Your job contains 1 sequence.
>010400
MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC
DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE
VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK
HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY
KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ
YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR
THLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW
KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD
GEDVPSVPLDELLADLDLKSDDGEGDDSMRE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010400
(511 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2044299 - symbol:NMD3 "AT2G03820" species:3702... 1903 1.6e-196 1
UNIPROTKB|E1BTL9 - symbol:NMD3 "Uncharacterized protein" ... 1220 3.9e-124 1
ZFIN|ZDB-GENE-050320-149 - symbol:nmd3 "NMD3 homolog (S. ... 1206 1.2e-122 1
UNIPROTKB|Q08DS5 - symbol:NMD3 "60S ribosomal export prot... 1184 2.5e-120 1
DICTYBASE|DDB_G0271306 - symbol:nmd3 "60S ribosomal expor... 1177 1.4e-119 1
RGD|1308468 - symbol:Nmd3 "NMD3 homolog (S. cerevisiae)" ... 1177 1.4e-119 1
UNIPROTKB|C9JA08 - symbol:NMD3 "60S ribosomal export prot... 1170 7.7e-119 1
UNIPROTKB|Q96D46 - symbol:NMD3 "60S ribosomal export prot... 1170 7.7e-119 1
MGI|MGI:2140103 - symbol:Nmd3 "NMD3 homolog (S. cerevisia... 1163 4.2e-118 1
UNIPROTKB|I3LDB7 - symbol:NMD3 "Uncharacterized protein" ... 1132 8.2e-115 1
CGD|CAL0001704 - symbol:NMD3 species:5476 "Candida albica... 1128 2.2e-114 1
POMBASE|SPAC16C9.03 - symbol:nmd3 "export adaptor Nmd3 (p... 1083 1.3e-109 1
FB|FBgn0023542 - symbol:Nmd3 "Nonsense-mediated mRNA 3" s... 1081 2.1e-109 1
SGD|S000001213 - symbol:NMD3 "Protein involved in nuclear... 1054 1.5e-106 1
UNIPROTKB|G4N0U7 - symbol:MGG_05817 "Nonsense-mediated mR... 1039 5.8e-105 1
WB|WBGene00012030 - symbol:T25G3.3 species:6239 "Caenorha... 1029 6.7e-104 1
ASPGD|ASPL0000044316 - symbol:AN1711 species:162425 "Emer... 1025 1.8e-103 1
>TAIR|locus:2044299 [details] [associations]
symbol:NMD3 "AT2G03820" species:3702 "Arabidopsis
thaliana" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006611 "protein export from nucleus"
evidence=IMP] [GO:0007029 "endoplasmic reticulum organization"
evidence=IMP] [GO:0009834 "secondary cell wall biogenesis"
evidence=IMP] Pfam:PF04981 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GO:GO:0006611 GO:GO:0007029 GO:GO:0009834 KO:K07562
OMA:PVCKDNV InterPro:IPR007064 EMBL:AC007196 EMBL:AY099778
EMBL:AY128878 IPI:IPI00544052 PIR:F84452 RefSeq:NP_178476.1
UniGene:At.20649 IntAct:Q9SI58 STRING:Q9SI58 PRIDE:Q9SI58
EnsemblPlants:AT2G03820.1 GeneID:814908 KEGG:ath:AT2G03820
TAIR:At2g03820 InParanoid:Q9SI58 PhylomeDB:Q9SI58
ProtClustDB:CLSN2683854 Genevestigator:Q9SI58 Uniprot:Q9SI58
Length = 516
Score = 1903 (674.9 bits), Expect = 1.6e-196, P = 1.6e-196
Identities = 357/507 (70%), Positives = 418/507 (82%)
Query: 4 DAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
++GMF V QT+GSVLCCKCG+PMAPNAANMCV CLRSEVDITEGLQK + I +CPEC CY
Sbjct: 6 ESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTCY 65
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
LQPP+TWIK Q ESKELLTFC+KRLKNLN+V+L NAEF+WTEPHSKRIKVKL VQ EVLN
Sbjct: 66 LQPPKTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLN 125
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
GA+LEQSY VEY +D++C+SCSR QANPDQWVA++QLRQHV+HRRTFFYLEQLIL+HDA
Sbjct: 126 GAVLEQSYPVEYTVRDNLCESCSRFQANPDQWVASIQLRQHVSHRRTFFYLEQLILRHDA 185
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
A+RAIRI Q+DQGIDFFFGN+SHA FVEF+ KV P+ R D+QLVSHD KS+ +NYKYT
Sbjct: 186 ASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKYT 245
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
+SV+I P+CREDL+CLP KVA LGNLGPLV+C KV+++I LLDP TLR FLDA QYWR
Sbjct: 246 YSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLDARQYWR 305
Query: 304 SSFKSLLTSRQLVEYIVLDXXXXXXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHL 363
S F+S LTSRQLV+Y V D KY L+ Q+AR SD GK +F ++THL
Sbjct: 306 SGFRSALTSRQLVKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGK---MFYVQTHL 362
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLV---LPETILIKKSYEEKRLRKRSKPRSW 420
GH+L PGD ALGYD+Y AN ND E++KY+ V LPE ILIKK YEE+R RK+ K R+W
Sbjct: 363 GHILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKKSRNW 422
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
KLKSL ME+DDS+GR D EK +KEYEEFLRDLEENPELRFNISLYR+KDYQ SE AS+TD
Sbjct: 423 KLKSLPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYRDKDYQASETASMTD 482
Query: 481 GEDVPSVPLDELLADLDLKSDDGEGDD 507
GE PSVP++ELLADLDL ++ + DD
Sbjct: 483 GEGAPSVPIEELLADLDLSFEEEDDDD 509
>UNIPROTKB|E1BTL9 [details] [associations]
symbol:NMD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005730 "nucleolus" evidence=IEA] Pfam:PF04981
GO:GO:0005730 CTD:51068 GeneTree:ENSGT00390000005104 KO:K07562
OMA:PVCKDNV InterPro:IPR007064 EMBL:AADN02021063 EMBL:AADN02021062
