BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010400
(511 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225430590|ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera]
Length = 510
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/511 (85%), Positives = 476/511 (93%), Gaps = 1/511 (0%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA++AGMF V QTVGSVLCCKCGIPM PNAANMCV CLRSE+DITEGLQKHV I HCPEC
Sbjct: 1 MAEEAGMFMVHQTVGSVLCCKCGIPMTPNAANMCVKCLRSEIDITEGLQKHVTIVHCPEC 60
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
D YLQPP+TWIKAQLESKELLTFCVKRLKNLN+VRL++AEFIWTEPHSKRIKVKL+VQKE
Sbjct: 61 DTYLQPPKTWIKAQLESKELLTFCVKRLKNLNKVRLIHAEFIWTEPHSKRIKVKLRVQKE 120
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
VLNGAILEQ+Y+VE+VQQ+HMC+SCSRVQANPDQWVA+VQLRQHV HRRTFFYLEQLIL+
Sbjct: 121 VLNGAILEQAYIVEFVQQEHMCESCSRVQANPDQWVASVQLRQHVPHRRTFFYLEQLILR 180
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
HDAA RAI+I QMDQGIDFFF NRSH VKFVEF+GKV P RSRHDKQLVSHD KSNN+NY
Sbjct: 181 HDAAGRAIKIKQMDQGIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNY 240
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ 300
KYTFSVEI PICREDLICLPPKVAVSLGNLGPLVIC KV+N+IALLDPFTLRHCFLDADQ
Sbjct: 241 KYTFSVEICPICREDLICLPPKVAVSLGNLGPLVICTKVSNNIALLDPFTLRHCFLDADQ 300
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR 360
YWRSSFK+LL+SRQLVEYIVLDVE+VSSEVNVGGSKY LADAQVARVSDFGKNDTIF+IR
Sbjct: 301 YWRSSFKALLSSRQLVEYIVLDVEIVSSEVNVGGSKYALADAQVARVSDFGKNDTIFNIR 360
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
THLGHLLNPGD+ALGYD+Y+AN+NDMEL+KY+G VLPE ILIKKSYEEKR RKR KPRSW
Sbjct: 361 THLGHLLNPGDHALGYDVYAANSNDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPRSW 420
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
KLKSL+MEVDDSKGR DQEKMN EYE FLRDLEE+PELRFNISLYRNK+YQPSEMAS+TD
Sbjct: 421 KLKSLNMEVDDSKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASMTD 480
Query: 481 GEDVPSVPLDELLADLDLKSDDGEGDDSMRE 511
GED+PSVPL E L S++ +GD SMRE
Sbjct: 481 GEDLPSVPL-EELLADLDLSEEEDGDVSMRE 510
>gi|147798057|emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera]
Length = 594
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/488 (87%), Positives = 463/488 (94%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA++AGMF V QTVGSVLCCKCGIPM PNAANMCV CLRSE+DITEGLQKHV I HCPEC
Sbjct: 1 MAEEAGMFMVHQTVGSVLCCKCGIPMTPNAANMCVKCLRSEIDITEGLQKHVTIVHCPEC 60
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
D YLQPP+TWIKAQLESKELLTFCVKRLKNLN+VRL++AEFIWTEPHSKRIKVKL+VQKE
Sbjct: 61 DTYLQPPKTWIKAQLESKELLTFCVKRLKNLNKVRLIHAEFIWTEPHSKRIKVKLRVQKE 120
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
VLNGAILEQ+Y+VE+VQQ+HMC+SCSRVQANPDQWVA+VQLRQHV HRRTFFYLEQLIL+
Sbjct: 121 VLNGAILEQAYIVEFVQQEHMCESCSRVQANPDQWVASVQLRQHVPHRRTFFYLEQLILR 180
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
HDAA RAI+I QMDQGIDFFF NRSH VKFVEF+GKV P RSRHDKQLVSHD KSNN+NY
Sbjct: 181 HDAAGRAIKIKQMDQGIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNY 240
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ 300
KYTFSVEI PICREDLICLPPKVAVSLGNLGP+VIC KV+N+IALLDPFTLRHCFLDADQ
Sbjct: 241 KYTFSVEICPICREDLICLPPKVAVSLGNLGPVVICTKVSNNIALLDPFTLRHCFLDADQ 300
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR 360
YWRSSFK+LL+SRQLVEYIVLDVE+VSSEVNVGGSKY LADAQVARVSDFGKNDTIF+IR
Sbjct: 301 YWRSSFKALLSSRQLVEYIVLDVEIVSSEVNVGGSKYALADAQVARVSDFGKNDTIFNIR 360
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
THLGHLLNPGD+ALGYD+Y+AN+NDMEL+KY+G VLPE ILIKKSYEEKR RKR KPRSW
Sbjct: 361 THLGHLLNPGDHALGYDVYAANSNDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPRSW 420
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
KLKSL+MEVDDSKGR DQEKMN EYE FLRDLEE+PELRFNISLYRNK+YQPSEMAS+TD
Sbjct: 421 KLKSLNMEVDDSKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASMTD 480
Query: 481 GEDVPSVP 488
GED+PSVP
Sbjct: 481 GEDLPSVP 488
>gi|255585695|ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
gi|223526598|gb|EEF28848.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
Length = 511
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/512 (82%), Positives = 464/512 (90%), Gaps = 2/512 (0%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA++AGMF V QT+GSVLCCKCGIPM PNA NMCV CLRSEVDITEGL+K VII HCPEC
Sbjct: 1 MAEEAGMFMVRQTIGSVLCCKCGIPMQPNAVNMCVKCLRSEVDITEGLKKRVIIKHCPEC 60
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQK 119
D YLQPP T IKAQLESKEL+TFCV+ L V LV+AEFIWTEPHSKRIK++ +VQK
Sbjct: 61 DTYLQPPYTRIKAQLESKELMTFCVRTLDLKHAGVTLVHAEFIWTEPHSKRIKLRCRVQK 120
Query: 120 EVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLIL 179
EV GA+LEQSY+VE+VQQ+ MC+SCSRVQANPDQWVA+VQLRQHV+HRRTFFYLEQLIL
Sbjct: 121 EVHRGAVLEQSYIVEFVQQESMCESCSRVQANPDQWVASVQLRQHVSHRRTFFYLEQLIL 180
Query: 180 KHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFN 239
KHDAAARAI+I QMDQGIDFFFGNRSH VKFVEF+GKVAPVRSRHDKQLVSHDPKSNN+N
Sbjct: 181 KHDAAARAIKIKQMDQGIDFFFGNRSHGVKFVEFLGKVAPVRSRHDKQLVSHDPKSNNYN 240
Query: 240 YKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
YKYTFSVEISPICREDL+CLPPKVAVSLGNLGPLVIC KVTNSIALLDP TLRHC+LD D
Sbjct: 241 YKYTFSVEISPICREDLVCLPPKVAVSLGNLGPLVICTKVTNSIALLDPLTLRHCYLDGD 300
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
QYWRSSFKSLLTSRQLVEYIVLDV+++S EVN+G SKY +A+ QVAR+SDFGKNDTIF I
Sbjct: 301 QYWRSSFKSLLTSRQLVEYIVLDVDIISPEVNIGSSKYAMAEVQVARLSDFGKNDTIFFI 360
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
+THLGH+L PGD ALGYDLY AN+ND+ELDKYKGLVLPE ILIKKSYEEKR RKR KPR+
Sbjct: 361 KTHLGHILKPGDQALGYDLYGANSNDIELDKYKGLVLPEAILIKKSYEEKRQRKRGKPRA 420
Query: 420 WKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT 479
WKLKSL+MEVDDS+GR DQEKM+ EYE+FLRDLEEN ELRFN+SLYRNK+YQPSEMASVT
Sbjct: 421 WKLKSLEMEVDDSRGRNDQEKMDTEYEQFLRDLEENAELRFNVSLYRNKEYQPSEMASVT 480
Query: 480 DGEDVPSVPLDELLADLDLKSDDGEGDDSMRE 511
DGEDVPS+PL+ELLADLD+ + DD MRE
Sbjct: 481 DGEDVPSIPLEELLADLDISEMEDAADD-MRE 511
>gi|224080157|ref|XP_002306035.1| predicted protein [Populus trichocarpa]
gi|222848999|gb|EEE86546.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/512 (80%), Positives = 465/512 (90%), Gaps = 2/512 (0%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA++AGMF V QT+GSVLCCKCGIPM PNAANMCV CLRSEVDITEGL+K+VI+ HCPEC
Sbjct: 1 MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCPEC 60
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQK 119
D YL PP T I+AQLES+EL+ FC+K+LK V LVNAEFIWTEPHSKRIK++++VQK
Sbjct: 61 DTYLDPPSTRIRAQLESRELMAFCLKKLKLKSTGVILVNAEFIWTEPHSKRIKLRVRVQK 120
Query: 120 EVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLIL 179
EVL+GAILEQ+YV+EYVQQD MCDSC+RVQANPDQWVA VQLRQHV HRRTFFYLEQLIL
Sbjct: 121 EVLHGAILEQAYVIEYVQQDQMCDSCTRVQANPDQWVAGVQLRQHVAHRRTFFYLEQLIL 180
Query: 180 KHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFN 239
KHDAAARAI+I QMD GIDFFF NRSH VKFV+FVGKVAPV+SR+DKQLVSHD KSNN+N
Sbjct: 181 KHDAAARAIKIKQMDHGIDFFFANRSHGVKFVDFVGKVAPVKSRNDKQLVSHDTKSNNYN 240
Query: 240 YKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
YK+TFSVEISPICREDL+CLPP+VAVSLGNLGPLVIC KVTNSIALLDPFTLRHCFLDAD
Sbjct: 241 YKHTFSVEISPICREDLVCLPPRVAVSLGNLGPLVICSKVTNSIALLDPFTLRHCFLDAD 300
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
QYWR+ FKSLLTSRQLVEYIV DV+ VS EVN+GGS+Y LADA VAR+SDFGKNDT+F+I
Sbjct: 301 QYWRTPFKSLLTSRQLVEYIVFDVDFVSPEVNIGGSRYALADATVARMSDFGKNDTMFNI 360
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
+THLGH+L PGDYALGYDL+ AN+NDMELDKYK LV+PE IL+KKSYEEKR RKR KPRS
Sbjct: 361 KTHLGHILKPGDYALGYDLHGANSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKPRS 420
Query: 420 WKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT 479
WKLKSL+MEVDD++ R DQEKMN EYE+FLRDLEENPELRFN+SLYRNK+YQPSEMAS+T
Sbjct: 421 WKLKSLNMEVDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQPSEMASMT 480
Query: 480 DGEDVPSVPLDELLADLDLKSDDGEGDDSMRE 511
DGED+PS+PL+ELLADL++ + E D+ M E
Sbjct: 481 DGEDIPSIPLEELLADLEINDAEDE-DEGMGE 511
>gi|449504862|ref|XP_004162315.1| PREDICTED: 60S ribosomal export protein NMD3-like [Cucumis sativus]
Length = 505
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/511 (81%), Positives = 460/511 (90%), Gaps = 6/511 (1%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA + G+F+V QT+G+VLCCKCGIPMAPNAANMCV CL SEVDITEGLQK + I HCP+C
Sbjct: 1 MAAETGLFSVQQTIGTVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
+ YLQPPRTWIKAQLESKELLTFC+KRL+NLN+V+LV+AEF+WTEPHSKRIKVKLKVQKE
Sbjct: 61 ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
VL GAILEQSYV EYV QDH+C+SCSR+QANPDQWVA+VQLRQHV HRRTFF+LEQLILK
Sbjct: 121 VLQGAILEQSYVAEYVVQDHLCESCSRIQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
H AAA AIRI QMDQGIDFFF NRSH VKFVEFVGKVAP+RSRHDKQLVSHDPKSN N+
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ 300
K+TFSVEISPICREDLICLPPKVAVSLGNLGPLVIC KVTN+IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDADQ 300
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR 360
YWR+SF+SLLTSRQLVEY+VLD+E VS+EVNV GSKY+LA AQVARVSDFG+NDT+FSI+
Sbjct: 301 YWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFSIK 360
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
THLGH+LNPGDYALGYDLY AN+NDMEL+KYKGL LPE ILIKKSYEEKR RKR KPRSW
Sbjct: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKRGKPRSW 420
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
KLKSL M+VDD K + D+ KMN EYE+FLRDLEENP+LRFNISLYRN++YQPSE +TD
Sbjct: 421 KLKSLSMDVDD-KTKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSE---ITD 476
Query: 481 GEDVPSVPLDELLADLDLKSDDGEGDDSMRE 511
GED PSVP DL +GEGDD+M E
Sbjct: 477 GEDGPSVP--LEELLADLDLSEGEGDDAMNE 505
>gi|224079509|ref|XP_002305882.1| predicted protein [Populus trichocarpa]
gi|222848846|gb|EEE86393.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/495 (81%), Positives = 455/495 (91%), Gaps = 1/495 (0%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA++AGMF V QT+GSVLCCKCGIPM PNAANMCV CLRSEVDITEGL+K+VI+ HCPEC
Sbjct: 1 MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCPEC 60
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQK 119
D YL PP T I+AQLES+EL+ FC+K+LK V LVNAEFIWTEPHSKRIK++++VQK
Sbjct: 61 DTYLDPPSTRIRAQLESRELMAFCLKKLKLKSTGVILVNAEFIWTEPHSKRIKLRVRVQK 120
Query: 120 EVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLIL 179
EVL+GAILEQ+YV+EYVQQD MCDSC+RVQANPDQWVA VQLRQHV HRRTFFYLEQLIL
Sbjct: 121 EVLHGAILEQAYVIEYVQQDQMCDSCTRVQANPDQWVAGVQLRQHVAHRRTFFYLEQLIL 180
Query: 180 KHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFN 239
KHDAAARAI+I QMD GIDFFF NRSH VKFV+FVGKVAPV+SR+DKQLVSHD KSNN+N
Sbjct: 181 KHDAAARAIKIKQMDHGIDFFFANRSHGVKFVDFVGKVAPVKSRNDKQLVSHDTKSNNYN 240
Query: 240 YKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
YK+TFSVEISPICREDL+CLPP+VAVSLGNLGPLVIC KVTNSIALLDPFTLRHCFLDAD
Sbjct: 241 YKHTFSVEISPICREDLVCLPPRVAVSLGNLGPLVICSKVTNSIALLDPFTLRHCFLDAD 300
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
QYWR+ FKSLLTSRQLVEYIV DV+ VS EVN+GGS+Y LADA VAR+SDFGKNDT+F+I
Sbjct: 301 QYWRTPFKSLLTSRQLVEYIVFDVDFVSPEVNIGGSRYALADATVARMSDFGKNDTMFNI 360
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
+THLGH+L PGDYALGYDL+ AN+NDMELDKYK LV+PE IL+KKSYEEKR RKR KPRS
Sbjct: 361 KTHLGHILKPGDYALGYDLHGANSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKPRS 420
Query: 420 WKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT 479
WKLKSL+MEVDD++ R DQEKMN EYE+FLRDLEENPELRFN+SLYRNK+YQPSEMAS+T
Sbjct: 421 WKLKSLNMEVDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQPSEMASMT 480
Query: 480 DGEDVPSVPLDELLA 494
DGED+PS+PL+ELLA
Sbjct: 481 DGEDIPSIPLEELLA 495
>gi|449451509|ref|XP_004143504.1| PREDICTED: 60S ribosomal export protein NMD3-like [Cucumis sativus]
Length = 505
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/511 (81%), Positives = 459/511 (89%), Gaps = 6/511 (1%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA + G+F+V QT+G+VLCCKCGIPMAPNAANMCV CL SEVDITEGLQK + I HCP+C
Sbjct: 1 MAAETGLFSVQQTIGTVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
+ YLQPPRTWIKAQLESKELLTFC+KRL+NLN+V+LV+AEF+WTEPHSKRIKVKLKVQKE
Sbjct: 61 ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
VL GAILEQSYV EYV QDH+C+SCSR+QANPDQWVA+VQLRQHV HRRTFF+LEQLILK
Sbjct: 121 VLQGAILEQSYVAEYVVQDHLCESCSRIQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
H AAA AIRI QMDQGIDFFF NRSH VKFVEFVGKVAP+RSRHDKQLVSHDPKSN N+
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ 300
K+TFSVEISPICREDLICLPPKVAVSLGNLGPLVIC KVTN+IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDADQ 300
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR 360
YWR+SF+SLLTSRQLVEY+VLD+E VS+EVNV GSKY+LA AQVARVSDFG+NDT+FSI+
Sbjct: 301 YWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFSIK 360
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
THLGH+LNPGDYALGYDLY AN+NDMEL+KYKGL LPE ILIKKSYEEKR RK KPRSW
Sbjct: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKHGKPRSW 420
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
KLKSL M+VDD K + D+ KMN EYE+FLRDLEENP+LRFNISLYRN++YQPSE +TD
Sbjct: 421 KLKSLSMDVDD-KTKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSE---ITD 476
Query: 481 GEDVPSVPLDELLADLDLKSDDGEGDDSMRE 511
GED PSVP DL +GEGDD+M E
Sbjct: 477 GEDGPSVP--LEELLADLDLSEGEGDDAMNE 505
>gi|356539804|ref|XP_003538383.1| PREDICTED: 60S ribosomal export protein NMD3-like [Glycine max]
Length = 510
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/491 (82%), Positives = 448/491 (91%), Gaps = 12/491 (2%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MAQ++GMF V QT+GSVLCCKCGIPM PNAANMCV CLRSEVDITEGL K +++ HCPEC
Sbjct: 7 MAQESGMFMVNQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPEC 66
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLK---NLNRVRLVNAEFIWTEPHSKRIKVKLKV 117
+ YLQPPR+W+K QLESKELLTFC+K+L+ N N+VRLV+AEFIWTEPHS+R+KVK+KV
Sbjct: 67 ESYLQPPRSWVKLQLESKELLTFCLKKLQKNLNSNKVRLVHAEFIWTEPHSRRVKVKVKV 126
Query: 118 QKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQL 177
QKEVLNGAILEQSY VEYVQQ+HMC+SCSRVQANPDQWVAAVQLRQHV+HRRTFFYLEQL
Sbjct: 127 QKEVLNGAILEQSYPVEYVQQEHMCESCSRVQANPDQWVAAVQLRQHVSHRRTFFYLEQL 186
Query: 178 ILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNN 237
ILKH AAA AIRI QM+QGIDFFF NRSH VKFVEF+GKV+PVRSRHDKQLVSHDPKSNN
Sbjct: 187 ILKHGAAATAIRIKQMEQGIDFFFSNRSHGVKFVEFIGKVSPVRSRHDKQLVSHDPKSNN 246
Query: 238 FNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLD 297
+NYKYTFSVEISPICREDLICLPP+VAVSLGN+GPLVIC KVTNSIALLDPFTLRHCF+D
Sbjct: 247 YNYKYTFSVEISPICREDLICLPPRVAVSLGNIGPLVICTKVTNSIALLDPFTLRHCFID 306
Query: 298 ADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIF 357
ADQYWR+SFKSLLTSRQLVEYIVLDVE VSSEV +GG+KY LADAQVARVSDFGKNDTIF
Sbjct: 307 ADQYWRTSFKSLLTSRQLVEYIVLDVETVSSEVTIGGTKYRLADAQVARVSDFGKNDTIF 366
Query: 358 SIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKP 417
+I+THLGHLLNPGDYALGYDLY AN+NDMELDKYKG + PE ILIKKSYEEK +KR KP
Sbjct: 367 NIKTHLGHLLNPGDYALGYDLYGANSNDMELDKYKGHI-PEAILIKKSYEEKHQKKRGKP 425
Query: 418 RSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMAS 477
RSWKLKSL+MEVDD KGR D++KM EYE+F++DLEENPE+RFNISLYRNK+Y+PS
Sbjct: 426 RSWKLKSLEMEVDD-KGRVDEDKMVSEYEQFIQDLEENPEMRFNISLYRNKEYKPS---- 480
Query: 478 VTDGEDVPSVP 488
DG D SVP
Sbjct: 481 --DG-DESSVP 488
>gi|356569760|ref|XP_003553064.1| PREDICTED: 60S ribosomal export protein NMD3-like [Glycine max]
Length = 510
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/491 (81%), Positives = 446/491 (90%), Gaps = 12/491 (2%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MAQ++GMF V QT+GSVLCCKCGIPM PNAANMCV CLRSEVDITEGL K +++ HCPEC
Sbjct: 7 MAQESGMFMVSQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPEC 66
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLK---NLNRVRLVNAEFIWTEPHSKRIKVKLKV 117
+ YLQPPR+W+K QLESKELLTFC+K+L+ N N+VRLV+AEFIWTEPHS+R+KVK+KV
Sbjct: 67 ESYLQPPRSWVKLQLESKELLTFCLKKLQKNLNSNKVRLVHAEFIWTEPHSRRVKVKVKV 126
Query: 118 QKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQL 177
QKEVLNGAILEQSY VEYVQQ+HMC+SCSRVQANPDQWVA+VQLRQHV+HRRTFFYLEQL
Sbjct: 127 QKEVLNGAILEQSYPVEYVQQEHMCESCSRVQANPDQWVASVQLRQHVSHRRTFFYLEQL 186
Query: 178 ILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNN 237
ILKH AAA AIRI QM+QGIDFFF NRSH VKFVEF+GKVAPVRSRHDKQLVSHDPKSNN
Sbjct: 187 ILKHGAAATAIRIKQMEQGIDFFFSNRSHGVKFVEFIGKVAPVRSRHDKQLVSHDPKSNN 246
Query: 238 FNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLD 297
+NYKYTFSVEISPICREDLICLPP+VA LGN+GPLVIC KVT+SIALLDPFTLRHCF+D
Sbjct: 247 YNYKYTFSVEISPICREDLICLPPRVAAGLGNIGPLVICTKVTSSIALLDPFTLRHCFID 306
Query: 298 ADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIF 357
ADQYWR+SFKSLLTSRQLVEYIVLDVE VSSEV +GG+KY LADAQVARVSDFGKNDTIF
Sbjct: 307 ADQYWRASFKSLLTSRQLVEYIVLDVETVSSEVTIGGTKYRLADAQVARVSDFGKNDTIF 366
Query: 358 SIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKP 417
+I+THLGHLLNPGDYALGYDLY AN+NDME DKYKG + PE ILIKKSYEEK +KR KP
Sbjct: 367 NIKTHLGHLLNPGDYALGYDLYGANSNDMEFDKYKGHI-PEAILIKKSYEEKHQKKRGKP 425
Query: 418 RSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMAS 477
RSWKLKSL+MEVDD KGR DQ+KM EYE+F++DLEENPE+RFNISLYRNK+Y+PS
Sbjct: 426 RSWKLKSLEMEVDD-KGRVDQDKMVSEYEQFIQDLEENPEMRFNISLYRNKEYKPS---- 480
Query: 478 VTDGEDVPSVP 488
DG+D SVP
Sbjct: 481 --DGDD-SSVP 488
>gi|357460773|ref|XP_003600668.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355489716|gb|AES70919.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 505
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/506 (77%), Positives = 443/506 (87%), Gaps = 11/506 (2%)
Query: 7 MFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66
MF V QT+GSVLCCKCGI M PNAANMCV CLRSEVDITEGL K +++ HCPEC+ YLQP
Sbjct: 1 MFKVHQTIGSVLCCKCGIRMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPECESYLQP 60
Query: 67 PRTWIKAQLESKELLTFCVKRLK---NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
PRTW+K QLESKELLTFC+K+L+ N+N+ +LVNAEFIWTEPHSKR+KVK+ VQKEV +
Sbjct: 61 PRTWVKLQLESKELLTFCLKKLQKNMNINKAKLVNAEFIWTEPHSKRVKVKVSVQKEVYH 120
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
GAILEQSY VEYVQQDHMC+SCSRV ANPDQW+AAVQLRQHV+HRRTF+YLEQLIL+H A
Sbjct: 121 GAILEQSYPVEYVQQDHMCESCSRVAANPDQWIAAVQLRQHVSHRRTFYYLEQLILRHGA 180
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
AARAIRI QMD GIDF+F NRSH +KFVEFVGKVAPV+SR DKQLVSHD KSNN+NYKYT
Sbjct: 181 AARAIRIKQMDHGIDFYFSNRSHGIKFVEFVGKVAPVKSRSDKQLVSHDSKSNNYNYKYT 240
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
FSVEISPICREDLICLPPK A LGN+GP+VIC KVTNSIALLDP TL+ FLDA+QYWR
Sbjct: 241 FSVEISPICREDLICLPPKAAAILGNIGPIVICTKVTNSIALLDPLTLKFGFLDAEQYWR 300
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
+SFKSLLTSRQLVEYIVLDVEVVSSEVNVGG+KY LADAQVARVSDFGKNDT+FSIRTHL
Sbjct: 301 TSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGTKYALADAQVARVSDFGKNDTMFSIRTHL 360
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
GHLL PGD ALGYDLY+AN+NDMELD+YKG + PE +LIKKSY EKR K RS+KLK
Sbjct: 361 GHLLKPGDNALGYDLYAANSNDMELDRYKGNI-PEVVLIKKSYPEKR-----KTRSFKLK 414
Query: 424 SLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
+ ME DD K + +++K + EYE FL++LEENPELRFNISLY+NKDYQPSE+ASVTDGE+
Sbjct: 415 RIPMEADD-KIKVNEDKRSAEYELFLKELEENPELRFNISLYQNKDYQPSEVASVTDGEE 473
Query: 484 VPSVPLDELLADL-DLKSDDGEGDDS 508
PSVP DELL L DL +GEGDD
Sbjct: 474 APSVPWDELLTGLEDLDLSEGEGDDG 499
>gi|157276571|gb|ABV28352.1| nonsense-mediated mRNA decary protein 3 [Taiwania cryptomerioides]
Length = 515
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/495 (72%), Positives = 425/495 (85%), Gaps = 1/495 (0%)
Query: 5 AGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYL 64
A MFTV +T+G VLCC CGI M PNAANMCV C+RS+VDITEGLQKHV I HCPEC YL
Sbjct: 8 ADMFTVQKTMGQVLCCMCGISMPPNAANMCVNCIRSQVDITEGLQKHVTILHCPECSSYL 67
Query: 65 QPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNG 124
QPP+TWIKAQLESKELLTFC+KRLKNLN+VRLV+AEFIWTEPHSKRIK+KL++QKEVLNG
Sbjct: 68 QPPKTWIKAQLESKELLTFCIKRLKNLNKVRLVHAEFIWTEPHSKRIKIKLRIQKEVLNG 127
Query: 125 AILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAA 184
AILEQ+YVVEYVQQ++MCD+C RVQ NPDQ+VA VQ+RQHV+HRRTFFYLEQLILKH AA
Sbjct: 128 AILEQAYVVEYVQQENMCDNCRRVQTNPDQYVAVVQVRQHVSHRRTFFYLEQLILKHGAA 187
Query: 185 ARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTF 244
++A+ I Q+ +G+DF+F NRSH KFV F+G V P +R+DKQLVS D K++ +NYKYTF
Sbjct: 188 SQAVNIKQVHEGVDFYFANRSHGSKFVNFLGSVVPTLNRNDKQLVSQDIKNSTYNYKYTF 247
Query: 245 SVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRS 304
SV+I PIC+EDLICLPPKV+ SLGNLGPLV+C KV+ +I LLDPFT RH F+DA+QYWR
Sbjct: 248 SVQICPICKEDLICLPPKVSSSLGNLGPLVLCTKVSTNIMLLDPFTSRHAFMDANQYWRV 307
Query: 305 SFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLG 364
F+ LL+ RQLVEYIVLD+EV + VGG KY LADAQVARVSDFGKNDTIF+++THLG
Sbjct: 308 PFRPLLSGRQLVEYIVLDIEVNVGLITVGGMKYSLADAQVARVSDFGKNDTIFNVKTHLG 367
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
HLLNPGDYALG+DLY AN ND+E+DKYKGL LP+ +L+KKSYEEKR +KR KPR WKL +
Sbjct: 368 HLLNPGDYALGFDLYGANTNDLEMDKYKGLNLPDVVLVKKSYEEKRQKKRGKPRPWKLNN 427
Query: 425 LDMEVD-DSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
L MEV+ SKGRT+ K ++YE+FL +LEE+ E+R I+LYRNK+YQPSE AS+TDGED
Sbjct: 428 LPMEVEPSSKGRTEDAKEVQDYEKFLEELEEDQEMRSKIALYRNKNYQPSETASMTDGED 487
Query: 484 VPSVPLDELLADLDL 498
P+VPL+ELL DL L
Sbjct: 488 GPAVPLEELLNDLTL 502
>gi|15227711|ref|NP_178476.1| nonsense-mediated mRNA decay protein 3 [Arabidopsis thaliana]
gi|4582430|gb|AAD24816.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
gi|20466624|gb|AAM20629.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
gi|22136400|gb|AAM91278.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
gi|330250660|gb|AEC05754.1| nonsense-mediated mRNA decay protein 3 [Arabidopsis thaliana]
Length = 516
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/498 (72%), Positives = 419/498 (84%), Gaps = 6/498 (1%)
Query: 4 DAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
++GMF V QT+GSVLCCKCG+PMAPNAANMCV CLRSEVDITEGLQK + I +CPEC CY
Sbjct: 6 ESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTCY 65
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
LQPP+TWIK Q ESKELLTFC+KRLKNLN+V+L NAEF+WTEPHSKRIKVKL VQ EVLN
Sbjct: 66 LQPPKTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLN 125
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
GA+LEQSY VEY +D++C+SCSR QANPDQWVA++QLRQHV+HRRTFFYLEQLIL+HDA
Sbjct: 126 GAVLEQSYPVEYTVRDNLCESCSRFQANPDQWVASIQLRQHVSHRRTFFYLEQLILRHDA 185
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
A+RAIRI Q+DQGIDFFFGN+SHA FVEF+ KV P+ R D+QLVSHD KS+ +NYKYT
Sbjct: 186 ASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKYT 245
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
+SV+I P+CREDL+CLP KVA LGNLGPLV+C KV+++I LLDP TLR FLDA QYWR
Sbjct: 246 YSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLDARQYWR 305
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
S F+S LTSRQLV+Y V DVE E VGG KY L+ Q+AR SD GK +F ++THL
Sbjct: 306 SGFRSALTSRQLVKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGK---MFYVQTHL 362
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLV---LPETILIKKSYEEKRLRKRSKPRSW 420
GH+L PGD ALGYD+Y AN ND E++KY+ V LPE ILIKK YEE+R RK+ K R+W
Sbjct: 363 GHILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKKSRNW 422
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
KLKSL ME+DDS+GR D EK +KEYEEFLRDLEENPELRFNISLYR+KDYQ SE AS+TD
Sbjct: 423 KLKSLPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYRDKDYQASETASMTD 482
Query: 481 GEDVPSVPLDELLADLDL 498
GE PSVP++ELLADLDL
Sbjct: 483 GEGAPSVPIEELLADLDL 500
>gi|297818032|ref|XP_002876899.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322737|gb|EFH53158.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 516
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/498 (72%), Positives = 419/498 (84%), Gaps = 6/498 (1%)
Query: 4 DAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
++GMF V QT+GSVLCCKCG+PMAPNAANMCV CLRSEVDITEGLQK + I +CPEC CY
Sbjct: 6 ESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTCY 65
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
LQPP+TWIK Q ESKELLTFC+KRLKNLN+V+L NAEF+WTEPHSKRIKVKL VQ EVLN
Sbjct: 66 LQPPKTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLN 125
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
GA+LEQSY VEY +D++C+SCSR QANPDQWVA VQLRQHV+HRRTFFYLEQLIL+HDA
Sbjct: 126 GAVLEQSYPVEYTVRDNLCESCSRFQANPDQWVALVQLRQHVSHRRTFFYLEQLILRHDA 185
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
A+RAIRI Q+DQGIDFFFGN+SHA FVEF+ KV P+ R D+QLVSHD KS+ +NYKYT
Sbjct: 186 ASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKYT 245
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
+SV+I P+CREDL+CLP KVA LGNLGPLVIC KV+++I LLDP TLR FLDA QYWR
Sbjct: 246 YSVKICPVCREDLVCLPSKVASGLGNLGPLVICTKVSDNITLLDPRTLRCAFLDARQYWR 305
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
S F+S LTSRQLV+Y V DVE SE VGG KY L+ Q+AR SD GK +F ++THL
Sbjct: 306 SGFRSALTSRQLVKYFVFDVEPPVSEATVGGQKYALSYVQIARESDIGK---MFYVQTHL 362
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLV---LPETILIKKSYEEKRLRKRSKPRSW 420
GH+L PGD ALGYD+Y AN ND E++KY+ V LPE ILIKK YEE+R RK+ K R+W
Sbjct: 363 GHILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKKSRNW 422
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
KLKSL ME+DDS+GR D EK +KEYEEFLRDLEENPELRFNISLY++KDYQ SE AS+TD
Sbjct: 423 KLKSLPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYKDKDYQASETASMTD 482
Query: 481 GEDVPSVPLDELLADLDL 498
GE PSVP++ELLADLDL
Sbjct: 483 GEGAPSVPIEELLADLDL 500
>gi|15810403|gb|AAL07089.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
Length = 516
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/498 (72%), Positives = 418/498 (83%), Gaps = 6/498 (1%)
Query: 4 DAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
++GMF V QT+GSVLCCKCG+PMAPNAANM V CLRSEVDITEGLQK + I +CPEC CY
Sbjct: 6 ESGMFNVQQTIGSVLCCKCGVPMAPNAANMRVNCLRSEVDITEGLQKSIQIFYCPECTCY 65
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
LQPP+TWIK Q ESKELLTFC+KRLKNLN+V+L NAEF+WTEPHSKRIKVKL VQ EVLN
Sbjct: 66 LQPPKTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLN 125
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
GA+LEQSY VEY +D++C+SCSR QANPDQWVA++QLRQHV+HRRTFFYLEQLIL+HDA
Sbjct: 126 GAVLEQSYPVEYTVRDNLCESCSRFQANPDQWVASIQLRQHVSHRRTFFYLEQLILRHDA 185
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
A+RAIRI Q+DQGIDFFFGN+SHA FVEF+ KV P+ R D+QLVSHD KS+ +NYKYT
Sbjct: 186 ASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKYT 245
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
+SV+I P+CREDL+CLP KVA LGNLGPLV+C KV+++I LLDP TLR FLDA QYWR
Sbjct: 246 YSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLDARQYWR 305
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
S F+S LTSRQLV+Y V DVE E VGG KY L+ Q+AR SD GK +F ++THL
Sbjct: 306 SGFRSALTSRQLVKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGK---MFYVQTHL 362
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLV---LPETILIKKSYEEKRLRKRSKPRSW 420
GH+L PGD ALGYD+Y AN ND E++KY+ V LPE ILIKK YEE+R RK+ K R+W
Sbjct: 363 GHILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKKSRNW 422
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
KLKSL ME+DDS+GR D EK +KEYEEFLRDLEENPELRFNISLYR+KDYQ SE AS+TD
Sbjct: 423 KLKSLPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYRDKDYQASETASMTD 482
Query: 481 GEDVPSVPLDELLADLDL 498
GE PSVP++ELLADLDL
Sbjct: 483 GEGAPSVPIEELLADLDL 500
>gi|302774853|ref|XP_002970843.1| hypothetical protein SELMODRAFT_94368 [Selaginella moellendorffii]
gi|300161554|gb|EFJ28169.1| hypothetical protein SELMODRAFT_94368 [Selaginella moellendorffii]
Length = 516
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/500 (67%), Positives = 409/500 (81%), Gaps = 4/500 (0%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA G F VPQT G+VLCC CG+ M+PN ANMCV+CLRS+VDITEGLQKHV + +CPEC
Sbjct: 3 MAATDGTFLVPQTQGTVLCCLCGVAMSPNPANMCVSCLRSQVDITEGLQKHVTVLYCPEC 62
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
+ YLQPPR WIKA LES+ELLTFC+KRLKNLNRVRLV+A F+WTEPHSKR+KVKLK+QKE
Sbjct: 63 ERYLQPPRCWIKAGLESRELLTFCIKRLKNLNRVRLVDAGFVWTEPHSKRLKVKLKIQKE 122
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
V++GAILEQSY VE+V QDHMC++CSR ANPDQWVAAVQLRQ V H+RTFF+LEQLILK
Sbjct: 123 VMHGAILEQSYTVEFVVQDHMCEACSRAAANPDQWVAAVQLRQKVDHKRTFFFLEQLILK 182
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
H AAA AI I QM +GIDFFF +RSHA+KFV+FV V PV+SR+DKQLVSHD K+N++NY
Sbjct: 183 HAAAALAINIKQMHEGIDFFFSSRSHALKFVDFVSSVVPVKSRNDKQLVSHDTKNNSYNY 242
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ 300
K+TFSVEI P+C++DL+CLP KVA LGN+GPLV+C +V+N++ LLD TLR F+DA Q
Sbjct: 243 KFTFSVEICPVCKDDLVCLPQKVAAGLGNIGPLVLCTRVSNTLMLLDTQTLRSAFVDASQ 302
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR 360
YWR +++L++SRQLVEY+VLD+E + S KYVLA AQV R SDFGKNDT+F++R
Sbjct: 303 YWRVPYRALISSRQLVEYVVLDIE-IDSPAESSSQKYVLAHAQVVRSSDFGKNDTMFNVR 361
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
THLGHLL PGDYALGYDLY AN ND+EL+KY+GLVLPE +L+KKSYEEKR R+R K R W
Sbjct: 362 THLGHLLRPGDYALGYDLYGANTNDLELEKYRGLVLPEVVLVKKSYEEKRQRRRGKARPW 421
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN--KDYQPSEMASV 478
KLKSL+M+VD+S G ++ K EYE F+ +LEE+PE+R I+L++N PS
Sbjct: 422 KLKSLEMDVDESTGGKEESKRAVEYERFMEELEEDPEMRSKIALFKNPVAVAAPSIAGED 481
Query: 479 TDGEDVPSVPLDELLADLDL 498
DGE +P VPL+ELL DL L
Sbjct: 482 EDGE-LPQVPLEELLGDLTL 500
>gi|302772306|ref|XP_002969571.1| hypothetical protein SELMODRAFT_91517 [Selaginella moellendorffii]
gi|300163047|gb|EFJ29659.1| hypothetical protein SELMODRAFT_91517 [Selaginella moellendorffii]
Length = 516
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/499 (66%), Positives = 409/499 (81%), Gaps = 2/499 (0%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA G F VPQT G+VLCC CG+ MAPN ANMCV+CLRS+VDITEGLQKHV + +CPEC
Sbjct: 3 MAATDGTFLVPQTQGTVLCCLCGVAMAPNPANMCVSCLRSQVDITEGLQKHVTVLYCPEC 62
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
+ YLQPPR WIKA LES+ELLTFC+KRLKNLNRVRLV+A F+WTEPHSKR+KVKLK+QKE
Sbjct: 63 ERYLQPPRCWIKAGLESRELLTFCIKRLKNLNRVRLVDAGFVWTEPHSKRLKVKLKIQKE 122
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
V++GAILEQSY VE+V QDHMC++CSR ANPDQWVAAVQLRQ V H+RTFF+LEQLILK
Sbjct: 123 VMHGAILEQSYTVEFVVQDHMCEACSRAAANPDQWVAAVQLRQKVDHKRTFFFLEQLILK 182
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
H AAA AI I QM +GIDFFF +RSHA+KFV+FV V PV+SR+DKQLVSHD K+N++NY
Sbjct: 183 HAAAALAINIKQMHEGIDFFFSSRSHALKFVDFVSSVVPVKSRNDKQLVSHDTKNNSYNY 242
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ 300
K+TFSVEI P+C++DL+CLP KVA LGN+GPLV+C +V+N++ LLD TLR F+DA Q
Sbjct: 243 KFTFSVEICPVCKDDLVCLPQKVAAGLGNIGPLVLCTRVSNTLMLLDTQTLRSAFVDASQ 302
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR 360
YWR +++L++SRQLVEY+VLD+E + S KYVLA AQV R SDFGKNDT+F++R
Sbjct: 303 YWRVPYRALISSRQLVEYVVLDIE-IDSPAESSSQKYVLAHAQVVRSSDFGKNDTMFNVR 361
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
THLGHLL PGDYALGYDLY AN ND+EL+KY+GLVLPE +L+KKSYEEKR ++R K R W
Sbjct: 362 THLGHLLRPGDYALGYDLYGANTNDLELEKYRGLVLPEVVLVKKSYEEKRQKRRGKARPW 421
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK-DYQPSEMASVT 479
KLKSL+M+VD+S G ++ K EYE F+ +LEE+PE+R I+L++N S +A
Sbjct: 422 KLKSLEMDVDESTGGKEESKRAVEYERFMEELEEDPEMRSKIALFKNPVAVAASSIAGED 481
Query: 480 DGEDVPSVPLDELLADLDL 498
+ ++P VPL+ELL DL L
Sbjct: 482 EDGELPQVPLEELLGDLTL 500
>gi|168031334|ref|XP_001768176.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680614|gb|EDQ67049.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 516
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/512 (65%), Positives = 415/512 (81%), Gaps = 10/512 (1%)
Query: 7 MFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66
MFTV TVG VLCC CG+ MAPNAANMCV CLRS+VDITEGLQK V + +CPEC YLQP
Sbjct: 1 MFTVSHTVGRVLCCMCGVTMAPNAANMCVTCLRSQVDITEGLQKLVTVLYCPECGRYLQP 60
Query: 67 PRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAI 126
PRTW+KA+LESKELLTFC+KRLKN+N+VRLV+A FIWTEPHSKR+KV+LK+QKEV+NGAI
Sbjct: 61 PRTWVKAELESKELLTFCIKRLKNINKVRLVDAGFIWTEPHSKRLKVRLKIQKEVINGAI 120
Query: 127 LEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAAR 186
LEQ+YVVEY +DHMC+ CSRV ANPDQW+A VQ+RQ V H+RTFF+LEQLI+KH AAA
Sbjct: 121 LEQAYVVEYTVEDHMCEKCSRVAANPDQWIACVQVRQKVEHKRTFFFLEQLIIKHGAAAA 180
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
A+ I Q+ G+DF+F N+SH +K ++F+ V PVRSRHDKQLVSHD KSN +NY++T SV
Sbjct: 181 AVNIKQIHDGMDFYFANKSHGLKLLDFLSNVVPVRSRHDKQLVSHDTKSNTYNYRFTMSV 240
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR--- 303
EI P+C++DLICLP KVA LGN+GPLV+C +V+NS+ LLDP TLR ++DA+QYWR
Sbjct: 241 EICPVCKDDLICLPQKVAAGLGNIGPLVLCAQVSNSLLLLDPQTLRTAYMDANQYWRTGF 300
Query: 304 -SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTH 362
S F+SLL +RQLVEY+VLD+E S + SKYVLAD QVAR SDFGKND F RTH
Sbjct: 301 TSGFRSLLNARQLVEYVVLDIETDPS-ASSRASKYVLADVQVARKSDFGKNDITFMARTH 359
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLN GD+ALGYD+Y+AN ND EL+KY+ L LP+ +L+KKSYEEKR ++R KPR WKL
Sbjct: 360 LGHLLNVGDFALGYDVYAANTNDPELEKYRNLSLPDVVLVKKSYEEKRAKRRGKPRPWKL 419
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQP-SEMASVT-- 479
K+LDME+D S R DQ+K KEYE FL ++EE+PE+R I+LYR+ +Y+P SE AS+
Sbjct: 420 KALDMEIDPSALRQDQDKAAKEYERFLEEIEEDPEMRAKIALYRDANYRPQSETASMIDG 479
Query: 480 DGEDVPSVPLDELLADL--DLKSDDGEGDDSM 509
DG++ P+VPL+ELLADL D + D+ E D +
Sbjct: 480 DGDEPPTVPLEELLADLRIDHERDESEAADDV 511
>gi|225441876|ref|XP_002278623.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera]
Length = 489
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/498 (68%), Positives = 397/498 (79%), Gaps = 25/498 (5%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
M ++AGMF V T+GSVLCCKCGIPM PNAANMCV CLR+EVDITEGLQKH + HCPEC
Sbjct: 1 MTEEAGMFRVHHTIGSVLCCKCGIPMTPNAANMCVKCLRTEVDITEGLQKHATLVHCPEC 60
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
D Y +PP+TWI+ QLESKELLT C+K LKNLN+VRL++AEFIWTEPHSKRIKVKL+VQKE
Sbjct: 61 DRYFRPPKTWIEPQLESKELLTLCLKTLKNLNQVRLIHAEFIWTEPHSKRIKVKLRVQKE 120
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
VLNGAILEQ+Y+VEYVQQ+HMC+SCSRVQANPDQWVA+VQ+RQHV HRRT FYLEQLIL
Sbjct: 121 VLNGAILEQAYIVEYVQQEHMCESCSRVQANPDQWVASVQVRQHVPHRRTLFYLEQLILM 180
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRS-RHDKQLVSHDPKSNNFN 239
HDAA A +I M+QGIDFFF N SH KFVEF+GK+ P++S R +QLVSHDPKSNN+
Sbjct: 181 HDAARCAKKIKPMNQGIDFFFANWSHGKKFVEFIGKMVPIKSHRPSQQLVSHDPKSNNYY 240
Query: 240 YKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
YKYT SVEI PICREDLICLP +VA LGN LVIC KVTN I LDP+TL+H LDA+
Sbjct: 241 YKYTLSVEICPICREDLICLPREVASGLGNPHSLVICTKVTNRITFLDPYTLKHHCLDAE 300
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
QYWRS FK+LL+SRQLVEYIVLDV +V SEV+VGGSKY LADAQVAR+SDFGKNDTIF+I
Sbjct: 301 QYWRSPFKALLSSRQLVEYIVLDVGIVYSEVHVGGSKYALADAQVARLSDFGKNDTIFNI 360
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
THLGHLLNPGD+ALGYD+++ N+NDMEL+KY+ LP ILI+K+YEE K KP
Sbjct: 361 TTHLGHLLNPGDHALGYDMFATNSNDMELEKYRDFDLPPAILIRKTYEENCQGKGGKPPP 420
Query: 420 WKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT 479
M++EYEEFLR LE+NPEL NISL+ NK+Y P SV
Sbjct: 421 L--------------------MSREYEEFLRRLEDNPELTLNISLHENKEYPP---PSVR 457
Query: 480 DG-EDVPSVPLDELLADL 496
DG ED L++LLA++
Sbjct: 458 DGEEDSACGALEKLLANV 475
>gi|227204315|dbj|BAH57009.1| AT2G03820 [Arabidopsis thaliana]
Length = 392
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 279/387 (72%), Positives = 325/387 (83%), Gaps = 3/387 (0%)
Query: 4 DAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
++GMF V QT+GSVLCCKCG+PMAPNAANMCV CLRSEVDITEGLQK + I +CPEC CY
Sbjct: 6 ESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTCY 65
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
LQPP+TWIK Q ESKELLTFC+KRLKNLN+V+L NAEF+WTEPHSKRIKVKL VQ EVLN
Sbjct: 66 LQPPKTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLN 125
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
GA+LEQSY VEY +D++C+SCSR QANPDQWVA++QLRQHV+HRRTFFYLEQLIL+HDA
Sbjct: 126 GAVLEQSYPVEYTVRDNLCESCSRFQANPDQWVASIQLRQHVSHRRTFFYLEQLILRHDA 185
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
A+RAIRI Q+DQGIDFFFGN+SHA FVEF+ KV P+ R D+QLVSHD KS+ +NYKYT
Sbjct: 186 ASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKYT 245
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
+SV+I P+CREDL+CLP KVA LGNLGPLV+C KV+++I LLDP TLR FLDA QYWR
Sbjct: 246 YSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLDARQYWR 305
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
S F+S LTSRQLV+Y V DVE E VGG KY L+ Q+AR SD GK +F ++THL
Sbjct: 306 SGFRSALTSRQLVKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGK---MFYVQTHL 362
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDK 390
GH+L PGD ALGYD+Y AN ND E+ K
Sbjct: 363 GHILKPGDQALGYDIYGANVNDNEMKK 389
>gi|357147524|ref|XP_003574377.1| PREDICTED: 60S ribosomal export protein NMD3-like [Brachypodium
distachyon]
Length = 523
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 295/502 (58%), Positives = 383/502 (76%), Gaps = 12/502 (2%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A +GMF QT G+VLCC CG+ M PN ANMC CLR+ VDITEG+ +H + +CP+C
Sbjct: 10 AAGSGMFVPTQTAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRHAAVVYCPDCT 69
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKN-LNRVR--LVNAEFIWTEPHSKRIKVKLKVQ 118
YLQPPR+W++A ES ELL ++RLK+ L R+R L AEF+++EPHSKR+++KL+++
Sbjct: 70 SYLQPPRSWLRAGPESPELLQILLRRLKHPLARLRVSLSGAEFVFSEPHSKRLRLKLRLR 129
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
+EVLNG +LEQ++ VE+ D +CDSC+R QANPDQWVA VQLRQHV HRRTF YLEQL+
Sbjct: 130 REVLNGIVLEQTHPVEFTVHDRLCDSCARAQANPDQWVAVVQLRQHVPHRRTFLYLEQLL 189
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
+KH AA AIR+ G+DFFFG+RSHA + V+F+G VAP+++ KQLVSHD KS +
Sbjct: 190 IKHGQAALAIRVASAPGGLDFFFGSRSHAARLVDFLGTVAPIQTNTAKQLVSHDTKSFIY 249
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
NYKYTFSVEI PICREDLI L PK + LG LGPLV+C+KVTN+IALLDP TLR L+
Sbjct: 250 NYKYTFSVEICPICREDLIALSPKASRDLGGLGPLVLCIKVTNAIALLDPLTLRVHHLEE 309
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
+Y +FK+ LTS+QLVEY+VLD+E S E+ V GS+Y LA AQVAR+SDFGKNDT+F+
Sbjct: 310 KKYRVYNFKAALTSKQLVEYMVLDIEQESPEITVDGSRYQLAYAQVARMSDFGKNDTVFT 369
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELDK-YKGLVLPETILIKKSYEEKRLRKRSKP 417
+RTHLGHLL+PGD ALGYDLY AN ND ++DK LPE IL+KKSYE KR +
Sbjct: 370 VRTHLGHLLSPGDLALGYDLYGANMNDDDMDKALLRQTLPEVILVKKSYE-----KRPRT 424
Query: 418 RSWKLKSLDMEVD-DSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
R WKLK L +E D +K + +++K EY +F+ +LE +PE+RFN++LY+++DY+ SEMA
Sbjct: 425 RRWKLKRLPIEEDLGNKAKGEEDKRADEYSKFILELERDPEMRFNVNLYKDEDYR-SEMA 483
Query: 477 SVTDGEDVPSVPLDELLADLDL 498
S T G+DVP+VP++EL+ DL L
Sbjct: 484 S-TIGDDVPTVPIEELIEDLSL 504
>gi|242034991|ref|XP_002464890.1| hypothetical protein SORBIDRAFT_01g028310 [Sorghum bicolor]
gi|241918744|gb|EER91888.1| hypothetical protein SORBIDRAFT_01g028310 [Sorghum bicolor]
Length = 525
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 294/497 (59%), Positives = 379/497 (76%), Gaps = 12/497 (2%)
Query: 7 MFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66
MF T G+VLCC CG+ M PN ANMC CLRS VDITEG+ +H + +CP+C YLQP
Sbjct: 14 MFVPAATAGTVLCCMCGVSMQPNPANMCARCLRSRVDITEGVPRHAAVVYCPDCSSYLQP 73
Query: 67 PRTWIKAQLESKELLTFCVKRL-KNLNRVR--LVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
PR+W++A ES EL+ ++R+ + L R+R L AEF+++EPHSKR+++KL++++EVL+
Sbjct: 74 PRSWLRATPESPELMQILLRRINRPLARLRVSLSGAEFVFSEPHSKRLRLKLRLRREVLH 133
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
G +LEQ++ VE+V D +CDSCSR QANPDQWVA VQLRQHV HRRTF YLEQL+LKH
Sbjct: 134 GIVLEQTHPVEFVVHDRLCDSCSRAQANPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQ 193
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
A+ AIR+ G+DFFFG+RSHA + V+F+ VAP+++ KQLVSHD KS+ +NYKYT
Sbjct: 194 ASLAIRVAAAPGGLDFFFGSRSHAARLVDFLATVAPIQTSTAKQLVSHDTKSSVYNYKYT 253
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
FSVEI PICREDLI L P+ + +G LGPLV+C+KVTN+IALLDP TLR L+ +Y
Sbjct: 254 FSVEICPICREDLIALSPQASRDMGGLGPLVLCVKVTNAIALLDPLTLRVHHLEEKKYRV 313
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
+FK+ LTS+QLVEYIVLD+E S E+++ GS+Y LA AQVARVSDFGKNDTIF++RTHL
Sbjct: 314 YNFKAALTSKQLVEYIVLDIEQESPEISIDGSRYQLAYAQVARVSDFGKNDTIFTVRTHL 373
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKG-LVLPETILIKKSYEEKRLRKRSKPRSWKL 422
GHLLNPGD+ALGYDLY AN ND ++D LPE +L+KKSYE KR + R WKL
Sbjct: 374 GHLLNPGDHALGYDLYGANLNDDDMDTAMARYSLPEVVLVKKSYE-----KRPRTRRWKL 428
Query: 423 KSLDMEVDDS-KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDG 481
K L +E D + K + ++E+ EYE FLRDLE +PE+RF + LY+N+DY+ SEMAS T G
Sbjct: 429 KRLPVEEDAANKAKGEEERRLDEYEAFLRDLELDPEMRFKMDLYKNEDYR-SEMAS-TVG 486
Query: 482 EDVPSVPLDELLADLDL 498
+D+P+VP+DELL DL L
Sbjct: 487 DDIPTVPIDELLEDLTL 503
>gi|194695634|gb|ACF81901.1| unknown [Zea mays]
gi|414867863|tpg|DAA46420.1| TPA: nonsense-mediated mRNA decay protein 3 isoform 1 [Zea mays]
gi|414867864|tpg|DAA46421.1| TPA: nonsense-mediated mRNA decay protein 3 isoform 2 [Zea mays]
Length = 525
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 293/514 (57%), Positives = 390/514 (75%), Gaps = 13/514 (2%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A GMF T G+VLCC CG+ M PN ANMC CLR+ VDITEG+ +H + +CP+C
Sbjct: 9 AGGTGMFVPAATAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRHAAVVYCPDCS 68
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRL-KNLNRVR--LVNAEFIWTEPHSKRIKVKLKVQ 118
YLQPPR+W++A ES EL+ ++R+ + L R+R L AEF+++EPHSKR+++ L+++
Sbjct: 69 SYLQPPRSWLRATPESPELMQILLRRVNRPLARLRVSLSGAEFVFSEPHSKRLRLNLRLR 128
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
+EVL+G +LEQ++ VE+V D +CDSCSR QANPDQWVA VQLRQHV HRRTF YLEQL+
Sbjct: 129 REVLHGIVLEQTHPVEFVVHDRLCDSCSRAQANPDQWVAVVQLRQHVPHRRTFLYLEQLL 188
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
LKH A+ AIR+ G+DFFFG+RSHA + V+F+ VAP++++ KQLVSHD KS+ +
Sbjct: 189 LKHGQASLAIRVAAAPGGLDFFFGSRSHAARLVDFLATVAPIQTQTAKQLVSHDTKSSVY 248
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
NYKYTFSV+I PICREDLI L P+ + +G LGPLV+C+KVTN+IALLDP TLR L+
Sbjct: 249 NYKYTFSVDICPICREDLIALSPQASRDMGGLGPLVLCVKVTNAIALLDPLTLRVHHLEE 308
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
+Y +FK+ LTS+QLVEYIVLD+E S E+++ GS+Y LA AQVARVSDFGKNDTIF+
Sbjct: 309 KKYRVYNFKATLTSKQLVEYIVLDIEQESPEISIDGSRYQLAYAQVARVSDFGKNDTIFT 368
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELD-KYKGLVLPETILIKKSYEEKRLRKRSKP 417
+RTHLGHLLNPGD+ALGYDLY AN ND +++ LPE +L+KKSYE KR +
Sbjct: 369 VRTHLGHLLNPGDHALGYDLYGANLNDDDMNTAMTRYSLPEAVLVKKSYE-----KRPRT 423
Query: 418 RSWKLKSLDMEVDDS-KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
R WKLK L +E D + K + ++EK EYE FLRDLE +P +RF ++LY+N+DY+ SEMA
Sbjct: 424 RRWKLKRLPVEEDAANKAKGEEEKTLDEYEAFLRDLELDPGMRFGVNLYKNEDYR-SEMA 482
Query: 477 SVTDGEDVPSVPLDELLADLDLK-SDDGEGDDSM 509
S T G+D+P+VP++EL+ DL L ++D EG++++
Sbjct: 483 S-TVGDDIPTVPIEELIEDLTLGDNEDDEGEEAV 515
>gi|212724002|ref|NP_001132875.1| uncharacterized protein LOC100194368 [Zea mays]
gi|195612302|gb|ACG27981.1| nonsense-mediated mRNA decay protein 3 [Zea mays]
Length = 525
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/514 (56%), Positives = 389/514 (75%), Gaps = 13/514 (2%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A GMF T G+VLCC CG+ M PN ANMC CLR+ VDITEG+ +H + +CP+C
Sbjct: 9 AGGTGMFVPAATAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRHAAVVYCPDCS 68
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRL-KNLNRVR--LVNAEFIWTEPHSKRIKVKLKVQ 118
YLQPPR+W++A ES EL+ ++R+ + L R+R L AEF+++EPHSKR+++ L+++
Sbjct: 69 SYLQPPRSWLRATPESPELMQILLRRVNRPLARLRVSLSGAEFVFSEPHSKRLRLNLRLR 128
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
+EVL+G +LEQ++ VE+V D +CDSCSR QANPDQWVA VQLRQHV HRRTF YLEQL+
Sbjct: 129 REVLHGIVLEQTHPVEFVVHDRLCDSCSRAQANPDQWVAVVQLRQHVPHRRTFLYLEQLL 188
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
LKH A+ AIR+ G+DFFFG+RSHA + V+F+ VAP++++ KQLVSHD KS+ +
Sbjct: 189 LKHGQASLAIRVAAAPGGLDFFFGSRSHAARLVDFLATVAPIQTQTAKQLVSHDTKSSVY 248
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
NYKYTFSV+I PICREDLI L P+ + +G LGPLV+C+KVTN+IALLDP TLR L+
Sbjct: 249 NYKYTFSVDICPICREDLIALSPQASRDMGGLGPLVLCVKVTNAIALLDPLTLRVHHLEE 308
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
+Y +FK+ LTS+QLVEYIVLD+E S E+++ GS+Y LA AQVARVSDFGKNDTIF+
Sbjct: 309 KKYRVYNFKATLTSKQLVEYIVLDIEQESPEISIDGSRYQLAYAQVARVSDFGKNDTIFT 368
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELD-KYKGLVLPETILIKKSYEEKRLRKRSKP 417
+RTHLGHLLNPGD+ALGYDLY AN ND +++ LPE +L+KKSYE KR +
Sbjct: 369 VRTHLGHLLNPGDHALGYDLYGANLNDDDMNTAMTRYSLPEAVLVKKSYE-----KRPRT 423
