIARLDDDVHTYK 414 (511)
Q Consensus 402 ~i~RL~NDI~S~k 414 (511)
...-+.||+..+.
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 8888888887664
Done!