IPI:IPI00591200 RefSeq:XP_422813.2 Ensembl:ENSGALT00000015516
GeneID:425009 KEGG:gga:425009 NextBio:20827260 Uniprot:E1BTL9
Length = 504
Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
Identities = 236/507 (46%), Positives = 338/507 (66%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T GS+LCC CG+P+ PN ANMCV CLR+ VDITEG+ K + +S C +C+ YLQPP TWI+
Sbjct: 11 TQGSILCCHCGVPIPPNPANMCVGCLRARVDITEGIPKQLSVSFCKQCERYLQPPGTWIQ 70
Query: 73 AQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
LES+ELL C+K++K +L++VRL++A FIWTEPHSKR+K+KL VQKEV+NGA+L+Q +
Sbjct: 71 CALESRELLALCLKKIKASLSKVRLIDAGFIWTEPHSKRLKLKLTVQKEVINGAVLQQVF 130
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
VVEY+ Q MC+ C R++A D W A VQ+RQ H++TF+YLEQLILKH +RI
Sbjct: 131 VVEYLIQSQMCEDCHRIEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKHRLHQNTLRIK 189
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
++ G+DF++ ++ HA K V+F+ P RS+ ++L SHD SN +NYK TFSVEI P+
Sbjct: 190 EIHDGLDFYYSSKQHAQKMVDFLQCTVPSRSKSSQRLTSHDVHSNVYNYKSTFSVEIVPV 249
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C+++++CL PK+A SLGN+ + +C++VT+++ L+DP TL+ +D + YWR F SL
Sbjct: 250 CKDNVVCLSPKLAQSLGNMSQICVCIRVTSTVHLIDPSTLQIAEIDGNTYWRHPFNSLFN 309
Query: 312 SRQLVEYIVLDXXXXX-----XXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
+QL E+IV+D K+ LA+A V + S+ + F THLGH+
Sbjct: 310 PKQLEEFIVMDINRVQEKKKPAGAGARSNKHTLAEAWVKKTSELNTDHQYFCC-THLGHI 368
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
LNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR R+WKLK L+
Sbjct: 369 LNPGDLVLGFDLANCNLNDEFVNKMSPHNIPDVVLIKKSYDRA---KRQHRRNWKLKELE 425
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPS 486
+ + + TD E+ +Y++FL DLEE+ +R N+++YRN D P E S TD + P
Sbjct: 426 RDREGTD--TDDER---QYQDFLEDLEEDEAIRKNVNIYRNADI-PVE--SDTDDDGAPR 477
Query: 487 VPLDELLADLDLKSD--DGEGDDSMRE 511
+ L E+L DL + D GEG + M E
Sbjct: 478 ISLAEMLEDLHISEDATGGEGANMMTE 504
>ZFIN|ZDB-GENE-050320-149 [details] [associations]
symbol:nmd3 "NMD3 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] Pfam:PF04981 ZFIN:ZDB-GENE-050320-149 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0015031 CTD:51068 eggNOG:COG1499
GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
HOVERGEN:HBG055100 KO:K07562 OMA:PVCKDNV OrthoDB:EOG43BMNM
InterPro:IPR007064 EMBL:BC090467 IPI:IPI00507258
RefSeq:NP_001013587.1 UniGene:Dr.79205 STRING:Q5BLF0
Ensembl:ENSDART00000021299 GeneID:541444 KEGG:dre:541444
InParanoid:Q5BLF0 NextBio:20879251 Bgee:Q5BLF0 Uniprot:Q5BLF0
Length = 505
Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
Identities = 235/504 (46%), Positives = 338/504 (67%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC CG+P+ PN ANMCV+CLR++VDI+EG+ K V I C +C+ YLQPP +W++
Sbjct: 13 GNILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K+LK ++++VRL++A F+WTEPHSKRIK+KL +QKEV+NGAIL+Q + V
Sbjct: 73 LESRELLALCLKKLKASMSKVRLIDAGFLWTEPHSKRIKIKLTIQKEVMNGAILQQVFTV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
E+V Q MC+ C RV+A D W A VQ+RQ H++TF+YLEQLILKH +RI ++
Sbjct: 133 EFVVQGQMCEDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
+GIDF++ + HA K V+F+ P RS+ ++L+SHD SN +NYK TFSVEI P+C+
Sbjct: 192 HEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL P++A SLGN+G + +C++VT+SI L+DP TL+ +D +WR F SL + R
Sbjct: 252 DNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAEVDGSTFWRHPFNSLCSPR 311
Query: 314 QLVEYIVLDXXXXX-----XXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+I++D K+ LA+ V + S+ + + RT +GHLLN
Sbjct: 312 QLEEFIIMDIDIIRDQRLGAGAGLKSNKHTLAEVWVQKTSEMDSSHQ-YHCRTFMGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
GD LG+D +AN ND L+K +P+ +LIKKSY+ R+ KR++ R WKLK +D E
Sbjct: 371 IGDLVLGFDFANANINDEFLNKMNPQHVPDVVLIKKSYD--RM-KRARKRVWKLKEMDRE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D + TD E+ +Y EFL DLEE+ LR NI+++R+ P E S TD + P +
Sbjct: 428 KDAAD--TDDER---QYTEFLEDLEEDEMLRKNINIFRDASKIPVE-ESDTDDDGAPRIS 481
Query: 489 LDELLADLDLK-SDDGEGDDSMRE 511
L E+L DL L + GEG D M +
Sbjct: 482 LAEMLEDLSLSDATGGEGADMMTD 505
>UNIPROTKB|Q08DS5 [details] [associations]
symbol:NMD3 "60S ribosomal export protein NMD3"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
Pfam:PF04981 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0015031 EMBL:BC123588 IPI:IPI00711949 RefSeq:NP_001068888.1
UniGene:Bt.27265 STRING:Q08DS5 PRIDE:Q08DS5
Ensembl:ENSBTAT00000021594 GeneID:509871 KEGG:bta:509871 CTD:51068
eggNOG:COG1499 GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
HOVERGEN:HBG055100 InParanoid:Q08DS5 KO:K07562 OMA:PVCKDNV
OrthoDB:EOG43BMNM NextBio:20869176 ArrayExpress:Q08DS5
InterPro:IPR007064 Uniprot:Q08DS5
Length = 503
Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
Identities = 232/508 (45%), Positives = 334/508 (65%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
V T G +LCC CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP T
Sbjct: 8 VKHTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGT 67