Query: 418 RSWKLKSLDMEVDDS-KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
R WKLK L +E D + K + ++EK EYE FLRDLE +P +RF ++LY+N+DY+ SEMA
Sbjct: 424 RRWKLKRLPVEEDAANKAKGEEEKTLDEYEAFLRDLELDPGMRFGVNLYKNEDYR-SEMA 482
Query: 477 SVTDGEDVPSVPLDELLADLDLK-SDDGEGDDSM 509
S T G+D+P+V ++EL+ DL L ++D EG++++
Sbjct: 483 S-TVGDDIPTVSIEELIEDLTLGDNEDDEGEEAV 515
>gi|125533047|gb|EAY79612.1| hypothetical protein OsI_34753 [Oryza sativa Indica Group]
Length = 523
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/502 (58%), Positives = 379/502 (75%), Gaps = 12/502 (2%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A +GMF QTVG+VLCC CG+ M PN ANMC C+R+ VDITEG+ +H + +CP+C
Sbjct: 9 AAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCT 68
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRL-KNLNRVR--LVNAEFIWTEPHSKRIKVKLKVQ 118
YLQPPR+W++A ES EL+ ++RL + L R+R L AEF+++EPHSKR+++KL+++
Sbjct: 69 SYLQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLR 128
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
+EV N +LEQ++ VE+ D +CD+C+R Q+NPDQWVA VQLRQHV HRRTF YLEQL+
Sbjct: 129 REVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLL 188
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
LKH A+ A+R+ G+DFFFG+RSHA + V+F+ VAPV+++ KQLVSHD KSN +
Sbjct: 189 LKHGQASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVY 248
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
NYK+TFSVEI PICREDLI L P+V+ LG LGP+V+C+KVTN+IALLDP TLR L+
Sbjct: 249 NYKHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEE 308
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
+Y +FK+ LTS+QLVEYIVLD+E S E+ + GS+Y LA AQVARVSDFGKNDT+F+
Sbjct: 309 KKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFT 368
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELD-KYKGLVLPETILIKKSYEEKRLRKRSKP 417
+RTHLGHLLNPGD ALGYDLY AN ND ++D LPE IL+KKS+ KR +
Sbjct: 369 VRTHLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFA-----KRPRT 423
Query: 418 RSWKLKSLDMEVDD-SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
R WKLK L ME D +K + + EK EYEEFLRDLE N ++RF I LY+++DY+ SEMA
Sbjct: 424 RRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYR-SEMA 482
Query: 477 SVTDGEDVPSVPLDELLADLDL 498
S T G+DVP+VP++EL+ DL L
Sbjct: 483 S-TIGDDVPTVPIEELIEDLSL 503
>gi|115483606|ref|NP_001065473.1| Os10g0573900 [Oryza sativa Japonica Group]
gi|78709040|gb|ABB48015.1| NMD3 family protein, expressed [Oryza sativa Japonica Group]
gi|113640005|dbj|BAF27310.1| Os10g0573900 [Oryza sativa Japonica Group]
gi|215765823|dbj|BAG87520.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 523
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/502 (58%), Positives = 379/502 (75%), Gaps = 12/502 (2%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A +GMF QTVG+VLCC CG+ M PN ANMC C+R+ VDITEG+ +H + +CP+C
Sbjct: 9 AAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCT 68
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRL-KNLNRVR--LVNAEFIWTEPHSKRIKVKLKVQ 118
YLQPPR+W++A ES EL+ ++RL + L R+R L AEF+++EPHSKR+++KL+++
Sbjct: 69 SYLQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLR 128
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
+EV N +LEQ++ VE+ D +CD+C+R Q+NPDQWVA VQLRQHV HRRTF YLEQL+
Sbjct: 129 REVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLL 188
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
LKH A+ A+R+ G+DFFFG+RSHA + V+F+ VAPV+++ KQLVSHD KSN +
Sbjct: 189 LKHGQASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVY 248
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
NYK+TFSVEI PICREDLI L P+V+ LG LGP+V+C+KVTN+IALLDP TLR L+
Sbjct: 249 NYKHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEE 308
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
+Y +FK+ LTS+QLVEYIVLD+E S E+ + GS+Y LA AQVARVSDFGKNDT+F+
Sbjct: 309 KKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFT 368
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELD-KYKGLVLPETILIKKSYEEKRLRKRSKP 417
+RTHLGHLLNPGD ALGYDLY AN ND ++D LPE IL+KKS+ KR +
Sbjct: 369 VRTHLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFA-----KRPRT 423
Query: 418 RSWKLKSLDMEVDD-SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
R WKLK L ME D +K + + EK EYEEFLRDLE N ++RF I LY+++DY+ SEMA
Sbjct: 424 RRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYR-SEMA 482
Query: 477 SVTDGEDVPSVPLDELLADLDL 498
S T G+DVP+VP++EL+ DL L
Sbjct: 483 S-TIGDDVPTVPIEELIEDLSL 503
>gi|413955127|gb|AFW87776.1| hypothetical protein ZEAMMB73_353235 [Zea mays]
Length = 525
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/514 (56%), Positives = 385/514 (74%), Gaps = 13/514 (2%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A GMF T G+VLCC CG+ M PN ANMC CLR+ VDITEG+ +H + +CP+C
Sbjct: 9 AGGTGMFVPAATAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRHAAVVYCPDCS 68
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRL-KNLNRVR--LVNAEFIWTEPHSKRIKVKLKVQ 118
YLQPPR+W++A ES EL+ ++R+ + L R+R L AEF+++EPHSKR+++KL+++
Sbjct: 69 SYLQPPRSWLRAAPESPELMQILLRRINRPLARLRVSLSGAEFVFSEPHSKRLRLKLRLR 128
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
+EVL+G +LEQ++ VE+V D +CDSCSR QANPDQWVA VQLRQHV HRRTF YLEQL+
Sbjct: 129 REVLHGIVLEQTHPVEFVVHDRLCDSCSRAQANPDQWVAVVQLRQHVPHRRTFLYLEQLL 188
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
LKH A+ AIR+ +G+DFFFG+RSHA + V+FV VAP++++ KQLVSHD KS+ +
Sbjct: 189 LKHGQASLAIRVAAAPEGLDFFFGSRSHAARLVDFVATVAPIQTQTAKQLVSHDTKSSVY 248
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
NYKYTFSVEI PICREDLI L P+ + +G LGPLV+C+KVTN+IALLDP TLR L+
Sbjct: 249 NYKYTFSVEICPICREDLIALSPQASRDMGGLGPLVLCVKVTNAIALLDPLTLRVHHLEE 308
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
+Y +FK+ LTS+QLVEYIVLD+E S E+ + GS+Y LA AQVAR+SDFGKND IF+
Sbjct: 309 KKYRVYNFKAALTSKQLVEYIVLDIEPESPEICIDGSRYQLAYAQVARMSDFGKNDAIFT 368
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELD-KYKGLVLPETILIKKSYEEKRLRKRSKP 417
+RTHLGHLLNPGD+ALGYDLY AN ND ++D LPE +L+KKSYE KR +
Sbjct: 369 VRTHLGHLLNPGDHALGYDLYGANLNDDDMDMAMTRYSLPEVVLVKKSYE-----KRPRT 423
Query: 418 RSWKLKSLDMEVDDS-KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
R WKLK L +E D + K + ++EK EYE FLRDLE + + ++LY+N+DY+ SEMA
Sbjct: 424 RRWKLKRLPVEEDAANKAKGEEEKRLDEYEAFLRDLEVDSGMWSKMNLYKNEDYR-SEMA 482
Query: 477 SVTDGEDVPSVPLDELLADLDLKSD-DGEGDDSM 509
S T G+D+P+VP++EL+ DL L D + EG +++
Sbjct: 483 S-TVGDDIPTVPIEELIEDLTLGDDEEDEGKETV 515
>gi|12643043|gb|AAK00432.1|AC060755_2 hypothetical protein [Oryza sativa Japonica Group]
Length = 711
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 287/491 (58%), Positives = 373/491 (75%), Gaps = 12/491 (2%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
TVG+VLCC CG+ M PN ANMC C+R+ VDITEG+ +H + +CP+C YLQPPR+W++
Sbjct: 208 TVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSWLR 267
Query: 73 AQLESKELLTFCVKRL-KNLNRVR--LVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
A ES EL+ ++RL + L R+R L AEF+++EPHSKR+++KL++++EV N +LEQ
Sbjct: 268 AGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFNAVVLEQ 327
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
++ VE+ D +CD+C+R Q+NPDQWVA VQLRQHV HRRTF YLEQL+LKH A+ A+R
Sbjct: 328 THPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQASLALR 387
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
+ G+DFFFG+RSHA + V+F+ VAPV+++ KQLVSHD KSN +NYK+TFSVEI
Sbjct: 388 VAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHTFSVEIC 447
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PICREDLI L P+V+ LG LGP+V+C+KVTN+IALLDP TLR L+ +Y +FK+
Sbjct: 448 PICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAA 507
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
LTS+QLVEYIVLD+E S E+ + GS+Y LA AQVARVSDFGKNDT+F++RTHLGHLLNP
Sbjct: 508 LTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHLGHLLNP 567
Query: 370 GDYALGYDLYSANNNDMELD-KYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
GD ALGYDLY AN ND ++D LPE IL+KKS+ KR + R WKLK L ME
Sbjct: 568 GDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFA-----KRPRTRRWKLKRLPME 622
Query: 429 VDD-SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSV 487
D +K + + EK EYEEFLRDLE N ++RF I LY+++DY+ SEMAS T G+DVP+V
Sbjct: 623 EDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYR-SEMAS-TIGDDVPTV 680
Query: 488 PLDELLADLDL 498
P++EL+ DL L
Sbjct: 681 PIEELIEDLSL 691
>gi|326526265|dbj|BAJ97149.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 521
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 294/504 (58%), Positives = 382/504 (75%), Gaps = 16/504 (3%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A +GMF QT G+VLCC CG+ M PN ANMC CLR+ VDITEG+ ++ + +CP+C
Sbjct: 9 AAGSGMFVPTQTAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRNAAVVYCPDCF 68
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKN-LNRVR--LVNAEFIWTEPHSKRIKVKLKVQ 118
YLQPPR+W++A ES ELL ++RLK+ L R+R L AEF+++EPHSKR+++KL ++
Sbjct: 69 SYLQPPRSWLRAGPESPELLQILLRRLKHPLARLRVSLSGAEFVFSEPHSKRLRLKLHLR 128
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
+EVLNG +LEQ++ VE+V D +CDSC+R QANPDQWVA VQLRQHV HRRTF YLEQL+
Sbjct: 129 REVLNGIVLEQTHPVEFVVHDRLCDSCARAQANPDQWVAVVQLRQHVPHRRTFLYLEQLL 188
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
+KH AA AIR+ G+DFFFG+RSHA + V+F+G VAP+++ KQLVSHD KS +
Sbjct: 189 IKHGQAALAIRVASAPGGLDFFFGSRSHAARLVDFLGTVAPIQTNTAKQLVSHDTKSFIY 248
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
NYKYTFSVEI PICREDLI L PK + LG LGPLV+C KVTN+IALLDP TLR L+
Sbjct: 249 NYKYTFSVEICPICREDLIALSPKASRDLGGLGPLVLCTKVTNAIALLDPLTLRVHHLEE 308
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
+Y +FK+ LTS+QLV+Y+VLD+E S E+ + GS+Y LA AQVAR+SDFGKNDT+F+
Sbjct: 309 KKYRVYNFKAALTSKQLVQYMVLDIEPESPEITIDGSRYQLAYAQVARMSDFGKNDTVFT 368
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLV---LPETILIKKSYEEKRLRKRS 415
+RTHLGH LNPGD ALGYDLY AN ND ++D K L+ LPE IL+KKSYE KR
Sbjct: 369 VRTHLGHRLNPGDLALGYDLYGANMNDDDMD--KALLRQNLPEVILVKKSYE-----KRR 421
Query: 416 KPRSWKLKSLDMEVD-DSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE 474
+ R WKLK L +E D +K + ++++ EY++FL DLE +P+LR I+LY+N+DY+ SE
Sbjct: 422 RTRRWKLKRLPVEEDLGNKAKGEEDRREDEYKKFLDDLELDPDLRLAINLYKNEDYR-SE 480
Query: 475 MASVTDGEDVPSVPLDELLADLDL 498
MAS T G+D+P+VP++EL+ DL L
Sbjct: 481 MAS-TVGDDLPTVPIEELIEDLTL 503
>gi|326491705|dbj|BAJ94330.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326507208|dbj|BAJ95681.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532436|dbj|BAK05147.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 521
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 294/504 (58%), Positives = 383/504 (75%), Gaps = 16/504 (3%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A +GMF QT G+VLCC CG+ M PN ANMC CLR+ VDITEG+ ++ + +CP+C
Sbjct: 9 AAGSGMFVPTQTAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRNAAVVYCPDCF 68
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKN-LNRVR--LVNAEFIWTEPHSKRIKVKLKVQ 118
YLQPPR+W++A ES ELL ++RLK+ L R+R L AEF+++EPHSKR+++KL+++
Sbjct: 69 SYLQPPRSWLRAGPESPELLQILLRRLKHPLARLRVSLSGAEFVFSEPHSKRLRLKLRLR 128
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
+EVLNG +LEQ++ VE+V D +CDSC+R QANPDQWVA VQLRQHV HRRTF YLEQL+
Sbjct: 129 REVLNGIVLEQTHPVEFVVHDRLCDSCARAQANPDQWVAVVQLRQHVPHRRTFLYLEQLL 188
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
+KH AA AIR+ G+DFFFG+RSHA + V+F+G VAP+++ KQLVSHD KS +
Sbjct: 189 IKHGQAALAIRVASAPGGLDFFFGSRSHAARLVDFLGTVAPIQTNTAKQLVSHDTKSFIY 248
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
NYKYTFSVEI PICREDLI L PK + LG LGPLV+C KVTN+IALLDP TLR L+
Sbjct: 249 NYKYTFSVEICPICREDLIALSPKASRDLGGLGPLVLCTKVTNAIALLDPLTLRVHHLEE 308
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
+Y +FK+ LTS+QLV+Y+VLD+E S E+ + GS+Y LA AQVAR+SDFGKNDT+F+
Sbjct: 309 KKYRVYNFKAALTSKQLVQYMVLDIEPESPEITIDGSRYQLAYAQVARMSDFGKNDTVFT 368
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLV---LPETILIKKSYEEKRLRKRS 415
+RTHLGH LNPGD ALGYDLY AN ND ++D K L+ LPE IL+KKSYE KR
Sbjct: 369 VRTHLGHRLNPGDLALGYDLYGANMNDDDMD--KALLRQNLPEVILVKKSYE-----KRR 421
Query: 416 KPRSWKLKSLDMEVD-DSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE 474
+ R WKLK L +E D +K + ++++ EY++FL DLE +P+LR I+LY+N+DY+ SE
Sbjct: 422 RTRRWKLKRLPVEEDLGNKAKGEEDRREDEYKKFLDDLELDPDLRLAINLYKNEDYR-SE 480
Query: 475 MASVTDGEDVPSVPLDELLADLDL 498
MAS T G+D+P+VP++EL+ DL L
Sbjct: 481 MAS-TVGDDLPTVPIEELIEDLTL 503
>gi|307109780|gb|EFN58017.1| hypothetical protein CHLNCDRAFT_142211 [Chlorella variabilis]
Length = 563
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/522 (51%), Positives = 370/522 (70%), Gaps = 32/522 (6%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A AG F QT G VLCC CG + PN NMCV C+R++VDITEG+QK V + C C
Sbjct: 9 APQAGTFMPHQTQGHVLCCLCGTSITPNPTNMCVNCIRTQVDITEGIQKQVTVLWCKSCG 68
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
YLQPP+ W+KA LESKELLT+C+KR++ L++V+LV+A F+WTEPHS R+KVKL +Q EV
Sbjct: 69 RYLQPPKHWLKADLESKELLTYCIKRVRGLSKVKLVDAAFVWTEPHSMRLKVKLTIQGEV 128
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
LNGAIL+QS+VVEYV + +MC +C+R ANP+ WVA VQ+RQHV+H+RTFF+LEQLILKH
Sbjct: 129 LNGAILQQSFVVEYVVERYMCPTCNRQNANPNAWVACVQVRQHVSHKRTFFFLEQLILKH 188
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
A + + +M +G+DF+F NR+HA+KF++F+ P+R RHDKQLVSHD ++N+NYK
Sbjct: 189 SADESCVNVKEMHEGVDFYFANRAHAIKFIDFLQTAVPIRYRHDKQLVSHDVHTSNYNYK 248
Query: 242 YTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQY 301
YTFSVE++P+C++DL+CLP K+A SLGN+GP+V+ +VTN+I L DP +LR L+A Y
Sbjct: 249 YTFSVEVAPLCKDDLVCLPAKLAASLGNIGPVVVVTRVTNAITLTDPLSLRQAVLEAGAY 308
Query: 302 WRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVG-GSKYVLADAQVARVSDFGKNDTIFSIR 360
WR+ K ++ SRQL E+ +LD EVV+ G K+ LA +VAR +DFG ND F R
Sbjct: 309 WRNPLKPMMGSRQLTEFYILDSEVVAPTGGYGHNPKWALASCEVARAADFGSNDQTFFAR 368
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDK--YKGLVLPETILIKKSYEEKRLRKRS--- 415
THLGHLL+ GD A+GYD+ +AN D EL+K +KGL LP+ +L++KSYEE+R R+R+
Sbjct: 369 THLGHLLHAGDSAVGYDVANANLVDPELEKAVHKGLTLPDVVLVRKSYEERRRRRRARGD 428
Query: 416 KPRSWKLKSLDMEVD---------------DSKGRTDQEKMNKEYEEFLRDLEENPELRF 460
+ R+W+LK L ++V +G + E+ + E F+++LEE+P++R
Sbjct: 429 QQRAWRLKRLAVDVGEEEAAAQKAAAQQPHHGRGMSSLEQEQADLERFMQELEEDPDMRA 488
Query: 461 NISLYRNKDYQPSEMA---------SVTDGE--DVPSVPLDE 491
++LYR+ +YQ + A S TD E DVP VPL+E
Sbjct: 489 RVALYRDPNYQAASAAAAPRQQAAMSDTDEEDGDVPEVPLEE 530
>gi|384248530|gb|EIE22014.1| NMD3-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 540
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 273/510 (53%), Positives = 366/510 (71%), Gaps = 21/510 (4%)
Query: 5 AGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYL 64
A FT T G VLCC CG+ + PN +NMCV C+RS+VDITEGLQK V I C EC+ YL
Sbjct: 12 ATTFTPQHTQGHVLCCLCGVSIPPNPSNMCVNCIRSQVDITEGLQKQVTILWCKECERYL 71
Query: 65 QPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNG 124
QPP+ W++A +ESKELLTFC+KRLK L +V+LV+A FIWTEPHS+R+KVKL +Q EV+NG
Sbjct: 72 QPPKHWVRAAIESKELLTFCIKRLKGLQKVKLVDAGFIWTEPHSRRLKVKLTIQAEVMNG 131
Query: 125 AILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAA 184
AIL+Q++VVEYV + HMC C+R N + W A Q+RQH H+RTFFYLEQLILK+D
Sbjct: 132 AILQQTFVVEYVVEPHMCMDCTRANTNSNVWTACAQVRQHTGHKRTFFYLEQLILKYDVD 191
Query: 185 ARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTF 244
+ I I M +G+DFFF NR+HA+KF++F P++ RHDKQLVSH+ ++ +NYKYTF
Sbjct: 192 QQCISIKDMHEGVDFFFSNRAHALKFIDFTQNHVPIKYRHDKQLVSHNEHASTYNYKYTF 251
Query: 245 SVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRS 304
SVEI PICR+DL+CLPPK A SLG GPL +C +V+N++ L D TLR +DA+ YWR
Sbjct: 252 SVEIVPICRDDLVCLPPKAAASLGGFGPLALCTRVSNTLTLTDTQTLRSVQIDANTYWRY 311
Query: 305 SFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLG 364
++ ++TSRQLVE++VLDVE + N S+++LAD QVA+ SDFG+ND F +RTHLG
Sbjct: 312 PYRPVVTSRQLVEFVVLDVEPAAPSQN---SRFLLADVQVAKASDFGRNDRTFFVRTHLG 368
Query: 365 HLLNPGDYALGYDLYSANNNDMELDK--YKGLVLPETILIKKSY--EEKRLRKRSKPRSW 420
HLL+ GD ALGYD+ +AN + ELD KGL +P+ IL++KSY + +R + R + R+W
Sbjct: 369 HLLHAGDSALGYDMSTANTVEPELDAAVAKGLQVPDIILVRKSYEEKRRRRKARGEQRAW 428
Query: 421 KLKSLDMEVDDSKGRTDQ-------EKMNKEYEEFLRDLEENPELRFNISLYRNKDYQP- 472
KLK + ME ++ G + + + ++ E F+++LEE+PELR ++LYR+ Y P
Sbjct: 429 KLKRMAMEAEEEPGTSGRGRDARAAPRHEQDLERFMQELEEDPELRAKMALYRDPAYNPV 488
Query: 473 ----SEMASVTDGE--DVPSVPLDELLADL 496
A++TD E DVP VPL+ELL DL
Sbjct: 489 AEAERRAAAMTDDEDGDVPEVPLEELLDDL 518
>gi|357477383|ref|XP_003608977.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355510032|gb|AES91174.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 462
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 285/432 (65%), Positives = 328/432 (75%), Gaps = 60/432 (13%)
Query: 35 VACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK---NL 91
+ CL SEVDITEGL K +I HCPEC YLQPPRTW+K QLE+KELL FC+KRL+ N+
Sbjct: 59 LKCLCSEVDITEGLLKLHVIVHCPECQSYLQPPRTWVKLQLETKELLAFCLKRLQKNMNV 118
Query: 92 NRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQAN 151
N+V+LVNAEFIWTEPHSKR+KVK+ VQKEV NGAIL+QSY+VEYVQQDHMC+SCSRVQ
Sbjct: 119 NKVKLVNAEFIWTEPHSKRVKVKVSVQKEVYNGAILQQSYLVEYVQQDHMCESCSRVQ-- 176
Query: 152 PDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFV 211
HV+HRRTFFYLEQLILKH AAARA+RI QMD GIDF+F RSH F+
Sbjct: 177 ------------HVSHRRTFFYLEQLILKHGAAARAVRIKQMDHGIDFYFSKRSHGNSFL 224
Query: 212 EFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLG 271
EF+GKVAP+RSR+DKQLVSHD KSN++NYKYTFSVEISPICREDLICLPPK ++LGN+G
Sbjct: 225 EFIGKVAPIRSRNDKQLVSHDSKSNDYNYKYTFSVEISPICREDLICLPPKAYIALGNIG 284
Query: 272 PLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVS---- 327
P+VIC KVTNSIALLDP TL++ FLDADQYWR+SFKSLLTS++LVEYIVLD+EVVS
Sbjct: 285 PIVICTKVTNSIALLDPLTLKYSFLDADQYWRASFKSLLTSKELVEYIVLDLEVVSSKIG 344
Query: 328 -SEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDM 386
SE+ +GG+KYVLADAQV PGD+ALGYDLY AN+ND
Sbjct: 345 PSEITMGGTKYVLADAQV------------------------PGDHALGYDLYRANSNDT 380
Query: 387 ELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYE 446
E + YKG + PE ILIKKSY+EKR KPRSW KSL MEVDD G N E +
Sbjct: 381 EYENYKGHI-PEVILIKKSYKEKRC---GKPRSW--KSLPMEVDDKVGV----DYNLERD 430
Query: 447 EFLRDLEENPEL 458
FL+D PEL
Sbjct: 431 LFLKD----PEL 438
>gi|302853859|ref|XP_002958442.1| hypothetical protein VOLCADRAFT_69446 [Volvox carteri f.
nagariensis]
gi|300256247|gb|EFJ40518.1| hypothetical protein VOLCADRAFT_69446 [Volvox carteri f.
nagariensis]
Length = 568
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/478 (51%), Positives = 347/478 (72%), Gaps = 26/478 (5%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC CG + PN +NMCV C+RS+VDITEG+QK V + C EC YLQPP+ W+ A+LES
Sbjct: 1 LCCLCGTSILPNPSNMCVNCIRSQVDITEGIQKQVTVLWCKECGRYLQPPKHWVSAELES 60
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQ 137
KELLTFC+K++K L +V+LV+A F+WTEPHSKR+KVKL +Q EV NGAIL+Q++VV+YV
Sbjct: 61 KELLTFCIKKIKGLQKVKLVDAGFVWTEPHSKRLKVKLTIQAEVFNGAILQQTFVVDYVV 120
Query: 138 QDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGI 197
+++MC C+R ANP+ WVA VQLRQHV H+RTF +LEQLILKHDAAA ++I + +GI
Sbjct: 121 ENNMCPDCNRQNANPNSWVACVQLRQHVFHKRTFLFLEQLILKHDAAANCVKIKDIHEGI 180
Query: 198 DFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLI 257
DFF+ R HA+KF++F+ V P+R R DKQLVSHD +N +NYK+TFSVEI P+C++DL
Sbjct: 181 DFFYSQRGHALKFIDFLQSVVPIRFRADKQLVSHDTHNNTYNYKFTFSVEIVPLCKDDLA 240
Query: 258 CLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVE 317
CLP K+A S GNLGPLV+ ++TN I + DP TLR+ +DA Y+R F +L + R LV
Sbjct: 241 CLPAKMAASCGNLGPLVLVSRITNQITITDPLTLRNYSMDAPVYYRHPFTALASQRALVP 300
Query: 318 YIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYD 377
YIVLD+E + S+Y+L++AQVAR+SDFG+NDT+F RTHLG++L+PGD LGYD
Sbjct: 301 YIVLDIEPLPVPQGNSNSRYLLSEAQVARMSDFGRNDTVFHTRTHLGNILHPGDTVLGYD 360
Query: 378 LYSANNNDMELDKY--KGLVLPETILIKKSYEEKRLRKRSK-----PRSWKLKSLDMEVD 430
+ ++ ++ + Y KG +P+ +L++KSYEEKR ++ +K R WKLK+L+MEVD
Sbjct: 361 MTASQLVGLDYEAYVNKGGRVPDVVLVRKSYEEKRRKRHAKGGAAAARPWKLKTLEMEVD 420
Query: 431 DS----KGRTDQE---------------KMNKEYEEFLRDLEENPELRFNISLYRNKD 469
++ +GR + +++ + E FL +LEE+P++R I++Y++ +
Sbjct: 421 EAAGGPRGRNEAAAVRERERGGERALLLRLDADRERFLVELEEDPDMRARINIYKDAE 478
>gi|255089002|ref|XP_002506423.1| predicted protein [Micromonas sp. RCC299]
gi|226521695|gb|ACO67681.1| predicted protein [Micromonas sp. RCC299]
Length = 540
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/470 (53%), Positives = 342/470 (72%), Gaps = 10/470 (2%)
Query: 7 MFTVPQ--TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYL 64
MF V Q G VLCC CG+ M PN A MCV C+RS+VDIT+G+QK + +C +C YL
Sbjct: 1 MFGVQQHNAPGHVLCCMCGVGMPPNPAGMCVDCIRSQVDITDGIQKQCTVLYCNQCARYL 60
Query: 65 QPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNG 124
QPPR WI+A LESKELLTFC+KR+K L +V+L +A FIWTEPHSKR+K+KL VQKEVLNG
Sbjct: 61 QPPRHWIRADLESKELLTFCIKRVKGLGKVKLTDAGFIWTEPHSKRLKIKLTVQKEVLNG 120
Query: 125 AILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAA 184
AIL+Q++VVE+V + HMCD+CSR AN DQW A VQ+RQ V H+RTF +LEQLILKH
Sbjct: 121 AILQQTFVVEFVVEWHMCDACSRAAANADQWTACVQVRQKVEHKRTFLFLEQLILKHGME 180
Query: 185 ARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTF 244
A I I G+DF++G+RSH +K ++F+ +V PVR+RHDKQLVSHD +N +NY+YTF
Sbjct: 181 ANTIGIKSQPDGLDFYYGSRSHGLKLLDFLQQVVPVRARHDKQLVSHDANNNTYNYQYTF 240
Query: 245 SVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRS 304
VEI P+C+ED++CLP KV++ LG +GP+++ +V S L DP TLR ++ ADQY+RS
Sbjct: 241 MVEIVPVCKEDIVCLPHKVSLGLGGVGPIMLVTRVGASFQLTDPSTLRQIWVAADQYYRS 300
Query: 305 SFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLG 364
+K + +++ + EYIVLD+E G KY+LAD QVAR++DFG ND I +THLG
Sbjct: 301 PYKPIGSAKMMTEYIVLDIEPADMGRQRAG-KYLLADVQVARLADFGVNDVILHAKTHLG 359
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYK-GLVLPETILIKKSYEEKRLRKRSK--PRSWK 421
H LNPGD A GYDL S D EL+KYK G+ LP+ +L+KKSY+EKR R+R K R WK
Sbjct: 360 HHLNPGDTAFGYDLASLQIVDPELEKYKHGVQLPDVLLVKKSYQEKRRRRRQKGVGRGWK 419
Query: 422 LKSLDMEVDD----SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
L+ +D+ ++ +KG ++E+ + E F+++LEE+ ++R + ++R+
Sbjct: 420 LQRMDIAEEEAAGGAKGAREEERRANDEELFMQELEEDEDVRAQVQIFRD 469
>gi|125575780|gb|EAZ17064.1| hypothetical protein OsJ_32560 [Oryza sativa Japonica Group]
Length = 501
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 266/502 (52%), Positives = 353/502 (70%), Gaps = 34/502 (6%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A +GMF QTVG+VLCC CG+ M PN ANMC C+R+ VDITEG+ +H + +CP+C
Sbjct: 9 AAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCT 68
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRL-KNLNRVR--LVNAEFIWTEPHSKRIKVKLKVQ 118
YLQPPR+W++A ES EL+ ++RL + L R+R L AEF+++EPHSKR+++KL+++
Sbjct: 69 SYLQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLR 128
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
+EV N +LEQ++ VE+ D +CD+C+R Q+NPD ++ +
Sbjct: 129 REVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDHSSSSTARPPSPS------------ 176
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
R+ G+DFFFG+RSHA + V+F+ VAPV+++ KQLVSHD KSN +
Sbjct: 177 ----------RVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVY 226
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
NYK+TFSVEI PICREDLI L P+V+ LG LGP+V+C+KVTN+IALLDP TLR L+
Sbjct: 227 NYKHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEE 286
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
+Y +FK+ LTS+QLVEYIVLD+E S E+ + GS+Y LA AQVARVSDFGKNDT+F+
Sbjct: 287 KKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFT 346
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELD-KYKGLVLPETILIKKSYEEKRLRKRSKP 417
+RTHLGHLLNPGD ALGYDLY AN ND ++D LPE IL+KKS+ KR +
Sbjct: 347 VRTHLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFA-----KRPRT 401
Query: 418 RSWKLKSLDMEVDD-SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
R WKLK L ME D +K + + EK EYEEFLRDLE N ++RF I LY+++DY+ SEMA
Sbjct: 402 RRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYR-SEMA 460
Query: 477 SVTDGEDVPSVPLDELLADLDL 498
S T G+DVP+VP++EL+ DL L
Sbjct: 461 S-TIGDDVPTVPIEELIEDLSL 481
>gi|303287797|ref|XP_003063187.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455019|gb|EEH52323.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 549
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/512 (50%), Positives = 358/512 (69%), Gaps = 30/512 (5%)
Query: 14 VGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKA 73
VG VLCC CG+ + PN A MCV C+RS+VDITEG+QK + +C +C YLQPP+ WI+A
Sbjct: 10 VGHVLCCMCGVGIPPNPAGMCVDCIRSQVDITEGIQKQCTVLYCKQCQRYLQPPKHWIRA 69
Query: 74 QLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LESKELLTFC+KR+K L RV+LV+A FIWTEPHSKR+K KL +QKEVLNGAIL+Q++VV
Sbjct: 70 DLESKELLTFCIKRVKGLQRVKLVDAGFIWTEPHSKRLKTKLTIQKEVLNGAILQQTFVV 129
Query: 134 EYVQQDHMCDSCSRVQANPDQ----WVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
E+V + HMCD+CSR AN DQ W A VQ+RQ V H+RTF YLEQLILKH I
Sbjct: 130 EFVVEWHMCDACSRAAANADQARPRWTACVQVRQKVEHKRTFLYLEQLILKHGMEENTIG 189
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I G+DF++G+RSH ++ V+F+ +V PVR+RHDKQLVSHD +N++NY+YTF +EI
Sbjct: 190 IKSQPDGLDFYYGSRSHGLRMVDFLQQVVPVRARHDKQLVSHDANNNSYNYQYTFMMEIV 249
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
P+C+ED++CLP KV++S G +GP+++C +V N++ D LR ++DA Y+R ++++
Sbjct: 250 PLCKEDIVCLPHKVSLSYGGIGPIMLCTRVGNAMQFTDVSNLRQIWIDAAAYYRQPYRAI 309
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+++ VEY+VLDVE + +V+VG +Y LAD QVARVSDFGKND I +THLGH L P
Sbjct: 310 GSAKMFVEYVVLDVE-IQRDVSVG--RYCLADVQVARVSDFGKNDLILHAKTHLGHHLQP 366
Query: 370 GDYALGYDLYSANNNDMELDKY-KGLVLPETILIKKSYEE---KRLRKRSKPRSWKLKSL 425
GD ALGYDL S D ELDKY +G+ LP+ +L+KKSY+E +R K + R+W+L+ +
Sbjct: 367 GDTALGYDLASLQIVDPELDKYRRGVQLPDVLLVKKSYQEKRRRRRAKGAGARNWRLRRM 426
Query: 426 DMEVDDSKGRT--------DQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEM-- 475
D+ DD G D E+ + E+F+++LEE+ ELR N+ L+R+ + +
Sbjct: 427 DIAEDDGGGANGGNKALTRDAERAAMDEEQFMQELEEDDELRRNVQLFRDPNAAAAAAAA 486
Query: 476 ---------ASVTDGEDVPSVPLDELLADLDL 498
D +DVP+VP++ LL +L L
Sbjct: 487 AAAAAGATETDDDDDDDVPTVPIECLLDELSL 518
>gi|440796559|gb|ELR17668.1| RNA binding protein [Acanthamoeba castellanii str. Neff]
Length = 508
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/496 (48%), Positives = 336/496 (67%), Gaps = 11/496 (2%)
Query: 5 AGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYL 64
G + P ++LCC CG + PNA+NMCV C+R +VDITEG+ K++II C C YL
Sbjct: 13 TGHYASP-VAATILCCICGTNIEPNASNMCVTCIRGQVDITEGIPKNIIIHSCKHCGRYL 71
Query: 65 QPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNG 124
PP W+ +LES+ELLTFC+KR+K +N+V+L++A F+WTEPHS+R+KVK+ VQKEV
Sbjct: 72 VPPNAWVYCELESRELLTFCLKRIKGMNKVKLIDAGFVWTEPHSRRLKVKITVQKEVFTS 131
Query: 125 AILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAA 184
IL+Q +V+E+V Q C +C+ W A VQ RQ V H+RTF YLEQLILKH A
Sbjct: 132 TILQQVFVIEFVVQMMQCPACA-ASFTDHTWQAVVQARQKVDHKRTFLYLEQLILKHSAH 190
Query: 185 ARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTF 244
IRI +M G+DF+FG+RSHA KFV+F+ V P+R + +QLVSHD KSN FNY YTF
Sbjct: 191 TNTIRIKEMPDGLDFYFGHRSHAAKFVDFLQAVTPLRYKTSEQLVSHDAKSNIFNYHYTF 250
Query: 245 SVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRS 304
S EI PICR+DL+CLP K+A LGN+ PLV+ KV+N I ++DP TL+ + A YW+
Sbjct: 251 SAEIVPICRDDLVCLPRKLAQQLGNISPLVLASKVSNLIHMIDPNTLQMIEIPAPVYWQD 310
Query: 305 SFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLG 364
F+++ T + L E+IVLD+ + K++LAD QVAR DFG NDT+F +RTHLG
Sbjct: 311 PFRAISTKQNLTEFIVLDITTSGAP----RGKHLLADVQVARTRDFGNNDTMFYVRTHLG 366
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
LNPGDYALGYDL S N N+ +L +G +P+ IL++K+Y +R + R+ R WK++
Sbjct: 367 TYLNPGDYALGYDLTSQNFNEADLGGLRGRQVPDVILVRKTYPARRRKPRN--RHWKVRQ 424
Query: 425 LDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE---MASVTDG 481
L E D+ R D +K N +YE F+++LEE+PELR ++LY+ P+ M + +
Sbjct: 425 LPKEEQDNARRGDADKQNHDYETFMQELEEDPELRAGLNLYKVPGAAPAASGGMETDEEA 484
Query: 482 EDVPSVPLDELLADLD 497
ED+P +DEL+ +L+
Sbjct: 485 EDLPEPGVDELIDELE 500
>gi|356541613|ref|XP_003539268.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal export protein
NMD3-like [Glycine max]
Length = 417
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 252/333 (75%), Positives = 287/333 (86%), Gaps = 6/333 (1%)
Query: 30 AANMCVACLRSEVDITEGLQKHVIISHCPEC-DCYLQPPRTWIKAQLESKELLTFCVKRL 88
A CV CLR EVDITEGL K +++ HCP+C C Q +K QLESKELLTFC+K+L
Sbjct: 87 AIFFCVKCLRLEVDITEGLLKRLVLVHCPKCQSCNHQ--EVGVKLQLESKELLTFCLKKL 144
Query: 89 K---NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSC 145
+ N N+VRLV+AEFIWTEPHS+R+KVK+KVQKEVLNGAILEQSY +EYVQQ+HMC+SC
Sbjct: 145 QKNLNSNKVRLVHAEFIWTEPHSRRVKVKVKVQKEVLNGAILEQSYPMEYVQQEHMCESC 204
Query: 146 SRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRS 205
SRVQANPDQWVAAV LRQHV+HRRTFFYLE LILKH A A AIRI Q++QGIDFFF N S
Sbjct: 205 SRVQANPDQWVAAVXLRQHVSHRRTFFYLEXLILKHGAIATAIRIKQIEQGIDFFFSNXS 264
Query: 206 HAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAV 265
H VKFVEF+GK+A VRSRHDKQLVSHDPKSNN+N KYTFSVEI+PI REDLIC+PP++A
Sbjct: 265 HGVKFVEFIGKIALVRSRHDKQLVSHDPKSNNYNXKYTFSVEINPIFREDLICVPPRIAA 324
Query: 266 SLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEV 325
LGN+GPLVI KVTN+IALLDPFTLRHCF+D DQYWR+SFKSLLTSRQLV+YIVLDVE
Sbjct: 325 GLGNIGPLVIXTKVTNNIALLDPFTLRHCFIDVDQYWRASFKSLLTSRQLVDYIVLDVET 384
Query: 326 VSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
VSSEV +GG+KY LADAQVAR+SDFGK T+ S
Sbjct: 385 VSSEVTIGGTKYRLADAQVARISDFGKTKTVSS 417
>gi|145354625|ref|XP_001421580.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581818|gb|ABO99873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 507
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 229/462 (49%), Positives = 335/462 (72%), Gaps = 11/462 (2%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
SVLCC C IPM PN + MCV C+R++VDITEG+ K+ ++++C +C+ YLQPP+ WI+A L
Sbjct: 1 SVLCCLCAIPMHPNPSGMCVECVRTQVDITEGISKNCVVTYCSQCERYLQPPKHWIRADL 60
Query: 76 ESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
ESKELLTFC+KR+K L +V+LV+A F+WTEPHSKR+K KL +QKEVLNGAIL+Q++V E+
Sbjct: 61 ESKELLTFCIKRIKGLQKVKLVDAGFVWTEPHSKRLKTKLTIQKEVLNGAILQQTFVTEF 120
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
V + MCD+C+R AN DQW A VQ+RQ V H+RTF +LEQ+ILKH AI I
Sbjct: 121 VVEWRMCDACARSAANSDQWNACVQVRQKVEHKRTFLFLEQMILKHGMERDAIGIKSQPD 180
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
G+DF++G+RSH ++FV+F+G V RSR DKQLVSHD SN +NY++TF VEI P+C+ED
Sbjct: 181 GLDFYYGHRSHGLRFVDFLGSVVATRSRGDKQLVSHDANSNTYNYRFTFFVEIVPVCKED 240
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQL 315
L+ +P K++ G++GP+++C +V+NS+ DP T+R ++D ++YWR F++ T++Q+
Sbjct: 241 LVVIPFKLSKEFGSVGPVMLCTRVSNSLQFTDPVTMRQIWIDQEKYWRQPFRAAATAKQM 300
Query: 316 VEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALG 375
+EY++LDVEV S K +AD +VAR SDFG NDT F ++THLG++L GD ALG
Sbjct: 301 IEYVILDVEVDQS---TRQGKLCMADVEVARSSDFGVNDTTFFVKTHLGNILQAGDTALG 357
Query: 376 YDLYSANNNDMELDKYKGL---VLPETILIKKSYEEKRLRKRSK--PRSWKLKSLDMEVD 430
YDL + D E++KY G V+P+ L+KKSY E R R+R + R+W+L+ + +E D
Sbjct: 358 YDLTNLQIVDPEMEKYSGKHQGVVPDVFLVKKSYAESRRRRRERGVARNWRLQRMQVEED 417
Query: 431 D---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD 469
+ + R ++M ++ E F ++LEE+ E R + ++++++
Sbjct: 418 EETQQRSRGSADRMAQDEELFYQELEEDEETRAQVQIFKDEN 459
>gi|357494355|ref|XP_003617466.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355518801|gb|AET00425.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 476
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 246/412 (59%), Positives = 304/412 (73%), Gaps = 9/412 (2%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T ++ CC+C P+ N ANMCV CLRS+ +ITEGL K + ++HC EC+CYLQPP TWIK
Sbjct: 14 TFHTIPCCQCASPLELNTANMCVKCLRSKTNITEGLLKKLRLTHCTECECYLQPP-TWIK 72
Query: 73 AQLESKELLTFCVKRLKN---LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
+SK+ L FC+K+L+ RVRLV+AE + +EP SK IK+K+ VQKEV+NG ILEQ
Sbjct: 73 LIPQSKQFLAFCLKKLEQNMKFKRVRLVHAETLPSEPDSKIIKIKVFVQKEVINGTILEQ 132
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
SYVVEYVQ + +C+ C+RV AN +QW A VQLRQHV+H R+ F LEQ ILKH +R
Sbjct: 133 SYVVEYVQYNRICEDCTRVNANANQWSAVVQLRQHVSHMRSIFDLEQAILKHGVGRNVVR 192
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I +M QGIDFFF S A KFV+FV PV+ + K+LVS D KSN++NYKYTFSVEI
Sbjct: 193 IKKMKQGIDFFFDRESCAKKFVDFVKAQVPVKICNGKELVSRDKKSNDYNYKYTFSVEIC 252
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
P+CREDLI LPPKVA SLGN+GP+V+C +VTN+IAL DP T CFL D YWR+ FKSL
Sbjct: 253 PVCREDLIFLPPKVASSLGNIGPIVVCTRVTNTIALFDPITSGRCFLVGDVYWRAPFKSL 312
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
LTS++LVEY+VLDVE V SEV V G K+ LA+ +VARV DFGKNDT F+I+THLG+LL
Sbjct: 313 LTSKELVEYVVLDVEEVHSEVTVDGKKFGLANVEVARVKDFGKNDTRFNIKTHLGYLLKF 372
Query: 370 GDYALGYDLYSANNND--MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
GD+A GYDL N+ D +EL +Y G ILIKK YEEKR +KR K +S
Sbjct: 373 GDHAFGYDLCGVNSGDSEIELAEYIG---GGAILIKKRYEEKRHKKRGKRQS 421
>gi|327266844|ref|XP_003218214.1| PREDICTED: 60S ribosomal export protein NMD3-like [Anolis
carolinensis]
Length = 504
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 246/511 (48%), Positives = 345/511 (67%), Gaps = 23/511 (4%)
Query: 11 PQTV--GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
P TV G++LCC+CGIP+ PN ANMCV+CLR++VDITEG+ K + + C +C+ YLQPP
Sbjct: 7 PATVSQGNILCCECGIPIPPNPANMCVSCLRTKVDITEGIPKQITVHFCKQCERYLQPPG 66
Query: 69 TWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
TW++ LES+ELLT C+K++K +L+RVRL++A F+WTEPHSKR+KVKL VQKEV+NGAIL
Sbjct: 67 TWLQCALESRELLTLCLKKIKASLSRVRLIDAGFVWTEPHSKRLKVKLTVQKEVMNGAIL 126
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q ++VEY+ MCD C RV+A D W A VQ+RQ H++TF+YLEQLILKH
Sbjct: 127 QQVFLVEYIVHSQMCDDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKHRLHQNT 185
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+RI ++ G+DF++ ++ HA K V+F+ P RS+ ++L+SHD SN +NYK TFSVE
Sbjct: 186 LRIKEIHDGLDFYYSSKQHAQKMVDFLQSTVPCRSKSSQRLISHDIHSNTYNYKSTFSVE 245
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC+++++CL PK+A SLGN+ + +C++VT+ I ++DP TL+ +D + YWR F
Sbjct: 246 IVPICKDNVVCLSPKLAQSLGNMSQICVCIRVTSGIHIIDPNTLQIAEIDGNTYWRYPFN 305
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGG-----SKYVLADAQVARVSDFGKNDTIFSIRTH 362
SL +QL E+IV+D+ V G +K+ LA+A V + S+ + F RTH
Sbjct: 306 SLFHPKQLEEFIVMDISRVHDRKQGAGAGMRSTKHTLAEAWVQKTSELNTDHQYFC-RTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLNPGD LG+DL + N ND +K +P+ ILIKKSY+ KR + R+WKL
Sbjct: 365 LGHLLNPGDLVLGFDLVNCNLNDEFANKMNPHSIPDVILIKKSYDRS---KRQRRRNWKL 421
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L E D TD E ++Y++FL DLEE+ +R N+++Y+N P E S TD E
Sbjct: 422 KEL--ERDREGMDTDDE---RQYQDFLEDLEEDETIRKNVNIYKNSGI-PVE--SDTDDE 473
Query: 483 DVPSVPLDELLADLDLKSD--DGEGDDSMRE 511
+P + L E+L DL + D GEG D + E
Sbjct: 474 GIPRISLAEMLEDLQISQDATGGEGADMLTE 504
>gi|412985300|emb|CCO20325.1| predicted protein [Bathycoccus prasinos]
Length = 565
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 251/539 (46%), Positives = 348/539 (64%), Gaps = 55/539 (10%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G VLCC C ++PN MCV C+++ VDITEG+QK + HC +C YLQPP+ WI+A
Sbjct: 8 GLVLCCLCATSISPNPTGMCVECIKTRVDITEGIQKQCSVIHCNQCARYLQPPKHWIRAD 67
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LESKELLTFC+KR+K LN+V+LV+A F+WTEPHSKR+K KL VQKEVLNGAIL+QS+VVE
Sbjct: 68 LESKELLTFCIKRVKGLNKVKLVDAGFVWTEPHSKRLKTKLTVQKEVLNGAILQQSFVVE 127
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
YV + +MCD+C+R AN DQW A VQ+RQ V H+RTF +LEQLILKH AI +
Sbjct: 128 YVVEWNMCDACARAAANADQWQACVQVRQKVEHKRTFLFLEQLILKHSMEVNAIGVKSQP 187
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DF++G+RSH +K V+F+G V P+RSR+DKQLVSHD N +NY++T VEI P+CRE
Sbjct: 188 DGLDFYYGHRSHGLKMVDFIGSVLPIRSRNDKQLVSHDANDNTYNYRFTLMVEIVPMCRE 247
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
DL+CLPPK + S G +GP+V+C +V +S+ + TLR +L+++QYWR F ++ S+Q
Sbjct: 248 DLVCLPPKTSKSFGGIGPVVLCTRVGSSMQFTETHTLRRVWLNSEQYWRYPFVAVANSKQ 307
Query: 315 LVEYIVLDVEVVSS---EVNVG-------------GSKY------------------VLA 340
L EYIVLD+E+V+ E N G GS++ +LA
Sbjct: 308 LCEYIVLDLEIVNGNEWEQNGGDDGLGENRSQLFNGSQFGGNASTIGGKQRRANRKNLLA 367
Query: 341 DAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLV----L 396
D VAR DFG ND F RTHLG +L GD ALGYDL + +D D Y V +
Sbjct: 368 DVTVARSRDFGTNDITFFTRTHLGSVLKVGDTALGYDLTNVQISDESFDSYVEKVGESRI 427
Query: 397 PETILIKKSYEEKRLRKRSKP--RSWKLKSLDM-EVDDSKGRTDQEKMNKEYEEFLRDLE 453
P+ +L+KKSY EKR ++R + R+W+LK +D+ E +++ + D EK ++ E F+++LE
Sbjct: 428 PDVVLVKKSYAEKRKKRRDRGYRRAWELKRMDINEEEETNKKDDAEKRMQDEELFMQELE 487
Query: 454 ENPELRFNISLYRNKDYQPSEMASVTDG--------------EDVPSVPLDELLADLDL 498
E+ E R I++Y+ K+ + +++P + L+ELL D+ L
Sbjct: 488 EDFEGRAQINVYKKKNEDLDAVIRANQNALANETDDEDDDENDEIPEIKLEELLDDMKL 546
>gi|118095345|ref|XP_422813.2| PREDICTED: 60S ribosomal export protein NMD3 [Gallus gallus]
Length = 504
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/507 (47%), Positives = 341/507 (67%), Gaps = 21/507 (4%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T GS+LCC CG+P+ PN ANMCV CLR+ VDITEG+ K + +S C +C+ YLQPP TWI+
Sbjct: 11 TQGSILCCHCGVPIPPNPANMCVGCLRARVDITEGIPKQLSVSFCKQCERYLQPPGTWIQ 70
Query: 73 AQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
LES+ELL C+K++K +L++VRL++A FIWTEPHSKR+K+KL VQKEV+NGA+L+Q +
Sbjct: 71 CALESRELLALCLKKIKASLSKVRLIDAGFIWTEPHSKRLKLKLTVQKEVINGAVLQQVF 130
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
VVEY+ Q MC+ C R++A D W A VQ+RQ H++TF+YLEQLILKH +RI
Sbjct: 131 VVEYLIQSQMCEDCHRIEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKHRLHQNTLRIK 189
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
++ G+DF++ ++ HA K V+F+ P RS+ ++L SHD SN +NYK TFSVEI P+
Sbjct: 190 EIHDGLDFYYSSKQHAQKMVDFLQCTVPSRSKSSQRLTSHDVHSNVYNYKSTFSVEIVPV 249
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C+++++CL PK+A SLGN+ + +C++VT+++ L+DP TL+ +D + YWR F SL
Sbjct: 250 CKDNVVCLSPKLAQSLGNMSQICVCIRVTSTVHLIDPSTLQIAEIDGNTYWRHPFNSLFN 309
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
+QL E+IV+D+ V + G+ K+ LA+A V + S+ + F THLGH+
Sbjct: 310 PKQLEEFIVMDINRVQEKKKPAGAGARSNKHTLAEAWVKKTSELNTDHQYFCC-THLGHI 368
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
LNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR R+WKLK L
Sbjct: 369 LNPGDLVLGFDLANCNLNDEFVNKMSPHNIPDVVLIKKSYDRA---KRQHRRNWKLKEL- 424
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPS 486
E D TD E ++Y++FL DLEE+ +R N+++YRN D P E S TD + P
Sbjct: 425 -ERDREGTDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRNADI-PVE--SDTDDDGAPR 477
Query: 487 VPLDELLADLDLKSD--DGEGDDSMRE 511
+ L E+L DL + D GEG + M E
Sbjct: 478 ISLAEMLEDLHISEDATGGEGANMMTE 504
>gi|410909840|ref|XP_003968398.1| PREDICTED: 60S ribosomal export protein NMD3-like [Takifugu
rubripes]
Length = 504
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/504 (46%), Positives = 345/504 (68%), Gaps = 19/504 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC CG+P+ PN ANMCVACLR++VDI+EG+ K V + C +C+ YLQPP TW++
Sbjct: 13 GNILCCTCGVPIPPNPANMCVACLRTQVDISEGIPKQVTVHFCKQCERYLQPPATWMQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL+ C+K++K+ +++VRL+ A F+WTEPHSKRIK+K+ +QKEVLNGAIL+Q +VV
Sbjct: 73 LESRELLSLCLKKIKSSMSKVRLIEAGFLWTEPHSKRIKMKVTIQKEVLNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
EYV Q MCD C RV+A D W A VQ+RQ H++TF+YLEQLILKH + A+ I +M
Sbjct: 133 EYVVQYQMCDDCHRVEAK-DFWKAVVQVRQKTAHKKTFYYLEQLILKHKLHSNALNIKEM 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
+GIDF++G + HA K V+F+ P RS+ ++L+SHD SN +NYK TFSVEI P+C+
Sbjct: 192 HEGIDFYYGLKQHAQKMVDFLQCTVPCRSKTSQRLISHDIHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL P++A SLGN+G + +C++VT++I L+DP TL+ +D + YWR+ F SL R
Sbjct: 252 DNVVCLSPRLAQSLGNMGQVCVCVRVTSTIHLIDPRTLQIAEVDGNTYWRNPFNSLCNPR 311
Query: 314 QLVEYIVLDVEVVSSE-----VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV+D++++ + + S++ LA+ V + S+ + + RT LGHLLN
Sbjct: 312 QLEEFIVMDIDIIRDQKLGAGAGMRSSRHTLAEVWVQKTSEMDTSQQ-YHCRTFLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
GD LG+D ++N ND L+K +P+ +LIKK Y+ R R K R+WKL+ +M
Sbjct: 371 IGDLVLGFDFANSNINDEYLNKMNPHHIPDVVLIKKGYDRIR---RVKRRNWKLQ--EMA 425
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D TD E ++Y++FL DLEE+ LR NI+++R+ P E S TD + P +
Sbjct: 426 RDREGMDTDDE---RQYQDFLEDLEEDEALRKNINIFRDASKIPVE--SDTDDDGAPQIS 480
Query: 489 LDELLADLDL-KSDDGEGDDSMRE 511
L E+L +L L + GEG D M +
Sbjct: 481 LAEMLEELSLMDATGGEGADMMTD 504
>gi|224060929|ref|XP_002198571.1| PREDICTED: 60S ribosomal export protein NMD3-like [Taeniopygia
guttata]
Length = 504
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/505 (47%), Positives = 340/505 (67%), Gaps = 21/505 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P+ PN ANMCV CLR++VDITEG+ K + C +C+ YLQPP TWI+
Sbjct: 13 GHILCCQCGVPIPPNPANMCVGCLRAQVDITEGIPKQGTVHFCKQCERYLQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K +L++VRL++A FIWTEPHSKRIK+KL VQKEV+NGA+L+Q +VV
Sbjct: 73 LESRELLALCLKKIKASLSKVRLIDAGFIWTEPHSKRIKLKLTVQKEVINGAVLQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
EYV Q MC+ C R++A D W A VQ+RQ H++TF+YLEQLILKH +RI ++
Sbjct: 133 EYVVQSQMCEDCHRIEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHRLHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K V+F+ P RS+ ++L+SHD SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVDFLQSTVPSRSKSSQRLISHDIHSNVYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D + YWR F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMSQICVCIRVTSTIRLIDPRTLQIADIDGNTYWRHPFNSLFHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+I++D+ V + G+ K+ LA+A V + S+ + F THLGH+LN
Sbjct: 312 QLEEFIIMDINRVHEKKKGAGAGARSVKHTLAEAWVRKTSELDTDHQYFCC-THLGHILN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND +K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEFANKMNPQHIPDVVLIKKSYDRC---KRQRRRNWKLKEL--E 425
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D TD E ++Y++FL DLEE+ +R N+++YRN D P E S TD + P +
Sbjct: 426 RDREATDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRNADI-PVE--SDTDDDGAPRIS 479
Query: 489 LDELLADLDLKSD--DGEGDDSMRE 511
L E+L DL + D GEG + + E
Sbjct: 480 LAEMLEDLHISQDATGGEGAEMLTE 504
>gi|326926160|ref|XP_003209272.1| PREDICTED: 60S ribosomal export protein NMD3-like [Meleagris
gallopavo]
Length = 504
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/507 (47%), Positives = 340/507 (67%), Gaps = 21/507 (4%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T G++LCC CG+P+ PN ANMCV CLR+ VDITEG+ K + +S C +C+ YLQPP TWI+
Sbjct: 11 TQGNILCCHCGVPIPPNPANMCVGCLRARVDITEGIPKQLGVSFCKQCERYLQPPGTWIQ 70
Query: 73 AQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
LES+ELL C+K++K +L++VRL++A FIWTEPHSKR+K+KL VQKEV+NGA+L+Q +
Sbjct: 71 CALESRELLALCLKKIKASLSKVRLIDAGFIWTEPHSKRLKLKLTVQKEVINGAVLQQVF 130
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
VVEY+ Q MC+ C R++A D W A VQ+RQ H++TF+YLEQLILKH +RI
Sbjct: 131 VVEYLIQPQMCEDCHRIEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKHRLHQNTLRIK 189
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
++ G+DF++ ++ HA K V+F+ P RS+ ++L SHD SN +NYK TFSVEI P+
Sbjct: 190 EIHDGLDFYYSSKQHAQKMVDFLQCTVPSRSKSSQRLTSHDIHSNVYNYKSTFSVEIVPV 249
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C+++++CL PK+A SLGN+ + +C++VT+++ L+DP TL+ +D + YWR F SL
Sbjct: 250 CKDNVVCLSPKLAQSLGNMSQICVCIRVTSTVHLIDPSTLQIAEIDGNTYWRHPFNSLFN 309
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
+QL E+IV+D+ V + G+ K+ LA+A V + S+ + F THLGH+
Sbjct: 310 PKQLEEFIVMDINRVQEKKKPAGAGARSNKHTLAEAWVKKTSELNTDHQYFCC-THLGHI 368
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
LN GD LG+DL + N ND ++K +P+ +LIKKSY+ KR R+WKLK L
Sbjct: 369 LNHGDLVLGFDLANCNLNDEFVNKMSPHNVPDVVLIKKSYDRA---KRQHRRNWKLKEL- 424
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPS 486
E D TD E ++Y++FL DLEE+ +R NI++YRN D P E S TD + P
Sbjct: 425 -ERDREGMDTDDE---RQYQDFLEDLEEDEAIRKNINIYRNVDV-PVE--SDTDDDGAPR 477
Query: 487 VPLDELLADLDLKSD--DGEGDDSMRE 511
+ L E+L DL + D GEG + M E
Sbjct: 478 ISLSEMLEDLHISEDATGGEGANMMTE 504
>gi|387017328|gb|AFJ50782.1| 60S ribosomal export protein NMD3-like [Crotalus adamanteus]
Length = 504
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/502 (46%), Positives = 339/502 (67%), Gaps = 20/502 (3%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
P G++LCC+CGI + PN ANMCVACLR++VDITEG+ K V I C +C+ YLQPP
Sbjct: 8 TPLHQGNILCCQCGIAIPPNPANMCVACLRTQVDITEGIPKQVTIHFCKQCERYLQPPAA 67
Query: 70 WIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W++ LES+ELL+ C+K++K +L++VRL++A F+WTEPHSKR+KVKL +QKEV+NGAIL+
Sbjct: 68 WLQCALESRELLSLCLKKIKTSLSKVRLIDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQ 127
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q +VVEY+ Q MC+ C RV+A D W A VQ+RQ H++TF+YLEQLILKH +
Sbjct: 128 QVFVVEYIVQSQMCEDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKHRLHQNTL 186
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
RI ++ G+DF++ ++ HA K V+F+ P R + ++L+SHD SN +NYK TFSVEI
Sbjct: 187 RIKEIHDGLDFYYASKQHAQKMVDFLQCTVPCRIKSSQRLISHDIHSNTYNYKSTFSVEI 246
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
P+C+++++CL PK+A SLGN+ + IC++VT++I ++DP TL+ +D + YWR F S
Sbjct: 247 VPVCKDNVVCLSPKLAQSLGNMSQICICIRVTSAIHIIDPSTLQIAEIDGNNYWRHPFNS 306
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHL 363
L +QL E+IV+D+ + G+ K+ LA+A V + S+ + F RTHL
Sbjct: 307 LFHPKQLEEFIVMDISRTYEQKQGAGAGMKSNKHSLAEAWVQKTSELNTDHQYFC-RTHL 365
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
GHLLNPGD LG+DL + N ND +K +P+ +LIKKSY+ KR + R+WKLK
Sbjct: 366 GHLLNPGDLVLGFDLVNCNLNDEFANKMNPHSVPDVVLIKKSYDRT---KRQRRRNWKLK 422
Query: 424 SLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
L + D+ TD E ++Y++FL DLEE+ +R N+++Y+N P E S D +
Sbjct: 423 ELQRDRDNMD--TDDE---RQYQDFLEDLEEDETIRKNVNIYKNP-VVPVE--SDIDDDS 474
Query: 484 VPSVPLDELLADLDLKSDDGEG 505
+P + L E+L DL + S+D G
Sbjct: 475 IPQISLTEMLEDLQI-SEDATG 495
>gi|346471561|gb|AEO35625.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/501 (46%), Positives = 331/501 (66%), Gaps = 22/501 (4%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+P+ PN +NMCVACLR+ VDITEG+ K I C C+ YLQPP W+ A LE
Sbjct: 16 ILCCQCGVPIEPNPSNMCVACLRTAVDITEGIPKQGTIYFCRGCERYLQPPAQWVYATLE 75
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+++ LN VRL++A F+WTEPHS+RIKVKL VQKEVL G +L+Q +VVE++
Sbjct: 76 SRELLGLCLKKIRGLNTVRLIDANFVWTEPHSRRIKVKLTVQKEVLGGTVLQQVFVVEFM 135
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MC+ C R +A D W A VQ+RQ V H++TFFYLEQLILKH A + I G
Sbjct: 136 VNHQMCEKCHRREAK-DFWRALVQVRQKVQHKKTFFYLEQLILKHQAHKDCLNIKACHDG 194
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF+F + A K V+F + P + +QL+SHD SN FNYK+TFSVEI+P+C++D+
Sbjct: 195 LDFYFTKKDEARKLVDFFQIMVPCKCVTSQQLISHDIHSNVFNYKHTFSVEIAPVCKDDV 254
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLPP VA SLG++ + IC++VT++I LLDP TL+ L + Q+WR F +L + +QL
Sbjct: 255 VCLPPAVARSLGSMSQICICLRVTSAIHLLDPTTLQVSELTSQQFWRQPFSALCSPKQLT 314
Query: 317 EYIVLDVEVVSS---EVNVGGSK----YVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+V+D+ V V G K +VLADA + R + G ++ RTHLGHLL P
Sbjct: 315 EYVVMDINFVKDVDRTVFAGQGKLSFRHVLADAWIIRSCELGTHENYIHTRTHLGHLLKP 374
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD A+G+DL +AN ND +K K +PE +L+KK Y ++ R + R WKL+ L +++
Sbjct: 375 GDSAMGFDLANANINDANFEKLKSEKIPEVVLVKKVYGDR--MSRCQRRRWKLRRLQVDM 432
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE--DVPSV 487
+ TD + ++Y +FL DLEE+ R N+++Y++ D ++A TD E D P +
Sbjct: 433 E-----TDTSSVARDYTDFLEDLEEDAGYRQNVNIYKDSD----KIAVDTDDEDGDAPRI 483
Query: 488 PLDELLADLDLKSDD-GEGDD 507
L E+L DL L+ D G+GD+
Sbjct: 484 TLQEMLDDLQLEDDPMGDGDN 504
>gi|391344979|ref|XP_003746771.1| PREDICTED: 60S ribosomal export protein NMD3 [Metaseiulus
occidentalis]
Length = 507
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/503 (45%), Positives = 332/503 (66%), Gaps = 22/503 (4%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T G +LCC+CGIP+APN ANMCV CL EVDITE + K ++ C C+ YLQPP W+
Sbjct: 11 TTGRILCCRCGIPIAPNPANMCVDCLSREVDITESIPKQGVLQFCKGCERYLQPPAQWVV 70
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A LES+ELL C+KR+K LN+VRL++A FIWTEPHSKR+KVKL +QKEV+ GAI+EQ+++
Sbjct: 71 ASLESRELLAICLKRIKGLNKVRLIDAGFIWTEPHSKRVKVKLTIQKEVMGGAIIEQAFI 130
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VE+ MCD C R +A D W A VQ RQ V H++T FY+EQLILK+DA AI I
Sbjct: 131 VEFTVNGLMCDQCHRREAK-DFWRAVVQCRQKVDHKKTLFYMEQLILKYDAHKDAINIKM 189
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
+ +GIDFFF + A K V+F + P++S +QL+SHD SNNFNYK TFSVEI+P+C
Sbjct: 190 VHEGIDFFFTKKDEARKLVQFFQTMVPIKSVESQQLISHDIHSNNFNYKTTFSVEIAPVC 249
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
+ D++CLP +A LG++G + IC++VT S+ ++DP TL+ + + YW++ F+ L
Sbjct: 250 KGDVVCLPTVLARHLGSIGQICICLRVTASVHVIDPATLQLAEIPSHLYWKTPFRGLFAP 309
Query: 313 RQLVEYIVLDVEVV--SSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
+ LVEYIV+++E + S V G ++VLA+ V R S+ G ++ +THLGH
Sbjct: 310 KHLVEYIVMEIERIGESQMVTFAGQGKLSDRHVLANVFVIRASELGTHENYIHCKTHLGH 369
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
L GD LG+DL +AN ND L+K +PE +LI+K + K R++ R W+LK +
Sbjct: 370 YLREGDSVLGFDLANANLNDPNLNKLPSDKVPEVVLIRKYWGSK--ADRAQRRRWRLKRM 427
Query: 426 DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVP 485
++++DDS + +++ EF DLEE+P LR N+++Y++ + ++A ++ D P
Sbjct: 428 NLDLDDSSS------VGRDFNEFCEDLEEDPALRQNVNIYKDSE----KIAVESEAGDAP 477
Query: 486 SVPLDELLADLDLKSDDGEGDDS 508
+ L E+L D+ L DD DD+
Sbjct: 478 HISLQEMLDDMTL--DDEAMDDA 498
>gi|443730657|gb|ELU16081.1| hypothetical protein CAPTEDRAFT_174567 [Capitella teleta]
Length = 510
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/504 (44%), Positives = 338/504 (67%), Gaps = 17/504 (3%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
+ +LCC+CG + PN ANMCVACLR++VDI+EG+ K ++ C +C+ YLQPP W+K
Sbjct: 11 STAIILCCQCGTQIEPNPANMCVACLRAQVDISEGIPKQAVLHFCRQCERYLQPPSCWLK 70
Query: 73 AQLESKELLTFCVKRLKNLNR-VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A LES+ELL C+K++K +N+ VRLV+A FIWTEPHSKR+KVK+ +QKEV+NGA+L+Q +
Sbjct: 71 AALESRELLAVCLKKVKGINKEVRLVDAGFIWTEPHSKRLKVKMTIQKEVMNGAVLQQVF 130
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
+VE+V + MC+ C RV+A D W A VQ+RQ TH++T FYLEQL+LKH A A + I
Sbjct: 131 IVEFVVHNQMCEDCHRVEAK-DYWRACVQIRQKTTHKKTLFYLEQLMLKHGAHANSTSIK 189
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
Q+ G+DF++G + A + V+F+ V P RS K+L+SHD SN +NYK +FS EI P+
Sbjct: 190 QVHDGLDFYYGAQQDARRLVDFLSSVVPCRSSFAKELISHDIHSNVYNYKISFSAEIVPV 249
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C+++++C+ K+A SLGNLG + + ++VT ++ L+DP T + ++ ++YWR+ F SL
Sbjct: 250 CKDNVVCVGSKLAQSLGNLGQICVVLRVTQAVHLIDPNTCQIAEVNGEKYWRNPFLSLCD 309
Query: 312 SRQLVEYIVLDVEVV----SSEVNVGGS---KYVLADAQVARVSDFGKNDTIFSIRTHLG 364
RQLVEY V+D+E + V GG+ K++LAD V + S+ G R+HLG
Sbjct: 310 PRQLVEYTVMDIEPIMDKDRKHVAGGGAVSHKHILADVYVIKNSELGTTAEQVHCRSHLG 369
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
HLL PGD LG+D+ +AN+N+ L+K K +P+ +L+KK Y + KR++ R WKLK
Sbjct: 370 HLLQPGDTVLGFDVRNANHNNEHLEKMKSERIPDVVLVKKLYSDS--TKRARRRKWKLKH 427
Query: 425 LDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDV 484
+ D+ D + +N++Y +FL DLEE+P R I++Y+++ E +D ED
Sbjct: 428 I-----DAAHEMDTDSVNRDYNDFLEDLEEDPASRQQINIYKDEAKIAVEPEYESDNEDA 482
Query: 485 PSVPLDELLADLDLKSDDGEGDDS 508
P + L E++ DL + S+D G++
Sbjct: 483 PQISLMEMMEDLKI-SEDATGEEG 505
>gi|196008655|ref|XP_002114193.1| hypothetical protein TRIADDRAFT_27425 [Trichoplax adhaerens]
gi|190583212|gb|EDV23283.1| hypothetical protein TRIADDRAFT_27425 [Trichoplax adhaerens]
Length = 483
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/480 (47%), Positives = 319/480 (66%), Gaps = 7/480 (1%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC+CG + N ANMCV C+R+ VDITEG+ K + C C YLQPP TW++ LES
Sbjct: 1 LCCQCGTLIDANPANMCVGCIRAHVDITEGIPKQSTLYFCRFCLRYLQPPSTWVQCVLES 60
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQ 137
+ELL C+KRLK L +VRLV+A F+WTEPHSKR+KVKL VQKEVLN IL+Q +VVEYV
Sbjct: 61 RELLALCLKRLKGLTKVRLVDAGFVWTEPHSKRVKVKLTVQKEVLNCTILQQQFVVEYVV 120
Query: 138 QDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGI 197
MCD C R +A D W A Q+RQ +H++TFFYLEQL++KH A + A++I G+
Sbjct: 121 HHQMCDECQRREAK-DYWKAVCQVRQRTSHKKTFFYLEQLLIKHQAHSNAVKIVDEANGL 179
Query: 198 DFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLI 257
DFFF ++ + K V+F+ V P R + + LVSHD SN +NYKYTFSVEI PIC++D++
Sbjct: 180 DFFFASKDDSRKLVDFLQSVVPCRYKTSQHLVSHDCHSNIYNYKYTFSVEIVPICKDDVV 239
Query: 258 CLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVE 317
CLP KVA SLGN+G L+IC ++TN+I L DP TL+ + D +W+ F ++ T +QL+E
Sbjct: 240 CLPLKVANSLGNIGQLLICTQITNTIHLTDPTTLQTVSVQPDVFWKQPFHTICTQKQLIE 299
Query: 318 YIVLDVEVV-SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGY 376
Y +L++E + + KY LAD + + D G +DT F RTHLG++++PGD LG+
Sbjct: 300 YTILEIEFIEQKDARYSSEKYKLADVWIVKSKDLGISDTQFHCRTHLGNIISPGDTILGF 359
Query: 377 DLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRT 436
D+ +N N+ K +P+ IL+KK + +K RKR R+WKLKSL E +
Sbjct: 360 DINGSNVNNDNFYKMPSRKVPDVILVKKHFGDK--RKRHSKRNWKLKSLKKE---TGANI 414
Query: 437 DQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADL 496
D E + +Y+ FL DLEE+P R N+++Y++ ++ ++ + E +PS+ L+E+L DL
Sbjct: 415 DMETDDMDYDNFLEDLEEDPTYRQNVNIYKDPKFKGNKDSRPDPDEQLPSIGLEEMLEDL 474
>gi|449277297|gb|EMC85532.1| 60S ribosomal export protein NMD3, partial [Columba livia]
Length = 489
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/502 (46%), Positives = 336/502 (66%), Gaps = 21/502 (4%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC+CG+ + PN ANMCV CLR++VDITEG+ K + C +C YLQPP TWI+ LES
Sbjct: 1 LCCQCGVAIPPNPANMCVGCLRAQVDITEGIPKQSTLHFCKQCQRYLQPPGTWIQCTLES 60
Query: 78 KELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
+ELL C+K++K +L++VRL++A FIWTEPHSKR+K+KL VQKEV+NGA+L+Q +VVEY+
Sbjct: 61 RELLALCLKKIKASLSKVRLIDAGFIWTEPHSKRLKLKLTVQKEVINGAVLQQVFVVEYL 120
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q MC+ C R++A D W A VQ+RQ H++TF+YLEQLILKH +RI ++ G
Sbjct: 121 VQSQMCEDCHRIEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHRLHQNTLRIKEIHDG 179
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ ++ A K V+F+ P RS+ ++L+SHD SN +NYK TFSVEI PIC++++
Sbjct: 180 LDFYYSSKQQAQKMVDFLQCTVPSRSKSSQRLISHDIHSNVYNYKSTFSVEIVPICKDNV 239
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL PK+A SLGN+ + +C++VT+++ L+DP TL+ +D + YWR F SL +QL
Sbjct: 240 VCLSPKLAQSLGNMSQICVCIRVTSTVHLIDPRTLQIAEIDGNTYWRHPFNSLFHPKQLE 299
Query: 317 EYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
E+I++D+ V + V G+ K+ LA+A V + S+ + F THLGH+LNPGD
Sbjct: 300 EFIIMDINRVQEKKKVAGAGARSNKHTLAEAWVRKTSELDTDHQYFCC-THLGHILNPGD 358
Query: 372 YALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDD 431
LG+DL + N ND +K +P+ +LIKKSY+ KR + R+WKL+ L E D
Sbjct: 359 LVLGFDLANCNLNDEFANKMNPHEIPDVVLIKKSYDRT---KRQRRRNWKLREL--ERDR 413
Query: 432 SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDE 491
TD E ++Y++FL DLEE+ +R N+++YRN D P E S TD + P + L E
Sbjct: 414 EGADTDDE---RQYQDFLEDLEEDEAIRKNVNIYRNADI-PVE--SDTDDDGAPRISLAE 467
Query: 492 LLADLDLKSD--DGEGDDSMRE 511
+L DL + D GEG + M E
Sbjct: 468 MLEDLHISEDATGGEGANMMTE 489
>gi|328871042|gb|EGG19414.1| 60S ribosomal export protein [Dictyostelium fasciculatum]
Length = 526
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/505 (43%), Positives = 339/505 (67%), Gaps = 20/505 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
Q +LCC CG+ +A N +NMCV C+RS+VDITEG+ K +++ C C+ YLQPP W
Sbjct: 7 QKESHILCCICGVLIAANPSNMCVDCIRSQVDITEGIPKQLMVQWCRGCNRYLQPPNHWA 66
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
+LES+ELLT C+KR+K L +V+LV+A ++WTEPHS+R+KVKL +QKEV AIL+Q +
Sbjct: 67 ACELESRELLTLCIKRIKGLTKVKLVDAGWVWTEPHSRRLKVKLTIQKEVFASAILQQVF 126
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
+VE+V C SC R+ A D W A VQLRQ V H+RTF +LEQ+ILKH+A ++A+ I
Sbjct: 127 IVEFVVSGQQCTSCQRLDAK-DTWNAVVQLRQKVDHKRTFLFLEQVILKHNAHSQALNIK 185
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ G+DF+F N++HA KFVEF+ +APVRS+ +QL+SHD ++N N+K++ SVEI P+
Sbjct: 186 ERSDGLDFYFANKNHASKFVEFISAIAPVRSKKSEQLISHDEQNNTANHKHSNSVEIVPL 245
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C++DL+CLPPK+ SLG +GP+V+ KV+N I ++DP +L+ + + +W + F+++
Sbjct: 246 CKDDLVCLPPKLMTSLGGIGPIVLVTKVSNVIHIIDPNSLQTAEISSTSFWNTPFRAITG 305
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
+Q++E+ VLDV + K+ LAD Q+ R SDFG ND F +RTHLGHL N GD
Sbjct: 306 YKQMIEFTVLDVSLTGER----KGKFALADVQLVRSSDFGVNDNTFFVRTHLGHLFNAGD 361
Query: 372 YALGYDLYSA--NNNDME-LDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
ALGYDL +A N++DME + K++ +PE +L+KK++ L K R W +++++ E
Sbjct: 362 LALGYDLSTAIFNDSDMEAIGKHRSANIPEIVLVKKTFPVTDL----KQRHWTIRNMNKE 417
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN-------KDYQPSEMASVTDG 481
++ + D EK ++ ++F+R++EE+ ++R I++Y+ K + S +
Sbjct: 418 GQENIRKNDVEKAERDQQDFVREIEEDADMRSKINIYKQGNAAEILKQRIKHKKDSGYED 477
Query: 482 EDVPSVPLDELLADLDLKSDD-GEG 505
++ V L+ELL ++D+ D GE
Sbjct: 478 HEINEVTLEELLDEMDINDQDFGEA 502
>gi|89886075|ref|NP_989367.2| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
gi|89268245|emb|CAJ82727.1| nmd3 homolog (s. cerevisiae) [Xenopus (Silurana) tropicalis]
Length = 504
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 242/505 (47%), Positives = 345/505 (68%), Gaps = 21/505 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC+CGIP+ PN ANMCV+CLR +VDI+EG+ K V + C +C+ YLQPP TWI+
Sbjct: 13 GNILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+Y+ Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++
Sbjct: 133 DYIVQSQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+SHD +N +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++L+CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + YWRS F SL +
Sbjct: 252 DNLVCLSPKLAQSLGNMNQICICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV+D ++V G+ K++LA+ V + S+ + RTHLGHLLN
Sbjct: 312 QLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQQ-YHCRTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK ++E
Sbjct: 371 PGDLVLGFDLVNCNLNDEFINKMNPHHIPDVVLIKKSYDRT---KRQRRRNWKLK--EIE 425
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D TD E ++Y++FL DLEE+ +R N+++Y+N + P E S TD E P +
Sbjct: 426 RDREGMDTDDE---RQYQDFLEDLEEDEVIRKNVNIYKNANL-PVE--SDTDEEGAPRIS 479
Query: 489 LDELLADLDLKSD--DGEGDDSMRE 511
L E+L DL + D GEG + + E
Sbjct: 480 LAEMLEDLHISQDATGGEGAEMLTE 504
>gi|82186247|sp|Q6P2Z6.1|NMD3_XENTR RecName: Full=60S ribosomal export protein NMD3
gi|39849988|gb|AAH64238.1| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
gi|51703739|gb|AAH81303.1| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
Length = 504
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/505 (47%), Positives = 345/505 (68%), Gaps = 21/505 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC+CGIP+ PN ANMCV+CLR +VDI+EG+ K V + C +C+ YLQPP TWI+
Sbjct: 13 GNILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+Y+ Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++
Sbjct: 133 DYIVQSQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+SHD +N +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++L+CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + YWRS F SL +
Sbjct: 252 DNLVCLSPKLAQSLGNMNQICICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV+D ++V G+ K++LA+ V + S+ + RTHLGHLLN
Sbjct: 312 QLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQQ-YHCRTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK ++E
Sbjct: 371 PGDLVLGFDLANCNLNDEFINKMNPHHIPDVVLIKKSYDRT---KRQRRRNWKLK--EIE 425
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D TD E ++Y++FL DLEE+ +R N+++Y+N + P E S TD E P +
Sbjct: 426 RDREGMDTDDE---RQYQDFLEDLEEDEVIRKNVNIYKNANL-PVE--SDTDEEGAPRIS 479
Query: 489 LDELLADLDLKSD--DGEGDDSMRE 511
L E+L DL + D GEG + + E
Sbjct: 480 LAEMLEDLHISLDATGGEGAEMLTE 504
>gi|331243536|ref|XP_003334411.1| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|403161984|ref|XP_003322268.2| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309313401|gb|EFP89992.1| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375172013|gb|EFP77849.2| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 553
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 235/533 (44%), Positives = 337/533 (63%), Gaps = 39/533 (7%)
Query: 14 VGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKA 73
VG VLC CG + PN+A CV+CLR+ +DIT + K +S C C YL PP W+ A
Sbjct: 17 VGHVLCADCGTAIEPNSAGRCVSCLRNTIDITAEIPKQNTLSFCRNCSRYLSPPSAWLLA 76
Query: 74 QLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
+LESKELL C++RLK L++VRLV+A FIWTEPHSKR++VKL VQ+EVL +L+Q + V
Sbjct: 77 ELESKELLAICLRRLKGLSKVRLVDAGFIWTEPHSKRLRVKLTVQQEVLTSTVLQQIFEV 136
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
EYV Q C +C R+ A + W A VQ+RQ V H+RTF YLEQ+ILKH+A + I +
Sbjct: 137 EYVVQHTQCPACCRLAAK-NMWRALVQIRQKVNHKRTFLYLEQIILKHNADKDTVAIKES 195
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DFF+ R HA+K VEF+ +APVRS+ +QL+S D K++ NYK+T+SVE++PIC+
Sbjct: 196 KDGLDFFYATRQHALKMVEFLNAIAPVRSKSSEQLISADEKNSTANYKFTYSVELAPICK 255
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
+D++CLPPK+A + GN+ L+ C +V SI L+DP TL+ L YW++ F SL +
Sbjct: 256 DDIVCLPPKLARAQGNISQLLACTRVGTSIHLVDPITLQFVDLSGVLYWKNPFPSLASLG 315
Query: 314 QLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYA 373
Q +E++VLD+E + V +++LADAQV+ VS +D IF RTH+G +L PGD
Sbjct: 316 QSIEFVVLDIE-PTCHPPVTCGRFILADAQVSPVSSSMNDDVIFHTRTHMGGILKPGDTV 374
Query: 374 LGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDS- 432
GY L ++N ND D +PE IL++K+Y + RK++KPR+WKLKS+ +E + +
Sbjct: 375 RGYHLANSNFNDPSYDALNPSRIPEIILVRKTYPNR--RKKNKPRNWKLKSIAIEANTTA 432
Query: 433 -------------------KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK----- 468
KG +Q K+ EYE FLRDLEE+PELR N+ L++ +
Sbjct: 433 EEHVGLGRGKIDAASKKSGKGTAEQAKVEAEYEMFLRDLEEDPELRQNVQLFKAQPASKK 492
Query: 469 ------DYQPSEMASVT----DGEDVPSVPLDELLADLDLKSDDGEGDDSMRE 511
D + ++ SV D +D P + LDELL ++D + + G +++ E
Sbjct: 493 LPADAMDLEGADTESVAETEMDDDDFPKIQLDELLDEMDGLNLNENGTETIAE 545
>gi|66824611|ref|XP_645660.1| 60S ribosomal export protein [Dictyostelium discoideum AX4]
gi|74858119|sp|Q55BF2.1|NMD3_DICDI RecName: Full=60S ribosomal export protein NMD3
gi|60473844|gb|EAL71783.1| 60S ribosomal export protein [Dictyostelium discoideum AX4]
Length = 530
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/466 (47%), Positives = 321/466 (68%), Gaps = 11/466 (2%)
Query: 7 MFTVPQT-VGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
M +PQ ++LCC CG+ + N +NMCV C++S+VDITEG+ K + I C C YLQ
Sbjct: 1 MEYIPQVKQANILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWCRGCARYLQ 60
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP W A+LES+ELLT C+KR+K LN+V+LV+A ++WTEPHSKR+KVKL +QKEV A
Sbjct: 61 PPNHWAIAELESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSA 120
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q +++E++ Q CD C + +A D W + VQLRQ V H+RTF Y+EQLILKH+A +
Sbjct: 121 ILQQIFIIEFIVQGQQCDKCQKFEAK-DTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHS 179
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
+ + I + G+DFFF NR+HA+KFVEF+ + PV+++ +QL+S D ++N NYKYTFS
Sbjct: 180 QTLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDEQNNAANYKYTFS 239
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
VEI P+ ++D++CLPPK+A LGN+GPLV+ KV+N I +DP TL + A +W S
Sbjct: 240 VEIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLHTGEISALTFWNSP 299
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
F++L + +QLVE+ VLDV + + +Y L+D Q+ R +DFG ND I+ IR+HLG+
Sbjct: 300 FRALSSYKQLVEFTVLDVNLTGA----TRGRYALSDIQLMRSADFGANDNIYDIRSHLGN 355
Query: 366 LLNPGDYALGYDLYSANNNDMELDKY-KGLVLPETILIKKSYEEKR-LRKRSKPRSWKLK 423
+LNPGD ALGYD+ S+N D +L K LP+ +L+KK+Y K R + R W K
Sbjct: 356 ILNPGDLALGYDVASSNFPDSDLAGMKKNQQLPDFVLVKKTYPSKNDFRFK---RHWYFK 412
Query: 424 SLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD 469
+ E ++ + + ++M ++ EEFLR++E +PELR I++Y+ D
Sbjct: 413 EIPKEGIENPKKFEIDQMERDREEFLREIEADPELRSKINIYKEAD 458
>gi|426218020|ref|XP_004003248.1| PREDICTED: 60S ribosomal export protein NMD3 [Ovis aries]
Length = 503
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 236/508 (46%), Positives = 335/508 (65%), Gaps = 21/508 (4%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
V T G +LCC CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP T
Sbjct: 8 VKHTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVFISFCKQCQRYFQPPAT 67
Query: 70 WIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W++ LES++LL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+
Sbjct: 68 WVQCALESRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQ 127
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q +VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +
Sbjct: 128 QVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTL 186
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI
Sbjct: 187 RIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEI 246
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PIC+++++CL PK+A SLGN+ + +C++VT+ I L+DP TL+ +D + +W F S
Sbjct: 247 VPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNS 306
Query: 309 LLTSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
L +QL E+IV++ +V S+ + K+ L + V + S+ + F RTHL
Sbjct: 307 LCHPKQLEEFIVMECSIVRDIKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHL 365
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
GHLLNPGD LG+DL + N ND ++K K +P+ +LIKKSY+ KR + R+WKLK
Sbjct: 366 GHLLNPGDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRS---KRQRRRNWKLK 422
Query: 424 SLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
L D TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E
Sbjct: 423 ELAR--DRENVDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEG 474
Query: 484 VPSVPLDELLADLDLKSD--DGEGDDSM 509
P V L E+L DL + D GEG+ M
Sbjct: 475 APRVSLAEMLEDLHISQDATGGEGESMM 502
>gi|355707455|gb|AES02963.1| NMD3-like protein [Mustela putorius furo]
Length = 503
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/505 (46%), Positives = 337/505 (66%), Gaps = 20/505 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+T G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI
Sbjct: 10 RTPGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWI 69
Query: 72 KAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q
Sbjct: 70 QCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQV 129
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +RI
Sbjct: 130 FVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRI 188
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DF++ ++ HA K VEF+ P R++ ++L+S D SN +NYK TFSVEI P
Sbjct: 189 KEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRNKASQRLISQDIHSNTYNYKSTFSVEIVP 248
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC+++++CLPPK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL
Sbjct: 249 ICKDNVVCLPPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLC 308
Query: 311 TSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
+QL E+IV++ +V S+ + K+ L + V + S+ + F RTHLGH
Sbjct: 309 HPKQLEEFIVMECSIVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGH 367
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
LLNPGD LG+DL + N ND ++K +P+ +LIKK+Y+ KR + R+WKLK L
Sbjct: 368 LLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKNYDRT---KRQRRRNWKLKEL 424
Query: 426 DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVP 485
D TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P
Sbjct: 425 AR--DRENMDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAP 476
Query: 486 SVPLDELLADLDLKSD-DGEGDDSM 509
+ L E+L DL + D GE +SM
Sbjct: 477 RISLAEMLEDLHISQDATGEEGESM 501
>gi|194222558|ref|XP_001493978.2| PREDICTED: 60S ribosomal export protein NMD3 [Equus caballus]
Length = 503
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/502 (46%), Positives = 334/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAAFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W VQ+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQPQMCGDCHRVEAK-DFWKTVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSQPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV+D +V S+ + K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMDCSIVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELPRE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNVYRDSTI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE DSM
Sbjct: 480 LAEMLEDLHISQDATGEEGDSM 501
>gi|427789331|gb|JAA60117.1| Putative 60s ribosomal export protein nmd3 [Rhipicephalus
pulchellus]
Length = 511
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/499 (47%), Positives = 328/499 (65%), Gaps = 22/499 (4%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+P+ PN +NMCV CLR+ VDITE + K I C C+ YLQPP WI A LE
Sbjct: 16 ILCCQCGLPIEPNPSNMCVNCLRNLVDITEEIPKQGTIYFCRGCERYLQPPAHWIYATLE 75
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+++ L+ VRLV+A F+WTEPHS+RIKVKL VQKEV+ G +L+Q +VVE++
Sbjct: 76 SRELLGLCLKKIRGLSSVRLVDAGFVWTEPHSRRIKVKLTVQKEVIGGTVLQQVFVVEFM 135
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MCD+C R +A D W A VQ+RQ V H++TFFYLEQLILKH A + I G
Sbjct: 136 INHQMCDNCHRREAK-DFWRALVQVRQKVQHKKTFFYLEQLILKHQAHKDCLNIKAHHDG 194
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF+F + A K V+F + P + +QL+SHD SN FNYK+TFSVEI+P+C++D+
Sbjct: 195 LDFYFSKKDEARKLVDFFQTMVPCKYIMSQQLISHDIHSNTFNYKHTFSVEIAPVCKDDV 254
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
ICLPP VA SLG++ + IC++VT++I LLDP TL+ L + Q+WR F +L T +QL
Sbjct: 255 ICLPPAVARSLGSMNQICICLRVTSAIHLLDPATLQVSELSSQQFWRQPFGALCTPKQLT 314
Query: 317 EYIVLDVEVVSS---EVNVGGSK----YVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+V+D+ V V G K +VLADA V R + G ++ +THLGHLL P
Sbjct: 315 EYVVMDINFVKDVDRTVFAGQGKLSFRHVLADAWVIRACELGTHENYIHTKTHLGHLLKP 374
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD A+G+DL +AN ND +K K +PE +L+KK Y ++ R + R WKL+ L +++
Sbjct: 375 GDSAMGFDLANANINDTHFEKLKSEKIPEVVLVKKVYGDR--MSRCQRRRWKLQRLQVDM 432
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE--DVPSV 487
+ TD + ++Y +FL DLEE+ R N+++Y++ D ++A TD E D P +
Sbjct: 433 E-----TDTSSVARDYTDFLEDLEEDAAYRQNVNIYKDND----KIAVDTDDEDGDAPRI 483
Query: 488 PLDELLADLDLKSDDGEGD 506
L E+L DL L+ DD GD
Sbjct: 484 TLQEMLDDLQLE-DDPMGD 501
>gi|149048326|gb|EDM00902.1| rCG62699, isoform CRA_a [Rattus norvegicus]
Length = 525
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/508 (45%), Positives = 340/508 (66%), Gaps = 20/508 (3%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
+V ++ G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP
Sbjct: 29 SVDRSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPA 88
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W++ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL
Sbjct: 89 SWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAIL 148
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+
Sbjct: 149 QQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNT 207
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVE
Sbjct: 208 LRIKEIHDGLDFYYSSKQHAQKMVEFLQGTVPCRYKSSQRLISQDIHSNTYNYKSTFSVE 267
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC+++++CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + +W F
Sbjct: 268 IVPICKDNVVCLSPKLAQSLGNMNQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFN 327
Query: 308 SLLTSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTH 362
SL +QL E+IV++ +V ++ V K+ L + + + S+ + F RTH
Sbjct: 328 SLCHPKQLEEFIVIECSIVRDLKRNAGAGVISKKHTLGEVWIQKTSEMDTDKQYFC-RTH 386
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLNPGD LG+DL + N ND ++K K +P+ +LIKKSY+ KR + R+WKL
Sbjct: 387 LGHLLNPGDLVLGFDLANCNLNDEHVNKMKSDRVPDVVLIKKSYDRT---KRQRRRNWKL 443
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L + +D TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E
Sbjct: 444 KELARDREDMD--TDDE---RQYQDFLEDLEEDETIRKNVNIYRDSTV-PVE--SDTDDE 495
Query: 483 DVPSVPLDELLADLDLKSD-DGEGDDSM 509
P + L E+L DL + D GE SM
Sbjct: 496 GAPRISLAEMLEDLRISQDATGEEGASM 523
>gi|157818501|ref|NP_001101152.1| 60S ribosomal export protein NMD3 [Rattus norvegicus]
gi|149048327|gb|EDM00903.1| rCG62699, isoform CRA_b [Rattus norvegicus]
gi|171846766|gb|AAI61998.1| Nmd3 protein [Rattus norvegicus]
Length = 503
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/513 (45%), Positives = 339/513 (66%), Gaps = 30/513 (5%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
+V ++ G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP
Sbjct: 7 SVDRSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPA 66
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W++ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL
Sbjct: 67 SWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAIL 126
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+
Sbjct: 127 QQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNT 185
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVE
Sbjct: 186 LRIKEIHDGLDFYYSSKQHAQKMVEFLQGTVPCRYKSSQRLISQDIHSNTYNYKSTFSVE 245
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC+++++CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + +W F
Sbjct: 246 IVPICKDNVVCLSPKLAQSLGNMNQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFN 305
Query: 308 SLLTSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTH 362
SL +QL E+IV++ +V ++ V K+ L + + + S+ + F RTH
Sbjct: 306 SLCHPKQLEEFIVIECSIVRDLKRNAGAGVISKKHTLGEVWIQKTSEMDTDKQYFC-RTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLNPGD LG+DL + N ND ++K K +P+ +LIKKSY+ KR + R+WKL
Sbjct: 365 LGHLLNPGDLVLGFDLANCNLNDEHVNKMKSDRVPDVVLIKKSYDRT---KRQRRRNWKL 421
Query: 423 KSL-----DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMAS 477
K L DM+ DD ++Y++FL DLEE+ +R N+++YR+ P E S
Sbjct: 422 KELARDREDMDTDDE----------RQYQDFLEDLEEDETIRKNVNIYRDSTV-PVE--S 468
Query: 478 VTDGEDVPSVPLDELLADLDLKSD-DGEGDDSM 509
TD E P + L E+L DL + D GE SM
Sbjct: 469 DTDDEGAPRISLAEMLEDLRISQDATGEEGASM 501
>gi|409074971|gb|EKM75358.1| hypothetical protein AGABI1DRAFT_46606 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 574
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/579 (42%), Positives = 345/579 (59%), Gaps = 84/579 (14%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+C ACLR+ VDITEG+ K +++C C+ +L PP
Sbjct: 3 FVPAPAVHRVLCADCGTPIVPNSANLCAACLRNTVDITEGIPKLASVAYCRNCERFLNPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
W A+ ES ELL+ C+K+LK LN+VRL +A FIWTEPHSKR++V + +QKE L IL
Sbjct: 63 AAWTIARPESPELLSICLKKLKGLNKVRLTDARFIWTEPHSKRLRVAITIQKEALTNTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ++ +E++ Q C SC+R+ A + W A VQ+RQ V H+RTF YLEQLILKH+A
Sbjct: 123 EQTFEIEFLVQYGQCSSCARLAAK-NTWKAMVQVRQKVPHKRTFLYLEQLILKHNAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DF++ +R+HA+K VEF+ V PVRS+ +QL+S D S +YK+T+SVE
Sbjct: 182 ISVREVRDGLDFYYSHRNHAIKMVEFLTSVVPVRSKSSEQLLSTDTHSGTSDYKFTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I+PIC++DL+C+P K+A SLGN+ PL IC ++ NS +L+DP TL+ C + YWR F+
Sbjct: 242 IAPICKDDLVCMPLKLARSLGNIHPLTICARIGNSFSLIDPATLQTCDVSQSLYWRQPFE 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF----------------- 350
SL + LVE+ VLD+E + + KY++ADAQVA S F
Sbjct: 302 SLSSVTDLVEFTVLDIE---PDYSKSKGKYLMADAQVALASAFRSSGGIPEDVMMDYDTM 358
Query: 351 GKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKR 410
G+ +IF RTHLG +L PGD ALGY L ++N N E ++P+ IL+KK+Y +
Sbjct: 359 GQTSSIFHTRTHLGAILQPGDTALGYHLTNSNYNSTEFASLPSNLIPDIILVKKAYPNR- 417
Query: 411 LRKRSKPRSWKLKSLDMEVDDSKGRT-------------DQEKMNKEYEEFLRDLEENPE 457
RK+SK RSWKL+S+ E + +G T DQ+K++++YE FLRDLEE+PE
Sbjct: 418 -RKKSKSRSWKLRSIAKEPGE-EGETGSGRGVVGRLGGRDQKKVDEDYELFLRDLEEDPE 475
Query: 458 LRFNISLY---------------------------------------RNKDYQPSEMASV 478
+R ++LY R K+ +M+ V
Sbjct: 476 MRAGVNLYKAKKDTEDNEERNDVRMVAPGTKGPAHGASKKKEKKEKVRGKESMDVDMSGV 535
Query: 479 TDGE---DVPSVPLDELLADLDLKS-----DDGEGDDSM 509
+GE D P V LDELL D D + +DGE S+
Sbjct: 536 EEGEGEPDFPEVRLDELLEDFDEMTLGDEIEDGEEHPSL 574
>gi|193787720|dbj|BAG52923.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/505 (46%), Positives = 335/505 (66%), Gaps = 20/505 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
++ G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI
Sbjct: 10 RSSGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWI 69
Query: 72 KAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q
Sbjct: 70 QCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQV 129
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI
Sbjct: 130 FVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRI 188
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI P
Sbjct: 189 KEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVP 248
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC+++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL
Sbjct: 249 ICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLC 308
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
+QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGH
Sbjct: 309 HPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGH 367
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
LLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L
Sbjct: 368 LLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKEL 424
Query: 426 DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVP 485
E ++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P
Sbjct: 425 ARERENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAP 476
Query: 486 SVPLDELLADLDLKSD-DGEGDDSM 509
+ L E+L DL + D GE SM
Sbjct: 477 RISLAEMLEDLHISQDATGEEGASM 501
>gi|19923796|ref|NP_057022.2| 60S ribosomal export protein NMD3 [Homo sapiens]
gi|74731412|sp|Q96D46.1|NMD3_HUMAN RecName: Full=60S ribosomal export protein NMD3; Short=hNMD3
gi|15426434|gb|AAH13317.1| NMD3 homolog (S. cerevisiae) [Homo sapiens]
gi|190690621|gb|ACE87085.1| NMD3 homolog (S. cerevisiae) protein [synthetic construct]
gi|190691981|gb|ACE87765.1| NMD3 homolog (S. cerevisiae) protein [synthetic construct]
Length = 503
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|119599024|gb|EAW78618.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119599025|gb|EAW78619.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 503
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|395843852|ref|XP_003794686.1| PREDICTED: 60S ribosomal export protein NMD3 [Otolemur garnettii]
Length = 504
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/502 (46%), Positives = 335/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K V+F+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVDFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D + +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V + G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSLVQNLKRGAGAGMVSKKHTLGEVWVQKTSEMDTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRIPDVVLIKKSYDRS---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D+ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RDNMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE +M
Sbjct: 480 LAEMLEDLHISQDATGEAGAAM 501
>gi|410209362|gb|JAA01900.1| NMD3 homolog [Pan troglodytes]
gi|410266978|gb|JAA21455.1| NMD3 homolog [Pan troglodytes]
gi|410304762|gb|JAA30981.1| NMD3 homolog [Pan troglodytes]
Length = 503
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|291400106|ref|XP_002716402.1| PREDICTED: NMD3 homolog [Oryctolagus cuniculus]
Length = 503
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/502 (46%), Positives = 334/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCG 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V S+ + K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|4680653|gb|AAD27716.1|AF132941_1 CGI-07 protein [Homo sapiens]
Length = 503
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVIECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|397521152|ref|XP_003830666.1| PREDICTED: 60S ribosomal export protein NMD3 [Pan paniscus]
Length = 503
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRCRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|345796501|ref|XP_545261.3| PREDICTED: 60S ribosomal export protein NMD3 [Canis lupus
familiaris]
Length = 504
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TW+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVPCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+KR+K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKRIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+Y+ Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYIVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRHKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSTIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V S+ + K++L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDLKRSAGAGMISKKHILGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKK+Y+ KR + R+WKLK L
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKNYDRT---KRQRRRNWKLKELAR- 426
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 427 -DKENMDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE +SM
Sbjct: 480 LAEMLEDLHISQDATGEEGESM 501
>gi|332214638|ref|XP_003256441.1| PREDICTED: 60S ribosomal export protein NMD3 [Nomascus leucogenys]
Length = 503
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENID--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|301792240|ref|XP_002931087.1| PREDICTED: 60S ribosomal export protein NMD3-like [Ailuropoda
melanoleuca]
Length = 504
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/505 (46%), Positives = 335/505 (66%), Gaps = 20/505 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+T G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI
Sbjct: 10 RTPGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPATWI 69
Query: 72 KAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q
Sbjct: 70 QCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQV 129
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +RI
Sbjct: 130 FVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRI 188
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI P
Sbjct: 189 KEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRQKASQRLISQDIHSNTYNYKSTFSVEIVP 248
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC+++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL
Sbjct: 249 ICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLC 308
Query: 311 TSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
+QL E+IV++ VV S+ + K+ L + V + S+ + F RTHLGH
Sbjct: 309 HPKQLEEFIVMECSVVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGH 367
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
LLNPGD LG+DL + N ND ++K +P+ +LIKK+Y+ KR + R+WKLK L
Sbjct: 368 LLNPGDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKNYDRT---KRQRRRNWKLKEL 424
Query: 426 DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVP 485
D TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P
Sbjct: 425 AR--DRENMDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRDATI-PVE--SDTDEEGAP 476
Query: 486 SVPLDELLADLDLKSD-DGEGDDSM 509
+ L E+L DL + D GE +SM
Sbjct: 477 RISLAEMLEDLHISQDATGEEGESM 501
>gi|291231611|ref|XP_002735759.1| PREDICTED: NMD3 homolog [Saccoglossus kowalevskii]
Length = 507
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 237/502 (47%), Positives = 331/502 (65%), Gaps = 19/502 (3%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T G +LCC+CGI + N ANMCV+C+R++VDITEG+ K +I C C+ YLQPP +W+
Sbjct: 11 TQGRILCCQCGIAIESNPANMCVSCIRTQVDITEGIPKQGVIYFCKNCERYLQPPESWVV 70
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
LES+ELL+ C+K+LK LN+V LV+A FIWTEPHSKR+KVKL +QKEVL G +L+Q +V
Sbjct: 71 CTLESRELLSLCLKKLKGLNKVNLVDAGFIWTEPHSKRLKVKLTIQKEVLGGTVLQQVFV 130
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VE++ MC C RV+A D W A VQ+RQ TH++TFFYLEQLILKH A + I
Sbjct: 131 VEFMVHYQMCSDCHRVEAK-DFWKACVQVRQKTTHKKTFFYLEQLILKHRAHTSTVNIKA 189
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DF++ + A K VEF+ V P R + ++L+SHD +N +NYK T+SVEI PIC
Sbjct: 190 HHDGLDFYYEGKQDARKLVEFLQTVVPCRYQTSQRLISHDTHNNTYNYKTTYSVEIVPIC 249
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
+++++CLPPK+A SLGN+G + +C +V+N I ++DP +L+ + A YWR+ F SL
Sbjct: 250 KDNIVCLPPKLAQSLGNIGQICLCQRVSNLIHIIDPTSLQIADVTAPVYWRTPFNSLCEL 309
Query: 313 RQLVEYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
+ L EYIVL +E ++ + K++LAD VAR D G ND F RTHLGH
Sbjct: 310 KNLTEYIVLQIEPIAMKDMRHQKGQGAKSYKHILADVWVARSQDLGINDAQFHTRTHLGH 369
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
LLNPGD LG+D +AN ND DK K LP+ IL+KKSY+++ KR R+WKL+ +
Sbjct: 370 LLNPGDTVLGFDFLNANVNDQNFDKVKAERLPDVILVKKSYDKQ---KRKLRRNWKLRQM 426
Query: 426 DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVP 485
D D +KM ++Y EFL DLE++PE R ++++Y +++ S +D +D P
Sbjct: 427 SKHSD----ALDDDKMERDYSEFLEDLEDDPEYRQHVNIYMDRN--KSIPVESSDDDDAP 480
Query: 486 SVPLDELLADLDLKSD--DGEG 505
+ L E+L DL++ D GEG
Sbjct: 481 KISLQEMLEDLNISEDATGGEG 502
>gi|281208056|gb|EFA82234.1| 60S ribosomal export protein [Polysphondylium pallidum PN500]
Length = 519
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/498 (44%), Positives = 328/498 (65%), Gaps = 19/498 (3%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
FT +V +LCC CG+ + N +NMCV C+RS+VDITEG+ K +II C C+ YLQPP
Sbjct: 3 FTPVHSVSHILCCLCGVVIPSNPSNMCVNCIRSQVDITEGIPKQLIIQWCRGCNRYLQPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
W +LES+ELLT C+KR+K LN+V+LV+A ++WTEPHS+R+KVKL +QKEV + AIL
Sbjct: 63 NHWAMCELESRELLTLCIKRIKGLNQVKLVDAGWVWTEPHSRRLKVKLTIQKEVFSSAIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q ++VE+V Q C+ C + +A D W + VQLRQ V H+RTF +LEQ+ILKH+A ++
Sbjct: 123 QQVFIVEFVVQGQQCNKCQKFEAK-DTWNSVVQLRQKVDHKRTFLFLEQIILKHNAHSQT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+ I + G+DF+F N++ +KFVEF+ P++S+ +QL+S D ++NN NYK++FSVE
Sbjct: 182 LNIRERTDGLDFYFSNKNQGLKFVEFISSFVPLKSKRSEQLISTDEQNNNANYKHSFSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I P+ ++DL+CL PKV +LG +GP+V+ KV+N I ++DP TL+ + +W F+
Sbjct: 242 IVPLSKDDLVCLSPKVMHALGGMGPVVLIYKVSNLIHVIDPNTLQMGEISPLLFWNHPFR 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
+L T +QLVE +VLDV + K+ LAD QVAR SDFG+NDT F IRTHLGHL
Sbjct: 302 ALATHKQLVELVVLDVTLTGER----RGKFALADIQVARSSDFGRNDTTFFIRTHLGHLF 357
Query: 368 NPGDYALGYDLYSANNNDMELDKYKG-LVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
N GD ALG+D+ +AN ND E K +PE IL+KK+Y + R W K +D
Sbjct: 358 NAGDLALGFDVSTANMNDNEFANIKSKQTVPEIILVKKTY-------LNLQRHWHTKRID 410
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD------YQPSEMASVTD 480
ME + + + D E ++ E F +++E +PE+R I+LY+ + + + + +
Sbjct: 411 MEKGEPQKKNDIEAAERDQEMFYQEIENDPEMRSKINLYKKEGAAEIYAARKKQREELGE 470
Query: 481 GEDVPSVPLDELLADLDL 498
+D V L++LL ++ L
Sbjct: 471 SDDENEVDLEDLLDEMTL 488
>gi|402861061|ref|XP_003894927.1| PREDICTED: 60S ribosomal export protein NMD3 [Papio anubis]
Length = 503
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDIKRTAGAGMISKKHALGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|213511776|ref|NP_001133666.1| 60S ribosomal export protein NMD3 [Salmo salar]
gi|209154868|gb|ACI33666.1| 60S ribosomal export protein NMD3 [Salmo salar]
Length = 504
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/504 (46%), Positives = 344/504 (68%), Gaps = 19/504 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC CGIP+ PN ANMCV+CLR+ VDI+EG+ K V ++ C +C+ YLQPP +W++
Sbjct: 13 GNILCCTCGIPIHPNPANMCVSCLRTTVDISEGIPKQVNLNFCKQCERYLQPPASWVQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K+LK N+ +VRL++A F+WTEPHSKRIK+K+ +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKLKGNMTKVRLIDAGFLWTEPHSKRIKLKVTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
E+V Q MCD C RV+A D W + VQ+RQ +H++TF+YLEQLILKH A+ I ++
Sbjct: 133 EFVIQGQMCDDCHRVEAK-DFWNSVVQVRQKTSHKKTFYYLEQLILKHKLHQNALNIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
+GIDF++ + HA K V+F+ P RS+ ++L+SHD SN FNYK T+S+EI P+C+
Sbjct: 192 HEGIDFYYATKQHAQKMVDFLQCTVPCRSKTSQRLISHDIHSNTFNYKSTYSIEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL P++A SLGN+G + +C +VT++I L+DP TL+ +D YWR+ F SL++ R
Sbjct: 252 DNVVCLSPRLAQSLGNMGQVCVCARVTSTIHLIDPNTLQIAEVDGGTYWRNPFNSLVSPR 311
Query: 314 QLVEYIVLDVEVVSSE-----VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV+D +++ ++ + +K+ LA+ V + S+ + RTHLGHLLN
Sbjct: 312 QLEEFIVMDTDIIRNQKLGAGAGIRSNKHTLAEVWVQKTSEMDTAQQ-YHCRTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
GD G+D ++N ND L+K +P+ +LIKKSY KR K R+WKLK +D
Sbjct: 371 IGDLVQGFDFANSNVNDEFLNKMNPSHIPDVVLIKKSYNRS---KRVKRRNWKLKEMD-- 425
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D +G +++ ++Y++FL DLEE+ LR N++++R+ P E S TD E P +
Sbjct: 426 -KDREGMAPEDE--RQYQDFLEDLEEDEALRKNVNIFRDASKIPVE--SDTDDEGAPQIS 480
Query: 489 LDELLADLDLK-SDDGEGDDSMRE 511
L E+L DL L + GEG D + E
Sbjct: 481 LMEMLEDLSLTDATGGEGADMLTE 504
>gi|426195434|gb|EKV45364.1| hypothetical protein AGABI2DRAFT_208350 [Agaricus bisporus var.