Query: 70 WIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W++ LES++LL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+
Sbjct: 68 WVQCALESRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQ 127
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q +VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +
Sbjct: 128 QVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTL 186
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI
Sbjct: 187 RIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEI 246
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PIC+++++CL PK+A SLGN+ + +C++VT+ I L+DP TL+ +D + +W F S
Sbjct: 247 VPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNS 306
Query: 309 LLTSRQLVEYIVLDXXXX-----XXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHL 363
L +QL E+IV++ K+ L + V + S+ + F RTHL
Sbjct: 307 LCHPKQLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHL 365
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
GHLLNPGD LG+DL + N ND ++K K +P+ +LIKKSY+ R ++R R+WKLK
Sbjct: 366 GHLLNPGDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRTRRQRR---RNWKLK 422
Query: 424 SLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
L + +++ TD E+ +Y++FL DLEE+ +R N+++YR+ P E S TD E
Sbjct: 423 ELARDRENTD--TDDER---QYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEG 474
Query: 484 VPSVPLDELLADLDLKSD--DGEGDDSM 509
P + L E+L DL + D GEG+ M
Sbjct: 475 APRISLAEMLEDLHISQDATGGEGESMM 502
>DICTYBASE|DDB_G0271306 [details] [associations]
symbol:nmd3 "60S ribosomal export protein"
species:44689 "Dictyostelium discoideum" [GO:0043023 "ribosomal
large subunit binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0000055
"ribosomal large subunit export from nucleus" evidence=ISS]
[GO:0015031 "protein transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] dictyBase:DDB_G0271306
Pfam:PF04981 GO:GO:0005829 GO:GO:0005634 GO:GO:0005654
GO:GO:0015031 GenomeReviews:CM000151_GR EMBL:AAFI02000006
GO:GO:0000055 GO:GO:0043023 eggNOG:COG1499 KO:K07562 OMA:PVCKDNV
InterPro:IPR007064 RefSeq:XP_645660.1 STRING:Q55BF2
EnsemblProtists:DDB0302495 GeneID:8617852 KEGG:ddi:DDB_G0271306
ProtClustDB:CLSZ2846908 Uniprot:Q55BF2
Length = 530
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 232/510 (45%), Positives = 336/510 (65%)
Query: 10 VPQTV-GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
+PQ ++LCC CG+ + N +NMCV C++S+VDITEG+ K + I C C YLQPP
Sbjct: 4 IPQVKQANILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWCRGCARYLQPPN 63
Query: 69 TWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W A+LES+ELLT C+KR+K LN+V+LV+A ++WTEPHSKR+KVKL +QKEV AIL+
Sbjct: 64 HWAIAELESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSAILQ 123
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q +++E++ Q CD C + +A D W + VQLRQ V H+RTF Y+EQLILKH+A ++ +
Sbjct: 124 QIFIIEFIVQGQQCDKCQKFEAK-DTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQTL 182
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
I + G+DFFF NR+HA+KFVEF+ + PV+++ +QL+S D ++N NYKYTFSVEI
Sbjct: 183 NIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDEQNNAANYKYTFSVEI 242
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
P+ ++D++CLPPK+A LGN+GPLV+ KV+N I +DP TL + A +W S F++
Sbjct: 243 VPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLHTGEISALTFWNSPFRA 302
Query: 309 LLTSRQLVEYIVLDXXXXXXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
L + +QLVE+ VLD +Y L+D Q+ R +DFG ND I+ IR+HLG++LN
Sbjct: 303 LSSYKQLVEFTVLDVNLTGATRG----RYALSDIQLMRSADFGANDNIYDIRSHLGNILN 358
Query: 369 PGDYALGYDLYSANNNDMEL-DKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
PGD ALGYD+ S+N D +L K LP+ +L+KK+Y K R K R W K +
Sbjct: 359 PGDLALGYDVASSNFPDSDLAGMKKNQQLPDFVLVKKTYPSKN-DFRFK-RHWYFKEIPK 416
Query: 428 EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD------YQPSEMASVTDG 481
E ++ + + ++M ++ EEFLR++E +PELR I++Y+ D + +M
Sbjct: 417 EGIENPKKFEIDQMERDREEFLREIEADPELRSKINIYKEADAANILQQRIKKMQEHGID 476
Query: 482 EDV--PSVPLDELLADL--DLKSDDGEGDD 507
ED + LD LL D+ +L +D E +D
Sbjct: 477 EDAIKEELALDGLLDDMVNNLTINDEEFED 506
>RGD|1308468 [details] [associations]
symbol:Nmd3 "NMD3 homolog (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] RGD:1308468 Pfam:PF04981 GO:GO:0005730
EMBL:CH473976 CTD:51068 eggNOG:COG1499 GeneTree:ENSGT00390000005104
HOGENOM:HOG000168152 HOVERGEN:HBG055100 KO:K07562 OrthoDB:EOG43BMNM
InterPro:IPR007064 EMBL:BC161998 IPI:IPI00762953
RefSeq:NP_001101152.1 UniGene:Rn.61090 STRING:B1WC44
Ensembl:ENSRNOT00000012417 Ensembl:ENSRNOT00000064244 GeneID:310512
KEGG:rno:310512 UCSC:RGD:1308468 NextBio:662089
Genevestigator:B1WC44 Uniprot:B1WC44
Length = 503
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 231/508 (45%), Positives = 335/508 (65%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
+V ++ G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP
Sbjct: 7 SVDRSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPA 66