bisporus H97]
Length = 574
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/491 (46%), Positives = 320/491 (65%), Gaps = 37/491 (7%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+C ACLR+ VDITEG+ K +++C C+ +L PP
Sbjct: 3 FVPAPAVHRVLCADCGTPIVPNSANLCAACLRNTVDITEGIPKLASVAYCRNCERFLNPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
W A+ ES ELL+ C+K+LK LN+VRL +A FIWTEPHSKR++V + +QKE L IL
Sbjct: 63 AAWTIARPESPELLSICLKKLKGLNKVRLTDARFIWTEPHSKRLRVAITIQKEALTNTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ++ +E++ Q C SC+R+ A + W A VQ+RQ V H+RTF YLEQLILKH+A
Sbjct: 123 EQTFEIEFLVQYGQCSSCARLAAK-NTWKAMVQVRQKVPHKRTFLYLEQLILKHNAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DF++ +R+HA+K VEF+ V PVRS+ +QL+S D S +YK+T+SVE
Sbjct: 182 ISVREVRDGLDFYYSHRNHAIKMVEFLTSVVPVRSKSSEQLLSTDTHSGTSDYKFTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I+PIC++DL+C+P K+A SLGN+ PL IC ++ NS +L+DP TL+ C + YWR F+
Sbjct: 242 IAPICKDDLVCMPLKLARSLGNIHPLTICARIGNSFSLIDPATLQTCDVSQALYWRQPFE 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF----------------- 350
SL + LVE+ VLD+E + + KY++ADAQVA S F
Sbjct: 302 SLSSVTDLVEFTVLDIE---PDYSKSKGKYLMADAQVALASAFRSSGGITEDVMMDYDTM 358
Query: 351 GKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKR 410
G+ +IF RTHLG +L PGD ALGY L ++N N E ++P+ IL+KK+Y +
Sbjct: 359 GQTSSIFHTRTHLGAILQPGDTALGYHLTNSNYNSTEFASLPSNLIPDIILVKKAYPNR- 417
Query: 411 LRKRSKPRSWKLKSLDMEVDDSKGRT-------------DQEKMNKEYEEFLRDLEENPE 457
RK+SK RSWKL+S+ E + +G T DQ+K++++YE FLRDLEE+PE
Sbjct: 418 -RKKSKSRSWKLRSIAKEPGE-EGETGSGRGVVGRLGGRDQKKVDEDYELFLRDLEEDPE 475
Query: 458 LRFNISLYRNK 468
+R ++LY+ K
Sbjct: 476 MRAGVNLYKAK 486
>gi|348534719|ref|XP_003454849.1| PREDICTED: 60S ribosomal export protein NMD3-like [Oreochromis
niloticus]
Length = 504
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/504 (46%), Positives = 343/504 (68%), Gaps = 19/504 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC CG+P+ PN ANMCVACLR++VDI+EG+ K V + C +C+ YLQPP TW++
Sbjct: 13 GNILCCTCGVPIPPNPANMCVACLRTQVDISEGIPKQVTVHFCKQCERYLQPPATWVQCA 72
Query: 75 LESKELLTFCVKRL-KNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K+L ++++VRL++A F+WTEPHSKRIK+KL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKLKSSMSKVRLIDAGFLWTEPHSKRIKMKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
E+V Q MCD C RV+A D W A VQ+RQ H++TF+YLEQLILKH + I ++
Sbjct: 133 EFVIQSQMCDDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTLNIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
+GIDF++G++ HA K V+F+ P RS+ ++L+SHD SN +NYK TFSVEI P+C+
Sbjct: 192 HEGIDFYYGSKQHAQKMVDFLQCTVPCRSKASQRLISHDIHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL P++A SLGN+G + +C++VT++I L+DP TL+ +D + YWR+ F L +
Sbjct: 252 DNVVCLSPRLAQSLGNMGQVCVCIRVTSTIHLIDPRTLQIAEVDGNTYWRNPFNGLFNPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV+D++++ + G+ K+ LA+ V + S+ + + RT LGHLLN
Sbjct: 312 QLEEFIVMDIDIIRDQKLGAGAGMRSNKHTLAEVWVQKTSEMNTSQQ-YHCRTFLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
GD LG+D ++N ND L+K +P+ +LIKKSY+ R R K R+WKL+ +M
Sbjct: 371 IGDLVLGFDFANSNINDEYLNKMNPHHVPDVVLIKKSYDRSR---RVKRRNWKLQ--EMA 425
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D TD E ++Y++FL DLEE+ LR N++++R+ P E S TD + P V
Sbjct: 426 RDREGMDTDDE---RQYQDFLEDLEEDEALRKNVNIFRDASKIPVE--SDTDDDGAPCVS 480
Query: 489 LDELLADLDLK-SDDGEGDDSMRE 511
L E+L +L L + GEG D M +
Sbjct: 481 LAEMLEELSLTDATGGEGADMMTD 504
>gi|197101775|ref|NP_001127311.1| 60S ribosomal export protein NMD3 [Pongo abelii]
gi|75056728|sp|Q5RC82.1|NMD3_PONAB RecName: Full=60S ribosomal export protein NMD3
gi|55727749|emb|CAH90625.1| hypothetical protein [Pongo abelii]
Length = 503
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL VQKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF++LEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYHLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|383408479|gb|AFH27453.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
Length = 503
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/502 (46%), Positives = 332/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ D +W + F SL R
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLVDPNTLQVADTDGSTFWSNPFNSLCHLR 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSTVRDIKRAAGAGMISKKHALGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|380785895|gb|AFE64823.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
gi|383408481|gb|AFH27454.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
gi|384941278|gb|AFI34244.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
Length = 503
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/502 (46%), Positives = 332/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSTVRDIKRAAGAGMISKKHALGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|296227669|ref|XP_002759470.1| PREDICTED: 60S ribosomal export protein NMD3 [Callithrix jacchus]
Length = 503
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/503 (46%), Positives = 332/503 (66%), Gaps = 21/503 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+ ++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLNKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQCQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADVDGSTFWNHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV+D +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMDCSIVRDIKRGAGAGMISKKHTLGEVWVQKTSELNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDETIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD--DGEGDDSM 509
L E+L DL + D GEG M
Sbjct: 480 LAEMLEDLHISQDATGGEGTSMM 502
>gi|355559900|gb|EHH16628.1| hypothetical protein EGK_11941 [Macaca mulatta]
Length = 529
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/500 (45%), Positives = 333/500 (66%), Gaps = 20/500 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSTVRDIKRAAGAGMISKKHALGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSDDGEGDDS 508
L E+L DL + S D G+++
Sbjct: 480 LAEMLEDLHI-SQDATGEEA 498
>gi|19526940|ref|NP_598548.1| 60S ribosomal export protein NMD3 [Mus musculus]
gi|81903129|sp|Q99L48.1|NMD3_MOUSE RecName: Full=60S ribosomal export protein NMD3
gi|13277951|gb|AAH03842.1| NMD3 homolog (S. cerevisiae) [Mus musculus]
gi|26353722|dbj|BAC40491.1| unnamed protein product [Mus musculus]
gi|74147592|dbj|BAE38680.1| unnamed protein product [Mus musculus]
gi|74208223|dbj|BAE26326.1| unnamed protein product [Mus musculus]
gi|148683546|gb|EDL15493.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 503
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/508 (45%), Positives = 336/508 (66%), Gaps = 20/508 (3%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
++ + G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP
Sbjct: 7 SIEHSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPA 66
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W++ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL
Sbjct: 67 SWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAIL 126
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+
Sbjct: 127 QQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNT 185
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+RI ++ G+DF++ ++ HA K VEF+ + P R + ++L+S D SN +NYK TFSVE
Sbjct: 186 LRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKSTFSVE 245
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC+++++CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + +W F
Sbjct: 246 IVPICKDNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFN 305
Query: 308 SLLTSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTH 362
SL +QL E+IV++ V S+ V K+ L + + + S+ + F RTH
Sbjct: 306 SLCHPKQLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNTDKQYFC-RTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKL
Sbjct: 365 LGHLLNPGDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKL 421
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L D TD E ++Y++FL DLEE+ +R ++++YR+ P E S TD E
Sbjct: 422 KELAR--DRENMDTDDE---RQYQDFLEDLEEDEAIRKHVNIYRDATI-PVE--SDTDDE 473
Query: 483 DVPSVPLDELLADLDLKSD-DGEGDDSM 509
P + L E+L DL + D GE SM
Sbjct: 474 GAPRISLAEMLEDLHISQDATGEEGASM 501
>gi|148683547|gb|EDL15494.1| NMD3 homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 559
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/508 (45%), Positives = 336/508 (66%), Gaps = 20/508 (3%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
++ + G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP
Sbjct: 63 SIEHSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPA 122
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W++ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL
Sbjct: 123 SWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAIL 182
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+
Sbjct: 183 QQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNT 241
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+RI ++ G+DF++ ++ HA K VEF+ + P R + ++L+S D SN +NYK TFSVE
Sbjct: 242 LRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKSTFSVE 301
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC+++++CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + +W F
Sbjct: 302 IVPICKDNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFN 361
Query: 308 SLLTSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTH 362
SL +QL E+IV++ V S+ V K+ L + + + S+ + F RTH
Sbjct: 362 SLCHPKQLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNTDKQYFC-RTH 420
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKL
Sbjct: 421 LGHLLNPGDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKL 477
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L D TD E ++Y++FL DLEE+ +R ++++YR+ P E S TD E
Sbjct: 478 KELAR--DRENMDTDDE---RQYQDFLEDLEEDEAIRKHVNIYRDATI-PVE--SDTDDE 529
Query: 483 DVPSVPLDELLADLDLKSD-DGEGDDSM 509
P + L E+L DL + D GE SM
Sbjct: 530 GAPRISLAEMLEDLHISQDATGEEGASM 557
>gi|354482257|ref|XP_003503315.1| PREDICTED: 60S ribosomal export protein NMD3 [Cricetulus griseus]
Length = 516
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/504 (45%), Positives = 332/504 (65%), Gaps = 30/504 (5%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP +W++ LES
Sbjct: 29 LCCECGVPISPNPANVCVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALES 88
Query: 78 KELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV
Sbjct: 89 RELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYV 148
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++ G
Sbjct: 149 VQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDG 207
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC++++
Sbjct: 208 LDFYYSSKQHAQKMVEFLQGTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNV 267
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + +W F SL +QL
Sbjct: 268 VCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQLE 327
Query: 317 EYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
E+IV++ +V S+ + K+ L + + + S+ + F RTHLGHLLNPGD
Sbjct: 328 EFIVMECSIVRDLKRSAGAGIISKKHTLGEVWIQKTSEMNTDKQYFC-RTHLGHLLNPGD 386
Query: 372 YALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL-----D 426
LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L D
Sbjct: 387 LVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARDRED 443
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPS 486
M+ DD ++Y++FL DLEE+ +R N+++YR+ P E S TD E P
Sbjct: 444 MDTDD----------ERQYQDFLEDLEEDEAIRKNVNIYRDSTV-PVE--SDTDDEGAPR 490
Query: 487 VPLDELLADLDLKSD-DGEGDDSM 509
+ L E+L DL + D GE SM
Sbjct: 491 ISLAEMLEDLHISQDATGEEGASM 514
>gi|351712585|gb|EHB15504.1| 60S ribosomal export protein NMD3, partial [Heterocephalus glaber]
Length = 497
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/496 (45%), Positives = 330/496 (66%), Gaps = 19/496 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
++G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TW+
Sbjct: 10 HSLGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWV 69
Query: 72 KAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ LESKELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q
Sbjct: 70 QCALESKELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQV 129
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +RI
Sbjct: 130 FVVDYVVQSQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGVHQNTLRI 188
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NY+ TFSVEI P
Sbjct: 189 KEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYRSTFSVEIVP 248
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC+++++CL PK+A SLGN+ + +C++++++I L+DP TL+ +D +W F SL
Sbjct: 249 ICKDNVVCLSPKLAQSLGNMNQICVCIRISSAIHLIDPNTLQVADIDGSTFWSHPFNSLC 308
Query: 311 TSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
+QL E+IV++ +V S+ V K+ L + V + S+ + F RTHLGH
Sbjct: 309 HPKQLEEFIVMECSIVRDLKRSAGAGVISKKHTLGEVWVQKTSEMDTDKQYFC-RTHLGH 367
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
LLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L
Sbjct: 368 LLNPGDLVLGFDLANCNLNDEHVNKMNSDKVPDVVLIKKSYDRT---KRQRRRNWKLKEL 424
Query: 426 DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVP 485
D TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P
Sbjct: 425 AR--DRENMDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAP 476
Query: 486 SVPLDELLADLDLKSD 501
+ L E+L DL + D
Sbjct: 477 RISLAEMLEDLHISQD 492
>gi|431915174|gb|ELK15861.1| 60S ribosomal export protein NMD3 [Pteropus alecto]
Length = 542
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/505 (45%), Positives = 336/505 (66%), Gaps = 20/505 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+T G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP WI
Sbjct: 48 RTPGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGMWI 107
Query: 72 KAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q
Sbjct: 108 QCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQV 167
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +RI
Sbjct: 168 FVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRI 226
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DF++ ++ HA K VEF+ P R + ++L+S D +SN +NYK TFS+EI P
Sbjct: 227 KEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIRSNTYNYKSTFSLEIVP 286
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC+++++CL PK+A SLGN+ + +C++VT++I L+DP T++ +D + +W F SL
Sbjct: 287 ICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTVQVADIDGNTFWSHPFNSLC 346
Query: 311 TSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
+QL E+IV++ +V S+ + K+ L + V + S+ + F RTHLGH
Sbjct: 347 HPKQLEEFIVMECSIVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGH 405
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
LLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L
Sbjct: 406 LLNPGDLVLGFDLANCNLNDEHVNKMNPDRVPDVVLIKKSYDRT---KRQRRRNWKLKEL 462
Query: 426 DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVP 485
D TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P
Sbjct: 463 AR--DRENMDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAP 514
Query: 486 SVPLDELLADLDLKSD-DGEGDDSM 509
+ L E+L DL + D GE +SM
Sbjct: 515 RISLAEMLEDLHISQDATGEEGESM 539
>gi|114590191|ref|XP_516854.2| PREDICTED: 60S ribosomal export protein NMD3 [Pan troglodytes]
gi|410333631|gb|JAA35762.1| NMD3 homolog [Pan troglodytes]
Length = 503
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/502 (46%), Positives = 332/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++ N AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISSNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|307202686|gb|EFN81992.1| 60S ribosomal export protein NMD3 [Harpegnathos saltator]
Length = 503
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/493 (46%), Positives = 318/493 (64%), Gaps = 22/493 (4%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG P+ PN ANMCV CLR+ VDITEG+ K + C C+ YLQPP WI A LE
Sbjct: 16 ILCCECGTPIEPNPANMCVGCLRTHVDITEGIPKQATLHFCKGCERYLQPPVEWIHAPLE 75
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
SKEL++ C+K+LK LNRV+LV+A F+WTEPHSKR+KVKL V E + G +L+Q +VVEY+
Sbjct: 76 SKELMSICLKKLKGLNRVKLVDASFVWTEPHSKRLKVKLTVHGEAIGGVVLQQVFVVEYI 135
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MCD C R +A D W A+VQ+RQ +++TFFYLEQLILKH A + + I + +G
Sbjct: 136 VNHQMCDDCHRAEAK-DYWRASVQVRQKAINKKTFFYLEQLILKHKAHEQTLGIKPIHEG 194
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ N + A K V+F+ V P R +H K+L+SHD SN +NYK+T+SVEI P+ ++ +
Sbjct: 195 LDFFYANEATARKMVDFLQTVIPCRYQHSKKLISHDIHSNIYNYKFTYSVEIVPVSKDSV 254
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLP K+ LG + P+ + K+TNS+ L+D + + + A YWR SFKS+ +QL
Sbjct: 255 VCLPRKLTQQLGGITPICLVYKITNSVHLIDVSSGQIAEVSATVYWRHSFKSICNPKQLT 314
Query: 317 EYIVLDVEVVSSE---VNVG----GSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EYIV+D+E++ E + G +K+V+AD + + S+ G ND RTHLGH+L P
Sbjct: 315 EYIVMDIELIKHEDKKIFPGQGSISNKHVIADVWLVKASELGINDNSTHARTHLGHVLKP 374
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD LGY L +N ND DK G +P+ IL+KK Y + +R + R WKLK + EV
Sbjct: 375 GDSVLGYTLKDSNINDANFDKLNGDTIPDIILVKKFYGYDKAARR-RARVWKLKHIADEV 433
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP- 488
N EY EFL +LEE+PELR NI+++R+ P + V E PS+P
Sbjct: 434 ------VSMSTENNEYNEFLDELEEDPELRQNINIFRD----PRKQIPVDTNEIDPSIPQ 483
Query: 489 --LDELLADLDLK 499
L+E+L DL L+
Sbjct: 484 ITLEEMLDDLVLE 496
>gi|388857502|emb|CCF48858.1| probable NMD3-nonsense-mediated mRNA decay protein [Ustilago
hordei]
Length = 551
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/476 (45%), Positives = 314/476 (65%), Gaps = 22/476 (4%)
Query: 11 PQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
P VLC CG P+APN AN+C++CLR+ VDITE + K ++ C C+ YL PP +W
Sbjct: 6 PAAQHMVLCADCGTPIAPNNANLCLSCLRNSVDITESVPKQATVNFCRNCERYLNPPNSW 65
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ A+LES+ELL C+K+LK LN+VRL++A FIWTEPHSKR++VKL VQKEV IL+Q
Sbjct: 66 VPARLESRELLAICLKKLKGLNKVRLIDAGFIWTEPHSKRLRVKLTVQKEVFTSTILQQI 125
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VE+V Q C C+R+ A + W A VQ+RQ V H+RTF YLEQLILKH+A + I
Sbjct: 126 FEVEFVVQYGQCPDCTRLAAK-NTWRAMVQVRQKVQHKRTFLYLEQLILKHNAHQNTVSI 184
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DFF+ RSHA+K VEF+ V P+R+ +Q++S D ++ NYK+T+SVEI+P
Sbjct: 185 NEKKDGLDFFYSQRSHAIKMVEFLNSVVPIRTTKSEQVISMDVHTSTTNYKFTYSVEIAP 244
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+CLPPK+A LGN+G LV+C KV+NS+ LDP +L+ + A++YWR +L
Sbjct: 245 ICKDDLVCLPPKMAKQLGNIGQLVLCHKVSNSLKFLDPISLQIADVPAEKYWRDPQPALA 304
Query: 311 TSRQLVEYIVLDVE----VVSSEVNVGGSKYVLADAQVA--RVSDFGKNDTIFSIRTHLG 364
T ++VE+++LD+E ++ V + ADAQV+ + FG+ D ++ RTHLG
Sbjct: 305 TIPEMVEFLILDIEPTGRYATNSHGVENRRLEEADAQVSPLNATSFGEADAVYHTRTHLG 364
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
+L PGD +GY L AN N + +P+ +L+KKSY E+ +KRSK R+WKLKS
Sbjct: 365 AILQPGDTVMGYHLRVANFNSATWETIPADRMPDVVLVKKSYPER--KKRSKNRTWKLKS 422
Query: 425 LDMEVDDSKGRT-------------DQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
+ E +D D +++ ++YE FLR+LEE+ E+R N++LYR+
Sbjct: 423 IAKEAEDPSAEGAVGRGAVGRRGGLDSQRVERDYELFLRELEEDEEMRANVNLYRD 478
>gi|115495387|ref|NP_001068888.1| 60S ribosomal export protein NMD3 [Bos taurus]
gi|122132352|sp|Q08DS5.1|NMD3_BOVIN RecName: Full=60S ribosomal export protein NMD3
gi|115305166|gb|AAI23589.1| NMD3 homolog (S. cerevisiae) [Bos taurus]
gi|296491130|tpg|DAA33203.1| TPA: 60S ribosomal export protein NMD3 [Bos taurus]
Length = 503
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/508 (45%), Positives = 338/508 (66%), Gaps = 21/508 (4%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
V T G +LCC CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP T
Sbjct: 8 VKHTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGT 67
Query: 70 WIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W++ LES++LL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+
Sbjct: 68 WVQCALESRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQ 127
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q +VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +
Sbjct: 128 QVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTL 186
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI
Sbjct: 187 RIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEI 246
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PIC+++++CL PK+A SLGN+ + +C++VT+ I L+DP TL+ +D + +W F S
Sbjct: 247 VPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNS 306
Query: 309 LLTSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
L +QL E+IV++ +V S+ + K+ L + V + S+ + F RTHL
Sbjct: 307 LCHPKQLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHL 365
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
GHLLNPGD LG+DL + N ND ++K K +P+ +LIKKSY+ R ++R +WKLK
Sbjct: 366 GHLLNPGDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRTRRQRRR---NWKLK 422
Query: 424 SLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
L + +++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E
Sbjct: 423 ELARDRENTD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEG 474
Query: 484 VPSVPLDELLADLDLKSD--DGEGDDSM 509
P + L E+L DL + D GEG+ M
Sbjct: 475 APRISLAEMLEDLHISQDATGGEGESMM 502
>gi|281344425|gb|EFB20009.1| hypothetical protein PANDA_021824 [Ailuropoda melanoleuca]
Length = 488
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/499 (46%), Positives = 331/499 (66%), Gaps = 20/499 (4%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI+ LES
Sbjct: 1 LCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPATWIQCALES 60
Query: 78 KELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV
Sbjct: 61 RELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYV 120
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +RI ++ G
Sbjct: 121 VQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDG 179
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC++++
Sbjct: 180 LDFYYSSKQHAQKMVEFLQCTVPCRQKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNV 239
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +QL
Sbjct: 240 VCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLE 299
Query: 317 EYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
E+IV++ VV S+ + K+ L + V + S+ + F RTHLGHLLNPGD
Sbjct: 300 EFIVMECSVVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLNPGD 358
Query: 372 YALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDD 431
LG+DL + N ND ++K +P+ +LIKK+Y+ KR + R+WKLK L D
Sbjct: 359 LVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKNYDRT---KRQRRRNWKLKELAR--DR 413
Query: 432 SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDE 491
TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P + L E
Sbjct: 414 ENMDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRDATI-PVE--SDTDEEGAPRISLAE 467
Query: 492 LLADLDLKSD-DGEGDDSM 509
+L DL + D GE +SM
Sbjct: 468 MLEDLHISQDATGEEGESM 486
>gi|409048051|gb|EKM57529.1| hypothetical protein PHACADRAFT_138716 [Phanerochaete carnosa
HHB-10118-sp]
Length = 554
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/551 (43%), Positives = 332/551 (60%), Gaps = 69/551 (12%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
FT + VLC CG P+ PN+AN+CVACLR+ VDITEG+ K +S C C+ +L PP
Sbjct: 3 FTPGPAIHKVLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQASVSFCRNCERFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W A+ ES+ELL C+K+LK LN+VRL +A FIWTEPHSKR++V L +QKEVL IL
Sbjct: 63 ASWALARPESQELLAICLKKLKGLNKVRLTDAHFIWTEPHSKRLRVSLTIQKEVLTATIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ + +EY+ Q C C+++ A + W A VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 123 EQIFEIEYLVQHGQCPDCAKLAAK-NTWKALVQVRQKVPHKRTFLFLEQLILKHGAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ +RSHA+K VEF+G V P+RS+ +QL+S D S+ N+KYT+SVE
Sbjct: 182 ISVKEVRDGLDFFYSSRSHAIKMVEFLGGVVPIRSKASEQLLSADTHSHTANFKYTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC++DL+C+P K+A + N+ PL +C +V N++ LLDP TL+ C + A YWR+ F+
Sbjct: 242 IIPICKDDLVCIPLKLAKQMANINPLTLCSRVGNTLHLLDPSTLQACEITAPIYWRAPFE 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF------GKND------- 354
SL + LVE+ VLD+E + K V ADAQVA F GK+D
Sbjct: 302 SLTSVTDLVEFTVLDIEPTGN----SRGKNVAADAQVALSGAFKSSHPHGKDDGMMDYEN 357
Query: 355 -----TIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEK 409
IF RTHLG +L PGD A+GY L ++N N + +P+ IL+KK+Y+ +
Sbjct: 358 SSLANQIFHTRTHLGGILQPGDIAMGYFLSNSNFNSDDFASLPSHRVPDVILVKKAYQNR 417
Query: 410 RLRKRSKPRSWKLKSLDMEVDDSKGRT-------------DQEKMNKEYEEFLRDLEENP 456
RK++K R WKL+S+ E + +G T DQ+K+ ++YE FLR+LEE+
Sbjct: 418 --RKKNKVRKWKLRSIAKEAGE-EGETGSGRGVVGRTGGRDQKKVEEDYELFLRELEEDE 474
Query: 457 ELRFNISLYRNKDYQPSEMASVTDGE------------------------------DVPS 486
E+R ++LYR KD QP + + G+ D P
Sbjct: 475 EMRGAVNLYRAKDDQPGAGSGLAGGKTRKKQQFDMEIDESAPVPPAADEEEEEDETDFPQ 534
Query: 487 VPLDELLADLD 497
V LDELL D D
Sbjct: 535 VKLDELLEDFD 545
>gi|392561454|gb|EIW54635.1| NMD3-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 554
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/501 (45%), Positives = 316/501 (63%), Gaps = 33/501 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+CVACLR+ VDITEG+ K +S+C C+ +L PP
Sbjct: 3 FVPAPAVLRVLCADCGTPIVPNSANLCVACLRNSVDITEGIPKQASVSYCRNCERFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W A ES+ELL C+K+LK LN+VRL A FIWTEPHSKR++V L +QKEVL IL
Sbjct: 63 TSWTIALPESQELLAICLKKLKGLNKVRLTEAHFIWTEPHSKRLRVSLTIQKEVLTATIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ + +EY+ Q C C+++ A + W A VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 123 EQVFEIEYLVQYGQCPDCTKLAAK-NTWKALVQVRQKVPHKRTFLFLEQLILKHGAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ RSHA K VEF+ V PVRS+ +QL+S D +N N+KYT+SVE
Sbjct: 182 ISVKEVRDGLDFFYAQRSHAQKMVEFLAGVVPVRSKASEQLLSTDTHTNTANFKYTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I P+C++DL+C+PPK+A N+ PL IC++V NS+ LLDP TL+ C + A YWR+ F+
Sbjct: 242 IIPVCKDDLVCIPPKLARQQSNISPLAICVRVGNSLHLLDPSTLQVCEVTAPVYWRTPFE 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKN-------------- 353
+L T LVE+ VLDVE K+VLADAQVA F +
Sbjct: 302 ALATVTDLVEFTVLDVEPSGQT----RGKWVLADAQVALSGAFRSHAAGEDGMDFESAMA 357
Query: 354 DTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRK 413
+ IF RTHLG +L PGD ALGY L +AN N + +P+ +L+KK+Y + RK
Sbjct: 358 EQIFHTRTHLGAILQPGDSALGYFLTNANFNSDDYAALPAHRIPDIVLVKKAYPNR--RK 415
Query: 414 RSKPRSWKLKSLDMEVDDSK------------GRTDQEKMNKEYEEFLRDLEENPELRFN 461
++KPR+W+L+S+ E + G DQ+K+ ++YE FLR+LEE+ E+R
Sbjct: 416 KNKPRAWRLRSIAKEAGEEGETSGARGVVGRMGGRDQKKVEEDYEIFLRELEEDEEMRGA 475
Query: 462 ISLYRNKDYQPSEMASVTDGE 482
++LYR K+ P A V+ G+
Sbjct: 476 VNLYRAKNDLPGAGAGVSGGK 496
>gi|432117229|gb|ELK37659.1| 60S ribosomal export protein NMD3 [Myotis davidii]
Length = 503
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/508 (45%), Positives = 333/508 (65%), Gaps = 20/508 (3%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
+ +T G +LCC+CG+ ++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP
Sbjct: 7 SAERTPGHILCCECGVVISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPG 66
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
TWI+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL VQKEV+NGAIL
Sbjct: 67 TWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAIL 126
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+
Sbjct: 127 QQVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNT 185
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFS+E
Sbjct: 186 LRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSME 245
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC+++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F
Sbjct: 246 IVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADVDGSTFWSHPFN 305
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTH 362
SL +QL E+IV++ +V G+ K+ L + V + S+ + F RTH
Sbjct: 306 SLCHPKQLEEFIVMECSIVRDLKRKAGAGMISKKHTLGEVWVQKTSEMDTDKQYFC-RTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKL
Sbjct: 365 LGHLLNPGDLVLGFDLANCNINDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKL 421
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L D TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E
Sbjct: 422 KELAR--DKENMDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDE 473
Query: 483 DVPSVPLDELLADLDLKSD-DGEGDDSM 509
P + L E+L DL + D GE SM
Sbjct: 474 GAPRISLAEMLEDLHISQDATGEEGASM 501
>gi|440912375|gb|ELR61947.1| 60S ribosomal export protein NMD3 [Bos grunniens mutus]
Length = 503
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/508 (45%), Positives = 338/508 (66%), Gaps = 21/508 (4%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
V T G +LCC CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP T
Sbjct: 8 VKHTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGT 67
Query: 70 WIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W++ LES++LL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+
Sbjct: 68 WVQCALESRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQ 127
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q +VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +
Sbjct: 128 QVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTL 186
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFS+EI
Sbjct: 187 RIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSLEI 246
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PIC+++++CL PK+A SLGN+ + +C++VT+ I L+DP TL+ +D + +W F S
Sbjct: 247 VPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNS 306
Query: 309 LLTSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
L +QL E+IV++ +V S+ + K+ L + V + S+ + F RTHL
Sbjct: 307 LCHPKQLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHL 365
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
GHLLNPGD LG+DL + N ND ++K K +P+ +LIKKSY+ R ++R +WKLK
Sbjct: 366 GHLLNPGDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRTRRQRRR---NWKLK 422
Query: 424 SLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
L + +++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E
Sbjct: 423 ELARDRENTD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEG 474
Query: 484 VPSVPLDELLADLDLKSD--DGEGDDSM 509
P + L E+L DL + D GEG+ M
Sbjct: 475 APRISLAEMLEDLHISQDATGGEGESMM 502
>gi|395325924|gb|EJF58339.1| NMD3-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 552
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 246/549 (44%), Positives = 330/549 (60%), Gaps = 66/549 (12%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+CVACLR+ VDITEG+ K +S C C+ +L PP
Sbjct: 3 FVPAPAVHRVLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQASVSFCRNCERFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W+ A+ ES+ELL C+K+LK LN+VRL A FIWTEPHSKR++V L +QKEVL IL
Sbjct: 63 SSWVIARPESQELLAICLKKLKGLNKVRLTEAHFIWTEPHSKRLRVSLTIQKEVLTATIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ + +EY+ Q C C+++ A + W A VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 123 EQVFEIEYLVQYGQCPDCTKLAAK-NTWKALVQVRQKVPHKRTFLFLEQLILKHGAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ +RSHA K VEF+ V PVRS+ +QL+S D +N N+KYT+SVE
Sbjct: 182 ISVKEVRDGLDFFYSSRSHAQKMVEFLSGVVPVRSKASEQLLSADTHTNTANFKYTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I+PIC++DL+C+PPK+A SL N+ PL +C++V NS+ L+DP TL+ + A YWR+ F+
Sbjct: 242 ITPICKDDLVCVPPKLARSLANISPLTLCVRVGNSLHLMDPATLQSAEITAPIYWRTPFE 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF----------------- 350
SL + LVE+ VLDVE S G K+VLADAQVA F
Sbjct: 302 SLASVTDLVEFTVLDVE--PSGATRG--KWVLADAQVALSGAFRSHGAAGAGEDDTMDYE 357
Query: 351 GKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKR 410
G D IF RTHLG +L PGD A+GY L +AN N + +P+ +L+KK+Y +
Sbjct: 358 GGGDQIFHTRTHLGGILQPGDSAMGYFLTNANFNSDDFAALLSHRVPDVVLVKKAYPNR- 416
Query: 411 LRKRSKPRSWKLKSL------------DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPEL 458
RK++KPR WKL+S+ V G DQ+K+ ++YE FLR+LEE+ E+
Sbjct: 417 -RKKNKPRGWKLRSMAKEEGEEGETGGGRGVVGRMGGRDQKKVEEDYELFLRELEEDEEM 475
Query: 459 RFNISLYRNK---------------------DYQPSEMASV------TDGE---DVPSVP 488
R ++LYR + D E AS TD E D P V
Sbjct: 476 RGAVNLYRAQKPGAGSGLAGGKTRRKGQGQFDMDVDEHASAPDAGTETDAEEEPDFPQVK 535
Query: 489 LDELLADLD 497
LDELL D D
Sbjct: 536 LDELLEDFD 544
>gi|443897615|dbj|GAC74955.1| NMD protein affecting ribosome stability and mRNA decay [Pseudozyma
antarctica T-34]
Length = 548
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/540 (42%), Positives = 333/540 (61%), Gaps = 56/540 (10%)
Query: 11 PQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
P VLC CG P+ PN AN+C++CLR+ VDITE + K ++ C C+ YL PP +W
Sbjct: 6 PAAQHMVLCADCGTPITPNNANLCLSCLRNSVDITESVPKQATVNFCRNCERYLNPPNSW 65
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ A+LES+ELL C+K+LK LN+VRL++A FIWTEPHSKR++VKL VQKEV IL+Q
Sbjct: 66 VPARLESRELLAICLKKLKGLNKVRLIDAGFIWTEPHSKRLRVKLTVQKEVFTSTILQQI 125
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VE+V Q C C+R+ A + W A VQ+RQ V H+RTF YLEQLILKH+A + I
Sbjct: 126 FEVEFVVQYGQCPDCTRLAAK-NTWRAMVQVRQKVQHKRTFLYLEQLILKHNAHQNTVSI 184
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DFF+ RSHA+K VEF+ V P+++ +Q++S D ++ NYK+T+SVEI+P
Sbjct: 185 NEKKDGLDFFYTQRSHAIKMVEFLNSVVPIKTTKSEQVISMDVHTSTTNYKFTYSVEIAP 244
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
+C++DL+C+PP++A LGN+G LV+C KVTNS+ +DP +L+ + A++YWR +L
Sbjct: 245 VCKDDLVCMPPRMAKQLGNIGQLVLCNKVTNSLRFIDPISLQIAEVPAEKYWRDPLPALA 304
Query: 311 TSRQLVEYIVLDVE----VVSSEVNVGGSKYVLADAQVA--RVSDFGKNDTIFSIRTHLG 364
T +++E++VLD+E ++ V + ADAQV+ + FG+ D ++ RTHLG
Sbjct: 305 TIPEMIEFLVLDIEPTGRYATNSHGVQNRRLEEADAQVSPLNAASFGEADAVYHTRTHLG 364
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
+L PGD +GY L AN N E D LP+ +L+KKSY E+ +KRSK R WKLKS
Sbjct: 365 AILQPGDTVMGYHLRVANFNSAEWDTLPADRLPDVVLVKKSYPER--KKRSKNRMWKLKS 422
Query: 425 LDMEVDDSKGRT-------------DQEKMNKEYEEFLRDLEENPELRFNISLYRN---- 467
+ E +D D +++ ++YE FLR+LEE+ E+R ++LYR+
Sbjct: 423 MAKEAEDPATEGAVGRGAVGRRGGLDSQRVERDYELFLRELEEDDEMRQTVNLYRDTKKE 482
Query: 468 -------------KDYQPSEMAS-----------VTDGE------DVPSVPLDELLADLD 497
K + + +A+ TDGE D P V +DELL DL+
Sbjct: 483 EEKRLRKERAAQIKAEREAALANGGMEEDGDDGMTTDGESEWGDDDAPRVGMDELLDDLE 542
>gi|294660124|ref|XP_462561.2| 60S ribosomal export protein NMD3 [Debaryomyces hansenii CBS767]
gi|199434479|emb|CAG91072.2| DEHA2G23496p [Debaryomyces hansenii CBS767]
Length = 517
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/499 (46%), Positives = 330/499 (66%), Gaps = 20/499 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q V +VLCC CG+PM + MC C++ VDITEG+ + +S C C+ +LQPP+ W
Sbjct: 15 QPVATVLCCNCGVPMDGSSGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPQHW 74
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
IKA+LES+ELL C++RLK LN+VRL++A FIWTEPHS+RI+VKL VQ E ++ I++Q+
Sbjct: 75 IKAELESRELLALCLRRLKGLNKVRLIDASFIWTEPHSRRIRVKLTVQGEAMSNTIVQQT 134
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH+A + I
Sbjct: 135 FEVEYVVVAMQCPDCAK-SYTANTWRATVQIRQKVPHKRTFLYLEQLILKHNAHMDTVSI 193
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DFF+G ++HAVK ++F+ VAP++S+ ++LVS D S + +YK+++SVEI+P
Sbjct: 194 KESRDGLDFFYGQKNHAVKMLDFLSAVAPIKSKKSEELVSTDIHSASSSYKFSYSVEIAP 253
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
+CR+DL+ LP K+A SLGN+ LV+C K++NSI DP +L+ L+A YWRS F SLL
Sbjct: 254 VCRDDLVVLPKKMANSLGNISRLVLCSKISNSIQFFDPASLQSADLNAPVYWRSPFPSLL 313
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
+ +L+E+IVLDVE ++ G KYVLAD V+R SDFG ND F IR+HLG +L+PG
Sbjct: 314 NATELIEFIVLDVEPTG---DIRG-KYVLADITVSRASDFGSNDNSFYIRSHLGAILHPG 369
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D LGY L ++N N D +P+ IL+KK Y K ++SK R WKLK + E +
Sbjct: 370 DSCLGYYLANSNLNSDLFDTLDTDNIPDVILVKKHYARK--SRKSKNRKWKLKRMAKEHN 427
Query: 431 D-------SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA-----SV 478
D + + +QE+ ++YE FL+ LEE+ ELR I+LY+ D Q + +
Sbjct: 428 DIVANDDSRQAKQEQERAERDYELFLQQLEEDDELRQTINLYKTADDQYPKHSETDMEDE 487
Query: 479 TDGEDVPSVPLDELLADLD 497
D ED P + +DELL +LD
Sbjct: 488 DDDEDAPQIGIDELLDELD 506
>gi|47224987|emb|CAF97402.1| unnamed protein product [Tetraodon nigroviridis]
Length = 513
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/510 (45%), Positives = 342/510 (67%), Gaps = 27/510 (5%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC CG+P+ PN ANMCVACLR++VDI+EG+ K V + C +C+ YLQPP TW++
Sbjct: 13 GNILCCTCGVPIPPNPANMCVACLRTQVDISEGIPKQVTVHFCKQCERYLQPPATWVQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKE---------VLNG 124
LES+ELL+ C+K++K+ + +VRL++A F+WTEPHSKRIK+K+ +QKE VLNG
Sbjct: 73 LESRELLSLCLKKIKSSMTKVRLIDAGFLWTEPHSKRIKMKVTIQKEGILMTVSLQVLNG 132
Query: 125 AILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAA 184
AIL+Q +VVE+V Q+ MCD C RV+A D W A VQ+RQ +H++TF+YLEQLILKH
Sbjct: 133 AILQQVFVVEFVVQNQMCDDCHRVEAK-DFWKAVVQVRQKTSHKKTFYYLEQLILKHKLH 191
Query: 185 ARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTF 244
+ A+ I ++ GIDF++G + HA K V+F+ P RS+ ++L+SHD SN +NYK TF
Sbjct: 192 SNALNIKEIHDGIDFYYGLKQHAQKMVDFLQCTVPCRSKASQRLISHDIHSNTYNYKSTF 251
Query: 245 SVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRS 304
SVEI P+C+++++CL P++A SLGN+G + +C++VT++I L+DP TL+ +D + YWR+
Sbjct: 252 SVEIVPVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSTIHLIDPATLQIAEVDGNTYWRN 311
Query: 305 SFKSLLTSRQLVEYIVLDVEVVSSEVNVGG-----SKYVLADAQVARVSDFGKNDTIFSI 359
F SL RQL E+IV+D++++ + G S++ LA+ V + S+ + +
Sbjct: 312 PFNSLCNPRQLEEFIVMDIDIIRDQKLGAGAGTRSSRHTLAEVWVQKTSEMDTSQQ-YHC 370
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
RT LGHLLN GD LG+D ++N ND L+K +P+ +LIKK Y+ R R K R+
Sbjct: 371 RTFLGHLLNIGDLVLGFDFANSNINDEHLNKMNPHHIPDVVLIKKGYDRAR---RVKRRN 427
Query: 420 WKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT 479
WKL+ +M D TD E ++Y++FL DLEE+ LR N++++R+ P E S T
Sbjct: 428 WKLQ--EMARDREGMDTDDE---RQYQDFLEDLEEDEALRKNVNIFRDASKIPVE--SDT 480
Query: 480 DGEDVPSVPLDELLADLDLKSDDGEGDDSM 509
D + P + L E+L +L L GE M
Sbjct: 481 DDDGAPQISLAEMLEELSLTDATGEEGADM 510
>gi|170108838|ref|XP_001885627.1| 60S ribosomal export protein NMD3 [Laccaria bicolor S238N-H82]
gi|164639503|gb|EDR03774.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 558
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/485 (45%), Positives = 315/485 (64%), Gaps = 23/485 (4%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
FT V +LC CG P+ PN AN+CV+CLR+ VDITEG+ K +S C C+ +L PP
Sbjct: 3 FTPGPAVHQILCADCGTPIVPNTANLCVSCLRNTVDITEGIPKQASVSFCRNCERFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+ W AQ ES+ELL+ C+K+LK LN+VRL +A FIWTEPHSKR++V + +QKEVL IL
Sbjct: 63 QAWALAQPESRELLSICLKKLKGLNKVRLTDAHFIWTEPHSKRLRVAMTIQKEVLTNTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ++ +EY+ Q C C+++ A + W A VQ+RQ V H+RTF YLEQLILKH+A
Sbjct: 123 EQTFEIEYLVQHGQCPDCAKLAAK-NTWKALVQVRQKVHHKRTFLYLEQLILKHNAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ +RSHA+K VEF+G V P+RS+ +QL+S D +N N+KYT+SVE
Sbjct: 182 ISVKEVRDGLDFFYSSRSHALKMVEFLGSVVPIRSKASEQLLSSDTHTNTANFKYTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC++DL+C+P K A L N+ PL +C++V NSI LLDP TL+ C + + YWR+ F
Sbjct: 242 IVPICKDDLVCIPLKQARQLSNISPLTVCVRVGNSIQLLDPATLQSCDIPSQVYWRTPFD 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQ------VARVSDFGKNDTIFSIRT 361
SL + LVE+ VLD+E ++ G K+++AD Q + D G + I+ RT
Sbjct: 302 SLASVTDLVEFTVLDIEPDHTKKTKG--KHIMADVQADEDDGLMDYEDQGLTNQIYHTRT 359
Query: 362 HLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWK 421
HLG +L PGD LGY L +AN N + +P+ IL+KK+Y + RK++K R WK
Sbjct: 360 HLGAILQPGDAVLGYHLTNANYNSDDFASLPVGRIPDIILVKKTYPNR--RKKNKARKWK 417
Query: 422 LKSLDMEVDDSK------------GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD 469
L+S+ E + G D +K+ ++YE FLRDLEE+PE+R ++LY+ +
Sbjct: 418 LRSIAKEAGEEGETSGARGVVGRMGGRDHKKVEEDYELFLRDLEEDPEMRQGVNLYKAPE 477
Query: 470 YQPSE 474
+ +E
Sbjct: 478 VKMAE 482
>gi|432890080|ref|XP_004075417.1| PREDICTED: 60S ribosomal export protein NMD3-like [Oryzias latipes]
Length = 504
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/504 (46%), Positives = 341/504 (67%), Gaps = 19/504 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC CG+P+ PN ANMCVACLR++VDI+EG+ K V + C +C+ YLQPP TW++
Sbjct: 13 GNILCCTCGVPIPPNPANMCVACLRTQVDISEGIPKQVTVHFCKQCERYLQPPGTWMQCA 72
Query: 75 LESKELLTFCVKRL-KNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K+L ++ RVRL++A F+WTEPHSKRIK+KL VQKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKLKSSMTRVRLIDAGFLWTEPHSKRIKMKLTVQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
E+V Q MCD C RV+A D W A VQ+RQ H++TF+YLEQLILKH A+ I ++
Sbjct: 133 EFVIQSQMCDDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHLNALNIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
+GIDF++G++ HA K V+F+ P R + ++L+SHD SN +NYK TFSVEI P+C+
Sbjct: 192 HEGIDFYYGSKQHAQKMVDFLQCTVPCRCKTSQRLISHDIHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL P++A SLGN+G + +C++VT++I L+DP TL+ +D + YWR F SL R
Sbjct: 252 DNVVCLSPRLAQSLGNMGQVCVCVRVTSTIHLIDPRTLQIAEVDGNTYWRYPFNSLCNPR 311
Query: 314 QLVEYIVLDVEVVSSE-----VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV+D++++ + V +K+ LA+ V + S+ + + RT LGHLLN
Sbjct: 312 QLEEFIVMDMDIIRDQKLGAGAGVRSNKHTLAEVWVQKTSEMDTSQQ-YHCRTFLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
GD LGYD ++N ND L+K +P+ +LIKKSY+ R +R +WKL+ +M
Sbjct: 371 IGDLVLGYDFANSNINDEFLNKMNPQHVPDVVLIKKSYDRSRRVRRR---NWKLQ--EMS 425
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D TD E ++Y++FL DLEE+ LR N+++YR+ P E S TD + P +
Sbjct: 426 RDREGTDTDDE---RQYQDFLEDLEEDEALRRNVNIYRDVAKIPVE--SDTDDDGAPRIS 480
Query: 489 LDELLADLDLK-SDDGEGDDSMRE 511
L E+L +L L + GEGD M +
Sbjct: 481 LVEMLEELSLSDATGGEGDGMMTD 504
>gi|330790753|ref|XP_003283460.1| hypothetical protein DICPUDRAFT_147142 [Dictyostelium purpureum]
gi|325086570|gb|EGC39957.1| hypothetical protein DICPUDRAFT_147142 [Dictyostelium purpureum]
Length = 518
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/491 (45%), Positives = 329/491 (67%), Gaps = 18/491 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC CG+ + N +NMCV C++S+VDIT+G+ K + I C CD YLQPP W A LE
Sbjct: 4 ILCCMCGVLIPANPSNMCVDCIKSQVDITDGIPKQLTIQWCRGCDRYLQPPNHWAIADLE 63
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELLT C+KR+K LN+V+LV+A ++WTEPHSKR+KVKL +QKEV AIL+Q ++VE+V
Sbjct: 64 SRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSAILQQIFIVEFV 123
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q CD C + +A D W + VQLRQ V H+RTF ++EQLILKH+A ++ + I + G
Sbjct: 124 VQGQQCDKCQKFEAK-DTWNSVVQLRQKVDHKRTFLFIEQLILKHNAHSQTLNIKEKPDG 182
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFFF NR+HA+KFV+F+ + PV+++ +QL+S D ++N NYK+TFSVEI P+ ++D+
Sbjct: 183 LDFFFSNRNHAMKFVDFISCITPVKTKKSEQLISSDEQNNAANYKFTFSVEIVPLSKDDI 242
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLPPK+A LGN+GPLV+ KV+N I +DP TL+ + A +W S F++L + +QLV
Sbjct: 243 VCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLQTGEISALTFWNSPFRALSSYKQLV 302
Query: 317 EYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGY 376
E+ +LDV + ++ LAD Q+ R DFG ND + IR+HLG++LNPGD ALGY
Sbjct: 303 EFTILDVNLTGE----TRGRFALADIQLMRSVDFGANDNMHDIRSHLGNILNPGDLALGY 358
Query: 377 DLYSANNNDMELDKY-KGLVLPETILIKKSYEEKR-LRKRSKPRSWKLKSLDMEVDDSKG 434
D+ ++ ND +L K LP+ +L+KK+Y K R + R + K ++ E ++
Sbjct: 359 DVSTSIYNDSDLIGLKKNKYLPDFVLVKKTYPGKNDFRFK---RHYYYKQIEKEGIENPK 415
Query: 435 RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDY------QPSEMASVTDGEDV--PS 486
+ D E+M ++ E+FL ++EE+PE+R I++Y+ D + +M + ED
Sbjct: 416 KFDIERMERDKEDFLNEIEEDPEMRSKINIYKAPDAAQILKERIKKMEELGMDEDAIKAQ 475
Query: 487 VPLDELLADLD 497
+ +DELL + D
Sbjct: 476 LSMDELLDEFD 486
>gi|390598763|gb|EIN08160.1| NMD3-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 571
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/530 (44%), Positives = 321/530 (60%), Gaps = 41/530 (7%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+CVACLR+ VDITEG+ K ++ C C+ + PP
Sbjct: 3 FVPGPAVHRVLCADCGTPIVPNSANLCVACLRNSVDITEGIPKQSSLTFCRNCERFSSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
WI AQ ES+ELL C++R+K LN+VRL +A FIWTEPHS+R++V L +QKEVL IL
Sbjct: 63 NAWIIAQPESQELLALCLRRIKGLNKVRLTDAHFIWTEPHSRRLRVSLTIQKEVLTATIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ + +EY+ Q+ C C+R+ A + W A VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 123 EQIFEIEYLVQNAQCPDCARLAAK-NTWKAVVQVRQKVPHKRTFLFLEQLILKHGAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + + G+DFF+ RSHA+K EF+ V PVRS+ +QL+S D SN NYK+T+SVE
Sbjct: 182 ISVKETRDGLDFFYSQRSHAIKMTEFLTSVVPVRSKSSEQLISKDTHSNTANYKFTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I+P+C++DL+CLPPK+A L N+ PLV+C +V NS+ L DP TL L A YWR+ F
Sbjct: 242 IAPVCKDDLVCLPPKLARQLANISPLVLCTRVGNSLHLADPQTLAVSELAAPIYWRTPFD 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF----------------- 350
SL LVE+ VLDVE S G K+VLADAQVA F
Sbjct: 302 SLAGVTDLVEFTVLDVE--PSGPTRG--KWVLADAQVALAGAFRSHAEDADEDAMALDDD 357
Query: 351 -----GKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKS 405
G+N IF RTHLG +L PGD ALGY L AN N + +P+ +L+KK+
Sbjct: 358 HELVAGQNQ-IFHTRTHLGAILQPGDTALGYWLSHANFNSDDFSALPADRIPDVVLVKKA 416
Query: 406 YEEKRLRKRSKPRSWKLKSLDMEVDDSK----------GRTDQEKMNKEYEEFLRDLEEN 455
Y + RK+SK R+W L+S+ E D G DQ K++++YE FLR+LEE+
Sbjct: 417 YPNR--RKKSKARTWTLRSMAKEAADEAQDGRGVVGRLGGRDQRKVDEDYELFLRELEED 474
Query: 456 PELRFNISLYRNKDYQPSEMAS-VTDGEDVPSVPLDELLADLDLKSDDGE 504
PE+R ++LY+ + Q S + G+ V LD ++ +S D +
Sbjct: 475 PEMRGAVNLYKARGPQKINAGSGMAGGKTRRKVKLDPSAGQMETESADAQ 524
>gi|164658237|ref|XP_001730244.1| hypothetical protein MGL_2626 [Malassezia globosa CBS 7966]
gi|159104139|gb|EDP43030.1| hypothetical protein MGL_2626 [Malassezia globosa CBS 7966]
Length = 561
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/555 (43%), Positives = 337/555 (60%), Gaps = 72/555 (12%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
+ PQ + VLC CGIP+ PN AN CV CLR+ +DITE + + I+ C C+ YL PP
Sbjct: 6 SAPQRM--VLCADCGIPIEPNNANRCVNCLRNSIDITESIPRQATINFCRNCERYLNPPN 63
Query: 69 TWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
TW+ AQLES+ELL C+K+L+ L VRLV+A F+WTEPHSKR++VKL VQKEV ILE
Sbjct: 64 TWVIAQLESRELLAICLKKLRGLKSVRLVDANFVWTEPHSKRLRVKLTVQKEVYTSTILE 123
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
+ + VE + Q C C+R+ A + W AAVQ+RQ V H+RTF YLEQLILK++A +
Sbjct: 124 RCFEVEILVQYGQCPDCTRLAAK-NMWKAAVQVRQKVAHKRTFLYLEQLILKYNAHRETV 182
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
+ + G+DFF+ R+HA++ EF+ V PVR +QL+S D ++ NYK+T+SVEI
Sbjct: 183 SVQEKKDGLDFFYVQRAHAIRMCEFLASVVPVRMNKSEQLISMDVHTSQSNYKFTYSVEI 242
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
P+C++DLICLP VA SLGN+G V+ +++N I L+DP TL+ L A++YWR F +
Sbjct: 243 VPLCKDDLICLPLHVARSLGNIGQFVLPYRISNVIKLIDPVTLQMADLTAEKYWRDPFPA 302
Query: 309 LLTSRQLVEYIVLDVEVVSSEVN----VGGSKYVLADAQVA--RVSDFGKNDTIFSIRTH 362
L + ++VE++VLD+E + + SK++ ADAQV+ S FG++D ++ +RTH
Sbjct: 303 LCSIPEMVEFLVLDIETTGTIAHGPHGQSMSKFMAADAQVSPLHASTFGESDAVYHVRTH 362
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGH+LNPGD +GY L +AN N E D P+ +L+KKSY E RKR R+WKL
Sbjct: 363 LGHILNPGDTVMGYYLATANFNSDEWDAIPEERRPDVVLVKKSYPE---RKRRSKRNWKL 419
Query: 423 KSLDMEVDD-SKGR-------------TDQEKMNKEYEEFLRDLEENPELRFNISLYRNK 468
KS+ E +D S G D +++ ++YE+FLRDLEE+ E+R N+++Y++K
Sbjct: 420 KSIAKEAEDPSAGEHVVGRGALGRRGGLDSQRVERDYEQFLRDLEEDEEMRANVNMYKDK 479
Query: 469 ----------------------------DYQP-----SEMASVTDG-------------E 482
D QP S M S+ DG
Sbjct: 480 ERIARDEERRRRRETRYRDPQAMEDDEDDQQPPRDSSSAMDSMDDGGATTDNDSEYGSDS 539
Query: 483 DVPSVPLDELLADLD 497
++P V LDELL D+D
Sbjct: 540 ELPRVQLDELLDDMD 554
>gi|71019875|ref|XP_760168.1| hypothetical protein UM04021.1 [Ustilago maydis 521]
gi|46099885|gb|EAK85118.1| hypothetical protein UM04021.1 [Ustilago maydis 521]
Length = 550
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/525 (43%), Positives = 329/525 (62%), Gaps = 29/525 (5%)
Query: 11 PQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
P VLC CG P+APN AN+C++CLR+ VDITE + K ++ C C+ YL PP +W
Sbjct: 6 PAAQHMVLCADCGTPIAPNNANLCLSCLRNSVDITESVPKQATVNFCRNCERYLNPPNSW 65
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ A+LES+ELL C+K+LK LN+VRL++A FIWTEPHSKR++VKL VQKEV IL+Q
Sbjct: 66 VPARLESRELLAICLKKLKGLNKVRLIDAGFIWTEPHSKRLRVKLTVQKEVFTSTILQQY 125
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VE+V Q C C+R+ A + W A VQ+RQ V H+RTF YLEQLILKH+A + I
Sbjct: 126 FEVEFVVQYGQCPDCTRLAAK-NTWRAMVQVRQKVQHKRTFLYLEQLILKHNAHQNTVSI 184
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DFF+ R+HA+K VEF+ V P+++ +Q++S D ++ NYK+T+SVEI+P
Sbjct: 185 NEKKDGLDFFYTQRAHAIKMVEFLNSVVPIKTTKSEQVISMDVHTSTTNYKFTYSVEIAP 244
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+CLP K+A LGN+G LV+C KVTNS+ +DP +L+ + A++YWR +L
Sbjct: 245 ICKDDLVCLPLKMAKQLGNIGQLVLCHKVTNSLRFIDPISLQIAEVPAEKYWRDPQPALA 304
Query: 311 TSRQLVEYIVLDVE----VVSSEVNVGGSKYVLADAQVA--RVSDFGKNDTIFSIRTHLG 364
T ++VE++VLD+E ++ V + ADAQV+ + FG+ D ++ RTHLG
Sbjct: 305 TIPEMVEFLVLDIEPTGRYATNTHGVQNRRLEEADAQVSPLNAASFGEADAVYHTRTHLG 364
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
+L PGD +GY L AN N D +P+ +L+KKSY E+ +KRSK R WKLKS
Sbjct: 365 AILQPGDTVMGYYLRIANFNSATWDTIPADRMPDVVLVKKSYPER--KKRSKNRMWKLKS 422
Query: 425 LDMEVDDSKGRT-------------DQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ 471
+ E +D+ D +++ ++YE FLR+LEE+ E+R ++LYR+ +
Sbjct: 423 MAKEAEDATTEGAVGRGAVGRRGGLDSQRVERDYELFLRELEEDEEMRGTVNLYRDTKKE 482
Query: 472 PS-----EMASVTDGEDVPSVPLDELLADLDLKSDDGEGDDSMRE 511
E A+ E ++ +D + D D DDG D E
Sbjct: 483 EEKRLRKERAAQIKAERETALAMDGVEQDADF--DDGMTTDGESE 525
>gi|452820451|gb|EME27493.1| nonsense-mediated mRNA decay protein 3 [Galdieria sulphuraria]
Length = 484
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/458 (48%), Positives = 298/458 (65%), Gaps = 12/458 (2%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
V T+ ++LCC CG+P++PN +NMCV C+RS VDITE + K + + C C Y PP
Sbjct: 17 VTHTLPTILCCTCGVPISPNPSNMCVNCIRSRVDITETIPKQITLYFCKFCSKYHVPPSN 76
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W+ + ESKELL CV R++ LN++ LV+A FIWTEPHS+RIKVKL VQKEV N IL+Q
Sbjct: 77 WVYCEPESKELLALCVARIRGLNKLHLVDANFIWTEPHSRRIKVKLTVQKEVFNHTILQQ 136
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S++VEY C C A D W A VQ+RQ H++TF++LEQLILKH+A +
Sbjct: 137 SFIVEYCVDYQQCYECRAKSAKMDPWEAVVQVRQRADHKKTFYFLEQLILKHNAHGNTLS 196
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
+ + G+DF+F N+S A+KFV+F+ V PVR ++ LVSHDP + + YKY+FS E+
Sbjct: 197 LKTLRDGLDFYFPNKSAALKFVDFLHHVVPVRMKNSDHLVSHDPHNTTYKYKYSFSAELP 256
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
P+CR+DL+CLP KV+ SLG LGPLV+ KV+ ++ +DP TL+ L QYW+ F SL
Sbjct: 257 PVCRDDLVCLPKKVSTSLGGLGPLVLVSKVSQNLCFIDPLTLQTGELSGYQYWKYPFLSL 316
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
LTSR+LVE+ VLD E+ KY + D V+R SD G D F IR+H+ L
Sbjct: 317 LTSRRLVEFTVLDCELTGE----SQKKYCMGDVTVSRSSDLGITDRQFYIRSHVAKFLKA 372
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD LGYDL SAN ND LD+Y+ L LP+ IL++K+Y K KR R +KLK L +
Sbjct: 373 GDLVLGYDLESANYNDSVLDEYRSLQLPDVILVRKTYPTKNQAKR---RRFKLKRLAKKA 429
Query: 430 D-DSKGRTDQEKMN----KEYEEFLRDLEENPELRFNI 462
+S + D E + +E+EEFL+DLE++ ELR NI
Sbjct: 430 SQNSAMQMDSEHNDYDNPEEFEEFLQDLEQDIELRSNI 467
>gi|402222141|gb|EJU02208.1| NMD3-domain-containing protein, partial [Dacryopinax sp. DJM-731
SS1]
Length = 521
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/484 (46%), Positives = 307/484 (63%), Gaps = 32/484 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
+ P V VLC CG P+ PN+AN+C+ACLR+ VDITEG+ K ++ C CD +L PP
Sbjct: 3 YIAPPLVHRVLCADCGTPIEPNSANLCIACLRNTVDITEGIPKQSTVNFCRNCDRWLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
TW A+ ES+ELL C+K+LK LN++RL++A FIWTEPHSKRI+VKL +QKEV I+
Sbjct: 63 ATWTIAEPESRELLAICLKKLKGLNKIRLIDAGFIWTEPHSKRIRVKLTIQKEVFTSTIV 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q + VEYV C C+++ A + W A VQ+RQ V H+RTF YLEQLILKH+A
Sbjct: 123 QQIFEVEYVVVHGQCPDCTKLAAK-NTWKAMVQVRQKVNHKRTFLYLEQLILKHNAHRNT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I I + G+DFF+ RSHA+K VEF+ V PV+ + +QL+S D S NYK+T+SVE
Sbjct: 182 ISIKEAKDGLDFFYAQRSHAIKMVEFLTAVVPVKMKSSEQLLSTDIHSGTANYKFTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC++DL+ +PPK A SL N+ PL IC +V NSI LDP TL+ + + YWR+ F
Sbjct: 242 IIPICKDDLVVIPPKQARSLSNIQPLTICSRVGNSIHFLDPQTLQVADVTSPVYWRTPFD 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQV------------ARVSDFGKNDT 355
+L T +E++VLD+E +YVLADAQV + V D D+
Sbjct: 302 ALATVSDTIEFLVLDIEPSGPT----RGRYVLADAQVTPVNSSLGMQASSFVGDGEGQDS 357
Query: 356 IFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRS 415
I+ RTHLG +L PGD LGY L AN N+ D +P+ +L++K+Y + RK++
Sbjct: 358 IYHTRTHLGAILQPGDTVLGYFLTRANYNNATFDTLDPSQVPDVVLVRKTYPNR--RKKT 415
Query: 416 KPRSWKLKSLDMEVDDSK-------------GRTDQEKMNKEYEEFLRDLEENPELRFNI 462
+ R+W+LKS+ E +D G DQ+K+ ++YE FLR+LEE+PELR N+
Sbjct: 416 RTRNWRLKSIAKEAEDPAATGTHGRGALGRMGGVDQQKVERDYELFLRELEEDPELRGNV 475
Query: 463 SLYR 466
+LYR
Sbjct: 476 NLYR 479
>gi|302675617|ref|XP_003027492.1| 60S ribosomal export protein NMD3 [Schizophyllum commune H4-8]
gi|300101179|gb|EFI92589.1| hypothetical protein SCHCODRAFT_70539 [Schizophyllum commune H4-8]
Length = 558
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/549 (42%), Positives = 330/549 (60%), Gaps = 66/549 (12%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+CVACLR+ VDITEG+ K ++ C C+ +L PP
Sbjct: 3 FVPAPPVHRVLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQASVAFCRNCERFLNPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+ W A+ ES ELL+ C+++LK LN+VRL +A FIWTEPHSKR++V + +QKEVL IL
Sbjct: 63 QNWTIARPESSELLSICLRKLKGLNKVRLTDAHFIWTEPHSKRLRVSITIQKEVLTNTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ++ +EY+ Q C C+R+ A D W A VQ+RQ V H+RTF YLEQLILKH+A
Sbjct: 123 EQTFEIEYLVQYGQCPDCARLAAK-DTWKALVQVRQKVPHKRTFLYLEQLILKHNAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ NR+HA+K VEF+ V P+RS+ ++L+S D +N N+K+T+SVE
Sbjct: 182 ISVKEVRDGLDFFYSNRAHALKMVEFLNGVVPIRSKSSERLLSSDTHTNTANFKHTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I P+C+EDL+C+P K A SLGNL PL +C++V +S+ LLD TL+ + A YWR+ F+
Sbjct: 242 IVPVCKEDLVCIPQKQARSLGNLNPLALCIRVGSSLQLLDVATLQTADIPAQVYWRAPFE 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF----------------- 350
SL + LVE+ VLDVE + + + V ADAQVA F
Sbjct: 302 SLASVPDLVEFTVLDVE---PDYSRAKGRLVPADAQVALSGAFRSKASGGHSSSDMDMDF 358
Query: 351 ---GKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYE 407
G IF RTHLG +L PGD ALGY L SAN N + +P+ +L+KK+Y
Sbjct: 359 DDAGSTSQIFHTRTHLGGILQPGDAALGYFLTSANFNSDDFAALPAERIPDLVLVKKAYP 418
Query: 408 EKRLRKRSKPRSWKLKSLDMEVDDSKGRT-------------DQEKMNKEYEEFLRDLEE 454
+ RK+++ R+W+L+S+ E + +G T DQ+K++++YE FLR+LEE
Sbjct: 419 NR--RKKNRARNWRLRSIGKEAGE-EGETGAGRGVVGRMGGRDQKKVDEDYELFLRELEE 475
Query: 455 NPELRFNISLYRNKDYQPSEMAS--------------------------VTDGEDVPSVP 488
+PELR ++LY+ D + S+ A+ D D P V
Sbjct: 476 DPELRATVNLYKAGDVKMSDGAARPAGAGKKRAQFAMEVDEAGQDIETEAEDEPDFPDVK 535
Query: 489 LDELLADLD 497
LDELL D
Sbjct: 536 LDELLEGFD 544
>gi|449551392|gb|EMD42356.1| hypothetical protein CERSUDRAFT_148132 [Ceriporiopsis subvermispora
B]
Length = 554
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/552 (42%), Positives = 328/552 (59%), Gaps = 69/552 (12%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+CVACLR+ VDITEG+ K +S C CD +L PP
Sbjct: 3 FVPSPAVHRVLCADCGTPIVPNSANLCVACLRNSVDITEGIPKQASVSFCRNCDRFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W A+ ES+ELL C+K+LK L++VRL A FIWTEPHSKR++V L +QKEVL IL
Sbjct: 63 SSWTIARPESQELLAICLKKLKGLSKVRLTEAHFIWTEPHSKRLRVSLTIQKEVLTSTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ + +EY+ Q C C+++ A + W A VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 123 EQIFEIEYLVQHGQCPDCAKLAAK-NTWKALVQVRQKVPHKRTFLFLEQLILKHGAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ RSHA+K VEF+G V P+RS+ +QL+S D ++ N+KYT+SVE
Sbjct: 182 ISVKEVRDGLDFFYSQRSHALKMVEFLGSVVPIRSKASEQLLSTDIHTSTANFKYTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I P+C++DL+CLPPK+A S ++ L +C +V NS+ +LDP TL+ + + YWR+ F+
Sbjct: 242 IIPVCKDDLVCLPPKLARSSASINQLALCSRVGNSLHILDPATLQSAEISSAVYWRTPFE 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF--------------GKN 353
SL + LVE+ VLDVE + V G K+VLADAQVAR F G
Sbjct: 302 SLASVPDLVEFTVLDVEPTGT---VRG-KWVLADAQVARAGAFRSNGGGDDDAMDEDGVE 357
Query: 354 DTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRK 413
IF RTHLG +L PGD +GY L +AN N + K +P+ +L++K+Y + RK
Sbjct: 358 SAIFHTRTHLGGILQPGDAVMGYYLTNANFNSDDFAKLPSHRIPDIVLVRKAYPNR--RK 415
Query: 414 RSKPRSWKLKSLDME------------VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFN 461
++K R+W+LKS+ E V G D+ K+ ++YE FLR+LEE+ E+R
Sbjct: 416 KNKTRAWRLKSIAKEEGEEGEASNARGVVGRMGGRDKRKVEEDYELFLRELEEDEEMRGA 475
Query: 462 ISLYRNKDYQPSEMASVTDGE------------------------------------DVP 485
++LYR+KD +P + + G+ D P
Sbjct: 476 VNLYRSKDERPGAGSGLAGGKTRRKAQFAMEVDEGLHTAPETMEGAAGETDNEEEEPDFP 535
Query: 486 SVPLDELLADLD 497
V LDELL D D
Sbjct: 536 EVKLDELLDDFD 547
>gi|321473431|gb|EFX84398.1| hypothetical protein DAPPUDRAFT_194355 [Daphnia pulex]
Length = 509
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/493 (43%), Positives = 318/493 (64%), Gaps = 18/493 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG P+ PN ANMCVACLR++VDI+EG+ K +I C C+ YLQPP WIK LE
Sbjct: 17 ILCCQCGTPIEPNPANMCVACLRTQVDISEGIPKQAVIYFCKGCERYLQPPEQWIKCSLE 76
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+ +LK LNRVRL++A F+WTEPHSKRIKVKL +Q EVL GA+L+Q ++V++V
Sbjct: 77 SRELLGLCLAKLKGLNRVRLIDAGFVWTEPHSKRIKVKLTIQAEVLGGAVLQQVFIVDFV 136
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
C+ C RV+A D W A VQ+RQ H++TF+YLEQLILKH A + I +G
Sbjct: 137 VNGQFCEDCHRVEAK-DFWKANVQVRQKTDHKKTFYYLEQLILKHKAHESTLGIKPTHEG 195
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
IDFF+ N A K ++F+ V P R + K ++S D SN +N K+T+SVEI P+C++ +
Sbjct: 196 IDFFYANEGQAKKMLDFLTSVVPCRYQVSKTVISQDIHSNTYNCKFTYSVEIVPVCKDCV 255
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLP K+A LG +G + + +V+++I L+DPF+ + ++++ YWR+ F +L ++QL
Sbjct: 256 VCLPAKLAHQLGGIGQICVVQRVSSTIHLIDPFSGQIAEVNSNTYWRTPFNALSGTKQLA 315
Query: 317 EYIVLDVEVVS-------SEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+V+D+EV+ + K+VLAD V R ++ G N+ RTHLGHLL P
Sbjct: 316 EYVVMDIEVIRDHEKRTFAGQGAMSYKHVLADVYVCRPNEMGTNE--IHTRTHLGHLLKP 373
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD +GYDL + N ND DK +P+ +L+KK Y +K +R R R +KL+ LD +
Sbjct: 374 GDIVMGYDLANCNVNDDNFDKMNRENMPDVVLVKKMYADKSVRNRR--RKFKLRHLDAD- 430
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPL 489
D +N++Y +FL DLEE+P R NI++Y+++ + E++P + L
Sbjct: 431 -----GMDVTSVNRDYTDFLEDLEEDPAFRQNINIYKDERKVGFAVEVGEPDEEIPQITL 485
Query: 490 DELLADLDLKSDD 502
E+L DL + ++
Sbjct: 486 QEMLDDLHIGDEN 498
>gi|198435795|ref|XP_002120179.1| PREDICTED: similar to nmd3 homolog (s. cerevisiae) [Ciona
intestinalis]
Length = 498
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/505 (46%), Positives = 330/505 (65%), Gaps = 32/505 (6%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
QT G +LCC+CG + PN +NMCV CLR +VDIT+G+ KH + C C YL PP WI
Sbjct: 13 QTQGKILCCECGTEIEPNPSNMCVDCLRCKVDITDGIPKHGNLLQCKNCVRYLSPPVAWI 72
Query: 72 KAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
AQ ES+ELL C+KR+K+ L RVRLV+A FIWTEPHSKR+KVK+ VQKEV G LEQ+
Sbjct: 73 PAQPESRELLAICLKRIKSALQRVRLVDASFIWTEPHSKRVKVKITVQKEVEGGTFLEQT 132
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+VVEYV +HMC C RV+A D W ++VQ+RQ H++TF+YLEQ+ILKH +I
Sbjct: 133 FVVEYVIHNHMCPDCHRVEAK-DYWNSSVQVRQKAGHKKTFYYLEQVILKHKMHQNTTKI 191
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+Q G+DF++ ++ A KF +F+ V P + + ++LVSHD SN FNYK +FSVE+ P
Sbjct: 192 SQKPNGLDFYYSSKQDARKFTDFLMSVLPCKYQSSQKLVSHDTHSNTFNYKTSFSVELPP 251
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
+C++D++CLP K++ LGNLG L+IC++VTN I L+D +L+ + YWR F+++
Sbjct: 252 VCKDDIVCLPKKLSQQLGNLGQLLICVRVTNCIHLIDFSSLQIAEVSGSLYWRHPFQAIC 311
Query: 311 TSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
T + L+E+ ++++E+V S + +K+VLAD V + S+ G +D +RTHLGH
Sbjct: 312 TPKSLIEFTIMEIEIVKQRHFKSGQGLVSNKHVLADCWVIKSSELGMHDEYIHVRTHLGH 371
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
LL PGD ALG DL ++N N+ +LDK KG +P+ IL++K + +++ R+R R+WKL+ +
Sbjct: 372 LLKPGDAALGLDLKNSNVNNDDLDKMKG--MPDVILVRKVFADRQRRRRR--RNWKLQRI 427
Query: 426 ---DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
VD +G Y EFL DLEE+ E R NI +Y + D + S D
Sbjct: 428 GERGSSVDGEEG----------YTEFLEDLEEDKEFRKNIDIYIDGD-----VPSSADET 472
Query: 483 DVPSVPLDELLADLDLKSD---DGE 504
+ PSV L E+L DL +K D DGE
Sbjct: 473 EFPSVSLQEMLQDLSIKDDVEMDGE 497
>gi|297286492|ref|XP_001096663.2| PREDICTED: 60S ribosomal export protein NMD3 isoform 2 [Macaca
mulatta]
Length = 503
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/502 (45%), Positives = 326/502 (64%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLXXXSLFLVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSTVRDIKRAAGAGMISKKHALGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|328863106|gb|EGG12206.1| hypothetical protein MELLADRAFT_46699 [Melampsora larici-populina
98AG31]
Length = 549
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/520 (44%), Positives = 320/520 (61%), Gaps = 37/520 (7%)
Query: 11 PQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
P V VLC CG + PN A +CV CLR+ VDITE + K +S C C YL PP+TW
Sbjct: 14 PTQVAYVLCADCGTAIEPNTAGLCVNCLRNTVDITEEIPKQTALSFCRNCSRYLSPPQTW 73
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ A+LESKELL C++RLK L +VRL++A FIWTEPHSKR++VKL +QKEVL IL+Q
Sbjct: 74 LLAELESKELLAICLRRLKGLTKVRLIDAGFIWTEPHSKRLRVKLTIQKEVLASTILQQI 133
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ Q C +C R+ A + W A VQ+RQ V H+RTF YLEQLILKH A + I
Sbjct: 134 FEVEYIVQHTQCPTCCRLAAK-NMWRALVQVRQKVDHKRTFLYLEQLILKHSADKDTVGI 192
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DFF+ R HA+K VEF+ + PVRS+ +QL+S D KS+ NYK+T+SVE+ P
Sbjct: 193 KESKDGLDFFYATRQHAIKMVEFLSAITPVRSKTSEQLISADEKSSTANYKFTYSVELVP 252
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++D++CLP K+A S N+ +++C +V S+ L+DP TL+ L YWR+ F L
Sbjct: 253 ICKDDIVCLPAKLARSQANVAQILVCTRVGTSVHLVDPITLQAIDLQGPVYWRNPFPPLA 312
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
+ +E++VLD+E G K+ LADAQV+ V+ +D IF RTHLG +L PG
Sbjct: 313 SVSNCIEFVVLDIEPTCHPPKHVG-KFYLADAQVSPVTSSMGDDAIFHTRTHLGGILRPG 371
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D LGY L ++N ND + K +PE IL++K+Y +R R R++ +WKL+S+ E
Sbjct: 372 DTVLGYHLANSNFNDTNFELMKSDRIPEVILVRKTYPNRRKRNRTR--NWKLRSIAKEAQ 429
Query: 431 D------------------SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQP 472
D S+G DQ K+ EYE FLRDLEE+PELR N+ L++ + Q
Sbjct: 430 DAPEDHAGLGRAKVEAKKGSRGMADQAKVEAEYELFLRDLEEDPELRQNVQLFKAEPKQK 489
Query: 473 ----------SEMASVTDGE-----DVPSVPLDELLADLD 497
+ SV + E D P + LDELL +++
Sbjct: 490 KMAIDSMEIEGDAESVVETEMDEDDDFPKIQLDELLDEME 529
>gi|169851843|ref|XP_001832610.1| 60S ribosomal export protein NMD3 [Coprinopsis cinerea
okayama7#130]
gi|116506258|gb|EAU89153.1| RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 562
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/555 (42%), Positives = 331/555 (59%), Gaps = 61/555 (10%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
FT V VLC CG P+ PN+AN+CVACLR+ +DITEG+ K ++ C C+ +L PP
Sbjct: 3 FTPGPAVHRVLCADCGTPIVPNSANLCVACLRNTIDITEGIPKQTSVAFCRNCERFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
W A+ ES ELL C+K+LK L++VRL +A FIWTEPHSKR+KV L +QKEVL IL
Sbjct: 63 GGWTIAKPESSELLAICLKKLKGLSKVRLTDARFIWTEPHSKRLKVALTIQKEVLTNTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ++ +EY+ Q C C+R+ A + W A VQ+RQ V+H+RTF +LEQLILKH+A
Sbjct: 123 EQTFEIEYLVQYGQCPDCARLAAK-NTWRAMVQVRQKVSHKRTFLFLEQLILKHNAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I I ++ G+DFF+ RSHA+K VEF+G V P+RS+ +Q++S D ++ N+KYT+SVE
Sbjct: 182 ISIKEVRDGLDFFYSTRSHALKMVEFLGGVVPIRSKSAEQIISSDTHTSTANFKYTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I P+C++DL+CLP K A SL N+ PL +C +V NS+ LLDP TL+ + A YWRS F
Sbjct: 242 IVPVCKDDLVCLPLKQARSLSNISPLTLCTRVGNSLQLLDPSTLQTAEIPATLYWRSPFD 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF----------------- 350
SL LVE+ VLD+E ++ K+V+ADAQVA F
Sbjct: 302 SLAAVTDLVEFTVLDIEPDRTKTR---GKWVMADAQVALSGAFKSSKHRHDDSMMMDYEG 358
Query: 351 --GKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEE 408
G IF RTHLG +L PGD A+GY + ++N N + +P+ IL+KK+Y
Sbjct: 359 NGGAPTMIFHTRTHLGAILQPGDSAMGYYVSNSNFNSDAFTELPSDRIPDVILVKKAYPN 418
Query: 409 KRLRKRSKPRSWKLKSLDMEVDDSK------------GRTDQEKMNKEYEEFLRDLEENP 456
+R + +K R+WKL+S+ E + G D +K+ ++YE FLR++EE+P
Sbjct: 419 RRKKHSNKARNWKLRSIAKEAGEDGDTGGARGAIGRMGGRDAKKIEEDYELFLREIEEDP 478
Query: 457 ELRFNISLY---------------RNKDYQPS----EMASVTDGE------DVPSVPLDE 491
+LR ++LY R K Q S E+ TD + D P + ++E
Sbjct: 479 DLRAAVNLYKADVKMDTTDGAAKTRKKGGQYSMDVDEVQESTDDDHDENEADFPEIKIEE 538
Query: 492 LLADLD-LKSDDGEG 505
LL + D + + GEG
Sbjct: 539 LLDEFDEMTLNAGEG 553
>gi|167537058|ref|XP_001750199.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771361|gb|EDQ85029.1| predicted protein [Monosiga brevicollis MX1]
Length = 521
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/502 (44%), Positives = 329/502 (65%), Gaps = 12/502 (2%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
Q V ++LC +CG+ + PN A MC C+R++VDI+EG+ K+ I C C+ YL PP TWI
Sbjct: 28 QRVNTILCIQCGVAIPPNPAAMCGNCIRTQVDISEGIPKNASIYFCRGCERYLNPPTTWI 87
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A+LES++LL C+KRL+ LN+VRLV+A F+WTEPHS+R+KVK+ +QKEVL+GAILEQ +
Sbjct: 88 HAELESRDLLALCLKRLRGLNKVRLVDAAFVWTEPHSRRVKVKVTIQKEVLSGAILEQGF 147
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
VVEYV + C C R +A D W A VQ+RQ V H++TFF+LEQLI+KH+A R +RI
Sbjct: 148 VVEYVVEHQFCPECHRQEA-ADTWNACVQVRQKVKHKKTFFHLEQLIIKHNAHDRTLRIK 206
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ GIDF+F +RS A + VEF+ V P R + ++L+S D ++NNFNYKYT+SVEI PI
Sbjct: 207 SVPDGIDFYFNSRSDAKRMVEFLMAVVPCRYKTSERLISSDIQNNNFNYKYTYSVEIVPI 266
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C+ED++ LPP + G + P+ IC +V S+ ++DPFTL + + +WR F+++ +
Sbjct: 267 CKEDVVTLPPALRRQFGGMAPIGICDRVGTSVRIMDPFTLHSADVTSTVFWRHPFRAICS 326
Query: 312 SRQLVEYIVLDVEVVSSEVN--VGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
E++VLD+E V V K+VLA+A VAR D G ND F +RTHLG++L P
Sbjct: 327 HGGYTEFMVLDIEPVFGPDGRPVQHGKHVLAEATVARERDLGSNDQQFFVRTHLGNILQP 386
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD G+D+ +A ND +K LPE +L+KKSY ++R + R + ++ +
Sbjct: 387 GDLVWGFDMTTAVVNDEHTNKLNQDHLPEIVLVKKSYSDRRKKSRKRRFKLRM----LPK 442
Query: 430 DDSKGRTDQEKMN-KEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
+D R D+E ++ + F+ D+EE+ E R N +LY+N +Y PS + ++GED +
Sbjct: 443 EDEAVRPDEEDAAMRDLDAFMDDIEEDREYRQNFNLYKNAEYHPS---TESEGEDDLHIG 499
Query: 489 LDELLADLD-LKSDDGEGDDSM 509
+DELL + + + DDG+ M
Sbjct: 500 VDELLDEFENMDLDDGQAAPDM 521
>gi|328706094|ref|XP_001952313.2| PREDICTED: 60S ribosomal export protein NMD3-like [Acyrthosiphon
pisum]
Length = 510
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/507 (44%), Positives = 314/507 (61%), Gaps = 17/507 (3%)
Query: 4 DAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
D +VP TV +LCC+CG+PM PN ANMCV+CLR VDIT+ + K I+ C C+ Y
Sbjct: 7 DYAPTSVPATVLKILCCQCGVPMEPNPANMCVSCLRIHVDITQDIPKQGILQFCRNCERY 66
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
LQPP WI LESKELL C+++LK LN+V+LV+A FIWTEPHSKRIKVKL V EV++
Sbjct: 67 LQPPFEWISCALESKELLGLCLRKLKALNKVKLVDAGFIWTEPHSKRIKVKLTVHGEVMS 126
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
G L+Q +VVE+ + MCD C R +A D W A VQ+RQ +++TF+YLEQL+LKH A
Sbjct: 127 GMTLQQVFVVEFTVANQMCDDCHRSEAQ-DYWRALVQVRQKSDNKKTFYYLEQLMLKHKA 185
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
+ I G+DFF+ S A K V+F+ V P R +H K+L+SHD SN +NYK+T
Sbjct: 186 HKNTLSIKPESNGLDFFYSTESQARKLVDFMTAVLPCRYQHSKKLLSHDIHSNTYNYKFT 245
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
+S+EI P+ ++ ++CL K++ LG + PL I +VTNSI L+DP T + + + YWR
Sbjct: 246 YSMEIVPVMKDSVVCLSKKLSQQLGGISPLCIVYRVTNSIKLIDPSTAQLAEVSSSAYWR 305
Query: 304 SSFKSLLTSRQLVEYIVLDVEVV--SSEVNVGGS-----KYVLADAQVARVSDFGKNDTI 356
SF+S+ S+QL EY V+D+E + V G K++LAD V R D G
Sbjct: 306 DSFQSVFKSKQLTEYTVMDIEPIMEKDRVQFPGQGQLSYKHMLADVWVVRSCDLGLTTDS 365
Query: 357 FSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSK 416
R+HLGH+L P D LGY + +N ND DK LP+ ILIKK+Y + R R +
Sbjct: 366 IHCRSHLGHVLKPMDTVLGYAVADSNANDSNFDKLPKSSLPDVILIKKNYPD---RARHR 422
Query: 417 PRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
R+WKLK + + + + E + + +EF+ DLEE+ +LR NI++Y+N D A
Sbjct: 423 RRTWKLKRMTTDTE-----MNMESDHNDMDEFMDDLEEDKDLRQNINIYKNPDVGIESAA 477
Query: 477 SVTDGED-VPSVPLDELLADLDLKSDD 502
D D P + L+E++ DL + DD
Sbjct: 478 EDDDDNDGAPRISLEEMMEDLCIYEDD 504
>gi|260945473|ref|XP_002617034.1| hypothetical protein CLUG_02478 [Clavispora lusitaniae ATCC 42720]
gi|238848888|gb|EEQ38352.1| hypothetical protein CLUG_02478 [Clavispora lusitaniae ATCC 42720]
Length = 506
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/495 (46%), Positives = 322/495 (65%), Gaps = 18/495 (3%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG+PM + MC C++ VDITEG+ + IS C C+ +LQPP+ WI+
Sbjct: 14 VATVLCCNCGVPMDGSSGLVMCYDCIKLNVDITEGIPREANISFCRNCERFLQPPQQWIR 73
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A+LES+ELL C++RLK L++VRL++A FIWTEPHS+RI+VKL VQ E + I++Q++
Sbjct: 74 AELESRELLAICLRRLKGLSKVRLIDASFIWTEPHSRRIRVKLTVQGEAMQNTIVQQTFE 133
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH+A I I +
Sbjct: 134 VEYVVIAMQCPDCAK-SFTANTWRATVQIRQKVAHKRTFLYLEQLILKHNAHQDTISIQE 192
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ R+HA K ++F+ VAP++S+ ++L+S D +S + +YK++FSVEI+PIC
Sbjct: 193 TKDGLDFFYSQRNHATKMLDFLNAVAPIKSKRSEELISIDTQSGSSSYKFSFSVEIAPIC 252
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A LGN+ LVIC KV+N + LDP TL+ L A YWR+ F SLL
Sbjct: 253 RDDLVVLPRKLANQLGNIPRLVICSKVSNMLQFLDPNTLQTADLQAGVYWRAPFFSLLDV 312
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QLVE+IVLDVE +V G K+VLAD V+R SDFG ND F +R+HLG +L+PGD
Sbjct: 313 TQLVEFIVLDVEPTG---DVKG-KHVLADITVSRASDFGVNDNTFYVRSHLGGILHPGDS 368
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME---- 428
+GY L + N N D PE +LIKK Y K K+SK R+WKLK + E
Sbjct: 369 CMGYYLTNTNFNSDLWDTLDTDNCPEVVLIKKHYVRK--SKKSKYRNWKLKRMAREHNEI 426
Query: 429 ---VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED-- 483
D + + +QE+ ++YE FL++LEE+ ELR I+LY+ + P + + +D
Sbjct: 427 MANEDSRQAKQEQERAERDYELFLQELEEDQELRKTINLYKAGEEAPQDADDEDEMDDDE 486
Query: 484 -VPSVPLDELLADLD 497
P + +DELL ++D
Sbjct: 487 VAPEIGIDELLDEID 501
>gi|353238409|emb|CCA70356.1| probable NMD3-nonsense-mediated mRNA decay protein [Piriformospora
indica DSM 11827]
Length = 570
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/493 (44%), Positives = 307/493 (62%), Gaps = 39/493 (7%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F P V VLC CG P+ PN+AN+C+ CLR+ VD+TEG+ K I++C CD +L PP
Sbjct: 3 FVPPTLVHRVLCADCGTPIEPNSANLCIPCLRNSVDVTEGIPKSASINYCRNCDRFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
TW AQ ES+ELL C+K+LK LN+VRLV+A FIWTEPHSKR++VKL +QKEV I+
Sbjct: 63 ATWTIAQPESRELLAICLKKLKGLNKVRLVDAGFIWTEPHSKRLRVKLTIQKEVFTSTIV 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ + VEYV Q C C+++ A + W A +Q+RQ V+H+RTF +LEQLILKH+A
Sbjct: 123 EQVFEVEYVVQHGQCPDCTKLAAK-NTWQAVIQVRQKVSHKRTFLFLEQLILKHNAHKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+ I ++ G+DF++ + SHA K VEF+ V PV++ QL+S D SN NYK+T SV+
Sbjct: 182 VSIKEVKDGLDFYYAHESHAQKMVEFLASVVPVQTIRSAQLISRDTHSNTANYKFTHSVQ 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC++DL+C+P K A SL N+ PL IC +V N++ LLDP TL+ + + YWR F
Sbjct: 242 IVPICKDDLVCIPAKQARSLSNISPLTICSRVGNTVHLLDPSTLQETDVTSPVYWREPFS 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF----------------G 351
+L + LVE+IVLD+E V K+VLADA+VA + F G
Sbjct: 302 ALASVTDLVEFIVLDIE----PSGVVKGKHVLADAEVAPANSFVSKSGNDADMDMDSHHG 357
Query: 352 KNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRL 411
DT + RTHLG +L PGD +GY L +N N + +P+ IL+KKSY +
Sbjct: 358 SLDTTYHTRTHLGGILQPGDTVMGYWLTRSNFNSTAFESLDSSRIPDVILVKKSYPNR-- 415
Query: 412 RKRSKPRSWKLKSLDMEVDDSKG----------------RTDQEKMNKEYEEFLRDLEEN 455
RK+SK R+WKLKS+ E ++ G DQ+K+ ++YE FL+ +EE+
Sbjct: 416 RKKSKQRNWKLKSMAKEAEEGAGINESGGYGRGALGRRGGLDQKKVERDYEIFLQSIEED 475
Query: 456 PELRFNISLYRNK 468
++R I+LY+ +
Sbjct: 476 TDMRAAINLYKGQ 488
>gi|403418058|emb|CCM04758.1| predicted protein [Fibroporia radiculosa]
Length = 552
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/501 (44%), Positives = 314/501 (62%), Gaps = 34/501 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+CVACLR+ VDITEG+ K +S C C+ +L PP
Sbjct: 3 FVPAPAVHRVLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQASLSFCRNCERFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W AQ ES+ELL C+K+LK LN+VRL A FIWTEPHSKR++V L +QKEVL IL
Sbjct: 63 SSWTIAQPESQELLAICLKKLKGLNKVRLTEAHFIWTEPHSKRLRVSLTIQKEVLTSTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ + +EY+ Q C C+++ A + W A VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 123 EQIFEIEYLVQYGQCPDCTKLAAK-NTWKALVQVRQKVPHKRTFLFLEQLILKHGAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ RSHA+K V+F+ V P+RS+ +QL+S D +N N+KYT+SVE
Sbjct: 182 ISVKEVKDGLDFFYSQRSHAIKMVDFLTSVVPIRSKASEQLLSADTHTNTANFKYTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I P+C++DL+CLP K++ SL N+ PL +C +V N++ LLDP TL+ + A YWR+ F
Sbjct: 242 IIPVCKDDLVCLPAKLSRSLSNITPLTMCSRVGNTLHLLDPSTLQSSEVSAQVYWRTPFD 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKN-------------D 354
SL T LVE+ VLD+E S G K+VLADAQVA F + +
Sbjct: 302 SLTTVSDLVEFTVLDIE--PSGTTRG--KWVLADAQVALSGAFKSHDDDAMDDDSGAGAN 357
Query: 355 TIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKR 414
IF RTHLG +L PGD LGY L +AN N +P+ +L+KK+Y + RK+
Sbjct: 358 QIFHTRTHLGGILQPGDAVLGYYLSNANFNSDAFAALPAHRIPDVVLVKKAYPNR--RKK 415
Query: 415 SKPRSWKLKSLDMEVDDSKGRT-------------DQEKMNKEYEEFLRDLEENPELRFN 461
++ R+W+L+S+ E + +G T D+ K++++YE FLRDLEE+ E+R
Sbjct: 416 NRARNWRLRSIAKE-EGEEGDTGSGRGVVGRMGGRDKRKVDEDYELFLRDLEEDEEMRGA 474
Query: 462 ISLYRNKDYQPSEMASVTDGE 482
++LYR K P + + G+
Sbjct: 475 VNLYRAKSDNPGAGSGMAGGK 495
>gi|393213806|gb|EJC99301.1| NMD3-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 565
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/557 (43%), Positives = 326/557 (58%), Gaps = 74/557 (13%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG + PN+AN+C+ACLR+ VDITEG+ K +S C C+ +L PP
Sbjct: 3 FVAAPPVHRVLCADCGTLIEPNSANLCIACLRNSVDITEGIPKQGSLSFCRNCERFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
W A+ ES+ELL C+K+LK LN+VRL+++ FIWTEPHSKRIKVKL +QKEV IL
Sbjct: 63 SAWTIAEPESRELLAICLKKLKGLNKVRLIDSGFIWTEPHSKRIKVKLTIQKEVFTSTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q + VE++ Q C C+R+ A + W A VQ+RQ V+H+RTF +LEQLILKH A
Sbjct: 123 QQVFQVEFIVQYTQCSECARLAAK-NTWKALVQVRQKVSHKRTFLFLEQLILKHGAQKET 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ RSHA++ EF+ V PVR++ ++L+S D SN +YK+T+SVE
Sbjct: 182 ISVKEVRDGLDFFYSQRSHALRMTEFLNGVVPVRTKSSERLLSTDTHSNTSSYKFTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I+PIC++DL+CLP K A SL N+ PL +C +V NSI LLDP TL+ + A YWR+ F+
Sbjct: 242 IAPICKDDLVCLPLKQARSLSNISPLALCTRVGNSIHLLDPATLQSVDVSAQVYWRAPFE 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVA-----RVSDFGKN--------- 353
+L LVE+ VLDVE V G K+VLADAQVA R S N
Sbjct: 302 ALAGVSDLVEFTVLDVEPSGP---VKG-KWVLADAQVAVNGAFRSSSTHTNEGGDADMDY 357
Query: 354 ------DTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYE 407
D IF RTHLG +L PGD LGY L AN N +P+ +L++K+Y
Sbjct: 358 DDDGTLDQIFHTRTHLGGILQPGDTVLGYHLSRANFNSDAFTALPSSRVPDVVLVRKTYP 417
Query: 408 EKRLRKRSKPRSWKLKSLDME-----VDDSKGRT---------DQEKMNKEYEEFLRDLE 453
+ RK++KPR+W+LKS+ E D S R DQ+K+ ++YE FLRD+E
Sbjct: 418 NR--RKKNKPRAWRLKSMAKEEGEEATDASNARGGVIGRMGGRDQKKVEEDYELFLRDIE 475
Query: 454 ENPELRFNISLYRNKDY-----------------------------QPS-EMASVTDGE- 482
E+ E R ++LY+ QPS M + TDGE
Sbjct: 476 EDEETRAAVNLYKRPGAGSGVAGGKTRRKQVTMDVDMEEQQEPTPEQPSTSMEAETDGEE 535
Query: 483 --DVPSVPLDELLADLD 497
D P V LDELL D D
Sbjct: 536 EPDFPEVKLDELLDDFD 552
>gi|336375778|gb|EGO04114.1| hypothetical protein SERLA73DRAFT_102468 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388897|gb|EGO30041.1| hypothetical protein SERLADRAFT_433969 [Serpula lacrymans var.
lacrymans S7.9]
Length = 558
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/551 (43%), Positives = 324/551 (58%), Gaps = 68/551 (12%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+CVACLR+ VDITEG+ K +S C C+ +L PP
Sbjct: 3 FVPAPAVHRVLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQSSVSFCRNCERFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
++W A+ ES+ELL C+K+LK LN+VRL A FIWTEPHSKR++V L VQKEVL IL
Sbjct: 63 QSWSLARPESQELLAICLKKLKGLNKVRLTEAHFIWTEPHSKRLRVSLTVQKEVLTSTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ + +EY+ Q C C+++ A + W A VQ+RQ V H+RTF +LEQLI+KH A
Sbjct: 123 EQVFEIEYLVQHGQCPDCAKLAAK-NTWKALVQVRQKVPHKRTFLFLEQLIIKHGAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ R+HA+K VEF+ V PVRS+ +QL+S D S +YK+T+SVE
Sbjct: 182 ISVKEVKDGLDFFYSQRNHAIKMVEFLAGVVPVRSKGSEQLLSTDTHSGTASYKFTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I P+C++DL+C+P K A L N+ PL IC +V +S LLD TL+ C + A YWR F
Sbjct: 242 IVPVCKDDLVCIPLKQARQLSNISPLTICTRVGSSFQLLDVSTLQTCEISAQVYWRVPFD 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDT------------ 355
SL LVE+ +LD+E S V G K+VLADAQVA F + T
Sbjct: 302 SLAQVTDLVEFTILDIEPSGS---VRG-KWVLADAQVAMSGAFRSSGTHADDDGMDYENS 357
Query: 356 -----IFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKR 410
I+ RTHLG +L PGD ALGY L +AN N + +P+ IL+KK+Y +
Sbjct: 358 AISNQIYHTRTHLGAILQPGDTALGYHLSNANFNSDDFSSLPSSRIPDIILVKKAYPNR- 416
Query: 411 LRKRSKPRSWKLKSLDMEV------------DDSKGRTDQEKMNKEYEEFLRDLEENPEL 458
RK+SK R+WKL+S+ E G D +K++++YE FLRDLEE+PE+
Sbjct: 417 -RKKSKARNWKLRSIAKEAGEEGETGGGRGVVGRMGGRDNKKVDEDYELFLRDLEEDPEM 475
Query: 459 RFNISLYRNKDYQPSEMAS-------------VTDGEDVPS------------------- 486
R ++LY+ KD + E+ S V +G D PS
Sbjct: 476 RGAVNLYKAKDVKMREVGSGDKTTRKGQYGMDVDEGMDAPSMGGDDEDKEAGEEEPDFPE 535
Query: 487 VPLDELLADLD 497
V LDELL D D
Sbjct: 536 VKLDELLEDFD 546
>gi|156346911|ref|XP_001621572.1| hypothetical protein NEMVEDRAFT_v1g144377 [Nematostella vectensis]
gi|156207654|gb|EDO29472.1| predicted protein [Nematostella vectensis]
Length = 491
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/490 (46%), Positives = 311/490 (63%), Gaps = 31/490 (6%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
S LCC+CG+P PN+ANMCV C+RS+VDITEG+ K + C C+ + PP W L
Sbjct: 10 SSLCCQCGLPTPPNSANMCVGCIRSQVDITEGIPKQSTLYFCKNCERQVDPPNNWASCAL 69
Query: 76 ESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
ES+ELL C+K+LK LN+VRL++A F+WTEPHSKRIKVKL +QKEV+N IL+Q +VVEY
Sbjct: 70 ESRELLAICLKKLKGLNKVRLIDAGFVWTEPHSKRIKVKLTIQKEVMNSTILQQVFVVEY 129
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
V Q MCD+C R QA D W A VQ+RQ +H++TFFYLEQLI+KH+ +++ Q
Sbjct: 130 VVQGQMCDACHR-QAAQDFWKAVVQVRQKTSHKKTFFYLEQLIIKHNVHQNTVKVKQESD 188
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
GIDF++ ++ A KFV+F+ V P R + ++L+SHD +N FNYKYTFSVEI PICRE+
Sbjct: 189 GIDFYYASKQDARKFVDFLQSVVPCRFKTSEKLISHDIHNNTFNYKYTFSVEIIPICREE 248
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQL 315
+ICLP K+A SLGN+G LVIC +VT S+ +DP TL+ L A+ YWR F+SL + + L
Sbjct: 249 VICLPLKLARSLGNIGQLVICNRVTTSLQFIDPSTLKTAELLANNYWRLPFQSLGSYKHL 308
Query: 316 VEYIVLDVEVVSSEVNVGGS------KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+VL VE V ++ GS K+VLAD VAR+ D G ND F RTHLG LL
Sbjct: 309 TEYMVLQVEPVDPKLQTMGSTTSLSQKHVLADVWVARMQDMGSNDQQFHCRTHLGLLLKS 368
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD LG L N L + P T+ +SK + ++M +
Sbjct: 369 GDTVLG-QLVICNRVTTSLQ----FIDPSTL-------------KSKAQQTIQHVVNMIL 410
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPL 489
T E ++Y+EFL DLEE+ LR N+++Y ++D+ P A + E++P + L
Sbjct: 411 TH---LTFSEFGFRDYDEFLADLEEDKTLRQNVNIYVDRDHMPESDA---EDEEIPKISL 464
Query: 490 DELLADLDLK 499
E+L DL L+
Sbjct: 465 QEMLEDLKLE 474
>gi|147901478|ref|NP_001085853.1| 60S ribosomal export protein NMD3 [Xenopus laevis]
gi|82184282|sp|Q6GNS3.1|NMD3_XENLA RecName: Full=60S ribosomal export protein NMD3
gi|49115525|gb|AAH73430.1| MGC80914 protein [Xenopus laevis]
Length = 504
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/500 (47%), Positives = 340/500 (68%), Gaps = 20/500 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC+CGIP+ PN ANMCVACLR++VDI+EG+ K V + C +C+ YLQPP TWI+
Sbjct: 13 GNILCCQCGIPIPPNPANMCVACLRTQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++
Sbjct: 133 DYVVQAQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ H K VEF+ P R + ++L+SHD +N +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYASKQHGQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++L+CL PK+A SLGN+ + IC +VT++I L+DP TL+ +D + YWR F SL +
Sbjct: 252 DNLVCLSPKLAQSLGNMNQICICARVTSTIHLIDPSTLQIAEVDGNTYWRYPFNSLFHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
Q+ E+IV+D E++ G+ K+VLA+ V + S+ + RTHLGHLLN
Sbjct: 312 QMEEFIVMDTEIIRDRKQAAGAGMRSNKHVLAEVWVQKTSEMNTTQQ-YHCRTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ R ++R +WKLK +D
Sbjct: 371 PGDLVLGFDLSNCNLNDEFINKMNPHHIPDVVLIKKSYDRARRQRRR---NWKLKEMDR- 426
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D TD E ++Y++FL DLEE+ LR N+++++N + P E S TD E P +
Sbjct: 427 -DREGMDTDDE---RQYQDFLEDLEEDELLRKNVNIFKNANV-PVE--SDTDEEGAPRIS 479
Query: 489 LDELLADLDLKSDDGEGDDS 508
L E+L DL + S D G++
Sbjct: 480 LAEMLEDLHI-SQDATGEEG 498
>gi|449019782|dbj|BAM83184.1| nonsense-mediated mRNA decay protein 3 [Cyanidioschyzon merolae
strain 10D]
Length = 580
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/574 (42%), Positives = 336/574 (58%), Gaps = 80/574 (13%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
Q+ ++LCC CG P+ N +NMCV CLRS+VD+T+G K + +C C YL PP+TW+
Sbjct: 9 QSTVTILCCLCGAPITANPSNMCVHCLRSQVDLTQGFPKQCALVYCKFCGRYLVPPKTWV 68
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
+A LESKEL+T C+KRLK L ++ LV+A F+WTEPHS+RI+++L VQ EVLN ILEQS+
Sbjct: 69 RADLESKELMTICLKRLKRLVKLHLVDAAFVWTEPHSRRIRLRLTVQDEVLNRTILEQSF 128
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
+VE+V + C C R A + W A VQLRQ V H+RT FYLEQLILKH+A + I
Sbjct: 129 IVEFVVELQQCADCKREAAKIEAWEAVVQLRQRVDHKRTLFYLEQLILKHNAHEDVLGIR 188
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
Q G+DF+F +RSHA+KF+ F+ VA VR R LVSHDP +N + YKYTFS EI PI
Sbjct: 189 QQKDGLDFYFVHRSHALKFLSFLHNVACVRQRQSNHLVSHDPSNNVYRYKYTFSAEIPPI 248
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
CREDL+ LPP+VA LG L L++ ++TN I LLDP T +D YWR +L+
Sbjct: 249 CREDLVYLPPRVATQLGGLSSLLLVHRITNQIRLLDPLTGFEHHIDGATYWRLGLTALMN 308
Query: 312 SRQLVEYIVLDVEVVSSEVNVGG-----SKYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
+R+L ++VLDVE V + ++ LADA VAR +D G ND F +RTHLG++
Sbjct: 309 ARRLTAFVVLDVEPVERDPAATSCGHLDQRFRLADATVARAADLGVNDQQFLVRTHLGNI 368
Query: 367 LNPGDYALGYDLYSANNNDMEL------DKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
L GD LGYDL SAN N+ +L D K LPE +L+K+ Y + R R+K R W
Sbjct: 369 LKAGDLVLGYDLVSANLNESDLFESLQSDSLKA-TLPEIVLVKRGYPQ---RDRTKQRIW 424
Query: 421 KLKSL---DMEVDDSK----------GRTDQEK---MNKEYEEFLRDLEENPELRFNISL 464
L+ L D +V + + GR ++ + ++ EEF+++LE++PELR ++L
Sbjct: 425 TLRELPKDDGDVGEHRHALREGARVTGRQRDQRDVALERDREEFMQELEQDPELRATVNL 484
Query: 465 YR-------------------NKDYQPSEMASVT-----------DGE------------ 482
Y+ ++ + SE A DG+
Sbjct: 485 YKDPTKFVEDGLGRLGIRYPGDRKWTASERAQGQSRRNVQNANRFDGQRGMNAYAVLEAD 544
Query: 483 -------DVPSVPLDELLADLDLKSDDGEGDDSM 509
D PSV LDELL LD+ D +G D++
Sbjct: 545 TDADQSDDYPSVSLDELLDGLDISDDADQGQDAV 578
>gi|241856628|ref|XP_002416064.1| NMD protein affecting ribosome stability and mRNA decay, putative
[Ixodes scapularis]
gi|215510278|gb|EEC19731.1| NMD protein affecting ribosome stability and mRNA decay, putative
[Ixodes scapularis]
Length = 508
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/499 (46%), Positives = 323/499 (64%), Gaps = 22/499 (4%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC CG+P+ PN +NMCVACLR EVDI+EG+ K + C C+ YLQPP W+ A LE
Sbjct: 16 ILCCTCGVPVEPNPSNMCVACLRQEVDISEGIPKQGTLYFCRGCERYLQPPAHWVHASLE 75
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL +K++K LNRVRLV+A F WTEPHS+RI+V+L VQKEV G IL+Q +VVE+
Sbjct: 76 SRELLALLLKKIKGLNRVRLVDAGFEWTEPHSRRIRVRLTVQKEVAGGTILQQVFVVEFA 135
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MCD C R +A D W A VQ+RQ V H++TF YLEQL+LKH A + I G
Sbjct: 136 VNHQMCDKCHRREAK-DFWRALVQVRQKVQHKKTFLYLEQLMLKHQAHKDCLNIKACHGG 194
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF+F + A K V+F+ + P R +QL+SHD SN FNYK TFSVEI+P+C++D+
Sbjct: 195 LDFYFSKKDEARKLVDFLQTMVPCRYVMSQQLISHDVHSNVFNYKNTFSVEIAPVCKDDV 254
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLPP VA SLG++ + +C++VT+SI L+DP TL+ L A Q+WR+ F+ L +QL
Sbjct: 255 VCLPPAVARSLGSMSQICVCLRVTSSIHLMDPSTLQVSELSAQQFWRNPFQGLCAPKQLT 314
Query: 317 EYIVLDVEVVS--SEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EYIV+DV V G ++VLADA V R D G ++ RTHLGHLL P
Sbjct: 315 EYIVMDVSHVKDVDRTFFAGQGKLSFRHVLADAWVIRACDLGTHENYTHCRTHLGHLLKP 374
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD LG+DL +AN ND +K K PE +L+KK + ++ RS+ R WKLK L +++
Sbjct: 375 GDSVLGFDLANANINDAHFEKLKADKRPEVVLVKKVFGDR--MSRSQKRRWKLKRLQLDM 432
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED--VPSV 487
+ T+ + ++Y EFL +LEE+ R N+++Y +++ ++A TD ED +P +
Sbjct: 433 E-----TETSSVARDYTEFLEELEEDAVYRQNVNVYLDRE----KLAVDTDDEDGELPKI 483
Query: 488 PLDELLADLDLKSDDGEGD 506
L E+L DL L+ DD GD
Sbjct: 484 TLQEMLDDLCLE-DDPMGD 501
>gi|302308280|ref|NP_985156.2| 60S ribosomal export protein NMD3 [Ashbya gossypii ATCC 10895]
gi|299789379|gb|AAS52980.2| AER299Cp [Ashbya gossypii ATCC 10895]
gi|374108381|gb|AEY97288.1| FAER299Cp [Ashbya gossypii FDAG1]
Length = 512
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/496 (44%), Positives = 320/496 (64%), Gaps = 20/496 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q +VLCC CG+PM + MC C++ VDITEG+ + +S C C+ +LQPP W
Sbjct: 13 QQAATVLCCNCGVPMDGSSGLVMCYDCIKMTVDITEGIPREANVSFCRNCERFLQPPGQW 72
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RIKVKL VQ E + I++Q+
Sbjct: 73 IRAELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIKVKLTVQGEAMTNTIIQQT 132
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEYV C C+R + W A+VQ+RQ V H+RTF YLEQLILKH+A I I
Sbjct: 133 FEVEYVVVAMQCADCAR-SYTTNTWRASVQIRQKVPHKRTFLYLEQLILKHNAHVDTISI 191
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DF++ ++HAVK ++F+ V PV+++ ++L+S D + YK+T+SVE++P
Sbjct: 192 SEAKDGLDFYYSQKNHAVKMLDFLNAVVPVKAKKSEELISQDTHTGASTYKFTYSVELAP 251
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
ICR+DL+ LP K+A ++GN+ V+C KV+N++ LDP TL+ + A YWR+ F +L
Sbjct: 252 ICRDDLVVLPKKLAHNVGNITQFVLCSKVSNTLQFLDPTTLQTADVPASVYWRTPFNNLA 311
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QL+E+IVLDVE +V G ++VLAD VAR SD G ND ++ +R+HLG + +PG
Sbjct: 312 DVSQLIEFIVLDVEPTG---DVRG-RWVLADVTVARASDLGVNDQVYYVRSHLGAICHPG 367
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D +GY + ++N N D +P+ +L+KK Y+ RK K R+WKLK + E
Sbjct: 368 DSVMGYYIANSNYNSDLFDTLNFDRVPDVVLVKKLYQ----RKTRKNRNWKLKRMAKEHK 423
Query: 431 D---------SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDG 481
D + + DQE+ ++YE FL++LEE+ E+R I+LY+N SE TD
Sbjct: 424 DIDASQDYSSRQQKVDQERAERDYELFLQELEEDQEMRQAINLYKNSKPVDSEEMQETDD 483
Query: 482 EDVPSVPLDELLADLD 497
E P + +DELL +LD
Sbjct: 484 E-APQIDIDELLDELD 498
>gi|442762905|gb|JAA73611.1| Putative 60s ribosomal export protein nmd3, partial [Ixodes
ricinus]
Length = 460
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/462 (46%), Positives = 316/462 (68%), Gaps = 16/462 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+T +LCC+CG+ ++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI
Sbjct: 7 RTPXHILCCECGVAISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWI 66
Query: 72 KAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL VQKEV+NGAIL+Q
Sbjct: 67 QCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQV 126
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ + +RI
Sbjct: 127 FVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMSQNTLRI 185
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DF++ ++ HA K VEF+ P R + ++L+S D +N +NYK TFSVEI P
Sbjct: 186 KEIHDGLDFYYSSKQHAQKMVEFLQCTVPWRYKASQRLISQDIHNNTYNYKSTFSVEIVP 245
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC+++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D + +W F SL
Sbjct: 246 ICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPDTLQVADIDGNTFWSHPFNSLC 305
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
+QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGH
Sbjct: 306 HPKQLEEFIVMECSIVRDLKRKAGAGMVSKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGH 364
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
LLNPGD LG+DL + N ND ++K K +P+ +LIKKSY+ KR + R+W+LK L
Sbjct: 365 LLNPGDLVLGFDLANCNLNDEHVNKMKSDRVPDVVLIKKSYDRT---KRQRRRNWRLKEL 421
Query: 426 DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
E ++ TD E ++Y++FL DLEE+ +R NI++YR+
Sbjct: 422 ARERENMD--TDDE---RQYQDFLEDLEEDEAIRKNINIYRD 458
>gi|158294075|ref|XP_315383.4| AGAP005375-PA [Anopheles gambiae str. PEST]
gi|157015396|gb|EAA11292.5| AGAP005375-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/506 (43%), Positives = 329/506 (65%), Gaps = 23/506 (4%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +LCC+CG+P+ PNA+NMCV CLRS VDITE + K +I C C+ YL PP W++
Sbjct: 18 AVNKILCCECGVPIEPNASNMCVPCLRSHVDITENIPKQAVIFFCRNCERYLNPPNEWVQ 77
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
LESKELL+ C+KRL+ L +V+LV+A F+WTEPHSKRIKVKL V EV++ +L+Q +V
Sbjct: 78 CTLESKELLSLCLKRLQGLRQVKLVDAGFVWTEPHSKRIKVKLTVHGEVMSDVVLQQVFV 137
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VE+ + MCD C R +A D W VQ+RQ +R+T FYLEQ+ILKH A + I
Sbjct: 138 VEFTVNNQMCDDCHRTEAK-DFWRCMVQVRQKAVNRKTLFYLEQMILKHKAHENTLGIKP 196
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ +HA K V+F+ V PV+ + K+L+SHD SN++NYKY++++++ P+
Sbjct: 197 NTGGLDFFYATDAHARKMVDFMQAVLPVKVTNSKKLISHDIHSNSYNYKYSYAIDVVPVS 256
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
+ L+CL ++ LG++ P+ + KV NSI L+DP T + + +W+S F+++
Sbjct: 257 KGSLVCLSKRLTQQLGHIAPVCLVSKVANSIHLIDPQTAQMAEVQNMAFWKSPFEAICNP 316
Query: 313 RQLVEYIVLDVEVVSSEVNVG-------GSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
+Q+VE++V+DVE++ ++ LAD V + S+ G N+ +++HLG+
Sbjct: 317 KQMVEFVVMDVEIIRENQRKTFPGQGPVSHRHTLADVWVVKSSELGINENTIHVKSHLGN 376
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
LL PGDY LGYDL AN N+ + +K +P+ +LIKKSY +K +RK+S R+WKLK L
Sbjct: 377 LLKPGDYVLGYDLREANVNNADYEKLNADTVPDVLLIKKSY-DKTVRKQS--RNWKLKHL 433
Query: 426 DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVP 485
+ E+ TD E EY EFL DLEE+PELR N++++++K+ Q ++ T+ D P
Sbjct: 434 NEEI---VVDTDIE---NEYNEFLEDLEEDPELRQNVNIFKDKNKQ--QIPVDTNDMDDP 485
Query: 486 SVP---LDELLADLDLKSDDGEGDDS 508
SVP L+E+L DL L+ D+ GD S
Sbjct: 486 SVPRITLEEMLDDLVLE-DEEMGDAS 510
>gi|403373763|gb|EJY86806.1| NMD protein affecting ribosome stability and mRNA decay [Oxytricha
trifallax]
Length = 660
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/487 (46%), Positives = 318/487 (65%), Gaps = 31/487 (6%)
Query: 8 FTVPQ-TVGSVL-----------CCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIIS 55
F++ Q T GSVL CC CGI M PN +N C+ CL+S +D+TEG+ K + +S
Sbjct: 41 FSMNQSTTGSVLDPSIFAAHKVRCCMCGIMMLPNESNTCINCLKSSIDVTEGITKSINLS 100
Query: 56 HCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKL 115
HC EC+ YL+PP W A+LES ELL+ C+K +K L RV+L++A F++TEPHS+R+KVKL
Sbjct: 101 HCRECNRYLRPP--WQSAELESPELLSLCLKNIKGLKRVKLIDAGFLYTEPHSRRLKVKL 158
Query: 116 KVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLE 175
VQKEVLNG +L+QS+VVE+V + CD C + P W+A Q+RQ VTH+RTF +LE
Sbjct: 159 TVQKEVLNGTLLQQSFVVEFVVNNLQCDDCKKTYT-PHTWIAQAQIRQRVTHKRTFLFLE 217
Query: 176 QLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKS 235
QLI+KH+AA +++ I +M G+DF F NRSHA + V+F+ P + + KQLVSHD ++
Sbjct: 218 QLIIKHNAAEKSLGIKEMHDGLDFQFKNRSHANRLVDFISGTVPTKVKTAKQLVSHDLRN 277
Query: 236 NNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCF 295
N F++KYTFSVEI+PICR+DL L ++ LG +GPLV+ K++ + ++D FT++
Sbjct: 278 NVFSFKYTFSVEIAPICRDDLAVLSKPLSQLLGGIGPLVLVYKISTFVHIVDVFTMQTYE 337
Query: 296 LDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNV----GGSKYVLADAQVARVSDFG 351
+D YW+ F +L +L E++VL++E +VN+ K+ + +VAR SDFG
Sbjct: 338 IDQAMYWKHEFSALCGRDRLTEFVVLNIENTDFDVNISRAAAKQKFKMVQVEVARKSDFG 397
Query: 352 KNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRL 411
ND F I THLG LN D LG+DL N N++E + LP +L++K+Y R
Sbjct: 398 NNDRTFIINTHLGETLNYNDTVLGFDLEMINLNELEELELTK-TLPSVVLVRKTY--PRF 454
Query: 412 RKRSKPRSWKLKSLDME--VDDS-------KGRTDQEKMNKEYEEFLRDLEENPELRFNI 462
RKR K R WKLK L+ + D++ K +TDQ K K+Y+ FL+D+EE+PELR I
Sbjct: 455 RKRQKHRLWKLKHLEKQGLTDENIHGHKKKKEKTDQGKHQKDYDMFLQDIEEDPELRPQI 514
Query: 463 SLYRNKD 469
LYRN D
Sbjct: 515 DLYRNDD 521
>gi|393243763|gb|EJD51277.1| RNA binding protein [Auricularia delicata TFB-10046 SS5]
Length = 543
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 243/545 (44%), Positives = 329/545 (60%), Gaps = 58/545 (10%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
+ P V VLC CG P+ PN+AN+CVACLR+ VDITEG+ K +S C C+ +L PP
Sbjct: 3 YVAPTPVHRVLCADCGTPIEPNSANLCVACLRNTVDITEGIPKQSALSFCKNCNRFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
W A+ ES+ELL C+K+LK LN+VRLV+A F+WTEPHSKR+KVKL +QKEV G IL
Sbjct: 63 SAWTIAEPESRELLALCLKKLKGLNKVRLVDAAFVWTEPHSKRLKVKLTIQKEVFAGTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VVEY+ Q C C+R+ A + W A VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 123 QQVFVVEYIVQHGQCPDCARLAAK-NTWKALVQVRQKVAHKRTFLFLEQLILKHGAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ RSHA+K VEF+ V P R++ +QL+ HD SN NYK+T+SVE
Sbjct: 182 ISVKEVKDGLDFFYAQRSHAIKMVEFLAGVVPTRTKGSEQLLGHDTHSNVSNYKFTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I+P+C++DL+CLP +A SL N+ PL +C ++ NSI LLDP TL+ L A Y+RS
Sbjct: 242 IAPLCKDDLVCLPMPIARSLSNIHPLTVCTRIGNSIHLLDPSTLQSAELSAQVYFRSPVD 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF----------------- 350
L L E+ +LD+E + K+VLADAQVA S F
Sbjct: 302 PLANISSLREFTILDIE----PTGLTRGKWVLADAQVALGSAFRSHAAAGAEDDYMMDDG 357
Query: 351 -GKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGL------VLPETILIK 403
D I+ RTHLG +L PGD ALGY L AN N D + L +P+ +L+K
Sbjct: 358 EAGGDGIYHTRTHLGGILQPGDTALGYFLTRANYNS---DAFSALQSSASGTIPDIVLVK 414
Query: 404 KSYEEKRLRKRSKPRSWKLKSLDMEVDDSK--------GRTDQEKMNKEYEEFLRDLEEN 455
K+Y + RK+++ R W+LKS+ E D+ G DQ+K++++YE FLRDLEE+
Sbjct: 415 KTYPAR--RKKTRARQWRLKSIAKEAGDTGAEGVVGRMGGRDQKKVDEDYEIFLRDLEED 472
Query: 456 PELRFNISLYRNKDYQPSEMA---------------SVTDGEDVPSVPLDELLADLD-LK 499
E+R ++LY+ K +P A + D D P V LDELL D++ L
Sbjct: 473 VEMRAAVNLYKAKPQKPKASAMDVDDAPAPSEDGTGTEADEPDFPDVKLDELLEDMENLG 532
Query: 500 SDDGE 504
DD E
Sbjct: 533 IDDDE 537
>gi|389748034|gb|EIM89212.1| NMD3-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 581
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/488 (45%), Positives = 306/488 (62%), Gaps = 33/488 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+CVACLR+ VDITEG+ K IS+C C+ +L PP
Sbjct: 3 FVPGPAVHRVLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQASISYCRNCERHLAPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
W+ A+ ES+ELL C+K+LK L++VRL A FIWTEPHSKR++V L +QKEVL IL
Sbjct: 63 AQWVIARPESQELLAICLKKLKGLSKVRLTEAHFIWTEPHSKRLRVSLTIQKEVLTNTIL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ + +EY+ Q C C+++ A + W A VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 123 EQIFEIEYLVQYGQCPDCTKLAAK-NTWKALVQVRQKVPHKRTFLYLEQLILKHGAQKDT 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DF++ RSHA+K VEF+G V P+R++ ++L+S D ++ NYK+T+SVE
Sbjct: 182 ISVKEVKDGLDFYYSQRSHALKMVEFLGSVVPIRTKSSERLLSTDTHTSTANYKFTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC++DL+C+P K A +GN+ PL IC +V NS+ ++DP TL+ + + YWR+ F
Sbjct: 242 IVPICKDDLVCIPLKQARQMGNINPLTICTRVGNSLHVIDPNTLQSSEITSPVYWRTPFD 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDT------------ 355
SL +L E+ VLDVE + V G K+VLADAQVA F T
Sbjct: 302 SLAGISELKEFTVLDVEPMHGAGAVKG-KWVLADAQVALSGAFKSTGTYEDDGMMDYETS 360
Query: 356 -----IFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKR 410
IF RTHLG +L PGD +GY L N N E K +P+ IL+KK+Y +
Sbjct: 361 ASANQIFHTRTHLGAILQPGDSVMGYFLSHTNFNSEEFTKLPQDRIPDIILVKKAYPNR- 419
Query: 411 LRKRSKPRSWKLKSL------------DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPEL 458
RK++K R+WKL+S+ V G DQ+K+ ++YE FLRDLEE+PE+
Sbjct: 420 -RKKTKTRNWKLRSIGKEAGEEGETGGGRGVIGRMGGRDQKKVEQDYELFLRDLEEDPEM 478
Query: 459 RFNISLYR 466
R ++LY+
Sbjct: 479 RSAVNLYK 486
>gi|320037688|gb|EFW19625.1| nonsense-mediated mRNA decay protein [Coccidioides posadasii str.