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W++ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL
Sbjct: 67 SWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAIL 126
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+
Sbjct: 127 QQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNT 185
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVE
Sbjct: 186 LRIKEIHDGLDFYYSSKQHAQKMVEFLQGTVPCRYKSSQRLISQDIHSNTYNYKSTFSVE 245
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC+++++CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + +W F
Sbjct: 246 IVPICKDNVVCLSPKLAQSLGNMNQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFN 305
Query: 308 SLLTSRQLVEYIVLDXXXXX-----XXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTH 362
SL +QL E+IV++ K+ L + + + S+ + F RTH
Sbjct: 306 SLCHPKQLEEFIVIECSIVRDLKRNAGAGVISKKHTLGEVWIQKTSEMDTDKQYFC-RTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLNPGD LG+DL + N ND ++K K +P+ +LIKKSY+ KR + R+WKL
Sbjct: 365 LGHLLNPGDLVLGFDLANCNLNDEHVNKMKSDRVPDVVLIKKSYDRT---KRQRRRNWKL 421
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L + +D TD E+ +Y++FL DLEE+ +R N+++YR+ P E S TD E
Sbjct: 422 KELARDREDMD--TDDER---QYQDFLEDLEEDETIRKNVNIYRDSTV-PVE--SDTDDE 473
Query: 483 DVPSVPLDELLADLDLKSD-DGEGDDSM 509
P + L E+L DL + D GE SM
Sbjct: 474 GAPRISLAEMLEDLRISQDATGEEGASM 501
>UNIPROTKB|C9JA08 [details] [associations]
symbol:NMD3 "60S ribosomal export protein NMD3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Pfam:PF04981 GO:GO:0005730
HOGENOM:HOG000168152 OMA:PVCKDNV InterPro:IPR007064 HGNC:HGNC:24250
EMBL:AC021649 EMBL:AC108738 IPI:IPI00797406
ProteinModelPortal:C9JA08 STRING:C9JA08 PRIDE:C9JA08
Ensembl:ENST00000472947 UCSC:uc003fec.3 ArrayExpress:C9JA08
Bgee:C9JA08 Uniprot:C9JA08
Length = 529
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 229/500 (45%), Positives = 330/500 (66%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDXXXX-----XXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E+ +Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDER---QYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSDDGEGDDS 508
L E+L DL + S D G+++
Sbjct: 480 LAEMLEDLHI-SQDATGEEA 498
>UNIPROTKB|Q96D46 [details] [associations]
symbol:NMD3 "60S ribosomal export protein NMD3"
species:9606 "Homo sapiens" [GO:0015031 "protein transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Pfam:PF04981 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0015031 EMBL:CH471052 CTD:51068
eggNOG:COG1499 HOGENOM:HOG000168152 HOVERGEN:HBG055100 KO:K07562
InterPro:IPR007064 EMBL:AF132941 EMBL:BC013317 IPI:IPI00790937
RefSeq:NP_057022.2 UniGene:Hs.598836 ProteinModelPortal:Q96D46
DIP:DIP-53427N IntAct:Q96D46 STRING:Q96D46 PhosphoSite:Q96D46
DMDM:74731412 PaxDb:Q96D46 PRIDE:Q96D46 DNASU:51068
Ensembl:ENST00000351193 Ensembl:ENST00000460469 GeneID:51068
KEGG:hsa:51068 UCSC:uc003feb.1 GeneCards:GC03P160822
H-InvDB:HIX0003824 HGNC:HGNC:24250 HPA:HPA035019 MIM:611021
neXtProt:NX_Q96D46 PharmGKB:PA134884140 InParanoid:Q96D46
PhylomeDB:Q96D46 GenomeRNAi:51068 NextBio:53671 ArrayExpress:Q96D46
Bgee:Q96D46 CleanEx:HS_NMD3 Genevestigator:Q96D46 Uniprot:Q96D46
Length = 503
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 231/502 (46%), Positives = 329/502 (65%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDXXXX-----XXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E+ +Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDER---QYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>MGI|MGI:2140103 [details] [associations]
symbol:Nmd3 "NMD3 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000055 "ribosomal large subunit export from
nucleus" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=ISO]
MGI:MGI:2140103 Pfam:PF04981 GO:GO:0005737 GO:GO:0005654
GO:GO:0005730 GO:GO:0015031 CTD:51068 eggNOG:COG1499
GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
HOVERGEN:HBG055100 KO:K07562 OMA:PVCKDNV OrthoDB:EOG43BMNM
InterPro:IPR007064 EMBL:AK034772 EMBL:AK088667 EMBL:AK143289
EMBL:AK145248 EMBL:AK166283 EMBL:BC003842 IPI:IPI00116309
IPI:IPI00881976 RefSeq:NP_598548.1 UniGene:Mm.21062
UniGene:Mm.439485 ProteinModelPortal:Q99L48 STRING:Q99L48
PhosphoSite:Q99L48 PaxDb:Q99L48 PRIDE:Q99L48
Ensembl:ENSMUST00000029358 GeneID:97112 KEGG:mmu:97112
UCSC:uc008pmk.1 UCSC:uc008pml.1 InParanoid:Q99L48 NextBio:352527
Bgee:Q99L48 CleanEx:MM_NMD3 Genevestigator:Q99L48 Uniprot:Q99L48
Length = 503
Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
Identities = 227/508 (44%), Positives = 334/508 (65%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
++ + G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP
Sbjct: 7 SIEHSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPA 66
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W++ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL
Sbjct: 67 SWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAIL 126
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+
Sbjct: 127 QQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNT 185
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+RI ++ G+DF++ ++ HA K VEF+ + P R + ++L+S D SN +NYK TFSVE
Sbjct: 186 LRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKSTFSVE 245
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC+++++CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + +W F
Sbjct: 246 IVPICKDNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFN 305
Query: 308 SLLTSRQLVEYIVLDXXXX-----XXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTH 362
SL +QL E+IV++ K+ L + + + S+ + F RTH
Sbjct: 306 SLCHPKQLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNTDKQYFC-RTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKL
Sbjct: 365 LGHLLNPGDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKL 421
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L + ++ TD E+ +Y++FL DLEE+ +R ++++YR+ P E S TD E
Sbjct: 422 KELARDRENMD--TDDER---QYQDFLEDLEEDEAIRKHVNIYRDATI-PVE--SDTDDE 473
Query: 483 DVPSVPLDELLADLDLKSD-DGEGDDSM 509
P + L E+L DL + D GE SM
Sbjct: 474 GAPRISLAEMLEDLHISQDATGEEGASM 501
>UNIPROTKB|I3LDB7 [details] [associations]
symbol:NMD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] Pfam:PF04981
GO:GO:0005730 GeneTree:ENSGT00390000005104 OMA:PVCKDNV
InterPro:IPR007064 EMBL:CU928899 Ensembl:ENSSSCT00000024911
Uniprot:I3LDB7
Length = 507
Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
Identities = 223/506 (44%), Positives = 328/506 (64%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
++ +T G +LCC CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP
Sbjct: 7 SINRTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPG 66
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
TWI+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL
Sbjct: 67 TWIQCALESRELLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAIL 126
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A VQ+RQ H R F+Y+ ++ L +
Sbjct: 127 QQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVVQVRQKSYHIRQFYYMTKIYLSYILHENT 185
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+ + Q+ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVE
Sbjct: 186 LSVCQVLDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVE 245
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC+++++CL PK+A SLGN+ + +C++VT+ I L+DP TL+ +D + +W F
Sbjct: 246 IVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWTHPFN 305
Query: 308 SLLTSRQLVEYIVLDXXXX-----XXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTH 362
SL +QL E+IV++ K+ L + V + S+ + F RTH
Sbjct: 306 SLCHPKQLEEFIVMECSIVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLNPGD LG+DL + N ND ++K K +P+ +LIKK+Y+ KR + R+WKL
Sbjct: 365 LGHLLNPGDLVLGFDLANCNLNDEHVNKMKSDRIPDVVLIKKNYDRT---KRQRRRNWKL 421
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L + ++ TD E+ +Y++FL DLEE+ +R N+++YR+ P E S TD E
Sbjct: 422 KELARDRENMD--TDNER---QYQDFLEDLEEDEAIRKNVNIYRDPTI-PVE--SDTDDE 473
Query: 483 DVPSVPLDELLADLDLKSDDGEGDDS 508
P + L E+L DL + S D G+++
Sbjct: 474 GAPRISLAEMLEDLHI-SQDATGEEA 498
>CGD|CAL0001704 [details] [associations]
symbol:NMD3 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=IEA] CGD:CAL0001704 Pfam:PF04981 EMBL:AACQ01000183
EMBL:AACQ01000182 eggNOG:COG1499 HOGENOM:HOG000168152 KO:K07562
InterPro:IPR007064 RefSeq:XP_711779.1 RefSeq:XP_711797.1
STRING:Q59PZ4 GeneID:3646613 GeneID:3646614 KEGG:cal:CaO19.706
KEGG:cal:CaO19.8325 Uniprot:Q59PZ4
Length = 520
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 231/506 (45%), Positives = 323/506 (63%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG+PM + MC C++ VDITEG+ + +S C C+ +LQPP WI+
Sbjct: 18 VATVLCCNCGVPMDGSSGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWIR 77
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI++K+ VQ E + I++Q++
Sbjct: 78 AELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRIKITVQGEAMANTIVQQTFE 137
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH+A + I +
Sbjct: 138 VEYVVIAMQCPDCAKSYTT-NTWRATVQIRQKVPHKRTFLYLEQLILKHNAHVDTVSIQE 196
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HA K V+F+ VAP++ + ++LVS D S + +YK+++SVEI+PIC
Sbjct: 197 TKDGLDFFYAQKNHAAKMVDFLQAVAPIKVKKSEELVSMDIHSGSSSYKFSYSVEIAPIC 256
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A S+GN+ LV+C K+TN+I +DP TL+ L A +WRS F SLL +
Sbjct: 257 RDDLVVLPKKLAHSMGNISRLVLCNKITNAIQFMDPNTLQTADLSAPVFWRSPFPSLLDA 316
Query: 313 RQLVEYIVLDXXXXXXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
Q+VE+IVLD KYVLAD +V+R SD G ND F +RTHLG +L+PGD
Sbjct: 317 TQMVEFIVLDIEPTGDIRG----KYVLADIEVSRASDLGSNDQTFYVRTHLGGILHPGDS 372
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV--- 429
LGY L + N N D PE +++KK Y K K+SK R WKLK + E
Sbjct: 373 CLGYYLTNTNINSELWDTLDTDNTPEVVIVKKHYARKS--KKSKNRKWKLKRMAREHNDI 430
Query: 430 ---DDSK-GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS------EM--AS 477
DDS+ R +QE+ ++YE FL++LEE+ ELR I+LY+ + QP +M