Silveira]
Length = 526
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 328/520 (63%), Gaps = 32/520 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ A +C C++ +DI+EG+Q+ + C +C+ +LQ
Sbjct: 16 FQPQQQAATILCCNCGAPIDGTTAAGALCEDCIKLTIDISEGIQREATLHMCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A LES+ELL C+++L+ L++VR+++A F+WTEPHSKRIKVK+ +Q+EV G
Sbjct: 76 PPSQWISAALESRELLALCLRKLRGLSKVRIIDASFLWTEPHSKRIKVKITIQQEVFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q++ VEYV C C++ + W A+VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 136 ILQQTFEVEYVVASQQCPECAK-SYTANTWRASVQVRQKVPHKRTFLHLEQLILKHGAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I ++ G+DFFF R+HA + V+F+ VAPVR + +QL+S D ++ +YK +FS
Sbjct: 195 DTINIKEVKDGLDFFFSQRNHAERLVDFLSSVAPVRVKKSQQLISMDVHTSTKSYKISFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
VE+ PIC++DL+ LP K+A SLGN+ PL +C +V S+ LLDP TL+ + + YWRS
Sbjct: 255 VELIPICKDDLVALPIKLAKSLGNISPLTLCYRVGTSVNLLDPNTLQIADIPSPIYWRSP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
FK+L ++LVE+IV+D+E + ++ LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FKNLADVQELVEFIVMDIEPIGH----SSGRFYLAEATVARASDLGVNDTTYFTRTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+PGD +GY L N ND +E +P+ +L+KK Y K K+ K R+W
Sbjct: 371 VLHPGDSVMGYHLTGTNFNDENFEALEQSGTYSSTIPDVVLVKKYYARK---KKHKSRNW 427
Query: 421 KLKSLDMEVDD----SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
+LK LD EV+D S + Q+++ +++E FLRD+EE+ ELR ++LY+ + +P A
Sbjct: 428 RLKRLDREVEDHPSASSRQQGQDRLEEDFEMFLRDIEEDTELRSTLALYKAQQ-KPRAHA 486
Query: 477 SVTDGED-----------VPSVPLDELLADL-DLKSDDGE 504
DG + VP + +DELL + +L +DG+
Sbjct: 487 DQMDGVEMNVDDDSDDDDVPKINMDELLDEFEELNMEDGQ 526
>gi|363752964|ref|XP_003646698.1| hypothetical protein Ecym_5097 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890334|gb|AET39881.1| hypothetical protein Ecym_5097 [Eremothecium cymbalariae
DBVPG#7215]
Length = 509
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/493 (44%), Positives = 314/493 (63%), Gaps = 20/493 (4%)
Query: 15 GSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKA 73
+VLCC CG+PM MC C++ VDITEG+ + +S C C+ +LQPP WI+A
Sbjct: 16 ATVLCCNCGVPMDGSTGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPGQWIRA 75
Query: 74 QLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI++KL VQ E + I++Q++ V
Sbjct: 76 ELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRIKLTVQGEAMANTIIQQTFEV 135
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
EY+ C C+R + W A +Q+RQ V H+RTF YLEQLILKH+A + I++
Sbjct: 136 EYIVVAMQCPDCAR-SYTANTWRANIQIRQKVPHKRTFLYLEQLILKHNAHVDTVSISEA 194
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++HAVK ++F+ V PV+++ ++L+S D + YK+++SVEI PICR
Sbjct: 195 KDGLDFYYSQKNHAVKMLDFLNSVVPVKTKKSEELISQDTHTGASTYKFSYSVEIVPICR 254
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
+DL+ LP K+A S+GN+ VIC KVTN++ LDP TL+ L A YWR+ F SL
Sbjct: 255 DDLVVLPKKLAKSMGNISQFVICSKVTNALQFLDPQTLQTAELTASVYWRNPFMSLADVS 314
Query: 314 QLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYA 373
QL+E+IVL+VE V G K VLAD VAR SD G ND + +R+HLG + +PGD
Sbjct: 315 QLIEFIVLEVEPTGY---VNG-KRVLADITVARASDMGVNDQTYYVRSHLGAICHPGDSV 370
Query: 374 LGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDD-- 431
+GY + ++N N D +P+ +L+KK Y +RK K R WKLK + E D
Sbjct: 371 MGYFIANSNYNSDLFDSLNFDRIPDIVLVKKQY----IRKTRKNRHWKLKRMAKEHKDID 426
Query: 432 ------SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN-KDYQPSEMASVTDGEDV 484
+ + D E+ ++YE FL++LEE+ E+R I+LY+N K Q EMA D ED
Sbjct: 427 ASNDYSRQQKVDMERAERDYELFLQELEEDEEMRQTINLYKNQKPVQEEEMADSED-EDA 485
Query: 485 PSVPLDELLADLD 497
P + +DELL +LD
Sbjct: 486 PQINIDELLDELD 498
>gi|50302583|ref|XP_451227.1| 60S ribosomal export protein NMD3 [Kluyveromyces lactis NRRL
Y-1140]
gi|49640358|emb|CAH02815.1| KLLA0A05159p [Kluyveromyces lactis]
Length = 514
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/494 (45%), Positives = 311/494 (62%), Gaps = 20/494 (4%)
Query: 15 GSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKA 73
+VLCC CG+PM + MC C++ VDITEG+ + +S C C+ +LQPP WI+A
Sbjct: 16 ATVLCCSCGVPMDGSSGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPSQWIRA 75
Query: 74 QLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI+VKL VQ E + I++Q++ V
Sbjct: 76 SLESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIIQQTFEV 135
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
EYV C C+R + W A VQ+RQ V H+RTF YLEQLILKH+A I I++
Sbjct: 136 EYVVIAMQCPDCAR-SYTTNTWRANVQIRQKVPHKRTFLYLEQLILKHNAHVDTISISEA 194
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DFF+ ++HA K ++F+ V P++ + ++L+S D + + YK+TFSVEI PICR
Sbjct: 195 KDGLDFFYSQKNHAAKMLDFLNAVVPIKCKKSEELISQDIHTGSSTYKFTFSVEIVPICR 254
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
+DL+ LP K+A SLGN+ VIC KV+NS+ LDP TL+ C L A YWR F +L
Sbjct: 255 DDLVVLPKKLAKSLGNISQFVICSKVSNSLQFLDPTTLQTCDLTAPMYWREPFSALAEVS 314
Query: 314 QLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYA 373
QLVE+I+LDVE N K+VLAD VAR SD G ND ++ +RTHLG +++PGD
Sbjct: 315 QLVEFIILDVEPTGQVRN----KWVLADVTVARSSDLGSNDQVYYVRTHLGGIIHPGDSV 370
Query: 374 LGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSK 433
+GY + ++N N D +P+ +LIKK Y+ RK K R WKLK + E D +
Sbjct: 371 MGYFIANSNYNSELFDGLNIDYVPDIVLIKKLYQ----RKTKKNRKWKLKRMAKEHKDIE 426
Query: 434 GRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYR-NKDYQPSEMASVTDGED 483
D E+ ++YE FL++LEE+ E+R I+LY+ NK + + ED
Sbjct: 427 ASQDYTSRQQKQEMERAERDYEIFLQELEEDEEMRQTINLYKSNKPAEHEGEMEEDEDED 486
Query: 484 VPSVPLDELLADLD 497
P + +DELL +LD
Sbjct: 487 APQIDIDELLDELD 500
>gi|444318629|ref|XP_004179972.1| hypothetical protein TBLA_0C06600 [Tetrapisispora blattae CBS 6284]
gi|387513013|emb|CCH60453.1| hypothetical protein TBLA_0C06600 [Tetrapisispora blattae CBS 6284]
Length = 525
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/507 (44%), Positives = 325/507 (64%), Gaps = 26/507 (5%)
Query: 14 VGSVLCCKCGIPMAPNAA-NMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG P+ +A MC C++ VDITEG+ + +S C C+ +LQPP WI+
Sbjct: 21 VATVLCCNCGTPIDGSAGLVMCYDCIKMTVDITEGIPREANVSFCRNCERFLQPPGQWIR 80
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI+VKL VQ E + I++Q++
Sbjct: 81 AELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIIQQTFE 140
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C+R + W A VQ+RQ V H+RTF YLEQLILKH+A I IT+
Sbjct: 141 VEYVVVAMQCADCAR-SYTTNTWRATVQIRQKVHHKRTFLYLEQLILKHNAHVDTISITE 199
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HAVK V+F+ V P++++ ++L+S D + + YK+++S+EI+PIC
Sbjct: 200 TKDGLDFFYAQKNHAVKMVDFLNSVVPIKAKKSEELISQDVHTGSSTYKFSYSIEIAPIC 259
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
++DL+ LP K+A SLGN+ VIC KV+N+I LDP TL+ L A YWRS F+SL
Sbjct: 260 KDDLVVLPKKLAKSLGNISQFVICSKVSNTIQFLDPNTLQTGDLSAAVYWRSPFQSLADV 319
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QL+E+IVLDVE + V G + VLAD VAR D G ND ++ IRTHLG +++ GD
Sbjct: 320 SQLIEFIVLDVEPTGA---VKG-RNVLADVTVARSCDLGVNDQVYYIRTHLGGIIHAGDT 375
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDS 432
+GY + ++N N D K +P+ +L+KK Y+ RK K R+WKLK + E +
Sbjct: 376 VMGYFIANSNYNSELFDNLKYDYVPDVVLVKKLYQ----RKTRKNRNWKLKRMAKEHKEI 431
Query: 433 KG---------RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD---YQPSEMASVTD 480
+ + D E+ ++YE FL++LEE+ ELR +I+LY++ Q +E A
Sbjct: 432 EASQDYSSRVQKQDMERAERDYELFLQELEEDAELRQSINLYKSNKPAANQGTETAQNEQ 491
Query: 481 GE---DVPSVPLDELLADL-DLKSDDG 503
E D P + +DELL +L D+ +DG
Sbjct: 492 DEQDADAPEINIDELLDELDDMTLEDG 518
>gi|303314705|ref|XP_003067361.1| 60S ribosomal export protein NMD3 [Coccidioides posadasii C735
delta SOWgp]
gi|240107029|gb|EER25216.1| Nonsense-mediated mRNA decay protein 3, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 526
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 328/520 (63%), Gaps = 32/520 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ A +C C++ +DI+EG+Q+ + C +C+ +LQ
Sbjct: 16 FQPQQQAATILCCNCGAPIDGTTAAGALCEDCIKLTIDISEGIQREATLHMCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A LES+ELL C+++L+ L++VR+++A F+WTEPHSKRIKVK+ +Q+EV G
Sbjct: 76 PPSQWISAALESRELLALCLRKLRGLSKVRIIDASFLWTEPHSKRIKVKITIQQEVFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q++ VEYV C C++ + W A+VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 136 ILQQTFEVEYVVASQQCPECAK-SYTANTWRASVQVRQKVPHKRTFLHLEQLILKHGAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I ++ G+DFFF R+HA + V+F+ VAPVR + +QL+S D ++ +YK +FS
Sbjct: 195 DTINIKEVKDGLDFFFSQRNHAERLVDFLSSVAPVRVKKSQQLISMDVHTSTKSYKISFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
VE+ PIC++DL+ LP K+A SLGN+ PL +C +V S+ LLDP TL+ + + YWRS
Sbjct: 255 VELIPICKDDLVALPIKLAKSLGNISPLTLCYRVGTSVNLLDPNTLQIADIPSPIYWRSP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
FK+L ++LVE+IV+D+E + ++ LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FKNLADVQELVEFIVMDIEPIGH----SSGRFYLAEATVARASDLGVNDTTYFTRTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+PGD +GY L N ND +E +P+ +L+KK Y K K+ K R+W
Sbjct: 371 VLHPGDSVMGYHLTGTNFNDENFEALEQSGTYSSTIPDVVLVKKYYARK---KKHKSRNW 427
Query: 421 KLKSLDMEVDD----SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
+LK LD EV+D S + Q+++ +++E FLRD+EE+ ELR ++LY+ + +P A
Sbjct: 428 RLKRLDREVEDHPSASSRQQGQDRLEEDFEMFLRDIEEDTELRSTLALYKAQQ-KPRGHA 486
Query: 477 SVTDGED-----------VPSVPLDELLADL-DLKSDDGE 504
DG + VP + +DELL + +L +DG+
Sbjct: 487 DQMDGVEMNVDDDSDDDDVPKINMDELLDEFEELNMEDGQ 526
>gi|320582188|gb|EFW96406.1| hypothetical protein HPODL_2063 [Ogataea parapolymorpha DL-1]
Length = 505
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/496 (44%), Positives = 319/496 (64%), Gaps = 18/496 (3%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q +VLCC CG+PM MC C++ VDIT G+ + IS C C+ +LQPP+ W
Sbjct: 13 QPQATVLCCNCGVPMDGSTGLVMCYDCIKLNVDITAGIPREANISFCRNCERFLQPPQQW 72
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
++A+LES+ELL C++RLK LN+VRL++A FIWTEPHS+RI++KL VQ E L I++QS
Sbjct: 73 MRAELESRELLAICLRRLKGLNKVRLIDASFIWTEPHSRRIRIKLTVQGEALTNTIIQQS 132
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEYV C C++ + W AAVQ+RQ V H+RTF YLEQLILKH+A I I
Sbjct: 133 FEVEYVVVAMQCPDCAK-SYTANTWRAAVQIRQKVQHKRTFLYLEQLILKHNAHMDTISI 191
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DF++ R+HA K ++F+ V P++S+ ++L+S D S YK+TFSVEI P
Sbjct: 192 KESKDGLDFYYSQRNHAAKMIDFLNSVVPIKSKKSEELISQDIHSGTSQYKFTFSVEIVP 251
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A S+G++ LV+C KV+N + +DP +L+ L A +WR+ F +L
Sbjct: 252 ICKDDLVVLPKKLAKSMGDMSRLVLCSKVSNMVQFIDPVSLQTGDLLAQVFWRTPFVALA 311
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
Q+VE+IVLDVE +++LAD VAR SD G ND + +R+HLG +L+PG
Sbjct: 312 DVTQMVEFIVLDVEPTGQR----NGRWLLADVTVARASDMGSNDQEYYVRSHLGGILHPG 367
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME-- 428
D ALGY L ++N N+ D+ +P+ +L+KK Y R KR K R+WKLK + E
Sbjct: 368 DSALGYFLTNSNFNNELFDELNTDTIPDVVLVKKHY--VRSNKRMKHRNWKLKRMANEHK 425
Query: 429 -------VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDG 481
VD + R + EK ++YE FL++LEE+ ELR ++LYR ++ +P E + +
Sbjct: 426 DLVADEIVDSRQARQEAEKAERDYELFLQELEEDQELRKTVNLYRAEN-KPVEEDDMEEE 484
Query: 482 EDVPSVPLDELLADLD 497
+D P + +DELL +LD
Sbjct: 485 DDAPQIDIDELLDELD 500
>gi|342319881|gb|EGU11826.1| RNA binding protein [Rhodotorula glutinis ATCC 204091]
Length = 535
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/522 (42%), Positives = 328/522 (62%), Gaps = 30/522 (5%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
VLC CG P+ PN AN+CV CLR+ VDITEG+ K +S C CD YL PP W + LE
Sbjct: 17 VLCADCGTPIQPNGANLCVNCLRNSVDITEGIPKQTTLSFCRGCDRYLSPPNQWTRCDLE 76
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+++LK L++VRL++A FIWTEPHS+R+KVKL +QKEV + IL+Q + VEYV
Sbjct: 77 SRELLAICLRKLKGLSKVRLIDAGFIWTEPHSRRVKVKLTIQKEVFSSTILQQIFEVEYV 136
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q C C+R+ A + W A VQ+RQ V H+RTF YLEQLIL+H+A +++ ++ G
Sbjct: 137 VQGAQCQDCTRLAAK-NTWRAMVQVRQKVDHKRTFLYLEQLILRHNADRDTLQVAEVKDG 195
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
++FF+ ++ HA+K V+F+ VAPVR++ +QL+S D ++ N K T+SVEI PIC++DL
Sbjct: 196 LNFFYASKQHALKMVDFLNGVAPVRTKTSEQLISLDTQNATTNKKETYSVEIVPICKDDL 255
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+C+P K A SL N+G L +C +V N + L+DP TL + QYWR+ F L+ Q V
Sbjct: 256 VCMPAKTARSLSNIGQLAVCHRVGNQVYLIDPLTLHLADISGGQYWRAPFPPLVDITQAV 315
Query: 317 EYIVLDVEVVSSEVNVG-GSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALG 375
E+IVLD+E S G +++LADAQV+ + +DTIF RTHLG +L PGD LG
Sbjct: 316 EFIVLDIEPTSHPPKTAKGGRFLLADAQVSPMGGTMSSDTIFHTRTHLGSVLKPGDTVLG 375
Query: 376 YDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSK-- 433
Y L ++N N+ + +PE +LI+K+Y ++ KR+ R+WKL+S+ +V
Sbjct: 376 YMLSNSNFNNDAWETMNQDRVPEVVLIRKTYPARKKAKRA--RNWKLRSMVKQVGGEDLG 433
Query: 434 -------GR------------TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE 474
GR DQ K ++YE FL+DLE++ E+R I L+++ + ++
Sbjct: 434 DAATIGFGRERAEPKSKRSAIADQAKAEQDYERFLQDLEDDDEMRKEIHLFKDPNAAQAK 493
Query: 475 MASV-----TDGEDVPSVPLDELLADLDLKSDDGEGDDSMRE 511
++ D E++P + +DELL D + + +G+ + + E
Sbjct: 494 ADAMTDDTDEDEEELPEINVDELLDDFEQMAIEGDEEQAGEE 535
>gi|426342766|ref|XP_004038005.1| PREDICTED: 60S ribosomal export protein NMD3 [Gorilla gorilla
gorilla]
Length = 493
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/502 (45%), Positives = 323/502 (64%), Gaps = 30/502 (5%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+ + L +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFFPFFVTLQIFILQ----------VLIKKSYDRT---KRQRRRNWKLKELARE 417
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 418 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 469
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 470 LAEMLEDLHISQDATGEEGASM 491
>gi|367004052|ref|XP_003686759.1| 60S ribosomal export protein NMD3 [Tetrapisispora phaffii CBS 4417]
gi|357525061|emb|CCE64325.1| hypothetical protein TPHA_0H01170 [Tetrapisispora phaffii CBS 4417]
Length = 526
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/508 (43%), Positives = 322/508 (63%), Gaps = 21/508 (4%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG P+ MC C++ VDITEG+ + +S C C+ +LQPP WI+
Sbjct: 19 VATVLCCNCGTPIDGSQGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPGQWIR 78
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI+VKL VQ E + I++Q++
Sbjct: 79 AELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIIQQTFE 138
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEY+ C C+R + W A VQ+RQ V H+RTF YLEQLILKH+A I IT+
Sbjct: 139 VEYIVVAMQCADCAR-SYTTNTWRATVQIRQKVAHKRTFLYLEQLILKHNAHIDTISITE 197
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HA K ++F+ V P++ + ++L+S D + + YK++FSVEI P+C
Sbjct: 198 TKDGLDFFYSQKNHAAKMIDFLNSVVPIKCKKSEELISQDVHTGSSTYKFSFSVEIVPVC 257
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A SLG++ V+C K++NS+ LDP TL+ L A+ YWR+ F +L +
Sbjct: 258 RDDLVVLPKKLAKSLGDISQFVLCSKISNSVQFLDPTTLQTADLSANVYWRTPFNTLADA 317
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QLVE+IVLDVE + V K VLAD VAR +D G ND + R+HLG + + GD
Sbjct: 318 SQLVEFIVLDVE----PIGVTKGKKVLADITVARATDLGVNDLTYYTRSHLGAICHAGDT 373
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDS 432
+GY + ++N N + K +P+ +L+KK Y+ RK K R+WKLK + E D
Sbjct: 374 VMGYYVANSNYNSDLFETLKFEYVPDVVLVKKLYQ----RKSRKNRNWKLKRMAKEHKDI 429
Query: 433 KG---------RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE- 482
+ + D E+ ++YE FL++LEE+ ELR I+LY+++ + E + +
Sbjct: 430 EASQDYSSRAQKQDIERAERDYELFLQELEEDQELRQTINLYKSQKQEQEEHEMEEEEDA 489
Query: 483 DVPSVPLDELLADLD-LKSDDGEGDDSM 509
D P++ +DELL +LD + DD +GD+ M
Sbjct: 490 DAPAIDIDELLDELDEMTLDDNQGDEGM 517
>gi|241958934|ref|XP_002422186.1| 60S ribosomal export protein NMD3 [Candida dubliniensis CD36]
gi|223645531|emb|CAX40190.1| large ribosomal subunit nuclear export factor, putative [Candida
dubliniensis CD36]
Length = 519
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/497 (45%), Positives = 321/497 (64%), Gaps = 18/497 (3%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG+PM + MC C++ VDITEG+ + +S C C+ +LQPP WI+
Sbjct: 18 VATVLCCNCGVPMDGSSGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWIR 77
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI+VK+ VQ E + I++Q++
Sbjct: 78 AELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKITVQGEAMANTIVQQTFE 137
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH+A + I +
Sbjct: 138 VEYVVIAMQCPDCAK-SYTTNTWRATVQIRQKVPHKRTFLYLEQLILKHNAHVDTVSIQE 196
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HA K V+F+ VAP++ + ++LVS D S + +YK+++SVEI+PIC
Sbjct: 197 TKDGLDFFYAQKNHAAKMVDFLQAVAPIKVKKSEELVSMDIHSGSSSYKFSYSVEIAPIC 256
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A S+GN+ LV+C K+TNSI +DP TL+ L + YWR F SLL +
Sbjct: 257 RDDLVVLPKKLAHSMGNISRLVLCNKITNSIQFMDPNTLQTADLSSPVYWRFPFPSLLDA 316
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QLVE+IVLDVE ++ G KYVLAD +V+R SD G ND F +RTHLG +L+PGD
Sbjct: 317 TQLVEFIVLDVEPTG---DIRG-KYVLADIEVSRASDLGSNDQTFYVRTHLGGILHPGDS 372
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD----ME 428
LGY L + N N D PE +++KK Y K + +++ K + + +
Sbjct: 373 CLGYYLTNTNINSELWDTLDTDNTPEVVIVKKHYARKSKKSKNRKWKLKRMAREHNDIVA 432
Query: 429 VDDSK-GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS---EMASVTDG--- 481
DDS+ R +QE+ ++YE FL++LEE+ ELR I+LY+ D QP + DG
Sbjct: 433 NDDSRQARQEQERAERDYELFLQELEEDDELRQTINLYKAGDNQPQVSRNHDDMNDGEED 492
Query: 482 -EDVPSVPLDELLADLD 497
ED P + +DELL +LD
Sbjct: 493 DEDAPEIGIDELLDELD 509
>gi|344307154|ref|XP_003422247.1| PREDICTED: 60S ribosomal export protein NMD3-like [Loxodonta
africana]
Length = 504
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/502 (46%), Positives = 331/502 (65%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+ ++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVLISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K+LK L +VRLV+A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q ++V
Sbjct: 73 LESRELLALCLKKLKAPLAKVRLVDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFMV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +R+ ++
Sbjct: 133 DYVIQSQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRVKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNMYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VTN+I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTNAIHLIDPNTLQVADIDGSTFWSHPFNSLCHLK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E++V++ +V + G+ K++L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFLVMECSIVRNVKRSAGAGMISKKHILGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L +
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRI---KRQRRRNWKLKELARD 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
+G D K ++YE+FL DLEE+ +R NI++YR+ P E + D E P +
Sbjct: 428 ----RGNMD-TKDERQYEDFLEDLEEDEAIRKNINIYRDSTI-PVEGDA--DDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>gi|392588879|gb|EIW78210.1| NMD3-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 558
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/483 (46%), Positives = 301/483 (62%), Gaps = 28/483 (5%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F V VLC CG P+ PN+AN+CVACLR+ VDITEG+ K +S C C+ +L PP
Sbjct: 3 FVPAPAVHRVLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQSSVSFCRNCERFLSPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+ W Q ES+ELL C+K+LK LN+VRL +A FIWTEPHSKR++V L +QKEVL +L
Sbjct: 63 QAWTLVQPESQELLAICLKKLKGLNKVRLTDAHFIWTEPHSKRLRVSLTIQKEVLTNTVL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
EQ + VEY+ Q C C+R+ A + W A VQ+RQ V+H+RTF +LEQLILKH A
Sbjct: 123 EQVFEVEYLVQHGQCPDCARLAAK-NTWKALVQVRQKVSHKRTFLFLEQLILKHSAQKET 181
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I + ++ G+DFF+ RSHA+K VEF+ P RS+ +QL+S D S NYK+T+SVE
Sbjct: 182 ISVKEVRDGLDFFYSQRSHAIKMVEFLAGGVPTRSKGSEQLLSTDTHSGTANYKFTYSVE 241
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I+PIC++DL+C+PPK A L N+ PL IC +V NS+ L DP TL+ + A YWR+ F
Sbjct: 242 IAPICKDDLVCIPPKQAKQLSNISPLTICTRVGNSLQLTDPATLQSVEVTAAVYWRAPFA 301
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSD---------FGKNDTIFS 358
SL LVE+ VLD+E S G K+VLADAQ D + IF
Sbjct: 302 SLANVTDLVEFTVLDIE--PSGPTRG--KWVLADAQTHGGDDEDMLMDYEGSAYANQIFH 357
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPR 418
RTHLG +L PGD +GY L +AN N + +P+ +L+KK+Y + RK+++ R
Sbjct: 358 TRTHLGAILQPGDAVMGYHLTNANYNSDDFAAVSADRVPDIVLVKKAYPNR--RKKNRTR 415
Query: 419 SWKLKSL------------DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYR 466
WKL+S+ V G DQ+K+ ++YE FLR+LEE+PELR ++LY+
Sbjct: 416 EWKLRSMAKEEGEEGETGAGRGVVGRMGGRDQKKVEEDYELFLRELEEDPELRGAVNLYK 475
Query: 467 NKD 469
KD
Sbjct: 476 AKD 478
>gi|156844183|ref|XP_001645155.1| hypothetical protein Kpol_1062p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156115813|gb|EDO17297.1| hypothetical protein Kpol_1062p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 522
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/512 (43%), Positives = 324/512 (63%), Gaps = 21/512 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q V +VLCC CG P+ MC C++ VDITEG+ + +S C C+ +LQPP W
Sbjct: 18 QNVATVLCCNCGAPIDGSTGLVMCYDCIKMTVDITEGIPREANVSFCRNCERFLQPPGQW 77
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI+VKL VQ E + I++Q+
Sbjct: 78 IRAELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMVNTIIQQT 137
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ C C+R + W A VQ+RQ V H+RTF YLEQLILKH+A I I
Sbjct: 138 FEVEYIVIAMQCADCAR-SYTTNTWRATVQIRQKVPHKRTFLYLEQLILKHNAHVDTISI 196
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
T+ G+DFF+ ++HAVK ++F+ V P++++ ++L+S D S + YK+++S+EI P
Sbjct: 197 TEAKDGLDFFYAQKNHAVKMLDFLNSVVPIKAKKSEELISQDVHSGSATYKFSYSIEIVP 256
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
ICR+DL+ LP K+A SL N+ V+C KV+N++ +DP TL+ L A YWR+SF+ L
Sbjct: 257 ICRDDLVVLPKKLAKSLSNISQFVLCTKVSNTLQFMDPTTLQTVDLSAPVYWRNSFQPLA 316
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE++VLDVE V + K+VLAD VAR +D G ND + +R+HLG L + G
Sbjct: 317 DVSQLVEFMVLDVE----PVGISKGKHVLADITVARSTDLGVNDQTYYVRSHLGALCHSG 372
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME-- 428
D +GY + ++N N D +P+ +++KK Y+ RK K R+WKLK + E
Sbjct: 373 DTVMGYFVANSNYNSDLFDDLNIDHVPDVVIVKKLYQ----RKSRKNRNWKLKRMAKEHK 428
Query: 429 -VDDSKG------RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT-- 479
+D S+ + D E+ ++YE FL++LEE+ ELR ++LY++ + + E +
Sbjct: 429 DIDASQDYSSKSQKQDIERAERDYELFLQELEEDQELRQTVNLYKSSNPENIEEHGMEED 488
Query: 480 DGEDVPSVPLDELLADLDLKSDDGEGDDSMRE 511
+ ED P + +DELL +LD + D G D M E
Sbjct: 489 EDEDAPQIDIDELLDELDEMTLDDNGADEMGE 520
>gi|389611415|dbj|BAM19319.1| nonsense-mediated mRNA decay protein [Papilio polytes]
Length = 491
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/487 (43%), Positives = 312/487 (64%), Gaps = 20/487 (4%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+C P+ PN +NMCVACLR+ VDIT+G+ K + C C+ YLQPP W+ LE
Sbjct: 17 ILCCQCAAPIEPNPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPAEWLVCALE 76
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+KRLK LNRV+L++A F WTEPHSKRIKVKL VQ EV+ GA+L+Q+++VE+V
Sbjct: 77 SRELLALCLKRLKGLNRVKLIDAGFAWTEPHSKRIKVKLTVQGEVMGGAVLQQTFIVEFV 136
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q MCD+C R +A D W A VQ+RQ +R+TF+YLEQLILKH A + I G
Sbjct: 137 IQHQMCDACHRSEAQ-DYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDG 195
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ + A K V+F+ V P++ +H K+L+SHD SN +NYK+T+S+EI P+ ++ +
Sbjct: 196 LDFFYATENTARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYKFTYSIEIVPVSKDSV 255
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLP K+ LG++ P+ + +VT++I L+DP T + C L + YWR F + +QLV
Sbjct: 256 VCLPKKLTHQLGSISPICLVSRVTSTIHLIDPNTGQVCDLSSTVYWRHPFTPICNPKQLV 315
Query: 317 EYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY V+D++++ V +K+V+AD V + S+ G + +THLGH+L P
Sbjct: 316 EYTVMDIDILKEHEKKTFPGQGVVSNKHVIADVWVVKSSELGHDVNPIHTKTHLGHILKP 375
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD LGY+L N ND DK +P+ L+KK Y E+ R+R+ R+WKLK + ++
Sbjct: 376 GDTVLGYNLCDTNVNDANFDKLDKDSIPDVFLVKKYYGERSARRRA--RNWKLKHMADDL 433
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPL 489
+ G + N++Y EFL DLEE+P R NI+++++ P + TD D PS+P
Sbjct: 434 HEGLGSS-----NEDYNEFLDDLEEDPTFRQNINIFKDASRVPID----TDEID-PSLPR 483
Query: 490 DELLADL 496
L D+
Sbjct: 484 ITLADDV 490
>gi|406603759|emb|CCH44784.1| 60S ribosomal export protein [Wickerhamomyces ciferrii]
Length = 512
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/501 (45%), Positives = 315/501 (62%), Gaps = 24/501 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q +VLCC CG+PM MC C++ VDITEG+ + +S C C+ +LQPP+ W
Sbjct: 13 QVAATVLCCNCGVPMDGSTGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPQQW 72
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+ +LES+ELL C++RLK LN+VRL++A FIWTEPHS+RIKVKL VQ E + I++QS
Sbjct: 73 IRCELESRELLALCLRRLKGLNKVRLIDASFIWTEPHSRRIKVKLTVQGEAMANTIVQQS 132
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEYV C C++ + W AAVQ+RQ V+H+RTF YLEQLIL+H A I I
Sbjct: 133 FEVEYVVIAMQCPDCAK-SYTVNTWKAAVQIRQKVSHKRTFLYLEQLILRHSAHVDTISI 191
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DFF+ RSHA+K ++F+G VAP++S+ ++LVS D + +YK+TFSVEI P
Sbjct: 192 QESRDGLDFFYSQRSHALKMIDFLGSVAPIKSKKSEELVSQDIHAGTSSYKFTFSVEIVP 251
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
ICR+DL+ LP K+A SLG+L LV+C KV+N++ LD TL+ L Y++ F SL
Sbjct: 252 ICRDDLVVLPKKLAQSLGSLSQLVLCSKVSNTLQFLDVNTLKTGDLSPQVYYKKPFMSLS 311
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
+ QLVE+IVLDVE V KYVLAD AR +D G ND + +R+HLG LL+PG
Sbjct: 312 DASQLVEFIVLDVE----PTGVTKGKYVLADVTCARAADLGSNDKEYYVRSHLGALLHPG 367
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME-- 428
D +GY ++N N D LP+ IL+KK Y+ RK K R+WKLK + E
Sbjct: 368 DSVMGYYTVNSNYNHDLWDSLDRDNLPDVILVKKHYQ----RKTRKNRNWKLKRMAREHQ 423
Query: 429 -----VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDY---QPSEMAS--- 477
D R + E+ K+YE FL++LEE+ E+R I+LY++ + Q E A
Sbjct: 424 DIVANEDSRAARQEMERAEKDYEVFLQELEEDQEMRQAINLYKDTNLTERQQQEAAGDEM 483
Query: 478 -VTDGEDVPSVPLDELLADLD 497
+ ED P V +DELL +LD
Sbjct: 484 DEDEDEDAPGVDIDELLDELD 504
>gi|395528258|ref|XP_003766247.1| PREDICTED: 60S ribosomal export protein NMD3 [Sarcophilus harrisii]
Length = 526
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 233/527 (44%), Positives = 330/527 (62%), Gaps = 46/527 (8%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G VLCC+CG+P+ PN ANMCVACLR++VDI+EG+ K V I+ C +C+ YLQPP TWI+
Sbjct: 13 GCVLCCECGVPIPPNPANMCVACLRTQVDISEGIPKQVSINFCKQCERYLQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELLT C+K++K +L++VRL+ A F+WTEPHSKR+KVKL +QKEVLNGAIL+Q +VV
Sbjct: 73 LESRELLTLCLKKIKASLSKVRLIEAGFVWTEPHSKRLKVKLTIQKEVLNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
EYV Q MCD+C RV+A D W A VQ+RQ H++TF+YLEQLILKH A +RI ++
Sbjct: 133 EYVVQPQMCDACHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKHRAHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVR------------------------SRHDKQLV 229
G+DF++ + HA K V+F+ P R S + LV
Sbjct: 192 HDGLDFYYAQKQHAQKMVDFLQCTVPCRAYKQETETLQVVVGPSPTGHRDAPSCPEAALV 251
Query: 230 SHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPF 289
H P + SV +S ++++CL PK+A SLGN+ + +C++VT++I L+DP
Sbjct: 252 VHRPGCGAHGARGK-SVPVSSRLPDNVVCLSPKLAQSLGNMSQICVCIRVTSAIHLIDPN 310
Query: 290 TLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQV 344
TL+ +D + YWR F SL +QL E+IV++ +V ++ V G+ K++LA+ V
Sbjct: 311 TLQIAEIDGNTYWRYPFSSLCHPKQLEEFIVMECSLVHNQKAVAGAGMRSNKHMLAEVWV 370
Query: 345 ARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKK 404
+ S+ ++ F RTHLGHLLNPGD LG+DL + N ND +K +P+ +LIKK
Sbjct: 371 QKTSEMNTDNQYFC-RTHLGHLLNPGDLVLGFDLANCNLNDEYANKMSTHRVPDVVLIKK 429
Query: 405 SYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISL 464
SY+ KR + R+WKLK LD D TD E ++Y++FL DLEE+ +R N+++
Sbjct: 430 SYDRV---KRQRRRNWKLKELDR--DKETMDTDDE---RQYQDFLEDLEEDETIRKNVNI 481
Query: 465 YRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSD--DGEGDDSM 509
Y+ + + S TD E P + L E+L DL + D GEG M
Sbjct: 482 YKAST---APVESDTDDEGAPQISLAEMLEDLHISEDATGGEGASMM 525
>gi|296423194|ref|XP_002841140.1| 60S ribosomal export protein NMD3 [Tuber melanosporum Mel28]
gi|295637374|emb|CAZ85331.1| unnamed protein product [Tuber melanosporum]
Length = 530
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/480 (44%), Positives = 312/480 (65%), Gaps = 14/480 (2%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
+ +VLC CG P+ MC C++ VDI++G+Q+ I C CD +LQPP W+
Sbjct: 17 IATVLCATCGAPIDGSTGVAMCYDCIKLNVDISDGIQREATIHFCRGCDRWLQPPTQWVS 76
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A LES+ELL C+++L+ L +VR+++A FIWTEPHSKRI+VK+ VQ+E IL+QS+
Sbjct: 77 AALESRELLALCLRKLRGLAKVRIIDASFIWTEPHSKRIRVKITVQQEAFQSTILQQSFE 136
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV H C C++ + W A VQ+RQ V H+RTF YLEQLILKH+A I I +
Sbjct: 137 VEYVVAYHQCPDCAK-SFTANTWRACVQVRQKVPHKRTFLYLEQLILKHNAHKDTINIRE 195
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
+ G+DF++ R+HA K V+F+G V P+ S+ +L+S D ++ +YK+T+SVE+ PIC
Sbjct: 196 VKDGLDFYYSQRNHATKMVDFLGAVVPITSKKSSELISTDIHTSTKSYKFTYSVELVPIC 255
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
++DL+C+P K+A SLGN+ PL++C ++ NSI L+DP TL+ + YWR+ F SL
Sbjct: 256 KDDLVCIPIKMARSLGNISPLLLCTRIGNSIHLMDPGTLQVADVQTSVYWRAPFSSLADV 315
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
++LVE+IVLD+E ++VLADAQVAR SD N + +RTHLG +L+PGD
Sbjct: 316 QELVEFIVLDIEPSGP----THGRFVLADAQVARASDMVSNTQSYLVRTHLGGILHPGDS 371
Query: 373 ALGYDLYSANNNDMELDKYKGLV---LPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
LGY L N N+ + + + V +PE +L+KKSY K K++K R+W+LK + E
Sbjct: 372 VLGYHLSGTNFNNPQYEDLERTVPGQIPEVVLVKKSYPRK---KKNKNRNWRLKRMAREE 428
Query: 430 DDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D R DQE+ ++YE FLRD+EE+ ELR +++LY+N P + + +G ++ SVP
Sbjct: 429 SDMLPRKQDQERAERDYEMFLRDVEEDTELRASLALYKNTRKNPPKTQRM-EGVEMESVP 487
>gi|119175083|ref|XP_001239829.1| 60S ribosomal export protein NMD3 [Coccidioides immitis RS]
gi|392870023|gb|EAS28571.2| nonsense-mediated mRNA decay protein 3 [Coccidioides immitis RS]
Length = 526
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/520 (41%), Positives = 327/520 (62%), Gaps = 32/520 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ A +C C++ +DI+EG+Q+ + C +C+ +LQ
Sbjct: 16 FQPQQQAATILCCNCGAPIDGTTAAGALCEDCIKLTIDISEGIQREATLHMCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A LES+ELL C+++L+ L++VR+++A F+WTEPHSKRIKVK+ +Q+EV G
Sbjct: 76 PPSQWISAALESRELLALCLRKLRGLSKVRIIDASFLWTEPHSKRIKVKITIQQEVFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q++ VEYV C C++ + W A+VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 136 ILQQTFEVEYVVASQQCPECAK-SYTANTWRASVQVRQKVPHKRTFLHLEQLILKHGAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I ++ G+DFFF R+HA + V+F+ VAPVR + +QL+S D ++ +YK +FS
Sbjct: 195 DTINIKEVKDGLDFFFSQRNHAERLVDFLSSVAPVRVKKSQQLISMDVHTSTKSYKISFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
VE+ PIC++DL+ LP K+A SLGN+ PL +C +V S+ LLDP TL+ + + YWRS
Sbjct: 255 VELIPICKDDLVALPIKLARSLGNISPLTLCYRVGTSVNLLDPNTLQIADIPSPIYWRSP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
FK+L ++LVE+IV+D+E + ++ LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FKNLADVQELVEFIVMDIEPIGH----SSGRFYLAEATVARASDLGVNDTTYFTRTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+PGD +GY L N ND +E +P+ +L+KK Y K K+ K R+W
Sbjct: 371 VLHPGDSVMGYHLTGTNFNDENFEALEQSGTYSSTIPDVVLVKKYYARK---KKHKSRNW 427
Query: 421 KLKSLDMEVDD----SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
+LK LD E +D S + ++++ +++E FLRD+EE+ ELR ++LY+ + +P A
Sbjct: 428 RLKRLDREEEDHPSASSRQQGKDRLEEDFEMFLRDIEEDTELRSTLALYKAQQ-KPRAHA 486
Query: 477 SVTDGED-----------VPSVPLDELLADL-DLKSDDGE 504
DG + VP + +DELL + +L +DG+
Sbjct: 487 DQMDGVEMNVDDDSDDDDVPKINMDELLDEFEELNMEDGQ 526
>gi|254568344|ref|XP_002491282.1| 60S ribosomal export protein NMD3 [Komagataella pastoris GS115]
gi|238031079|emb|CAY69002.1| Protein involved in nuclear export of the large ribosomal subunit
[Komagataella pastoris GS115]
gi|328352200|emb|CCA38599.1| 60S ribosomal export protein NMD3 [Komagataella pastoris CBS 7435]
Length = 506
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/498 (44%), Positives = 319/498 (64%), Gaps = 16/498 (3%)
Query: 9 TVPQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
T Q V +VLCC CG+PM MC C++ VDITEG+ + +S C C+ +LQPP
Sbjct: 10 TEQQGVATVLCCNCGVPMDGTTGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPP 69
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
WI+A+LES+ELL C++RLK LN+VRL++A FIWTEPHS+RIKVKL VQ E + I+
Sbjct: 70 GQWIRAELESRELLALCLRRLKGLNKVRLIDASFIWTEPHSRRIKVKLTVQGEAMTNTII 129
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+QS+ VEYV C C++ + W AAVQ+RQ V H+RTF +LEQLILKH+A
Sbjct: 130 QQSFEVEYVVMAMQCPDCAK-SFTANTWRAAVQVRQKVPHKRTFLHLEQLILKHNAHVDT 188
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
I I + G+DF++ ++HA K ++F+ VAPV+S+ ++LVS D S YK+TFSVE
Sbjct: 189 ISIKEAKDGLDFYYAQKNHAAKMIDFISSVAPVKSKKSEELVSADIHSGTSTYKFTFSVE 248
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PICR+DLI LP K+A SLG + LV+C KV+N++ +DP TL+ ++++ Y+R F
Sbjct: 249 IVPICRDDLIVLPKKLAHSLGTISRLVVCSKVSNTVQFIDPNTLQIADINSNVYFRDPFP 308
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
L +L+E+IVLDVE Y+LAD VAR +D G ND + +R+HLG LL
Sbjct: 309 VLCNRTELIEFIVLDVEPTGE----TRGNYILADITVARAADMGNNDQEYYVRSHLGGLL 364
Query: 368 NPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
NPGD A GY L ++N N D+ + + +LIKK + R +R+K R+W+L+ +
Sbjct: 365 NPGDSADGYFLANSNFNSDLFDELDSKNVLDVVLIKKHF--SRSARRAKKRAWRLRRMAK 422
Query: 428 EVDD-------SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYR-NKDYQPSEMASVT 479
E D + + +QEK ++YE FL++LEE+PELR ++LY+ ++ P A +
Sbjct: 423 EHQDIVANDESRQAKQEQEKAERDYEIFLQELEEDPELRQTVNLYKADEPPAPENEADMD 482
Query: 480 DGEDVPSVPLDELLADLD 497
+ +D P + +DELL +LD
Sbjct: 483 EDDDAPEIGVDELLDELD 500
>gi|258566858|ref|XP_002584173.1| nonsense-mediated mRNA decay protein 3 [Uncinocarpus reesii 1704]
gi|237905619|gb|EEP80020.1| nonsense-mediated mRNA decay protein 3 [Uncinocarpus reesii 1704]
Length = 533
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/517 (41%), Positives = 326/517 (63%), Gaps = 35/517 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ A +C C++ +DI+EG+Q+ + C +C+ +LQ
Sbjct: 16 FQPQQQTATILCCNCGAPIDGTTAAGALCEDCIKLTIDISEGIQREATLHMCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A LES+ELL C+++L+ L++VR+++A F+WTEPHSKRIKVK+ +Q+E L G
Sbjct: 76 PPSQWISASLESRELLALCLRKLRGLSKVRIIDASFLWTEPHSKRIKVKITIQQEALQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q++ VEYV C C++ + W A+VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 136 ILQQTFEVEYVVASQQCPECAK-SYTANTWRASVQVRQKVPHKRTFLHLEQLILKHGAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I ++ G+DFFF R+HA K V+F+ VAPVR + +QL+S D ++ +YK +FS
Sbjct: 195 DTINIKEVKDGLDFFFSQRNHAEKLVDFLSSVAPVRVKKSQQLISMDIHTSTKSYKISFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
VE+ PIC++DL+ LP K+A SLGN+ PL +C +V S+ LLDP TL+ + A YWRS
Sbjct: 255 VELIPICKDDLVALPIKLARSLGNISPLTLCYRVGTSVNLLDPNTLQTADVPAPIYWRSP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
FK++ ++LVE+IV+D+E + ++ LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FKNIADVQELVEFIVMDIEPIGQ----SSGRFYLAEATVARASDLGSNDTTYFTRTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+PGD +GY + N ND +E + ++P+ +L+KK Y K K++K R+W
Sbjct: 371 VLHPGDSVMGYHITGTNFNDENYEALEQNSTYSSMIPDVVLVKKHYPRK---KKNKARNW 427
Query: 421 KLKSLDMEVDD----SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLY-----RNKDYQ 471
+LK LD + ++ S + +Q ++ +++E FLRD+EE+ ELR ++LY R ++
Sbjct: 428 RLKRLDRDEEEPSSSSNRQQNQNRLEEDFELFLRDIEEDTELRSTLALYKAKQTRKQNTH 487
Query: 472 PSEMASV-----------TDGEDVPSVPLDELLADLD 497
P +M V D + VP + +DELL + +
Sbjct: 488 PDQMGDVEMNVDDEDNEDDDDDGVPKINMDELLDEFE 524
>gi|154317304|ref|XP_001557972.1| 60S ribosomal export protein NMD3 [Botryotinia fuckeliana B05.10]
gi|347829645|emb|CCD45342.1| similar to nonsense-mediated mRNA decay protein 3 [Botryotinia
fuckeliana]
Length = 521
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/500 (42%), Positives = 325/500 (65%), Gaps = 21/500 (4%)
Query: 11 PQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
P+T ++LCC CG P+ +A +C C++ VD+++G+Q+ + C +C+ +L PP+
Sbjct: 22 PKTGATILCCNCGAPIDGTTSAGALCYDCVKLTVDVSQGIQREATVHFCRDCERWLLPPQ 81
Query: 69 TWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
TWI+A LES+ELL C+K+L+ L++VR+++A FIWTEPHS+RIKVKL +Q V G +L+
Sbjct: 82 TWIQASLESRELLALCLKKLRGLHKVRIIDASFIWTEPHSRRIKVKLTIQDSVSEGVVLQ 141
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
QS+ VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH A I
Sbjct: 142 QSFEVEYVVAYQQCPDCAK-SYTANTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDTI 200
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
I ++ G+DFFF R+ A KFV+F+ VAP+ ++ ++L+S D ++ +YK++FSVE+
Sbjct: 201 NIKEVKDGLDFFFAARNSAEKFVDFLNSVAPITAKKSQELISMDIHTSTKSYKFSFSVEL 260
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PIC++DL+ LP K+A + GN+ PL +C ++ NSI +LDP +L+ + YWR+ FK
Sbjct: 261 VPICKDDLVALPIKLAKAAGNISPLGLCYRIGNSINILDPQSLQTAEISCPIYWRAPFKP 320
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
L ++LVE+I++D+E + ++ LA+A VAR SD G ND F RTHLG++++
Sbjct: 321 LADVQELVEFIIMDIEPLGPT----KGRWALAEATVARASDLGSNDKTFYTRTHLGNVVH 376
Query: 369 PGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
PGD +GY + N N+ + D + +P+ +L+KK Y K K+SK R+W+LK
Sbjct: 377 PGDSVMGYMMTGTNFNNPQYDALEESNNYASKIPDVMLVKKLYARK---KKSKNRNWRLK 433
Query: 424 SLDMEVDDSKGRT-DQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS----EMASV 478
+ E + R DQEKM+++YE FL+D+EE+PELR ++LY+ + Q +A
Sbjct: 434 RMGKEEGEVLPRKQDQEKMDRDYEMFLQDVEEDPELRQTLALYKAQQAQKEADAMSVAET 493
Query: 479 TDGED-VPSVPLDELLADLD 497
+DGED P + ++ELL + D
Sbjct: 494 SDGEDETPKIDMNELLDEFD 513
>gi|290991606|ref|XP_002678426.1| predicted protein [Naegleria gruberi]
gi|284092038|gb|EFC45682.1| predicted protein [Naegleria gruberi]
Length = 623
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/465 (46%), Positives = 310/465 (66%), Gaps = 24/465 (5%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
+VLCC CG+ N ANMC+ C++S+VDIT+G+ K I C EC+ YLQPP+ WIK +
Sbjct: 87 NVLCCLCGVVTPANPANMCLNCIKSQVDITDGITKSETIFFCRECERYLQPPKYWIKCDM 146
Query: 76 ESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVL-NGAILEQSYVVE 134
ESKELLT C+KR+ LNRV+L++A+F+WTEPHS+R+KVK+ +QKEVL NG IL+QS+VVE
Sbjct: 147 ESKELLTLCLKRIHGLNRVKLIDAKFLWTEPHSRRLKVKITIQKEVLGNGTILQQSFVVE 206
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
++ ++ C+ C + W A VQ+RQ + H+RTF +LEQLILKH+ +AI I +
Sbjct: 207 FIVRNQQCEVCQKSHT-LYTWNAVVQVRQKLDHKRTFLFLEQLILKHNVHEKAINIKEEA 265
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DFFF RSHA K V+F+ VA ++S+ ++LV+HD KSN FN+KY+FS+EI+PICRE
Sbjct: 266 DGLDFFFSERSHAKKLVDFLQSVASIKSKTGERLVTHDAKSNIFNFKYSFSLEIAPICRE 325
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
DLICLP +++ S+G +GPLV+C KV +I +DP TL+ LD YWR F S LTSRQ
Sbjct: 326 DLICLPKRLSTSMGGIGPLVLCTKVNKNIFFVDPTTLQTNELDGALYWRQPFFSALTSRQ 385
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYAL 374
L E+ V+D + + KY+L + Q+ R + G +D IF +++HLG LL+PGD +
Sbjct: 386 LSEFTVVD---NPNNLPAANGKYILCEVQIVRSDELG-SDPIF-VKSHLGALLHPGDTIM 440
Query: 375 GYDLYSANNNDMELDKYKGL---VLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME--- 428
YDL A ++ L YK LPE I++KK Y K+ K R+W+LKS E
Sbjct: 441 CYDLRKAQYDEGLLADYKNSQTEKLPEVIIVKKIY------KKRKERNWELKSFTGEKNF 494
Query: 429 -----VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK 468
++ + D ++ K+ E+F R+LEE+ E+R + L++ K
Sbjct: 495 NNPLATEEGNVKQDSKRKEKDLEDFKRELEEDDEMRSKVLLFKAK 539
>gi|301121887|ref|XP_002908670.1| 60S ribosomal export protein NMD3, putative [Phytophthora infestans
T30-4]
gi|262099432|gb|EEY57484.1| 60S ribosomal export protein NMD3, putative [Phytophthora infestans
T30-4]
Length = 524
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/510 (44%), Positives = 339/510 (66%), Gaps = 22/510 (4%)
Query: 7 MFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66
M T+ + ++LCC C P+ NAAN CV+CL+S+VD+TEG+ K VII C C + +P
Sbjct: 1 MSTMTSQMPTILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRP 60
Query: 67 PRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAI 126
P W+ A+LES+ELL C+K++ NLNRV+L++A +IWTEPHS+R+K+KL VQKEVL+ I
Sbjct: 61 P--WVAAELESRELLAMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKLTVQKEVLSKMI 118
Query: 127 LEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAAR 186
++QS+VV +V ++ CD+C AN W A VQ+RQ V H+RTFF+LEQLILKH A +
Sbjct: 119 MQQSFVVTFVVRNQQCDACQASFAN-QSWRAVVQVRQRVDHKRTFFFLEQLILKHRAHEK 177
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
I G+DFFF R+HA++FV+F+ + P++ + K+L+S D SN NYK+T++V
Sbjct: 178 TTNIESHPDGVDFFFSERNHALRFVDFLQESVPMKVKTAKKLISADNHSNTHNYKFTYAV 237
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
EI+P+C++DL+ LP K+A LGN+ L + VT+SI ++DPFT + +D+++YWR F
Sbjct: 238 EIAPVCKDDLVLLPVKLARMLGNMSCLCLVQSVTSSIHVVDPFTTQVAEVDSEKYWRYPF 297
Query: 307 KSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYV-------LADAQVARVSDFGKNDTIFSI 359
++L + + + + VLD ++ + GG + + LAD +V R +DFG NDT F
Sbjct: 298 RALRSIKAMTDLTVLDSNPMA--IPSGGGRAIRVTRKTRLADMEVVRDADFGVNDTRFRT 355
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKY--KGLVLPETILIKKSYEEKRLRKRSKP 417
+HLG LL+ GD A GYDL SA ND +L GL LP+ +L+KK + +R++KR+
Sbjct: 356 VSHLGMLLHVGDSARGYDLTSAVFNDADLVPLVQSGLTLPDVVLVKKMF-PRRIQKRA-- 412
Query: 418 RSWKLKSLD-MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN--KDYQPSE 474
R+WKLK ++ +E + D K ++YE+F+ +LEE+ E+R I+LY++ K QP+E
Sbjct: 413 RNWKLKKMEGVEQAGPVRKADLSKEEQDYEQFMDELEEDKEMRSQINLYKDETKPAQPAE 472
Query: 475 MASVTDGEDV--PSVPLDELLADLDLKSDD 502
D +DV P+V L ELL DL +K DD
Sbjct: 473 DDDAMDEDDVGAPAVELHELLDDLAMKDDD 502
>gi|190347658|gb|EDK39975.2| histone acetyltransferase GCN5 [Meyerozyma guilliermondii ATCC
6260]
Length = 658
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/503 (45%), Positives = 327/503 (65%), Gaps = 14/503 (2%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPE 59
M+ + P V +VLCC CG+PM + MC C++ VDITEG+ + +S C
Sbjct: 159 MSNYTHLQNTPAQVATVLCCNCGVPMDGSSGLVMCHDCIKLTVDITEGIPREANLSFCRN 218
Query: 60 CDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQK 119
C+ +LQPP WI+ LES+ELL C+++LK LN+VRLV+A FIWTEPHS+RI+VKL VQ
Sbjct: 219 CERFLQPPTQWIRCALESRELLALCLRKLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQG 278
Query: 120 EVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLIL 179
E + I++Q++ VEYV C C++ + W A VQ+RQ V H+RTF YLEQLIL
Sbjct: 279 EAMANTIIQQTFEVEYVVVAMQCADCAK-SYTTNTWRATVQIRQKVAHKRTFLYLEQLIL 337
Query: 180 KHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFN 239
KH+A + I + G+DFF+ +SHA K VEF+ VAPV+++ ++LVS D S +
Sbjct: 338 KHNAHVDTVNIQETKDGLDFFYAQKSHAAKMVEFLTAVAPVKNKRSEELVSQDIHSGSSQ 397
Query: 240 YKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
YK+TFS+E++PICR+DL+ LP K+A SLGN+ LV+C KV++ + +DP TL+ L+A
Sbjct: 398 YKFTFSIELAPICRDDLVVLPKKLAHSLGNITRLVLCSKVSSMLHFIDPSTLQTADLNAP 457
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
QYWRS F +LL + Q+VE+IVLDVE ++ G K VLAD V+R SD G ND + I
Sbjct: 458 QYWRSPFPTLLDATQMVEFIVLDVEPTG---DIRG-KNVLADVTVSRASDLGTNDQTYYI 513
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
R+HLG +L+PGD +GY L + N N D PE +L+KK YE K K+SK R+
Sbjct: 514 RSHLGAILHPGDSCMGYFLTNTNLNSDLWDTLDTDNTPEVVLVKKHYERK--SKKSKYRN 571
Query: 420 WKLKSLDM---EVDDS--KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE 474
WKLK + E+DD+ + R +QEK ++YE FL++LEE+ ELR +++Y+ E
Sbjct: 572 WKLKRMAKEYNEMDDATRQARQEQEKAERDYELFLQELEEDEELRQTVNMYKAPTQAQFE 631
Query: 475 MASVTDGEDVPSVPLDELLADLD 497
+ + D ++ P V LDELL ++D
Sbjct: 632 -SDMDDDDEAPEVGLDELLDEMD 653
>gi|156059292|ref|XP_001595569.1| 60S ribosomal export protein NMD3 [Sclerotinia sclerotiorum 1980
UF-70]
gi|154701445|gb|EDO01184.1| hypothetical protein SS1G_03658 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 521
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/499 (42%), Positives = 324/499 (64%), Gaps = 21/499 (4%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
QT ++LCC CG P+ +A +C C++ VD+++G+Q+ + C +C+ +L PP+T
Sbjct: 23 QTGATILCCNCGAPIDGTTSAGALCYDCVKLTVDVSQGIQREATVHFCRDCERWLLPPQT 82
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI+A LES+ELL C+K+L+ L++VR+++A FIWTEPHS+RIKVKL +Q V G +L+Q
Sbjct: 83 WIQASLESRELLALCLKKLRGLHKVRIIDASFIWTEPHSRRIKVKLTIQDSVSEGVVLQQ 142
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH A I
Sbjct: 143 SFEVEYVVAYQQCPDCAK-SYTANTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDTIN 201
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I ++ G+DFFF R+ A KFV+F+ VAPV ++ ++L+S D ++ +YK++FSVE+
Sbjct: 202 IKEVKDGLDFFFAARNSAEKFVDFLHSVAPVTAKKSQELISMDIHTSTKSYKFSFSVELV 261
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP K+A S GN+ PL +C ++ NSI +LDP +L+ + YWR+ FK L
Sbjct: 262 PICKDDLVALPIKLAKSAGNISPLGLCYRIGNSINILDPQSLQTAEISCPIYWRAPFKPL 321
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++LVE+I++D+E + ++ LA+A VAR SD G ND F RTHLG++++P
Sbjct: 322 ADVQELVEFIIMDIEPLGPT----KGRWALAEATVARASDLGSNDKTFYTRTHLGNVVHP 377
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD +GY + N N+ + D + +P+ +L+KK Y K K+SK R+W+LK
Sbjct: 378 GDSVMGYMMTGTNFNNPQYDALEESNNYASKIPDVMLVKKLYARK---KKSKNRNWRLKR 434
Query: 425 LDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS----EMASVT 479
+ E + R DQEKM+++YE FL+D+EE+PELR ++LY+ + Q +A +
Sbjct: 435 MGKEEGEVLPRKQDQEKMDRDYEMFLQDVEEDPELRQTLALYKAQQAQKEADAMSVAETS 494
Query: 480 DGED-VPSVPLDELLADLD 497
DGED P + ++ELL + D
Sbjct: 495 DGEDETPKIDMNELLDEFD 513
>gi|315042299|ref|XP_003170526.1| 60S ribosomal export protein NMD3 [Arthroderma gypseum CBS 118893]
gi|311345560|gb|EFR04763.1| nonsense-mediated mRNA decay protein 3 [Arthroderma gypseum CBS
118893]
Length = 524
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/474 (44%), Positives = 308/474 (64%), Gaps = 18/474 (3%)
Query: 8 FTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ A +C C++ VDI+EG+Q+ + C +C+ +LQ
Sbjct: 16 FHPQQQAATILCCNCGAPIDGTTAAGALCEDCIKLTVDISEGVQREATLHCCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A LES+ELL C+++L+ L++VR+++A FIWTEPHSKR+KVK+ +Q+E G
Sbjct: 76 PPTQWISAALESRELLALCLRKLRGLSKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q++ VEYV C C++ + W A+VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 136 ILQQAFEVEYVVASQQCAECAK-SYTVNTWRASVQVRQKVPHKRTFLYLEQLILKHGAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I ++ G+DF+F R+HA K V+F+ VAP+R + +QL+S D +++ +YK TFS
Sbjct: 195 DTINIKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
E+ PIC++DL+ LP K+A SLGN+ PL +C +V SI +LDP TL+ + A YWRS
Sbjct: 255 AELIPICKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPAPIYWRSP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
F +L ++LVEY+V+D+E + +Y LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FANLADVQELVEYVVMDIEAIGQ----SSGRYHLAEATVARSSDLGVNDTTYFARTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+PGD +GY L N N+ ++ + G +P+ IL+KK Y KR ++K R+W
Sbjct: 371 ILHPGDTVMGYHLTGTNFNNTNFEEIEASHTYGSTIPDVILVKKHYPRKR---KNKKRNW 427
Query: 421 KLKSLDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ 471
+LK LD E +D SK +++ ++ ++E FLRD+EE+ ELR ++LY+ K Q
Sbjct: 428 RLKRLDREEEDERPSKKQSNNNRLEDDFEMFLRDVEEDAELRSTLALYKAKHSQ 481
>gi|255719250|ref|XP_002555905.1| 60S ribosomal export protein NMD3 [Lachancea thermotolerans CBS
6340]
gi|238941871|emb|CAR30043.1| KLTH0H00594p [Lachancea thermotolerans CBS 6340]
Length = 512
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/502 (43%), Positives = 313/502 (62%), Gaps = 21/502 (4%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
+VLCC CG PM + MC C++ VDITEG+ + +S C C+ +LQPP W++
Sbjct: 16 AATVLCCNCGTPMDGSSGLVMCYDCIKLTVDITEGIPRESNVSFCRNCERFLQPPGQWVR 75
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI+VKL VQ E + I++Q++
Sbjct: 76 AELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIIQQTFE 135
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C+R + W A VQ+RQ V+H+RTF YLEQLILKH+A I I +
Sbjct: 136 VEYVVVAMQCADCAR-SYTTNTWRATVQIRQKVSHKRTFLYLEQLILKHNAHVDTINIQE 194
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HAVK ++F+ V P++S+ ++LVS D + YK+++SVEI P+C
Sbjct: 195 AKDGLDFFYAQKNHAVKMLDFLNAVVPIKSKKSEELVSQDTHTGASTYKFSYSVEIVPLC 254
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A SLGN+ V+C K++N+I LDP TL+ L YWRS F SL
Sbjct: 255 RDDLVVLPKKLAKSLGNISQFVLCSKISNTIQFLDPMTLQTSDLSPSVYWRSPFDSLADV 314
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QLVE+IVLDV+ K+VLAD VAR SD G ND ++ +R+HLG + +PGD
Sbjct: 315 SQLVEFIVLDVDPTGQ----TKGKWVLADITVARASDLGSNDQVYYVRSHLGAICHPGDS 370
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDS 432
+GY + ++N N D +P+ +L+KK Y +RK K RSWKLK + E D
Sbjct: 371 VMGYFIANSNYNSDLFDALNMEHVPDVVLVKKQY----IRKTRKNRSWKLKRMAREHKDI 426
Query: 433 KGRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS-EMASVTDGE 482
+ D E+ K+YE FL++LEE+ E+R ++LY++ P + E
Sbjct: 427 EASQDYSSRQQKQEMERAEKDYELFLQELEEDAEMRQAVNLYKSAQQAPQDGEMDEDEEE 486
Query: 483 DVPSVPLDELLADLD-LKSDDG 503
D P + +DELL +LD + D+G
Sbjct: 487 DAPQIDIDELLDELDEMTLDEG 508
>gi|343425103|emb|CBQ68640.1| probable NMD3-nonsense-mediated mRNA decay protein [Sporisorium
reilianum SRZ2]
Length = 550
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/542 (42%), Positives = 333/542 (61%), Gaps = 58/542 (10%)
Query: 11 PQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
P VLC CG P+ PN AN+C++CLR+ VDITE + K ++ C C+ YL PP +W
Sbjct: 6 PAAQHMVLCADCGTPITPNNANLCLSCLRNSVDITESVPKQATVNFCRNCERYLNPPNSW 65
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ A+LES+ELL C+K+LK LN+VRL++A FIWTEPHSKR++VKL VQKEV IL+Q
Sbjct: 66 VPARLESRELLAICLKKLKGLNKVRLIDAGFIWTEPHSKRLRVKLTVQKEVFTSTILQQI 125
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VE+V Q C C+R+ A + W A VQ+RQ V H+RTF YLEQLILKH+A + I
Sbjct: 126 FEVEFVVQYGQCPDCTRLAAK-NTWRAMVQVRQKVQHKRTFLYLEQLILKHNAHQNTVSI 184
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DFF+ RSHA+K VEF+ V P+++ +Q++S D ++ NYK+T+SVEI+P
Sbjct: 185 NEKKDGLDFFYTQRSHAIKMVEFLNSVVPIKTTKSEQVISMDVHTSTTNYKFTYSVEIAP 244
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC+ DL+CLPPK+A LGN+G LV+C KVTNS+ +DP +L+ + A++YWR + +L
Sbjct: 245 ICKGDLVCLPPKMAKQLGNIGQLVLCHKVTNSLRFIDPISLQIAEVPAEKYWRDAQPALA 304
Query: 311 TSRQLVEYIVLDVE----VVSSEVNVGGSKYVLADAQVA--RVSDFGKNDTIFSIRTHLG 364
T +++E++VLD+E ++ V + ADAQV+ + FG+ D ++ RTHLG
Sbjct: 305 TIPEMIEFLVLDIEPTGRYATNSHGVENRRLEEADAQVSPLNATSFGEADAVYHTRTHLG 364
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
+L PGD +GY L AN N D +P+ +L+KKSY E+ +KRSK R WKLKS
Sbjct: 365 AILQPGDTVMGYHLRVANFNSATWDTIPADRMPDVVLVKKSYPER--KKRSKNRMWKLKS 422
Query: 425 LDMEVDDSKGRT-------------DQEKMNKEYEEFLRDLEENPELRFNISLYRN---- 467
+ EV+D D +++ ++YE FLR+LEE+ ELR ++LYR+
Sbjct: 423 MAKEVEDPAAEGAVGRGAVGRRGGLDSQRVERDYELFLRELEEDEELRGTVNLYRDPKKE 482
Query: 468 -------------KDYQPSEMAS-------------VTDGE------DVPSVPLDELLAD 495
K + + +A+ TDGE D P V +DELL D
Sbjct: 483 EERRLRKERAAQLKAEREAALANGGMEEDADVDDGMTTDGESEWGDDDAPRVGMDELLDD 542
Query: 496 LD 497
L+
Sbjct: 543 LE 544
>gi|119482227|ref|XP_001261142.1| 60S ribosomal export protein NMD3 [Neosartorya fischeri NRRL 181]
gi|119409296|gb|EAW19245.1| nonsense-mediated mRNA decay protein 3 [Neosartorya fischeri NRRL
181]
Length = 532
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/530 (40%), Positives = 324/530 (61%), Gaps = 41/530 (7%)
Query: 8 FTVPQTV--GSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
F PQ ++LCC CG P+ +A +C C+R VDI++G+ + ++ C +C+ +
Sbjct: 11 FAAPQEAISATILCCNCGAPIDGTTSAGALCQDCVRLTVDISQGIPREGVLHFCRDCERW 70
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
LQPP W+ A LESKELL C+++L+ LN+VR+++A FIWTEPHS+RIKVK+ +Q+E
Sbjct: 71 LQPPSAWVSAALESKELLALCLRKLRGLNKVRIIDASFIWTEPHSRRIKVKITIQQEAFQ 130
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
G I++Q++ VEYV C C++ + + W A+VQ+RQ V H+RTF YLEQLILKH+A
Sbjct: 131 GTIVQQAFEVEYVVHAQQCPDCAKSYTH-NTWRASVQVRQKVPHKRTFLYLEQLILKHNA 189
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
+ I + G+DFFF R+HA K V+F+ V P++ + ++L+S D ++ +YK+T
Sbjct: 190 HQDTVNIKEAKDGLDFFFAQRNHAEKMVDFLSSVTPIKVKKSQELISMDIHTSTKSYKFT 249
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
FSVE+ PIC++DL+ LP K+A SLGN+ PL +C +V+ S+ L+DP TL+ + YWR
Sbjct: 250 FSVELVPICKDDLVALPIKLARSLGNISPLALCHRVSTSVNLIDPNTLQTAEVPTAVYWR 309
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
+ FK+L +LVE+I++D+E V ++ LA+A VAR SD G N+ + RTHL
Sbjct: 310 APFKNLADVNELVEFIIMDIEPVGR----SNGRFHLAEATVARASDLGSNNQTYFTRTHL 365
Query: 364 GHLLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPR 418
G +L+ GD LGY L AN ND +E G +P+ +L+KK Y K K K R
Sbjct: 366 GGILHVGDSVLGYHLTGANFNDPNFEAIEASSQYGSTIPDVVLVKKHYARK---KNKKTR 422
Query: 419 SWKLKSLDMEVDDS-----------KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
+W+LK + E ++ K ++E+M ++E FLRD+EE+ ELR + LY+N
Sbjct: 423 NWRLKRMAREYEEEALQQQGASISRKQEQERERMEADFEMFLRDVEEDQELRSTLQLYKN 482
Query: 468 KDYQPSEMASVTDGED------------VPSVPLDELLADLD-LKSDDGE 504
K+ +P++ V G P + ++ELL D D L DD E
Sbjct: 483 KNARPNDRMQVEGGAGGMDMDEDESDDEAPKISMEELLDDFDELNVDDEE 532
>gi|146414748|ref|XP_001483344.1| histone acetyltransferase GCN5 [Meyerozyma guilliermondii ATCC
6260]
Length = 658
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/503 (45%), Positives = 327/503 (65%), Gaps = 14/503 (2%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPE 59
M+ + P V +VLCC CG+PM + MC C++ VDITEG+ + +S C
Sbjct: 159 MSNYTHLQNTPAQVATVLCCNCGVPMDGLSGLVMCHDCIKLTVDITEGIPREANLSFCRN 218
Query: 60 CDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQK 119
C+ +LQPP WI+ LES+ELL C+++LK LN+VRLV+A FIWTEPHS+RI+VKL VQ
Sbjct: 219 CERFLQPPTQWIRCALESRELLALCLRKLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQG 278
Query: 120 EVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLIL 179
E + I++Q++ VEYV C C++ + W A VQ+RQ V H+RTF YLEQLIL
Sbjct: 279 EAMANTIIQQTFEVEYVVVAMQCADCAK-SYTTNTWRATVQIRQKVAHKRTFLYLEQLIL 337
Query: 180 KHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFN 239
KH+A + I + G+DFF+ +SHA K VEF+ VAPV+++ ++LVS D S +
Sbjct: 338 KHNAHVDTVNIQETKDGLDFFYAQKSHAAKMVEFLTAVAPVKNKRSEELVSQDIHSGSSQ 397
Query: 240 YKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
YK+TFS+E++PICR+DL+ LP K+A SLGN+ LV+C KV++ + +DP TL+ L+A
Sbjct: 398 YKFTFSIELAPICRDDLVVLPKKLAHSLGNITRLVLCSKVSSMLHFIDPSTLQTADLNAP 457
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
QYWRS F +LL + Q+VE+IVLDVE ++ G K VLAD V+R SD G ND + I
Sbjct: 458 QYWRSPFPTLLDATQMVEFIVLDVEPTG---DIRG-KNVLADVTVSRASDLGTNDQTYYI 513
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
R+HLG +L+PGD +GY L + N N D PE +L+KK YE K K+SK R+
Sbjct: 514 RSHLGAILHPGDSCMGYFLTNTNLNSDLWDTLDTDNTPEVVLVKKHYERK--SKKSKYRN 571
Query: 420 WKLKSLDM---EVDDS--KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE 474
WKLK + E+DD+ + R +QEK ++YE FL++LEE+ ELR +++Y+ E
Sbjct: 572 WKLKRMAKEYNEMDDATRQARQEQEKAERDYELFLQELEEDEELRQTVNMYKAPTQAQFE 631
Query: 475 MASVTDGEDVPSVPLDELLADLD 497
+ + D ++ P V LDELL ++D
Sbjct: 632 -SDMDDDDEAPEVGLDELLDEMD 653
>gi|378727772|gb|EHY54231.1| nonsense-mediated mRNA decay protein 3 [Exophiala dermatitidis
NIH/UT8656]
Length = 515
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/506 (42%), Positives = 328/506 (64%), Gaps = 23/506 (4%)
Query: 11 PQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
PQ ++LCC CG P+ +A +C C++ +D++EG+Q+ ++ C +C+ +L PP
Sbjct: 17 PQ-AATILCCNCGAPIDGTVSAGALCYDCIKLTIDVSEGIQREGVLHTCRDCERWLSPPS 75
Query: 69 TWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W+ A ES+ELL C+++L+ LN+VR+++A F+WTEPHS+RIKVK+ VQ+E G IL+
Sbjct: 76 QWVTAAPESRELLALCLRKLRGLNKVRIIDASFLWTEPHSRRIKVKITVQQEAYEGTILQ 135
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q++ VEYV + C C++ P+ W A+VQ+RQ V H+RTF YLEQL+LKH A I
Sbjct: 136 QTFEVEYVVANQQCPECAK-SFTPNTWRASVQVRQKVPHKRTFLYLEQLVLKHQAHKDTI 194
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
I ++ G+DF+F R+HA KFV+F+ PVR + ++L+S D ++ +YK+T+S E+
Sbjct: 195 NIKEVKDGLDFYFAQRNHAEKFVDFLTSSTPVRVKKSQELISMDVHTSTKSYKFTYSCEL 254
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PIC++DL+ LP K+A S+GN+ PL +C +V S+ LLDP TL+ L ++ YWR+ FKS
Sbjct: 255 LPICKDDLVALPIKLAKSIGNITPLAVCYRVGTSVNLLDPTTLQTADLSSNIYWRAPFKS 314
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
L ++LVE++VLD+E + ++ ++ A+A VAR SD G ND + +RTHLG +L+
Sbjct: 315 LADVQELVEFVVLDIEPLGTQ----NGRFFGAEATVARASDLGVNDKTYYVRTHLGGILH 370
Query: 369 PGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
GD LGY L N N+ + ++ + +P+ +L+KK Y K K+SK R+W+LK
Sbjct: 371 AGDSVLGYHLDRTNFNNTQFEELEQSSQFSSTIPDVVLVKKFYARK---KKSKNRNWRLK 427
Query: 424 SLDM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYR----NKDYQPSEMASV 478
L+ E + + DQE+M+ +YE FLRD+EE+ ELR ++LY+ KD MA+
Sbjct: 428 RLEKDEGELLPKKQDQERMDADYEMFLRDVEEDEELRQTLALYKAQQQKKDADEMSMATG 487
Query: 479 TDGED-VPSVPLDELLADL-DLKSDD 502
ED VP + +DELL D DL +D
Sbjct: 488 ESSEDEVPQINMDELLDDFEDLNVND 513
>gi|46136489|ref|XP_389936.1| hypothetical protein FG09760.1 [Gibberella zeae PH-1]
Length = 517
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/500 (42%), Positives = 322/500 (64%), Gaps = 19/500 (3%)
Query: 9 TVPQT-VGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
T QT ++LCC CG P+ A+ +C C++ VDI++G+Q+ ++ C +CD +L
Sbjct: 15 TTQQTGAATILCCNCGAPIDGTASTGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLM 74
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP +WI A ES+ELL C+K+L+ LN+VR+V+A FIWTEPHS+RI+VK+ +Q EV +G
Sbjct: 75 PPTSWIVASPESRELLALCLKKLRGLNKVRIVDASFIWTEPHSRRIRVKITIQDEVQDGM 134
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
+L+Q++ V YV C C++ + W AAVQ+RQ V H+RTF +LEQLI+KH A
Sbjct: 135 LLQQTFEVIYVVAYQQCPECAK-SYTANVWRAAVQVRQKVLHKRTFLFLEQLIMKHGAHK 193
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
+ I + GIDFFF R+ A KF++F+ V PV+++ ++L+S D ++ ++K+T+S
Sbjct: 194 DTLNIREAKDGIDFFFSQRNQAEKFIDFLNSVVPVKTKASQELISQDVHTSKASFKFTYS 253
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
E+ PIC++DL+ LP K+A GN+ PL++C K+ S+ LLDP TL+ C + A YWR+
Sbjct: 254 AELVPICKDDLVALPIKMAKQSGNISPLLLCHKIGTSVYLLDPQTLQTCDISAPIYWRAP 313
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
F SL +R+LVE++V+D+E ++ K+ LA+A VAR SD G ND + RTH+G
Sbjct: 314 FLSLTDTRELVEFVVMDIETTGTQ----KGKWTLAEATVARASDLGVNDRTYFTRTHMGR 369
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSW 420
LL PGD A+GY L N+ E + + +P+ ILIKK Y R++++ R+W
Sbjct: 370 LLQPGDSAMGYLLAGTVFNNTEYEAIENSNTYSSTIPDVILIKKHYPG---RRKNRKRNW 426
Query: 421 KLKSLDM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT 479
+LK ++ E + + DQE+M++EYE+FLRD+EE+ ELR ++LY+ + EM+
Sbjct: 427 QLKRMNKDEGELLPKKADQERMDQEYEQFLRDVEEDEELRATLALYKAQKRAEEEMSVAE 486
Query: 480 DGED--VPSVPLDELLADLD 497
ED P V +DELL D D
Sbjct: 487 TEEDDEAPHVDMDELLDDFD 506
>gi|384495175|gb|EIE85666.1| hypothetical protein RO3G_10376 [Rhizopus delemar RA 99-880]
Length = 478
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/474 (47%), Positives = 323/474 (68%), Gaps = 12/474 (2%)
Query: 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLN 92
MCV C+R+EVDITEG+ KH + C C+ YLQPP W+ AQLES+ELLT C+K+LK LN
Sbjct: 1 MCVNCIRNEVDITEGIPKHATLHFCRNCERYLQPPGIWVAAQLESRELLTLCLKKLKGLN 60
Query: 93 RVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANP 152
+VRLV+A FIWTEPHSKR+KVKL +QKEV IL+Q + VE+V C+ C+R+ A
Sbjct: 61 KVRLVDAGFIWTEPHSKRVKVKLTIQKEVFANTILQQIFEVEFVVSSQQCEECTRLAAQ- 119
Query: 153 DQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVE 212
+ W A VQ+RQ V H+RTF +LEQLILKH+A I + GIDF++G+R+ A+K VE
Sbjct: 120 NTWKAVVQVRQKVEHKRTFLFLEQLILKHNAHKDTTNIKEAKDGIDFYYGSRNQAIKMVE 179
Query: 213 FVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGP 272
F+ V P+R + +QL+S D ++ NYK+T+S EI PICR+DL+C+P K+A + GN+
Sbjct: 180 FLSAVVPMRYKTSEQLISKDIHTSVSNYKFTYSAEIVPICRDDLVCIPKKLANNFGNINR 239
Query: 273 LVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNV 332
L+IC +++NSI LLD TL + QY+R F +L +++ +VE+ VLDVE + V
Sbjct: 240 LLICTRISNSIHLLDVNTLATADVSTTQYYRQPFIALGSAKSMVEFYVLDVEPLGP---V 296
Query: 333 GGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK 392
G K +L D VAR+SDFG+ND F R+HLG LNPGD +GYDL AN N+ E D+
Sbjct: 297 DGKK-ILCDVHVARMSDFGRNDEEFIARSHLGAFLNPGDTVMGYDLTRANFNNDEFDQLS 355
Query: 393 GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGR-TDQEKMNKEYEEFLRD 451
LP+ +L++KSY + +K+SK R+WKL+ L EVD+ R DQ ++ + E F+RD
Sbjct: 356 QTELPDVVLVRKSYPAR--KKKSKQRNWKLQQLGKEVDEMLPRKQDQARIENDMELFMRD 413
Query: 452 LEENPELRFNISLYRNKD---YQPSEMASVTDGEDVPSVPLDELLADLDLKSDD 502
+EE+PE R NI++++N+ P E+ ++D E++P + L+E+L ++ + D+
Sbjct: 414 IEEDPEFRANINIFKNEGNNAVHPEEVEDMSD-EELPEISLEEMLDEMAIHMDE 466
>gi|19113989|ref|NP_593077.1| export adaptor Nmd3 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1175492|sp|Q09817.1|NMD3_SCHPO RecName: Full=60S ribosomal export protein nmd3
gi|1019815|emb|CAA91191.1| export adaptor Nmd3 (predicted) [Schizosaccharomyces pombe]
Length = 498
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/492 (43%), Positives = 310/492 (63%), Gaps = 26/492 (5%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
++LCC+CG+P PNAA MC+ C++ DIT G+ + ++HC EC+ Y+QPP W+ A
Sbjct: 20 STILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAP 79
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LES+EL+ C+K+L+ LN+VRLV+A FIWTEPHS+RIKVKL VQKE IL+QS+ VE
Sbjct: 80 LESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVE 139
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
+ + C C+R P W A Q+RQ V H+RTF YLEQ+ILKH A + I +
Sbjct: 140 FYVNNTQCPDCARTYT-PHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETK 198
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
GIDF+FG R+HA+K VEF+ V P+R + ++L+S D KSN NYK+T+S+EI PIC++
Sbjct: 199 DGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVPICKD 258
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
DL+CLP VA + GN+ LV+C KV +I LDP TL+ C + YWR+ F +L +
Sbjct: 259 DLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALADIPE 318
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYAL 374
L E+IV DV+++ KY LAD ++ + SD + T RTHLG +LN G+ L
Sbjct: 319 LTEFIVADVDLLGP----TNGKYALADVELIKSSDGSTHLT----RTHLGGILNAGNTVL 370
Query: 375 GYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKG 434
Y L N N+ D + +PE +++KK+Y + + K R+W+LK++ M+ +
Sbjct: 371 AYHLAVTNFNNEVYDTLREDSIPEVVIVKKTYPQ----TKKKNRNWRLKTIGMQKAEDVK 426
Query: 435 RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT---------DGEDVP 485
+ D E+ ++YE FL++LEE+PELR ++LY+ P + +V ED+P
Sbjct: 427 KQDIERQERDYELFLQNLEEDPELRQGVNLYK----APVKAIAVADTDMDEEDEVDEDIP 482
Query: 486 SVPLDELLADLD 497
+ +DELL D++
Sbjct: 483 QISVDELLDDVE 494
>gi|61806709|ref|NP_001013587.1| 60S ribosomal export protein NMD3 [Danio rerio]
gi|82178735|sp|Q5BLF0.1|NMD3_DANRE RecName: Full=60S ribosomal export protein NMD3
gi|60649637|gb|AAH90467.1| NMD3 homolog (S. cerevisiae) [Danio rerio]
Length = 505
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/502 (46%), Positives = 338/502 (67%), Gaps = 18/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC CG+P+ PN ANMCV+CLR++VDI+EG+ K V I C +C+ YLQPP +W++
Sbjct: 13 GNILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K+LK ++++VRL++A F+WTEPHSKRIK+KL +QKEV+NGAIL+Q + V
Sbjct: 73 LESRELLALCLKKLKASMSKVRLIDAGFLWTEPHSKRIKIKLTIQKEVMNGAILQQVFTV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
E+V Q MC+ C RV+A D W A VQ+RQ H++TF+YLEQLILKH +RI ++
Sbjct: 133 EFVVQGQMCEDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
+GIDF++ + HA K V+F+ P RS+ ++L+SHD SN +NYK TFSVEI P+C+
Sbjct: 192 HEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL P++A SLGN+G + +C++VT+SI L+DP TL+ +D +WR F SL + R
Sbjct: 252 DNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAEVDGSTFWRHPFNSLCSPR 311
Query: 314 QLVEY-----IVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+ ++ + + + + +K+ LA+ V + S+ + + RT +GHLLN
Sbjct: 312 QLEEFIIMDIDIIRDQRLGAGAGLKSNKHTLAEVWVQKTSEMDSSHQ-YHCRTFMGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
GD LG+D +AN ND L+K +P+ +LIKKSY+ KR++ R WKLK +D E
Sbjct: 371 IGDLVLGFDFANANINDEFLNKMNPQHVPDVVLIKKSYDR---MKRARKRVWKLKEMDRE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D + TD E ++Y EFL DLEE+ LR NI+++R+ P E S TD + P +
Sbjct: 428 KDAAD--TDDE---RQYTEFLEDLEEDEMLRKNINIFRDASKIPVE-ESDTDDDGAPRIS 481
Query: 489 LDELLADLDLK-SDDGEGDDSM 509
L E+L DL L + GEG D M
Sbjct: 482 LAEMLEDLSLSDATGGEGADMM 503
>gi|403265970|ref|XP_003925178.1| PREDICTED: 60S ribosomal export protein NMD3 [Saimiri boliviensis
boliviensis]
Length = 508
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 227/499 (45%), Positives = 321/499 (64%), Gaps = 32/499 (6%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC+CGIP++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+ LES
Sbjct: 33 LCCECGIPVSPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALES 92
Query: 78 KELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV
Sbjct: 93 RELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYV 152
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q MC C RV+A D W A +Q+RQ +LILK+ +RI ++ G
Sbjct: 153 VQSQMCGDCHRVEAK-DFWKAVIQVRQ------------KLILKYGMHQNTLRIKEIHDG 199
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC++++
Sbjct: 200 LDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNV 259
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +QL
Sbjct: 260 VCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADVDGSTFWSHPFNSLCHPKQLE 319
Query: 317 EYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
E+IV+D +V G+ K+ L + V + S+ + F RTHLGHLLNPGD
Sbjct: 320 EFIVMDCSIVRDIKRGAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLNPGD 378
Query: 372 YALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDD 431
LG+DL + N ND ++K +P+ +LIKKSY KR + R+WKLK L E ++
Sbjct: 379 LVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYNRT---KRQRRRNWKLKELAREREN 435
Query: 432 SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDE 491
TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P + L E
Sbjct: 436 MD--TDDE---RQYQDFLEDLEEDETIRKNVNIYRDSTI-PVE--SDTDDEGAPRISLAE 487
Query: 492 LLADLDLKSD-DGEGDDSM 509
+L DL + D GE SM
Sbjct: 488 MLEDLHISQDATGEEGTSM 506
>gi|58260848|ref|XP_567834.1| RNA binding protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134117191|ref|XP_772822.1| 60S ribosomal export protein NMD3 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255440|gb|EAL18175.1| hypothetical protein CNBK1940 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229915|gb|AAW46317.1| RNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 564
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/486 (46%), Positives = 308/486 (63%), Gaps = 32/486 (6%)
Query: 6 GMFTVPQTVGS---VLCCKCG-IPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
M P G +LC CG + + N A +CV CLR+ VDITEG+ K ++ C C+
Sbjct: 3 AMEYTPDAAGQESYILCADCGTVISSANGAGLCVGCLRNTVDITEGIPKEATLNFCRGCE 62
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRL-KNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
+L PP TWI Q ES+ELL C+K++ + L +VRL++A FIWTEPHS+RIK+K+ +QKE
Sbjct: 63 KFLSPPNTWIAVQPESRELLAICLKKIARPLMKVRLIDASFIWTEPHSRRIKLKITIQKE 122
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
VL +L+Q++ + V C SC+R+ A + W A+VQ+RQ VTH+RTF +LEQLILK
Sbjct: 123 VLAHTVLQQTFELTLVVHTGQCPSCTRLAAK-NTWKASVQVRQKVTHKRTFLWLEQLILK 181
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
H+A I I + G+DFF+ R++A+K EF+ V PVR + +QL+S D SN NY
Sbjct: 182 HNAHKDTINIAEKRDGLDFFYSERNNAIKMCEFLAGVVPVRVKSSEQLISSDTHSNTSNY 241
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ 300
K+T+SVEI P+C++DL+CLP +A + GN+ PL IC +V N+I LLDP TL+ + A
Sbjct: 242 KFTYSVEIVPVCKDDLVCLPKSLARAWGNISPLTICSRVGNTIHLLDPMTLQQTDVAAPV 301
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKN------- 353
YWR F SL T LVE+IVLDVE S V KYVLADAQV R S G N
Sbjct: 302 YWRQPFDSLTTVADLVEFIVLDVE-PSGPVR---GKYVLADAQVTRSSSTGNNADDDGMG 357
Query: 354 -DTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLR 412
D I+ RTHLG +L PGD LGY L +AN N + + +P+ IL+KK+Y + R
Sbjct: 358 DDGIYHTRTHLGGILQPGDTVLGYHLTNANFNSDSFEALESGRIPDVILVKKTYPNR--R 415
Query: 413 KRSKPRSWKLKSLDMEVDDSKGRT------------DQEKMNKEYEEFLRDLEENPELRF 460
K+S+PR+WKL+S+ E +D + T DQ+ + ++YE FLRDLEE+ E+R
Sbjct: 416 KKSRPRNWKLRSIAKEAEDVQDGTVGRGALGRRGGVDQKNVERDYELFLRDLEEDKEMRA 475
Query: 461 NISLYR 466
I+LY+
Sbjct: 476 VINLYK 481
>gi|296816070|ref|XP_002848372.1| 60S ribosomal export protein NMD3 [Arthroderma otae CBS 113480]
gi|238841397|gb|EEQ31059.1| nonsense-mediated mRNA decay protein 3 [Arthroderma otae CBS
113480]
Length = 523
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/511 (42%), Positives = 317/511 (62%), Gaps = 30/511 (5%)
Query: 8 FTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ A +C C++ +DI+EG+Q+ + C +C+ +LQ
Sbjct: 16 FHPQQQAATILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A LES+ELL C+++L+ L +VR+++A FIWTEPHSKR++VK+ +Q+E G
Sbjct: 76 PPAQWISAALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLRVKITIQQEAFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q++ VEYV C C++ + W A+VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 136 ILQQAFEVEYVVASQQCPECAK-SYTVNTWRASVQVRQKVPHKRTFLYLEQLILKHGAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I ++ G+DF+F R+HA K V+F+ VAP+R + +QL+S D +++ +YK TFS
Sbjct: 195 DTINIKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
E+ PIC++DL+ LP K+A SLGN+ PL +C +V SI LLDP TL+ + A YWRS
Sbjct: 255 AELIPICKDDLVALPIKLARSLGNISPLTLCYRVGTSINLLDPATLQTADIPAPIYWRSP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
F +L ++LVEY+V+D+E + +Y LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FANLADIQELVEYVVMDIEAIGQ----TSGRYHLAEATVARSSDLGVNDTTYFARTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNN-----DMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+PGD +GY L N N ++E G +P+ IL+KK Y K K++K R+W
Sbjct: 371 VLHPGDTVMGYHLTGTNFNNANFEEIEASNTYGSTIPDVILVKKHYPRK---KKNKNRNW 427
Query: 421 KLKSLDMEVDDSKGRTDQE--KMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASV 478
+LK LD E +D + Q ++ ++E FLRD+EE+ ELR ++LY+ K Q +
Sbjct: 428 RLKRLDREEEDERPSKKQSHNRLEDDFELFLRDVEEDAELRSTLALYKAKHSQKPKNVE- 486
Query: 479 TDGED------------VPSVPLDELLADLD 497
TD D VP + +DELL D +
Sbjct: 487 TDAMDMVEEEEEEDDDEVPKIDVDELLEDFE 517
>gi|326473522|gb|EGD97531.1| nonsense-mediated mRNA decay protein [Trichophyton tonsurans CBS
112818]
Length = 524
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/511 (42%), Positives = 323/511 (63%), Gaps = 29/511 (5%)
Query: 8 FTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ A +C C++ +DI+EG+Q+ + C +C+ +LQ
Sbjct: 16 FHPQQQAATILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A LES+ELL C+++L+ L +VR+++A FIWTEPHSKR+KVK+ +Q+E G
Sbjct: 76 PPAQWISAALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q++ VEYV C C++ + W A+VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 136 ILQQAFEVEYVVASQQCPECAK-SYTVNTWRASVQVRQKVPHKRTFLYLEQLILKHGAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I ++ G+DF+F R+HA K V+F+ VAP+R + +QL+S D +++ +YK TFS
Sbjct: 195 DTINIKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
E+ PIC++DL+ LP K+A SLGN+ PL +C +V SI +LDP TL+ + A YWRS
Sbjct: 255 AELIPICKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPAAIYWRSP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
F +L ++LVEY+V+D+E + +Y LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FANLADIQELVEYVVMDIEAIGQ----SSGRYHLAEATVARSSDLGVNDTTYFARTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+PGD +GY L N N+ ++ + G +P+ IL+KK Y KR ++K R+W
Sbjct: 371 ILHPGDTVMGYHLTGTNFNNANFEEIEASHTYGSTIPDVILVKKHYPRKR---KNKKRNW 427
Query: 421 KLKSLDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMA 476
+LK LD E +D SK +++ ++ ++E FLRD+EE+ ELR ++LY+ K Q P +
Sbjct: 428 RLKRLDREEEDERPSKKQSNNNRLEDDFEMFLRDVEEDAELRSTLALYKAKHNQKPKNVE 487
Query: 477 S----------VTDGEDVPSVPLDELLADLD 497
+ + ++VP + +DELL D +
Sbjct: 488 ADAMEMVEEEEEEEDDEVPQINVDELLEDFE 518
>gi|213408477|ref|XP_002175009.1| 60S ribosomal export protein NMD3 [Schizosaccharomyces japonicus
yFS275]
gi|212003056|gb|EEB08716.1| nonsense-mediated mRNA decay protein [Schizosaccharomyces japonicus
yFS275]
Length = 505
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/506 (43%), Positives = 318/506 (62%), Gaps = 21/506 (4%)
Query: 1 MAQDAGMFTVPQ--TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCP 58
M AG + T ++LCC+CG+P+ N A MC+ C++ DITEG+ + ++S+C
Sbjct: 5 MVNAAGFSYIASESTQSTILCCQCGVPIPQNPAAMCLDCIKMSTDITEGIPRDGMLSYCR 64
Query: 59 ECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQ 118
EC+ YLQPP W+ AQLES+EL+ C+K+L+ LN+VRL++A FIWTEPHS+R+KVKL VQ
Sbjct: 65 ECERYLQPPNVWVAAQLESRELMAICLKKLRGLNQVRLIDASFIWTEPHSRRVKVKLTVQ 124
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
KE IL+QS VVEYV C C+R P W A VQ+RQ V H+RTF YLEQ+I
Sbjct: 125 KEAFTNTILQQSMVVEYVVNYTQCPDCARTYT-PHIWKACVQVRQKVLHKRTFLYLEQVI 183
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
LK+ A + I + GIDFF+ R+HA+K +EF+ V P+RS+ ++L+S D KSN
Sbjct: 184 LKNRAHLNTVNIKEAKDGIDFFYSQRTHAIKMMEFLNAVVPIRSKSSEELISKDIKSNTA 243
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
+YK+T+S+EI PIC++DL+CLP +A + GN+ L++C KV +I +DP TL+ C +
Sbjct: 244 HYKFTYSIEIVPICKDDLVCLPKPLAKAHGNISQLLLCTKVGTTIHFIDPLTLQTCEMLP 303
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
YW F SL +L E+IV DV+ + K VLAD ++ + SD +
Sbjct: 304 TTYWHMPFPSLADIGELSEFIVADVDFLGP----TNGKNVLADVELIKSSD----GSTHM 355
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPR 418
RTHLG LL+ G+ L Y + N N+ D K ++P+ I++KK+Y KR K R
Sbjct: 356 ARTHLGALLSAGNTVLCYHMAITNFNNEIFDALKDNLIPDVIIVKKTYSNP---KRRKNR 412
Query: 419 SWKLKSLDMEVDD-SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQP----- 472
WKLKS+ ++ + + D E+ ++YE FLR+LEE+PELR NI+LY+N Y+P
Sbjct: 413 FWKLKSIGIDQGELEPKKQDLERQERDYELFLRNLEEDPELRQNINLYKNDAYRPPADNE 472
Query: 473 -SEMASVTDGEDVPSVPLDELLADLD 497
E D E+VP++ +DELL D++
Sbjct: 473 MEEDDEEIDDEEVPAISVDELLDDVE 498
>gi|194913036|ref|XP_001982614.1| GG12643 [Drosophila erecta]
gi|190648290|gb|EDV45583.1| GG12643 [Drosophila erecta]
Length = 521
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/507 (43%), Positives = 315/507 (62%), Gaps = 32/507 (6%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+ + PN ANMCV CLR+ VDITE + K ++ C C+ YLQPP WI+A LE
Sbjct: 25 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQASLE 84
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E+ G +L+Q +VVE+
Sbjct: 85 SRELLAICLKKLKGLKDVKLVDAGFIWTEQHSKRIKVKLTVHGEITGGTVLQQVFVVEFT 144
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q+ MC+ C R +A D W VQ+RQ +++TF+YLEQLILKH A + I G
Sbjct: 145 VQNQMCNDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEHGG 203
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ N +HA + V+F+ + P + K+L+SHD SNN+NYKY +SVEI+P+ ++
Sbjct: 204 LDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIAPVSKDSA 263
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K+ LGNL PLV+ +V++SI L+DP T + L + Y+R+ F+++ +QLV
Sbjct: 264 VCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAICNPKQLV 323
Query: 317 EYIVLDVEVV----------SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
EY+V+D++V+ +V+ K+ L D V R S+ G ND R+HLGHL
Sbjct: 324 EYVVMDIDVIMEKDRKTYPGQGQVSF---KHALCDIWVVRASELGINDNPIHTRSHLGHL 380
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
L GD +GY+ AN ND+E DK +P+ IL++K Y+ + R R WK+K L
Sbjct: 381 LKVGDSVMGYNTGEANINDLEFDKLSSDEIPDVILVRKHYDRQ---TRLSQRVWKIKHLA 437
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMASVTDGEDVP 485
E D + + D Y EFL DLEEN ++R +++YR+ + P E+ + G DVP
Sbjct: 438 AEATDERSKYD-------YHEFLDDLEENEDIRGQVNIYRDTNKTIPIELQAA--GGDVP 488
Query: 486 SVPLDELLADLDLKSDDGE-----GDD 507
+ L+E+L D+ L+ D E GDD
Sbjct: 489 QITLEEMLEDMTLECADDEMGEEGGDD 515
>gi|385304926|gb|EIF48926.1| putative 60s ribosomal subunit nuclear export factor nmd3 [Dekkera
bruxellensis AWRI1499]
Length = 516
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/501 (43%), Positives = 313/501 (62%), Gaps = 23/501 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q +VLCC CG+PM MC C++ VDIT+G+ + + +S+C C+ +LQPP W
Sbjct: 18 QNRATVLCCNCGVPMDGSTGLTMCYDCIKQNVDITQGIPREMSLSYCRNCERFLQPPSQW 77
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I AQLES+ELL C++RLK LN VRL++A F+WTEPHS R++VKL VQ E N IL+Q+
Sbjct: 78 IHAQLESRELLAICLRRLKGLNNVRLIDASFLWTEPHSMRLRVKLTVQGEAFNNVILQQT 137
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+VVE+V C C++ W +VQ+RQ V+H+RTF YLEQLILKH+A A I I
Sbjct: 138 FVVEFVVNAMQCPDCAK-SYTAHTWNTSVQIRQKVSHKRTFLYLEQLILKHNAHADTIAI 196
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DF++ ++HA++ ++F+ P++ + ++L++ D S YK+T+SVEI+P
Sbjct: 197 KETKDGLDFYYAKQNHAMRMIDFLRGCVPIKYKKSERLITEDSHSGTAKYKFTYSVEIAP 256
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP A S+GN+ V+C KV N I LDP T++ L YWR+ F SL
Sbjct: 257 ICKDDLVVLPKGFAKSMGNISRFVLCSKVANLIRFLDPLTMQTADLPGSVYWRAPFNSLS 316
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE++VLDVE + KY++AD VAR SD G ND + +R+HLG +L+PG
Sbjct: 317 DMSQLVEFMVLDVEPTGEQ----RGKYMMADVTVARSSDMGVNDQEYYVRSHLGAILHPG 372
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D LGY L ++N N D LP+ +L+KK Y KR KR + R+WKLK + E +
Sbjct: 373 DSVLGYFLANSNFNSALYDSLDTENLPDVVLVKKYY--KRSNKRXR-RNWKLKRMAREKE 429
Query: 431 ----DSKGRT------DQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASV-- 478
D GR ++EK ++YE FL DLEE+ ELR ++++Y+ D + +S
Sbjct: 430 EIGGDRSGRXSKTEQQEEEKAERDYEIFLEDLEEDKELRQSVNMYKANDTTNAXXSSAPX 489
Query: 479 TDGE--DVPSVPLDELLADLD 497
+D E D P V +DELL +LD
Sbjct: 490 SDSEDSDAPEVNVDELLDELD 510
>gi|17137506|ref|NP_477332.1| Nonsense-mediated mRNA 3 [Drosophila melanogaster]
gi|2894111|emb|CAA15695.1| EG:152A3.1 [Drosophila melanogaster]
gi|7290283|gb|AAF45744.1| Nonsense-mediated mRNA 3 [Drosophila melanogaster]
gi|16197917|gb|AAL13723.1| GM14705p [Drosophila melanogaster]
gi|220944802|gb|ACL84944.1| Nmd3-PA [synthetic construct]
gi|220954642|gb|ACL89864.1| Nmd3-PA [synthetic construct]
Length = 521
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/499 (43%), Positives = 313/499 (62%), Gaps = 27/499 (5%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+ + PN ANMCV CLR+ VDITE + K ++ C C+ YLQPP WI+A LE
Sbjct: 25 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQAALE 84
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E++ G +L+Q +VVE+
Sbjct: 85 SRELLAICLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEIIGGTMLQQVFVVEFT 144
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q+ MC+ C R +A D W VQ+RQ +++TF+YLEQLILKH A + I G
Sbjct: 145 VQNQMCNDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEHGG 203
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ N +HA + V+F+ + P + K+L+SHD SNN+NYKY +SVEI+P+ ++
Sbjct: 204 LDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIAPVSKDSA 263
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K+ LGNL PLV+ +V++SI L+DP T + L + Y+R+ F+++ +QLV
Sbjct: 264 VCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAVCNPKQLV 323
Query: 317 EYIVLDVEVV----------SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
EY+V+D++V+ +V+ K+ L D V R S+ G ND R+HLGHL
Sbjct: 324 EYVVMDIDVIMEKDRKTYPGQGQVSF---KHALCDIWVVRASELGINDNPIHTRSHLGHL 380
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
L GD +GY+ AN ND+E DK +P+ IL++K Y+ + R R WK+K L
Sbjct: 381 LKVGDSVMGYNTGEANINDLEFDKLSSDEIPDVILVRKHYDRQ---TRLSQRVWKIKHLA 437
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMASVTDGEDVP 485
E D + + D Y EFL DLEEN ++R +++YR+ + P E+ + G DVP
Sbjct: 438 AEATDERSKYD-------YHEFLDDLEENEDIRGQVNIYRDTNKTIPIEVQAA--GGDVP 488
Query: 486 SVPLDELLADLDLKSDDGE 504
+ L+E+L D+ L+ D E
Sbjct: 489 QITLEEMLEDMTLECADDE 507
>gi|332374912|gb|AEE62597.1| unknown [Dendroctonus ponderosae]
Length = 500
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/493 (45%), Positives = 307/493 (62%), Gaps = 28/493 (5%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
SV CC+CG+ + N ANMCV CLR VDITEG+ + C C+ Y QPP WI L
Sbjct: 15 SVPCCQCGVIIEANPANMCVGCLRVHVDITEGISDQATLYFCRGCERYHQPPSEWIHCAL 74
Query: 76 ESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
ES+ELLT C+KRLK LNRV+L +A F+WTEPHSKRIKVKL + EV+ G +LE+S++VE+
Sbjct: 75 ESRELLTLCLKRLKGLNRVKLFDASFVWTEPHSKRIKVKLVIHAEVM-GVVLEKSFIVEF 133
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