Sbjct: 431 VANDDSRQARQEQERAERDYELFLQELEEDDELRQTINLYKAGENQPQVSRNHDDMNDED 490
Query: 478 VTDGEDVPSVPLDELLADLD-LKSDD 502
D ED P + +DELL +LD + DD
Sbjct: 491 EDDDEDAPEIGIDELLDELDDMTLDD 516
>POMBASE|SPAC16C9.03 [details] [associations]
symbol:nmd3 "export adaptor Nmd3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000027 "ribosomal
large subunit assembly" evidence=ISO] [GO:0000054 "ribosomal
subunit export from nucleus" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0015031 "protein transport"
evidence=IEA] PomBase:SPAC16C9.03 Pfam:PF04981 GO:GO:0005829
GO:GO:0005634 GO:GO:0005654 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0015031 GO:GO:0000027 GO:GO:0000054 eggNOG:COG1499
HOGENOM:HOG000168152 KO:K07562 OMA:PVCKDNV InterPro:IPR007064
PIR:S62473 RefSeq:NP_593077.1 STRING:Q09817
EnsemblFungi:SPAC16C9.03.1 GeneID:2542319 KEGG:spo:SPAC16C9.03
OrthoDB:EOG40311R NextBio:20803380 Uniprot:Q09817
Length = 498
Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
Identities = 212/491 (43%), Positives = 307/491 (62%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
++LCC+CG+P PNAA MC+ C++ DIT G+ + ++HC EC+ Y+QPP W+ A L
Sbjct: 21 TILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAPL 80
Query: 76 ESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
ES+EL+ C+K+L+ LN+VRLV+A FIWTEPHS+RIKVKL VQKE IL+QS+ VE+
Sbjct: 81 ESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEF 140
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
+ C C+R P W A Q+RQ V H+RTF YLEQ+ILKH A + I +
Sbjct: 141 YVNNTQCPDCARTYT-PHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETKD 199
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
GIDF+FG R+HA+K VEF+ V P+R + ++L+S D KSN NYK+T+S+EI PIC++D
Sbjct: 200 GIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVPICKDD 259
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQL 315
L+CLP VA + GN+ LV+C KV +I LDP TL+ C + YWR+ F +L +L
Sbjct: 260 LVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALADIPEL 319
Query: 316 VEYIVLDXXXXXXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALG 375
E+IV D KY LAD ++ + SD + T RTHLG +LN G+ L
Sbjct: 320 TEFIVADVDLLGPTNG----KYALADVELIKSSDGSTHLT----RTHLGGILNAGNTVLA 371
Query: 376 YDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGR 435
Y L N N+ D + +PE +++KK+Y + + K R+W+LK++ M+ + +
Sbjct: 372 YHLAVTNFNNEVYDTLREDSIPEVVIVKKTYPQTK----KKNRNWRLKTIGMQKAEDVKK 427
Query: 436 TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD---------GEDVPS 486
D E+ ++YE FL++LEE+PELR ++LY+ P + +V D ED+P
Sbjct: 428 QDIERQERDYELFLQNLEEDPELRQGVNLYK----APVKAIAVADTDMDEEDEVDEDIPQ 483
Query: 487 VPLDELLADLD 497
+ +DELL D++
Sbjct: 484 ISVDELLDDVE 494
>FB|FBgn0023542 [details] [associations]
symbol:Nmd3 "Nonsense-mediated mRNA 3" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] Pfam:PF04981
GO:GO:0022008 EMBL:AE014298 EMBL:AL009194 CTD:51068 eggNOG:COG1499
GeneTree:ENSGT00390000005104 KO:K07562 OMA:PVCKDNV
InterPro:IPR007064 EMBL:AY058494 RefSeq:NP_477332.1 UniGene:Dm.7201
IntAct:O46050 MINT:MINT-746738 STRING:O46050
EnsemblMetazoa:FBtr0070425 GeneID:31195 KEGG:dme:Dmel_CG3460
UCSC:CG3460-RA FlyBase:FBgn0023542 InParanoid:O46050
OrthoDB:EOG473N6G ChiTaRS:NMD3 GenomeRNAi:31195 NextBio:772403
Uniprot:O46050
Length = 521
Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
Identities = 215/500 (43%), Positives = 310/500 (62%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+ + PN ANMCV CLR+ VDITE + K ++ C C+ YLQPP WI+A LE
Sbjct: 25 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQAALE 84
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E++ G +L+Q +VVE+
Sbjct: 85 SRELLAICLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEIIGGTMLQQVFVVEFT 144
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q+ MC+ C R +A D W VQ+RQ +++TF+YLEQLILKH A + I G
Sbjct: 145 VQNQMCNDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEHGG 203
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ N +HA + V+F+ + P + K+L+SHD SNN+NYKY +SVEI+P+ ++
Sbjct: 204 LDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIAPVSKDSA 263
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K+ LGNL PLV+ +V++SI L+DP T + L + Y+R+ F+++ +QLV
Sbjct: 264 VCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAVCNPKQLV 323
Query: 317 EYIVLDXXXXXXXXXXX-------XXKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+V+D K+ L D V R S+ G ND R+HLGHLL
Sbjct: 324 EYVVMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNPIHTRSHLGHLLKV 383
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD +GY+ AN ND+E DK +P+ IL++K Y+ + R R WK+K L E
Sbjct: 384 GDSVMGYNTGEANINDLEFDKLSSDEIPDVILVRKHYDRQT---RLSQRVWKIKHLAAEA 440
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMASVTDGEDVPSVP 488
D + + D Y EFL DLEEN ++R +++YR+ + P E+ + G DVP +
Sbjct: 441 TDERSKYD-------YHEFLDDLEENEDIRGQVNIYRDTNKTIPIEVQAA--GGDVPQIT 491
Query: 489 LDELLADLDLK-SDDGEGDD 507
L+E+L D+ L+ +DD G++
Sbjct: 492 LEEMLEDMTLECADDEMGEE 511
>SGD|S000001213 [details] [associations]
symbol:NMD3 "Protein involved in nuclear export of the large
ribosomal subunit" species:4932 "Saccharomyces cerevisiae"
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0043023 "ribosomal large subunit binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000055
"ribosomal large subunit export from nucleus" evidence=IMP]
[GO:0006810 "transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
SGD:S000001213 Pfam:PF04981 GO:GO:0005829 GO:GO:0005654
GO:GO:0015031 EMBL:BK006934 EMBL:U00027 GO:GO:0000055 GO:GO:0043023
eggNOG:COG1499 GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
KO:K07562 OMA:PVCKDNV InterPro:IPR007064 OrthoDB:EOG40311R
EMBL:U31376 PIR:S48909 RefSeq:NP_012040.1 ProteinModelPortal:P38861
DIP:DIP-1827N IntAct:P38861 MINT:MINT-389613 STRING:P38861
PaxDb:P38861 PeptideAtlas:P38861 EnsemblFungi:YHR170W GeneID:856575
KEGG:sce:YHR170W NextBio:982429 Genevestigator:P38861
GermOnline:YHR170W Uniprot:P38861
Length = 518
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 212/509 (41%), Positives = 315/509 (61%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP W
Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQW 71
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI++KL VQ E + I++Q+
Sbjct: 72 IRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQT 131
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I
Sbjct: 132 FEVEYIVIAMQCPDCARSYTT-NTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 190
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI P
Sbjct: 191 SEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVP 250
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A S+GN+ V+C K++N++ +DP TL+ L YWR+ F +L
Sbjct: 251 ICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALA 310
Query: 311 TSRQLVEYIVLDXXXXXXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE+IVLD VLAD VAR SD G ND ++ +R+HLG + + G
Sbjct: 311 DVTQLVEFIVLDVDSTGISRGNR----VLADITVARTSDLGVNDQVYYVRSHLGGICHAG 366
Query: 371 DYALGYDLYSANNNDMELDKYKGL---VLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
D +GY + ++N N D + GL +P+ +L+KK Y+ RK K R WKLK +
Sbjct: 367 DSVMGYFIANSNYNS---DLFDGLNIDYVPDVVLVKKLYQ----RKSKKSRHWKLKRMAK 419
Query: 428 E---VD---DSKGRTDQEKMN---KEYEEFLRDLEENPELRFNISLYRNKDYQ--PSEMA 476
E +D D R +++M K+YE FL++LEE+ ELR +++LY+N++ P E
Sbjct: 420 EHKDIDASLDYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHE 479
Query: 477 SVTD-GEDVPSVPLDELLADLD-LKSDDG 503
D ED P + +DELL +LD + +DG
Sbjct: 480 MDEDEDEDAPQINIDELLDELDEMTLEDG 508
>UNIPROTKB|G4N0U7 [details] [associations]
symbol:MGG_05817 "Nonsense-mediated mRNA decay protein 3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF04981 EMBL:CM001233 GO:GO:0000055 GO:GO:0043023
GO:GO:0022625 KO:K07562 InterPro:IPR007064 RefSeq:XP_003712132.1
EnsemblFungi:MGG_05817T0 GeneID:2684158 KEGG:mgr:MGG_05817
Uniprot:G4N0U7
Length = 525
Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
Identities = 212/505 (41%), Positives = 316/505 (62%)
Query: 12 QTVGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ A +C C+++ DI++G+Q+ ++ C +CD +L PP +
Sbjct: 21 QNGATILCCNCGAPIDGTTATGALCYDCVKTTHDISQGVQREAVLHFCRDCDRWLLPPSS 80
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A ES+ELL C+K+LK LN+VR+V+A FIWTEPHS+R+++KL +Q V G +L+Q
Sbjct: 81 WIMAAPESRELLALCLKKLKGLNKVRIVDASFIWTEPHSRRVRLKLTIQDAVSEGVLLQQ 140
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ V Y+ C C++ + W A+VQ+RQ V H+RTF +LEQLILKH A I
Sbjct: 141 SFEVIYIVSYQQCPDCAK-SYTANVWRASVQVRQKVLHKRTFLFLEQLILKHGAHRDTIN 199
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + GIDFFF R+ A KFV+F+ PVR++ ++L+S D ++ +YK+TF VE+
Sbjct: 200 IKEAKDGIDFFFSARNQAEKFVDFLHSSVPVRTKKSQELISQDIHTSTKSYKFTFLVELI 259
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC+EDL+ LP K+A +GN+ PLV+C ++ S+ LDP TL+ + A YWR+ F+++
Sbjct: 260 PICKEDLVVLPIKLAKQIGNISPLVLCHRIGTSVNFLDPATLQTAEVSAPIYWRAPFRAI 319
Query: 310 LTSRQLVEYIVLDXXXXXXXXXXXXXKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
S+ LVE+IV+D ++ L +A VAR SD G ND + RTHL LL+
Sbjct: 320 AESKDLVEFIVMDVEPSGVHKG----RWSLGEATVARASDLGVNDRTYFARTHLSGLLHA 375
Query: 370 GDYALGYDLYSAN-NND----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD +GY L N NND +E G +P+ +L+KK Y+ R R R+K R+WKLK
Sbjct: 376 GDSVMGYMLTGTNFNNDEFQALEDSNSFGSTIPDVVLVKKHYQ--RRRNRNKNRNWKLKR 433
Query: 425 LDMEVDDS-KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN--KDYQP-SEMASVT- 479
++ + + + DQE+++ EYE+FLRD+EE+ ELR ++LY+N K +P ++ SV
Sbjct: 434 MNKDEGELLPKKADQERLDAEYEQFLRDVEEDEELRATLALYKNTKKTKKPDADAMSVAE 493
Query: 480 -----DGED--VPSVPLDELLADLD 497
D ED P V +DELL D++
Sbjct: 494 TEMTYDDEDDNAPKVSMDELLDDME 518
>WB|WBGene00012030 [details] [associations]
symbol:T25G3.3 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0071688 "striated muscle myosin
thick filament assembly" evidence=IMP] Pfam:PF04981 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0016246 GO:GO:0071688 GO:GO:0010171 GO:GO:0040011
GO:GO:0000003 EMBL:Z72516 eggNOG:COG1499
GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152 KO:K07562
InterPro:IPR007064 PIR:T25285 RefSeq:NP_492114.2
ProteinModelPortal:Q22792 STRING:Q22792 PaxDb:Q22792
EnsemblMetazoa:T25G3.3.1 EnsemblMetazoa:T25G3.3.2 GeneID:3565801
KEGG:cel:CELE_T25G3.3 UCSC:T25G3.3.1 CTD:3565801 WormBase:T25G3.3
InParanoid:Q22792 OMA:LTIQKEX NextBio:957909 Uniprot:Q22792
Length = 513
Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
Identities = 212/516 (41%), Positives = 310/516 (60%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
+ TVG + CC+CG+ + PN ANMC CLRS VDITEG+ + I C CD Y PP
Sbjct: 6 IKPTVGLIACCECGVAIEPNPANMCSGCLRSRVDITEGITRQCTIYMCKFCDRYFVPPSA 65
Query: 70 WIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W++A+LESKELL+ C+K+LK L +VRL +A F+WTE HSKRIKVK+ +QKEV IL+
Sbjct: 66 WMRAELESKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQ 125
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q+ VVE+ +CD C R +A D W A VQ+RQ ++T FYLEQL+LKH A
Sbjct: 126 QAVVVEFTVHSQLCDDCRRAEAK-DFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECT 184
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
+ + GIDF+F + A KFV+F+ V P + + ++LVSHD K+N ++YK+TF VEI
Sbjct: 185 GVKPVPTGIDFYFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCVEI 244
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PICR++++CLP K A GN+ +V+C++V+N I L+DP L+ + A +WR F S
Sbjct: 245 VPICRDNIVCLPKKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWREPFDS 304
Query: 309 LLTSRQLVEYIVLDXXXXXXXXXXXXXKYV-----LADAQVARVSDFGKNDT-IFSIRTH 362
L +QL E+ VLD YV LAD + R G +D S RTH
Sbjct: 305 LCGPKQLTEFYVLDVEPVNNFERKAGHGYVSKKHELADVWLVRSDQVGMSDAQSLSARTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
+GHLL+PGD + +D+ + N N+ D +P+ I+++K ++ R R+ +K R WKL
Sbjct: 365 IGHLLSPGDLVMAFDMKNCNVNNATFDAMNIDNVPDAIIVRKVFD--RTRRTAK-RQWKL 421
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L VD + + + E++ F+ D+EE+ +R I++Y++ + P+ D E
Sbjct: 422 KRL--VVDGNIVGNETASVADEFQGFMEDIEEDALMREKINIYKDAEKGPN--VDGDDAE 477
Query: 483 DVPSVP-LDELLADL-----DLK-SDDGEGDDSMRE 511
D P P L E+L DL ++K ++ E D++M+E
Sbjct: 478 DHPDAPTLAEMLDDLKFDDEEMKEAESAEDDEAMQE 513
>ASPGD|ASPL0000044316 [details] [associations]
symbol:AN1711 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0000055 "ribosomal large subunit export from
nucleus" evidence=IEA] Pfam:PF04981 EMBL:BN001307 EMBL:AACD01000026
GO:GO:0000055 GO:GO:0043023 GO:GO:0022625 eggNOG:COG1499
HOGENOM:HOG000168152 KO:K07562 OMA:PVCKDNV InterPro:IPR007064
OrthoDB:EOG40311R RefSeq:XP_659315.1 STRING:Q5BCL9
EnsemblFungi:CADANIAT00008354 GeneID:2875408 KEGG:ani:AN1711.2
Uniprot:Q5BCL9
Length = 511
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 212/522 (40%), Positives = 319/522 (61%)
Query: 1 MAQDA-GMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPE 59
MA A G +P T LC CG P+ +C C++ ++DI++G+Q+ +++ C +
Sbjct: 9 MAPQADGASEIPTT----LCYNCGAPLV--GTTICPDCMKLQIDISQGIQREAVLNFCRD 62
Query: 60 CDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQK 119
C+ +L PP +W A LES+ELL C+K+L+ LN++R+++A FIWTEPHS+RIKVKL +Q
Sbjct: 63 CERWLLPPNSWQVAALESRELLALCLKKLRGLNKIRVIDAGFIWTEPHSRRIKVKLTIQD 122
Query: 120 EVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLIL 179
V +G IL+Q++ V Y+ C C++ P+ W A+VQ+RQ V H+RTF YLEQLIL
Sbjct: 123 SVSDGVILQQTFEVIYIVMYQQCPECAK-SYTPNTWRASVQVRQQVLHKRTFLYLEQLIL 181
Query: 180 KHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFN 239
KH A I I + GIDFFF R+HA F++F+ PV +Q++S D ++ +
Sbjct: 182 KHKAHQNTINIKEAKNGIDFFFAQRNHAEAFIDFLHSAVPVEVTKSQQIISEDIHTSTKS 241
Query: 240 YKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
YK+T+S +I PIC++DL+ LP K+A LGN+ PL++C ++ SI+ LDP TL+ L++
Sbjct: 242 YKFTYSAKIVPICKDDLVALPIKLAKQLGNISPLLLCNRIGTSISFLDPNTLQSADLNSR 301
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDXXXXXXXXXXXXXKYVLADAQVARVSDFGKNDTIFSI 359
YWRS F SL ++ LVE+IVLD K+ ++ VAR SDF + F+
Sbjct: 302 IYWRSPFTSLAEAKDLVEFIVLDVEPTGHSRG----KWFQSEVTVARASDFSGDKQYFT- 356
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGL-----VLPETILIKKSYEEKRLRKR 414
RTHLG +++PGD LGY L N N+ + D+ + +P+ IL+KK Y R K
Sbjct: 357 RTHLGSIIHPGDSVLGYMLTGTNFNNAQFDEIESSNTYSSTIPDVILVKKFYP--RRSKH 414
Query: 415 SKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE 474
+K R+WKLK + E D ++E + ++E FLRD+EE+ ELR ++LY+NK +
Sbjct: 415 TK-RNWKLKRMATEHDPYLLPNNKESVENDFEMFLRDVEEDQELRATLALYKNKKKDDTM 473
Query: 475 MASVTD-----GEDVPSVPLDELLADLDLKSDDGEGDDSMRE 511
+ TD ++VP + +DELL D D D E DD+M++
Sbjct: 474 SVADTDMMNDDDDEVPKISMDELLDDFD----DLEIDDNMQD 511
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 511 498 0.00084 119 3 11 22 0.38 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 618 (66 KB)
Total size of DFA: 315 KB (2162 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.98u 0.13s 44.11t Elapsed: 00:00:02
Total cpu time: 43.98u 0.13s 44.11t Elapsed: 00:00:02
Start: Fri May 10 02:09:45 2013 End: Fri May 10 02:09:47 2013