MCD C R +A D W A VQ+RQ +++TF+YLEQLILKH A I +
Sbjct: 134 TVNHQMCDDCHRREAK-DFWRALVQVRQRADNKKTFYYLEQLILKHKVHDNATEIKPVHG 192
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
GIDFFF +HA K ++F+ V P + H K+L+SHD SN +NYK+T+ +EI PI ++
Sbjct: 193 GIDFFFATEAHAKKMIDFLVTVLPCKYHHSKKLISHDIHSNIYNYKFTYCLEIVPISKDS 252
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQL 315
+ICLP K+ SLG + P+ + +VTN+I L+DP + +++ YWRS F S+ +QL
Sbjct: 253 VICLPKKMTQSLGGISPICLVYRVTNTIHLIDPSRGQVAEVNSTHYWRSQFNSICNPKQL 312
Query: 316 VEYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
VEYIVLD+E + + + +K+VLAD + + S+ G RTHLGH+L
Sbjct: 313 VEYIVLDIEPIMDKDRKCFPGQGMISTKHVLADVWIVKASELGITTASIHTRTHLGHILK 372
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL-DM 427
GD LGY++ N ND DK +P+ IL+KKS+++ R KR + R+WKLK L D
Sbjct: 373 LGDCVLGYNIADTNVNDPHFDKLDKATVPDVILVKKSFDD-RESKRMRKRNWKLKRLADH 431
Query: 428 EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDV--- 484
+V+ + G E+ EF+ DLEE+PELR N+++++N S A TD D
Sbjct: 432 DVESTDG--------NEFNEFMDDLEEDPELRRNVNIFKN-----SLFAVDTDDTDYDPN 478
Query: 485 -PSVPLDELLADL 496
P + LDE+L DL
Sbjct: 479 KPCITLDEMLDDL 491
>gi|408399668|gb|EKJ78764.1| hypothetical protein FPSE_01043 [Fusarium pseudograminearum CS3096]
Length = 517
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/494 (42%), Positives = 319/494 (64%), Gaps = 18/494 (3%)
Query: 14 VGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
++LCC CG P+ A+ +C C++ VDI++G+Q+ ++ C +CD +L PP +WI
Sbjct: 21 AATILCCNCGAPIDGTASTGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLMPPTSWI 80
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A ES+ELL C+K+L+ LN+VR+V+A FIWTEPHS+RI+VK+ +Q EV +G +L+Q++
Sbjct: 81 VASPESRELLALCLKKLRGLNKVRIVDASFIWTEPHSRRIRVKITIQDEVQDGMLLQQTF 140
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
V YV C C++ + W AAVQ+RQ V H+RTF +LEQLI+KH A + I
Sbjct: 141 EVIYVVAYQQCPECAK-SYTANVWRAAVQVRQKVLHKRTFLFLEQLIMKHGAHKDTLNIR 199
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ GIDFFF R+ A KF++F+ V PV+++ ++L+S D ++ ++K+T+S E+ PI
Sbjct: 200 EAKDGIDFFFSQRNQAEKFIDFLNSVVPVKTKASQELISQDVHTSKASFKFTYSAELVPI 259
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C++DL+ LP K+A GN+ PL++C K+ S+ LLDP TL+ C + A YWR+ F SL
Sbjct: 260 CKDDLVALPIKMAKQSGNISPLLLCHKIGTSVYLLDPQTLQTCDISAPIYWRAPFLSLTD 319
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
+R+LVE++V+D+E ++ K+ LA+A VAR SD G ND + RTH+G LL PGD
Sbjct: 320 TRELVEFVVMDIETTGTQ----KGKWTLAEATVARASDLGVNDRTYFTRTHMGRLLQPGD 375
Query: 372 YALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
A+GY L N+ E + + +P+ ILIKK Y R++++ R+W+LK ++
Sbjct: 376 SAMGYLLAGTVFNNTEYEAIENSNTYSSTIPDVILIKKHYPG---RRKNRKRNWQLKRMN 432
Query: 427 M-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED-- 483
E + + DQE+M++EYE+FLRD+EE+ ELR ++LY+ + EM+ ED
Sbjct: 433 KDEGELLPKKADQERMDQEYEQFLRDVEEDEELRATLALYKAQKRAEEEMSVAETEEDDE 492
Query: 484 VPSVPLDELLADLD 497
P V ++ELL D D
Sbjct: 493 APHVDMEELLDDFD 506
>gi|345571064|gb|EGX53879.1| hypothetical protein AOL_s00004g538 [Arthrobotrys oligospora ATCC
24927]
Length = 523
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/512 (41%), Positives = 329/512 (64%), Gaps = 34/512 (6%)
Query: 10 VPQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
P +VLCC CG+PM + MC C+++ VDI+EG+Q+ + C CD +LQPP+
Sbjct: 13 APTGGATVLCCNCGVPMDGTSGMAMCYDCIKTTVDISEGVQREATLHFCRGCDRFLQPPQ 72
Query: 69 TWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
WI A ES+ELL C+++L+ LN+VR+++A FIWTEPHS+R+KVK+ VQ+E IL+
Sbjct: 73 HWITAAPESRELLALCLRKLRGLNKVRIIDASFIWTEPHSRRVKVKITVQQEAFEKTILQ 132
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
QS+ VEYV C C++ + W A +Q+RQ V+H+RTF +LEQLILKH+A I
Sbjct: 133 QSFEVEYVVAYQQCPDCAK-SYTANTWRACIQMRQKVSHKRTFLWLEQLILKHNAHRDCI 191
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
I ++ G+DFFF R+HA K ++F+ V+P++++ ++L+S D ++ ++K+T+SVE+
Sbjct: 192 NIREVKDGLDFFFLQRTHAQKMLDFLSSVSPIKTKKSEELISQDIHTSTKSFKFTYSVEL 251
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PIC++DL+ LP K+A SLGN+ P+V+C KV N+ +DP TL+ C + YWR+ F S
Sbjct: 252 IPICKDDLVVLPIKMAKSLGNINPIVLCNKVGNATHYIDPNTLQTCEIATPVYWRAPFGS 311
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
+ + L E+IVLD+E + ++VLADA +A+ SD G +DT + IRTHLG +L+
Sbjct: 312 IADASVLTEFIVLDIEPLGPT----KGRHVLADATIAKASDMGVSDTTYLIRTHLGAVLH 367
Query: 369 PGDYALGYDLYSANNNDM---ELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
PGD A+GY L N++ E+++++ +PE IL+KK Y RK+ K R+W+LK
Sbjct: 368 PGDSAMGYFLSGTVFNNIHFEEVERHEPSRIPEVILVKKHYPR---RKKHKSRNWRLKR- 423
Query: 426 DMEVDDSK---GRTDQEKMNKEYEEFLRDLEENPELRFNISLYR-NKDYQPSEMASV--- 478
M D+ + + DQEKM +E+E F+RD+EE+ +LR ++LY+ NK +M +
Sbjct: 424 -MARDEGELLPKKADQEKMEREFEMFMRDVEEDEDLRQTLALYKSNKPRGAGKMEGIETA 482
Query: 479 -----------TDGED--VPSVPLDELLADLD 497
DGE+ VP + +DELL D+D
Sbjct: 483 ESGAMEVDGETIDGENDSVPDIDVDELLDDMD 514
>gi|321264003|ref|XP_003196719.1| nonsense-mediated mRNA decay protein 3; putative [Cryptococcus
gattii WM276]
gi|317463196|gb|ADV24932.1| Nonsense-mediated mRNA decay protein 3; putative [Cryptococcus
gattii WM276]
Length = 565
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/472 (46%), Positives = 302/472 (63%), Gaps = 29/472 (6%)
Query: 17 VLCCKCG-IPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
+LC CG + + N A +CV CLR+ VDITEG+ K ++ C C+ +L PP TW+ Q
Sbjct: 17 ILCADCGTVISSANGAGLCVGCLRNTVDITEGIPKEATLNFCRGCERFLSPPNTWVAVQP 76
Query: 76 ESKELLTFCVKRL-KNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
ES+ELL C+K++ + L +VRL++A FIWTEPHS+RIK+K+ +QKEVL +L+Q++ +
Sbjct: 77 ESRELLAICLKKIARPLMKVRLIDASFIWTEPHSRRIKLKITIQKEVLAHTVLQQTFELT 136
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
V C SC+R+ A + W A+VQ+RQ VTH+RTF +LEQLILKH+A I I +
Sbjct: 137 LVVHTGQCPSCTRLAAK-NTWKASVQVRQKVTHKRTFLWLEQLILKHNAHKDTINIAEKR 195
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DFF+ R++A+K EF+ V PVR + +QL+S D SN NYK+T+SVEI P+C++
Sbjct: 196 DGLDFFYTERNNAIKMCEFLAGVVPVRVKSSEQLISSDTHSNTSNYKFTYSVEIVPVCKD 255
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
DL+CLP +A + GN+ PL IC +V N+I LLDP TL+ + A YWR F SL T
Sbjct: 256 DLVCLPKSLARAWGNISPLTICSRVGNTIHLLDPMTLQQTDVTAPVYWRQPFDSLTTVAD 315
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKND--------TIFSIRTHLGHL 366
LVE+IVLDVE S V KYVLADAQV R S G N I+ RTHLG +
Sbjct: 316 LVEFIVLDVE-PSGPVR---GKYVLADAQVTRSSSTGNNTDDDGMGDDGIYHTRTHLGGI 371
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
L PGD LGY L + N N + + +P+ IL+KK+Y + RK+SKPR WKL+S+
Sbjct: 372 LQPGDTVLGYHLTNTNFNSDSFEALESGRIPDVILVKKTYPNR--RKKSKPRHWKLRSIA 429
Query: 427 MEVDDSKGRT------------DQEKMNKEYEEFLRDLEENPELRFNISLYR 466
E +D + T DQ+ + ++YE FLRDLEE+ E+R I+LY+
Sbjct: 430 KEAEDVQDGTVGRGALGRRGGVDQKNVERDYELFLRDLEEDKEMRAVINLYK 481
>gi|171676746|ref|XP_001903325.1| hypothetical protein [Podospora anserina S mat+]
gi|170936440|emb|CAP61097.1| unnamed protein product [Podospora anserina S mat+]
Length = 606
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/508 (43%), Positives = 318/508 (62%), Gaps = 23/508 (4%)
Query: 5 AGMFTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDC 62
A M +T ++LCC CG P+ +A MC C++ VDI++ + + I C +CD
Sbjct: 100 APMLGTARTGATILCCNCGSPIDGTSSAGAMCYDCIKLTVDISKTIPREAHIQFCRDCDR 159
Query: 63 YLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVL 122
+L PP TW+ A ESKELL C+KRL+N+ +VR+VNAEFIWTEPHS+RIKVK+ +Q V
Sbjct: 160 WLMPPNTWVNAAPESKELLALCLKRLRNITKVRIVNAEFIWTEPHSRRIKVKITIQDSVA 219
Query: 123 NGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHD 182
+G +++QS+ V YV C C++ + W A+VQ+RQ V H+RTF LEQLILKH
Sbjct: 220 DGVLMQQSFEVVYVVGTQQCKDCAK-SYTANVWRASVQVRQKVPHKRTFLLLEQLILKHQ 278
Query: 183 AAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKY 242
A I I + GIDF+F +R+ A F+ F+ V P+ + +QL+S D + + +YK+
Sbjct: 279 AHRDTINIKEEKGGIDFYFAHRNQAEAFLSFLKSVIPIFVKDSRQLISQDNHTGDKSYKF 338
Query: 243 TFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW 302
+SVEI PICR+DL+ LP K+A S+GN+ PLV+C ++ S+ LLDP TL+ + +D +W
Sbjct: 339 NYSVEIVPICRDDLVALPLKLARSIGNITPLVLCHRIGTSVNLLDPNTLQTAEISSDVFW 398
Query: 303 RSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTH 362
R+ F+ L + LVE+IV+DVE NV K+VL++ QVAR +D G ND + RTH
Sbjct: 399 RAPFQPLAGTPDLVEFIVMDVE----PTNVRKGKWVLSEVQVARAADLGVNDHTYFTRTH 454
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKP 417
LG+LL+ GD LGY L N N LD + G +P+ IL+KK Y R++++
Sbjct: 455 LGNLLHAGDSVLGYMLSGTNFNSSALDAIENSRAFGSTIPDVILVKKHYPN---RRKNRK 511
Query: 418 RSWKLKSLDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRN--KDYQPSE 474
R+WKLK + + + + DQEKM EYE FLRD+EE+ ELR ++LY+N K Q ++
Sbjct: 512 RNWKLKRMAKDEGELLPKAADQEKMEAEYEMFLRDVEEDEELRAALALYKNTKKKQQDAD 571
Query: 475 MASVTDGE-----DVPSVPLDELLADLD 497
S+ + E D P + +DELL D D
Sbjct: 572 AMSIAETEMTGVDDGPRINMDELLDDFD 599
>gi|405119247|gb|AFR94020.1| RNA binding protein [Cryptococcus neoformans var. grubii H99]
Length = 565
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/472 (46%), Positives = 302/472 (63%), Gaps = 29/472 (6%)
Query: 17 VLCCKCG-IPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
+LC CG + + N A +CV CLR+ VDITEG+ K ++ C C+ +L PP TW+ Q
Sbjct: 17 ILCADCGTVISSANGAGLCVGCLRNTVDITEGIPKEATLNFCRGCERFLSPPNTWVTVQP 76
Query: 76 ESKELLTFCVKRL-KNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
ES+ELL C+K++ + L +VRL++A FIWTEPHS+RIK+K+ +QKEVL +L+Q++ +
Sbjct: 77 ESRELLAICLKKIARPLMKVRLIDASFIWTEPHSRRIKLKITIQKEVLAHTVLQQTFELT 136
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
V C SC+R+ A + W A+VQ+RQ VTH+RTF +LEQLILKH+A I I +
Sbjct: 137 LVVHTGQCPSCTRLAAK-NTWKASVQVRQKVTHKRTFLWLEQLILKHNAHKDTINIAEKR 195
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DF + R++A+K EF+ V PVR + +QL+S D SN NYK+T+SVEI P+C++
Sbjct: 196 DGLDFLYSERNNAIKMCEFLAGVVPVRVKSSEQLISSDTHSNTSNYKFTYSVEIVPVCKD 255
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
DL+CLP +A + GN+ PL IC +V N+I LLDP TL+ + A YWR F SL T
Sbjct: 256 DLVCLPKSLARAWGNISPLTICSRVGNTIHLLDPMTLQQTDVTAPVYWRQPFDSLTTVAD 315
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKND--------TIFSIRTHLGHL 366
LVE+IVLD+E S V KYVLADAQV R S G N I+ RTHLG +
Sbjct: 316 LVEFIVLDIE-PSGPVR---GKYVLADAQVTRSSSTGNNTDDDGMGDDGIYHTRTHLGGI 371
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
L PGD LGY L +AN N + + +P+ IL+KK+Y + RK+SKPR WKL+S+
Sbjct: 372 LQPGDTVLGYHLTNANFNSDSFEALESGRIPDVILVKKTYPNR--RKKSKPRHWKLRSIA 429
Query: 427 MEVDDSKGRT------------DQEKMNKEYEEFLRDLEENPELRFNISLYR 466
E +D + T DQ+ + ++YE FLRDLEE+ E+R I+LY+
Sbjct: 430 KEAEDVQDGTVGRGALGRRGGVDQKNVERDYELFLRDLEEDKEMRAVINLYK 481
>gi|71002662|ref|XP_756012.1| nonsense-mediated mRNA decay protein 3 [Aspergillus fumigatus
Af293]
gi|66853650|gb|EAL93974.1| nonsense-mediated mRNA decay protein 3 [Aspergillus fumigatus
Af293]
Length = 532
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/530 (40%), Positives = 322/530 (60%), Gaps = 41/530 (7%)
Query: 8 FTVPQTV--GSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
F PQ ++LCC CG P+ +A +C C+R VDI++G+ + ++ C +C+ +
Sbjct: 11 FAAPQEAVSATILCCNCGAPIDGTTSAGALCQDCVRLTVDISQGIPREGVLHFCRDCERW 70
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
LQPP W+ A LESKELL C+++L+ LN+VR+++A FIWTEPHS+RIKVK+ +Q+E
Sbjct: 71 LQPPSGWVSAALESKELLALCLRKLRGLNKVRIIDASFIWTEPHSRRIKVKITIQQEAFQ 130
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
G I++Q++ VEYV C C++ + + W A+VQ+RQ V H+RTF YLEQLILKH+A
Sbjct: 131 GTIVQQAFEVEYVVHTQQCPDCAKSYTH-NTWRASVQVRQKVPHKRTFLYLEQLILKHNA 189
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
+ I + G+DFFF R+HA K V+F+ VAP++ + ++L+S D ++ +YK+T
Sbjct: 190 HQDTVNIKEAKDGLDFFFAQRNHAEKMVDFLSSVAPIKVKKSQELISMDIHTSTKSYKFT 249
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
FSVE+ PIC++DL+ LP K+A SLGN+ PL +C +V+ S+ L+DP TL+ + YWR
Sbjct: 250 FSVELVPICKDDLVALPIKLARSLGNISPLALCHRVSTSVNLIDPNTLQTAEVPTAVYWR 309
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
+ FK+L +LVE+I++D+E V ++ LA+A VAR SD G N+ + RTHL
Sbjct: 310 APFKNLADVTELVEFIIMDIEPVGR----SNGRFHLAEATVARASDLGSNNQTYFTRTHL 365
Query: 364 GHLLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPR 418
G +L+ GD LGY L N ND +E +P+ +L+KK Y K K K R
Sbjct: 366 GGILHVGDSVLGYHLTGTNFNDPNFEAIEASSQYSSTIPDVVLVKKHYARK---KNKKTR 422
Query: 419 SWKLKSLDMEVDDS-----------KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
+W+LK + E ++ K ++E+M ++E FLRD+EE+ ELR + LY+N
Sbjct: 423 NWRLKRMAREYEEEALQQQGASISRKQEQERERMEADFEMFLRDVEEDQELRSTLQLYKN 482
Query: 468 KDYQPSEMASVTDGED------------VPSVPLDELLADLD-LKSDDGE 504
K+ +P+ V G P + ++ELL D D L DD E
Sbjct: 483 KNARPNNRMQVEGGAGGMEMDEDESDDDAPKISMEELLDDFDELNMDDEE 532
>gi|327300090|ref|XP_003234738.1| 60S ribosomal export protein NMD3 [Trichophyton rubrum CBS 118892]
gi|326463632|gb|EGD89085.1| nonsense-mediated mRNA decay protein [Trichophyton rubrum CBS
118892]
Length = 525
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/512 (42%), Positives = 322/512 (62%), Gaps = 30/512 (5%)
Query: 8 FTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ A +C C++ +DI+EG+Q+ + C +C+ +LQ
Sbjct: 16 FHPQQQAATILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A LES+ELL C+++L+ L +VR+++A FIWTEPHSKR+KVK+ +Q+E G
Sbjct: 76 PPAQWISAALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q++ VEYV C C++ + W A+VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 136 ILQQAFEVEYVVASQQCPECAK-SYTVNTWRASVQVRQKVPHKRTFLYLEQLILKHGAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I ++ G+DF+F R+HA K V+F+ VAP+R + +QL+S D +++ +YK TFS
Sbjct: 195 DTINIKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
E+ PIC++DL+ LP K+A SLGN+ PL +C +V SI +LDP TL+ + + YWRS
Sbjct: 255 AELIPICKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPSAIYWRSP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
F +L ++LVEY+V+D+E + +Y LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FANLADIQELVEYVVMDIEAIGQ----SSGRYHLAEATVARSSDLGVNDTTYFARTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+PGD +GY L N N+ ++ + G +P+ IL+KK Y KR ++K R+W
Sbjct: 371 ILHPGDTVMGYHLTGTNFNNANFEEIEASHTYGSTIPDVILVKKHYPRKR---KNKKRNW 427
Query: 421 KLKSLDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMA 476
+LK LD E +D SK + + ++ ++E FLRD+EE+ ELR ++LY+ K Q P +
Sbjct: 428 RLKRLDREEEDERPSKKQNNNNRLEDDFEMFLRDVEEDAELRSTLALYKAKHNQKPKNVE 487
Query: 477 S-----------VTDGEDVPSVPLDELLADLD 497
+ D ++VP + +DELL D +
Sbjct: 488 ADAMEMVEEEEEEEDDDEVPEINVDELLEDFE 519
>gi|392580176|gb|EIW73303.1| hypothetical protein TREMEDRAFT_59468 [Tremella mesenterica DSM
1558]
Length = 576
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/481 (45%), Positives = 308/481 (64%), Gaps = 41/481 (8%)
Query: 17 VLCCKCGIPMA-PNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
+LC CG P++ N A +CV CL++ VDITE + K ++ C C+ +L PP+TWI AQ
Sbjct: 17 ILCADCGTPISSANGAGLCVGCLKNTVDITEDIPKEAALNFCRGCERFLSPPQTWIHAQP 76
Query: 76 ESKELLTFCVKRL-KNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
ES+ELL C+K++ + L +VRLV+A F+WTEPHS+R+KVK+ +QKEVL +L+ +V+
Sbjct: 77 ESRELLAICLKKIARPLMKVRLVDASFVWTEPHSRRVKVKITIQKEVLANTVLQDDFVLT 136
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
V C SC+R+ A + W A VQ+RQ VTH+RTF +LEQLILKH+A + I++
Sbjct: 137 LVVHSGQCPSCTRLAAK-NTWRATVQVRQKVTHKRTFLWLEQLILKHNAHKDTVNISEKR 195
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DFF+ R+ A+K VEF+ V PVRS+ +QL+S D SN NYK+T+SVEI P+C++
Sbjct: 196 DGLDFFYSERNDAIKMVEFLAGVVPVRSKGSEQLISSDTHSNTSNYKFTYSVEIVPVCKD 255
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
DL+CLP +A + GN+ PL +C +V N+I LLDP TL+ + + YWR F SL T
Sbjct: 256 DLVCLPRTLAKAWGNIRPLTLCSRVGNTIHLLDPSTLQQTDVSSPVYWRQPFDSLATVSD 315
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGK------------NDTIFSIRTH 362
LVE++VLDVE N+ KYVLAD QV R S +D IF RTH
Sbjct: 316 LVEFVVLDVEY----TNITRGKYVLADVQVMRSSTGSTTKASSDDDEEMGHDGIFYTRTH 371
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGL-----VLPETILIKKSYEEKRLRKRSKP 417
LG ++ PGD LGY L +AN N+ + Y+ L LP+ IL+KK+Y + RK+SKP
Sbjct: 372 LGGIIQPGDTVLGYHLTNANFNN---EAYEALEQSREALPDVILVKKTYPSR--RKKSKP 426
Query: 418 RSWKLKSLDMEVDDS------------KGRTDQEKMNKEYEEFLRDLEENPELRFNISLY 465
R WKL+S+ E +D+ +G DQ+ + ++YE FLRDLEE+ E+R I+LY
Sbjct: 427 RGWKLRSIAKEAEDAGDGVVGRGALGRRGGVDQKNVERDYELFLRDLEEDKEMRAAINLY 486
Query: 466 R 466
+
Sbjct: 487 K 487
>gi|159130065|gb|EDP55179.1| nonsense-mediated mRNA decay protein 3 [Aspergillus fumigatus
A1163]
Length = 532
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/530 (40%), Positives = 322/530 (60%), Gaps = 41/530 (7%)
Query: 8 FTVPQTV--GSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
F PQ ++LCC CG P+ +A +C C+R VDI++G+ + ++ C +C+ +
Sbjct: 11 FAAPQEAVSATILCCNCGAPIDGTTSAGALCQDCVRLTVDISQGIPREGVLHFCRDCERW 70
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
LQPP W+ A LESKELL C+++L+ LN+VR+++A FIWTEPHS+RIKVK+ +Q+E
Sbjct: 71 LQPPSGWVSAALESKELLALCLRKLRGLNKVRIIDASFIWTEPHSRRIKVKITIQQEAFQ 130
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
G I++Q++ VEYV C C++ + + W A+VQ+RQ V H+RTF YLEQLILKH+A
Sbjct: 131 GTIVQQAFEVEYVVHTQQCPDCAKSYTH-NTWRASVQVRQKVPHKRTFLYLEQLILKHNA 189
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
+ I + G+DFFF R+HA K V+F+ VAP++ + ++L+S D ++ +YK+T
Sbjct: 190 HQDTVNIKEAKDGLDFFFAQRNHAEKMVDFLSSVAPIKVKKSQELISMDIHTSTKSYKFT 249
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
FSVE+ PIC++DL+ LP K+A SLGN+ PL +C +V+ S+ L+DP TL+ + YWR
Sbjct: 250 FSVELVPICKDDLVALPIKLARSLGNISPLALCHRVSTSVNLIDPNTLQTAEVPTAVYWR 309
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
+ FK+L +LVE+I++D+E V ++ LA+A VAR SD G N+ + RTHL
Sbjct: 310 APFKNLADVTELVEFIIMDIEPVGR----SNGRFHLAEATVARASDLGSNNQTYFTRTHL 365
Query: 364 GHLLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPR 418
G +L+ GD LGY L N ND +E +P+ +L+KK Y K K K R
Sbjct: 366 GGILHVGDSVLGYHLTGTNFNDPNFEAIEASSQYSSTIPDVVLVKKHYARK---KNKKTR 422
Query: 419 SWKLKSLDMEVDDS-----------KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
+W+LK + E ++ K ++E+M ++E FLRD+EE+ ELR + LY+N
Sbjct: 423 NWRLKRMAREYEEEALQQQGASISRKQEQERERMEADFEMFLRDVEEDQELRSTLQLYKN 482
Query: 468 KDYQPSEMASVTDGED------------VPSVPLDELLADLD-LKSDDGE 504
K+ +P+ V G P + ++ELL D D L DD E
Sbjct: 483 KNARPNNRMRVEGGAGGMEMDEDESDDDAPKISMEELLDDFDELNMDDEE 532
>gi|322778783|gb|EFZ09199.1| hypothetical protein SINV_05229 [Solenopsis invicta]
Length = 497
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/493 (45%), Positives = 318/493 (64%), Gaps = 18/493 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
Q G +LCC+CG+ + PN ANMCV CLR+ VDITEG+ K I C C+ YLQPP WI
Sbjct: 11 QKKGMILCCECGLLIEPNPANMCVGCLRTHVDITEGIPKQATIQFCKSCERYLQPPADWI 70
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A LESKELL+ C+K+LK LNRV+L++A F+WTEPHSKR+KVKL V EVL G +L+Q +
Sbjct: 71 HAALESKELLSLCLKKLKGLNRVKLIDASFVWTEPHSKRLKVKLTVHAEVLGGTVLQQVF 130
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
VVEYV MC+ C RV+A D W A VQ+RQ T+++TF+YLEQLILKH A + I
Sbjct: 131 VVEYVVNHQMCEDCHRVEAK-DYWRACVQVRQRATNKKTFYYLEQLILKHKAHEHTLGIK 189
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ G+DFF+ N + A K V+F+ V P H K+L+SHD SN +NYK+TFSVEI P+
Sbjct: 190 PIHDGLDFFYANEATARKMVDFLMTVMPCHYNHSKKLISHDCHSNLYNYKFTFSVEIVPL 249
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
++ ++CLP K+A LG + P+ + ++TNS+ L+D + + + A YWR++F S+
Sbjct: 250 SKDSVVCLPRKLAQQLGGISPICLVYRITNSVHLIDFLSGQIAEISATVYWRNNFNSICD 309
Query: 312 SRQLVEYIVLDVEVVSS---EVNVG----GSKYVLADAQVARVSDFGKNDTIFSIRTHLG 364
+QL EYIV+D+E + + ++ G +K+++ADA + + S+ G ND RTHLG
Sbjct: 310 PKQLTEYIVMDIEPIKNKDRKIFPGQGSISNKHIIADAWLVKASELGINDNPTHTRTHLG 369
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
H+L PGD LGY L +N ND +K ++P+ +L+KK Y + +R K R WKLK
Sbjct: 370 HILKPGDSVLGYTLKESNINDTNFEKLSEDLIPDIVLVKKFYNHNKAARR-KARVWKLKH 428
Query: 425 LDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN-KDYQPSEMASVTDGED 483
+ EV N EY EFL +LEE+PELR NI++YR+ + + P + +
Sbjct: 429 ITDEV------ASMSTENNEYNEFLDELEEDPELRQNINIYRDIRKHIPVDTNEIDPS-- 480
Query: 484 VPSVPLDELLADL 496
+P + L+E++ DL
Sbjct: 481 IPQITLEEMMDDL 493
>gi|326480255|gb|EGE04265.1| nonsense-mediated mRNA decay protein 3 [Trichophyton equinum CBS
127.97]
Length = 524
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/511 (41%), Positives = 322/511 (63%), Gaps = 29/511 (5%)
Query: 8 FTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ A +C C++ +DI+EG+Q+ + C +C+ +LQ
Sbjct: 16 FHPQQQAATILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A LES+ELL C+++L+ L +VR+++A FIWTEPHSKR+KVK+ +Q+E G
Sbjct: 76 PPAQWISAALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q++ VEYV C C++ + W ++VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 136 ILQQAFEVEYVVASQQCPECAK-SYTVNTWRSSVQVRQKVPHKRTFLYLEQLILKHGAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I ++ G+DF+F R+HA K V+F+ VAP+R + +QL+S D +++ +YK TFS
Sbjct: 195 DTINIKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
E+ P C++DL+ LP K+A SLGN+ PL +C +V SI +LDP TL+ + A YWRS
Sbjct: 255 AELIPTCKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPAAIYWRSP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
F +L ++LVEY+V+D+E + +Y LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FANLADIQELVEYVVMDIEAIGQ----SSGRYHLAEATVARSSDLGVNDTTYFARTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+PGD +GY L N N+ ++ + G +P+ IL+KK Y KR ++K R+W
Sbjct: 371 ILHPGDTVMGYHLTGTNFNNANFEEIEASHTYGSTIPDVILVKKHYPRKR---KNKKRNW 427
Query: 421 KLKSLDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMA 476
+LK LD E +D SK +++ ++ ++E FLRD+EE+ ELR ++LY+ K Q P +
Sbjct: 428 RLKRLDREEEDERPSKKQSNNNRLEDDFEMFLRDVEEDAELRSTLALYKAKHNQKPKNVE 487
Query: 477 S----------VTDGEDVPSVPLDELLADLD 497
+ + ++VP + +DELL D +
Sbjct: 488 ADAMEMVEEEEEEEDDEVPQINVDELLEDFE 518
>gi|366992630|ref|XP_003676080.1| hypothetical protein NCAS_0D01360 [Naumovozyma castellii CBS 4309]
gi|342301946|emb|CCC69717.1| hypothetical protein NCAS_0D01360 [Naumovozyma castellii CBS 4309]
Length = 521
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/513 (42%), Positives = 317/513 (61%), Gaps = 25/513 (4%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG P+ MC C++ VDITEG+ + IS C C+ +LQPP WI+
Sbjct: 16 VSTVLCCNCGTPIDGSTGLVMCYDCIKMTVDITEGIPREANISFCRNCERFLQPPGQWIR 75
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI++KL VQ E + I++Q++
Sbjct: 76 ADLESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMANTIIQQTFE 135
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C++ W AAVQ+RQ V H+RTF YLEQLILKH+A I I++
Sbjct: 136 VEYVVIAMQCPDCAK-SYTTHTWRAAVQIRQKVPHKRTFLYLEQLILKHNAHVDTISISE 194
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + + YK+++SVEI PIC
Sbjct: 195 AKDGLDFFYSQKNHAVKMIDFLNSVVPMKYKKSEELISQDTHTGSATYKFSYSVEIVPIC 254
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A LGN+ V+C K++N++ LDP TL+ L A YWRS F +L
Sbjct: 255 RDDLVVLPKKLAKHLGNISQFVLCSKISNTVQFLDPNTLQTADLSAQVYWRSPFNALADV 314
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QL E+IVLDVE + K VLAD +AR +D G ND ++ R+HLG +L+ GD
Sbjct: 315 SQLTEFIVLDVE----STGISKGKRVLADVTIARSADLGINDQVYYTRSHLGAILHAGDT 370
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL---DMEV 429
+GY + ++N N D +P+ +L+KK Y+ RK K R+WKLK + E+
Sbjct: 371 VMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQ----RKTRKNRNWKLKRMAREHKEI 426
Query: 430 DDSKG------RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK----DYQPSEMASVT 479
D ++ + D E+ ++YE FL++LEE+ E+R I+LY+N QP E+
Sbjct: 427 DAAQDYSSRVQKQDMERAERDYELFLQELEEDDEMRQTINLYKNNAPAPAPQPHEIEEDE 486
Query: 480 DGEDVPSVPLDELLADLD-LKSDDGEGDDSMRE 511
D D P + +DELL +LD + DDG D +E
Sbjct: 487 D-PDAPQIDIDELLDELDEMTLDDGTDDPQQQE 518
>gi|340960081|gb|EGS21262.1| putative nonsense-mediated mRNA decay protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 824
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/516 (41%), Positives = 316/516 (61%), Gaps = 27/516 (5%)
Query: 5 AGMFTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDC 62
A M +T ++LCC CG+P+ +A +C C++S VDI++G+Q+ + C +C+
Sbjct: 316 APMMGTARTGATILCCNCGVPIDGTSSAGALCYDCIKSTVDISQGIQREGTLHFCRDCER 375
Query: 63 YLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVL 122
+L PP TW+ A ES+ELL+ C+KRL+NL RVR+++A F+WTEPHS+RIKVK+ +Q +V
Sbjct: 376 WLMPPSTWVAAAPESRELLSLCLKRLRNLGRVRIIDARFVWTEPHSRRIKVKITIQDQVS 435
Query: 123 NGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHD 182
+G +++QS+ V YV C C++ + W A VQ+RQ VTH+RTF LEQLILKH
Sbjct: 436 DGVLMQQSFEVVYVVAYQQCRECAK-SYTANVWRAVVQVRQKVTHKRTFLLLEQLILKHQ 494
Query: 183 AAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKY 242
A I I + G+DFFF R+ A FV F+ V P+ + + L+S D + + YK+
Sbjct: 495 AHKDTINIKEEKDGVDFFFAQRNQAEAFVHFLKSVVPITLKDSRHLISQDTHTGDKQYKF 554
Query: 243 TFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW 302
T+S EI PICR+DL+ LP K+A +GN+ PL +C ++ ++ LLDP TL L +D YW
Sbjct: 555 TYSAEIIPICRDDLVALPLKLAKQIGNIPPLCLCYRIGTAVYLLDPNTLHTAELSSDVYW 614
Query: 303 RSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTH 362
R F+ L + +VE+IV+D+E + K+VLA+ VAR SD G ND ++ RTH
Sbjct: 615 RQPFRPLADATSMVEFIVMDIEA----TGIRKGKWVLAEVTVARASDLGVNDNVYFTRTH 670
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKP 417
LGHLL+PGD +GY L N N D + G +P+ +L+KK Y +R +R
Sbjct: 671 LGHLLHPGDSVMGYMLTGTNFNSDTFDAIENSRQYGSTIPDVVLVKKHYPNRRRNRRR-- 728
Query: 418 RSWKLKSLDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRN--------K 468
+WKLK L + + + TDQ +M+ EYE FLRD+EE+ ELR ++LY+N +
Sbjct: 729 -NWKLKRLPKDEGELLPKATDQARMDDEYEAFLRDVEEDEELRATLALYKNTRKTKKPQQ 787
Query: 469 DYQPSEMASVTDGEDVPSVPLDELL---ADLDLKSD 501
D +A D +D P + +DELL DLD++ D
Sbjct: 788 DADAMSIAETEDDDDGPKISMDELLDDFEDLDIQDD 823
>gi|68488743|ref|XP_711797.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|68488780|ref|XP_711779.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|46433103|gb|EAK92557.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|46433122|gb|EAK92575.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|238880086|gb|EEQ43724.1| nonsense-mediated mRNA decay protein 3 [Candida albicans WO-1]
Length = 520
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/498 (44%), Positives = 320/498 (64%), Gaps = 19/498 (3%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG+PM + MC C++ VDITEG+ + +S C C+ +LQPP WI+
Sbjct: 18 VATVLCCNCGVPMDGSSGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWIR 77
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI++K+ VQ E + I++Q++
Sbjct: 78 AELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRIKITVQGEAMANTIVQQTFE 137
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH+A + I +
Sbjct: 138 VEYVVIAMQCPDCAKSYTT-NTWRATVQIRQKVPHKRTFLYLEQLILKHNAHVDTVSIQE 196
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HA K V+F+ VAP++ + ++LVS D S + +YK+++SVEI+PIC
Sbjct: 197 TKDGLDFFYAQKNHAAKMVDFLQAVAPIKVKKSEELVSMDIHSGSSSYKFSYSVEIAPIC 256
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A S+GN+ LV+C K+TN+I +DP TL+ L A +WRS F SLL +
Sbjct: 257 RDDLVVLPKKLAHSMGNISRLVLCNKITNAIQFMDPNTLQTADLSAPVFWRSPFPSLLDA 316
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
Q+VE+IVLD+E ++ G KYVLAD +V+R SD G ND F +RTHLG +L+PGD
Sbjct: 317 TQMVEFIVLDIEPTG---DIRG-KYVLADIEVSRASDLGSNDQTFYVRTHLGGILHPGDS 372
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD----ME 428
LGY L + N N D PE +++KK Y K + +++ K + + +
Sbjct: 373 CLGYYLTNTNINSELWDTLDTDNTPEVVIVKKHYARKSKKSKNRKWKLKRMAREHNDIVA 432
Query: 429 VDDSK-GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS--------EMASVT 479
DDS+ R +QE+ ++YE FL++LEE+ ELR I+LY+ + QP
Sbjct: 433 NDDSRQARQEQERAERDYELFLQELEEDDELRQTINLYKAGENQPQVSRNHDDMNDEDED 492
Query: 480 DGEDVPSVPLDELLADLD 497
D ED P + +DELL +LD
Sbjct: 493 DDEDAPEIGIDELLDELD 510
>gi|302663502|ref|XP_003023393.1| hypothetical protein TRV_02495 [Trichophyton verrucosum HKI 0517]
gi|291187387|gb|EFE42775.1| hypothetical protein TRV_02495 [Trichophyton verrucosum HKI 0517]
Length = 525
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/512 (42%), Positives = 321/512 (62%), Gaps = 30/512 (5%)
Query: 8 FTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ A +C C++ +DI+EG+Q+ + C +C+ +LQ
Sbjct: 16 FHPQQQAATILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A LES+ELL C+++L+ L +VR+++A FIWTEPHSKR+KVK+ +Q+E G
Sbjct: 76 PPAQWISAALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q++ VEYV C C++ + W A+VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 136 ILQQAFEVEYVVASQQCPECAK-SYTVNTWRASVQVRQKVPHKRTFLYLEQLILKHGAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I ++ G+DF+F R+HA K V+F+ VAP+R R +QL+S D +++ +YK TFS
Sbjct: 195 DTINIKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVRKSQQLISMDVHTSSKSYKITFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
E+ PIC++DL+ LP K+A SLGN+ PL +C +V SI +LDP TL+ + + YWRS
Sbjct: 255 AELIPICKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPSAIYWRSP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
F +L ++LVEY+V+D+E + +Y LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FANLADIQELVEYVVMDIEAIGQ----SSGRYHLAEATVARSSDLGVNDTTYFARTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+PGD +GY L N N+ ++ + G +P+ IL+KK Y KR ++K R+W
Sbjct: 371 ILHPGDTVMGYHLTGTNFNNANFEEIEASHTYGSTIPDVILVKKHYPRKR---KNKKRNW 427
Query: 421 KLKSLDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMA 476
+LK LD E +D SK + + ++ ++E F RD+EE+ ELR ++LY+ K Q P +
Sbjct: 428 RLKRLDREEEDERPSKKQNNNNRLEDDFEMFSRDVEEDAELRSTLALYKAKHNQKPKNVE 487
Query: 477 S-----------VTDGEDVPSVPLDELLADLD 497
+ D ++VP + +DELL D +
Sbjct: 488 ADAMEMVEEEEEEEDDDEVPEINVDELLEDFE 519
>gi|312371222|gb|EFR19462.1| hypothetical protein AND_22389 [Anopheles darlingi]
Length = 502
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/503 (43%), Positives = 320/503 (63%), Gaps = 26/503 (5%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
TV +LCC+CG+P+ PNA NMCV CLRS VDITE + K +I C C+ YL PP W++
Sbjct: 19 TVNKILCCECGVPIEPNATNMCVPCLRSHVDITENIPKQAVIFFCRNCERYLNPPNEWVQ 78
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
LESKELL+ C+KRL L +V+LV+A F+WTEPHSKRIKVKL V EV+N +L+Q +V
Sbjct: 79 CGLESKELLSLCLKRLSGLKQVKLVDAGFVWTEPHSKRIKVKLTVHGEVMNDVVLQQVFV 138
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VE+ + MCD C R +A D W VQ+RQ +R+T FYLEQ+ILKH A + I
Sbjct: 139 VEFTVNNQMCDDCHRTEAK-DFWRCMVQVRQKAVNRKTLFYLEQMILKHRAHENTLGIKP 197
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ +H+ K V+F+ V + K+L+SHD SN++NYKY+++V+I P+
Sbjct: 198 TAGGLDFFYATDAHSRKMVDFLQAVT-----NSKKLISHDIHSNSYNYKYSYAVDIVPVS 252
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
+ L+CL ++A +G++ P+ + KV NSI L+DP T + + +W++ F+++
Sbjct: 253 KGSLVCLSKRLAQQMGHIAPVCLVTKVANSIHLIDPQTAQLAEVQNMAFWKNPFEAICNP 312
Query: 313 RQLVEYIVLDVEVVSSEVNVGGS----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
+Q++E+IV+DVE + G ++ LAD V + S+ G +D+ +R+HLG+LL
Sbjct: 313 KQMIEFIVMDVEFRDQKAFPGQGPVSMRHTLADVWVVKASELGLDDSTVHVRSHLGNLLK 372
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LGYDL AN N+ + +K +P +L+KKSY +K +RK++ R+WKLK L
Sbjct: 373 PGDTVLGYDLRDANVNNGDFEKLSADTIPNVLLVKKSY-DKTVRKQN--RNWKLKHL--- 426
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
+D TD E +Y EFL DLEE+PELR N++++ KD + +M T+ D PSVP
Sbjct: 427 AEDVALDTDIE---NDYNEFLEDLEEDPELRQNVNIF--KDSKRQQMPVDTNDMDDPSVP 481
Query: 489 ---LDELLADLDLKSDDGEGDDS 508
L+E+L DL L DD E D
Sbjct: 482 RITLEEMLDDLVL--DDAEMGDG 502
>gi|344230456|gb|EGV62341.1| hypothetical protein CANTEDRAFT_126135 [Candida tenuis ATCC 10573]
Length = 516
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/477 (45%), Positives = 303/477 (63%), Gaps = 15/477 (3%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPE 59
M+ + T Q V +VLCC CG+PM MC C++ VDITEG+ + IS C
Sbjct: 1 MSNYTQLDTTTQGVATVLCCNCGVPMDGSTGMVMCYDCIKLTVDITEGIPREANISFCRN 60
Query: 60 CDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQK 119
C+ +LQPP WI+A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI++K+ VQ
Sbjct: 61 CERFLQPPGQWIRAELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRIKITVQG 120
Query: 120 EVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLIL 179
E +N I++QS+ V YV C C++ P+ W A VQ+RQ V H+RTF YLEQLIL
Sbjct: 121 EAMNNTIVQQSFEVVYVVVAMQCADCAKTYT-PNTWRATVQIRQKVPHKRTFLYLEQLIL 179
Query: 180 KHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFN 239
+H+A + I + G+DFF+ ++HAVK ++F+ V P++ + ++LVS D +S +
Sbjct: 180 RHNAHQDTVSIQESSDGLDFFYSQKNHAVKMLDFLTAVVPLKYKKSEELVSQDIQSGSST 239
Query: 240 YKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
YK+ +SVEI PICR+DL+ LP K+A GN+ +V+C K++N I LDPFTL+ L
Sbjct: 240 YKFAYSVEIVPICRDDLVVLPKKLAHHSGNISRVVLCSKISNMIQFLDPFTLQMTDLQPS 299
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
YWR+ F SL++ +VE+IVLDVE K+VLAD V+R SD G ND + I
Sbjct: 300 IYWRNPFSSLISVTNMVEFIVLDVEPTGE----TRGKHVLADITVSRESDLGVNDQSYYI 355
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
R+HLG +L+PGD LGY L ++N N D PE +L+KK Y K K+SK R+
Sbjct: 356 RSHLGAILHPGDSCLGYFLTNSNFNSDLWDSLDESNTPEVVLVKKFYPRK--SKKSKNRN 413
Query: 420 WKLKSLDMEVDDSKGRTD-------QEKMNKEYEEFLRDLEENPELRFNISLYRNKD 469
WKLK + E D G D QE+ ++YE FL++LEE+ E+R I+LY++ +
Sbjct: 414 WKLKRMAREHQDIGGAEDSRQAKQEQERAERDYELFLQELEEDEEMRQAINLYKSTN 470
>gi|384497741|gb|EIE88232.1| hypothetical protein RO3G_12943 [Rhizopus delemar RA 99-880]
Length = 481
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/476 (47%), Positives = 321/476 (67%), Gaps = 15/476 (3%)
Query: 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLN 92
MCV C+R+EVDITEG+ KH + C C+ YLQPP W+ AQLES+ELLT C+K+LK LN
Sbjct: 1 MCVNCIRNEVDITEGIPKHATLHFCRNCERYLQPPGIWVAAQLESRELLTLCLKKLKGLN 60
Query: 93 RVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANP 152
+VRLV+A FIWTEPHSKR+KVKL +QKEV IL+Q + VEYV C+ C+R+ A
Sbjct: 61 KVRLVDAGFIWTEPHSKRVKVKLTIQKEVFANTILQQIFEVEYVVSSQQCEECTRLAAQ- 119
Query: 153 DQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVE 212
+ W A VQ+RQ V H+RTF +LEQLILKH+A I + GIDF++G+R+ A+K VE
Sbjct: 120 NTWKAVVQVRQKVEHKRTFLFLEQLILKHNAHKDTTNIKEAKDGIDFYYGSRNQAIKMVE 179
Query: 213 FVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGP 272
F+ V P+R + +QL+S D ++ NYK+T+S EI PICR+DL+C+P K+A + GN+
Sbjct: 180 FLNAVVPMRYKTSEQLISKDIHTSVSNYKFTYSAEIVPICRDDLVCIPKKLANNFGNISR 239
Query: 273 LVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNV 332
L+IC +++NSI L+D TL + QY+R F SL +++ ++E+ VLDVE + V
Sbjct: 240 LLICTRISNSIHLMDVNTLATADVSTTQYYRQPFLSLGSAKSMIEFYVLDVEPLGP---V 296
Query: 333 GGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK 392
G K VL D VAR+SDFG+ND F R+HLG LNPGD +GYDL AN N+ E D+
Sbjct: 297 DGKK-VLCDVHVARMSDFGRNDEQFIARSHLGAFLNPGDTVMGYDLTRANFNNGEFDQLN 355
Query: 393 GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGR-TDQEKMNKEYEEFLRD 451
LP+ +L++KSY RK+SK R+WKL+ L EVD+ R DQ ++ + E F+RD
Sbjct: 356 QSELPDVVLVRKSYP---ARKKSKQRNWKLQQLSKEVDEMLPRKQDQARIENDMELFMRD 412
Query: 452 LEENPELRFNISLYRN-----KDYQPSEMASVTDGEDVPSVPLDELLADLDLKSDD 502
+EE+PE R NI+++++ Q E+ ++D E++P + L+E+L ++ + D+
Sbjct: 413 IEEDPEFRANINIFKSQQNNAAVQQQEEVQDMSD-EELPEISLEEMLDEMAIHMDE 467
>gi|348581748|ref|XP_003476639.1| PREDICTED: 60S ribosomal export protein NMD3-like [Cavia porcellus]
Length = 465
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/431 (48%), Positives = 293/431 (67%), Gaps = 16/431 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CGIP++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGIPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGVHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN FNYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTFNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWNHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V ++ V K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDLKRNAGAGVISKKHTLGEIWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL--- 425
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDKVPDVVLIKKSYDRT---KRQRRRNWKLKELARD 427
Query: 426 --DMEVDDSKG 434
+M+ DD +
Sbjct: 428 KENMDTDDERS 438
>gi|213972521|ref|NP_001135423.1| nonsense-mediated mRNA 3 [Nasonia vitripennis]
Length = 506
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/495 (43%), Positives = 304/495 (61%), Gaps = 17/495 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
+LCC+C P+ PN NMCV C+R+ VDITEG+ K ++ C C+ YL PP WIKA
Sbjct: 16 AQILCCECATPIEPNPTNMCVGCVRTRVDITEGIPKSAVLYFCRNCERYLHPPGEWIKAT 75
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LES+ELL C+++LK LNRV+L++A F+WTEPHSKRIKVKL VQ EV+ AIL+Q ++VE
Sbjct: 76 LESRELLALCMRKLKGLNRVKLIDAGFLWTEPHSKRIKVKLTVQGEVMADAILQQVFIVE 135
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
Y + MCD C R +A D W A+VQ+RQ +++TF+YLEQLILKH A + I +
Sbjct: 136 YTINNQMCDDCHRTEAK-DYWNASVQVRQKAINKKTFYYLEQLILKHRAHENTVAIKPIH 194
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
+G+DFF+ S A K +F+ V P + +H K+L+SHD SN +NYK+TFS+EI P+ ++
Sbjct: 195 EGLDFFYSTESGARKMTDFINSVLPCKYQHSKKLISHDIHSNVYNYKFTFSIEIVPVSKD 254
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
++CLP K+ G L P+ + KVT+SI L+D + + + ++ YW+ F S+ +Q
Sbjct: 255 SIVCLPRKLTQKCGGLNPISLVYKVTSSIHLIDVSSGQVAEISSNLYWQLPFNSVCNPKQ 314
Query: 315 LVEYIVLDVEVVSSEVNVG-------GSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
L EY+V+D+E + + K+ +AD V R D G + RTHLG +L
Sbjct: 315 LKEYVVIDIEPIKEKDKKKFPGQGHISHKFAIADVWVVRAEDLGLDQNTIHTRTHLGGIL 374
Query: 368 NPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
PGD ALGY L N ND +K +P+ ILIKK Y + +R + R WKLK +
Sbjct: 375 KPGDSALGYALRENNINDDNFEKLDENQVPDVILIKKFYGHDKAARR-RARMWKLKHIAE 433
Query: 428 EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSV 487
V D N EY EFL DLEE+PELR N++++R+K Q D +P +
Sbjct: 434 NV-------DMNSENNEYNEFLDDLEEDPELRSNVNIFRDKSKQIPVDTDCIDPT-MPQI 485
Query: 488 PLDELLADLDLKSDD 502
L+E+L DL ++ ++
Sbjct: 486 TLEEMLDDLVIEDEE 500
>gi|302497129|ref|XP_003010565.1| hypothetical protein ARB_03266 [Arthroderma benhamiae CBS 112371]
gi|291174108|gb|EFE29925.1| hypothetical protein ARB_03266 [Arthroderma benhamiae CBS 112371]
Length = 544
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/502 (42%), Positives = 320/502 (63%), Gaps = 29/502 (5%)
Query: 17 VLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
+LCC CG P+ A +C C++ +DI+EG+Q+ + C +C+ +LQPP WI A
Sbjct: 45 ILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQPPAQWISAA 104
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LES+ELL C+++L+ L +VR+++A FIWTEPHSKR+KVK+ +Q+E G IL+Q++ VE
Sbjct: 105 LESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGTILQQAFEVE 164
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
YV C C++ + W A+VQ+RQ V H+RTF YLEQLILKH A I I ++
Sbjct: 165 YVVASQQCPECAK-SYTVNTWRASVQVRQKVPHKRTFLYLEQLILKHGAHKDTINIKEVK 223
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DF+F R+HA K V+F+ VAP+R + +QL+S D +++ +YK TFS E+ PIC++
Sbjct: 224 DGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFSAELIPICKD 283
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
DL+ LP K+A SLGN+ PL +C +V SI +LDP TL+ + + YWRS F +L ++
Sbjct: 284 DLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPSAIYWRSPFANLADIQE 343
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYAL 374
LVEY+V+D+E + +Y LA+A VAR SD G NDT + RTHLG +L+PGD +
Sbjct: 344 LVEYVVMDIEAIGQ----SSGRYHLAEATVARSSDLGVNDTTYFARTHLGGILHPGDTVM 399
Query: 375 GYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GY L N N+ ++ + G +P+ IL+KK Y KR ++K R+W+LK LD E
Sbjct: 400 GYHLTGTNFNNANFEEIEASHTYGSTIPDVILVKKHYPRKR---KNKKRNWRLKRLDREE 456
Query: 430 DD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMAS-------- 477
+D SK +++ ++ ++E FLRD+EE+ ELR ++LY+ K Q P + +
Sbjct: 457 EDERPSKKQSNNNRLEDDFEMFLRDVEEDAELRSTLALYKAKHNQKPKNVEADAMEMVEE 516
Query: 478 --VTDGEDVPSVPLDELLADLD 497
+ ++VP + +DELL D +
Sbjct: 517 EEEEEDDEVPEINVDELLEDFE 538
>gi|4753704|emb|CAB42049.1| Nmd3 protein [Drosophila melanogaster]
Length = 521
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/496 (43%), Positives = 312/496 (62%), Gaps = 21/496 (4%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+ + PN ANMCV CLR+ VDITE + K ++ C C+ YLQPP WI+A LE
Sbjct: 25 ILCCECGVAIQPNPANMCVTCLRNHVDITENVPKQAVLHFCRNCERYLQPPNEWIQAALE 84
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E++ G +L+Q +VVE+
Sbjct: 85 SRELLAICLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEIIGGTMLQQVFVVEFT 144
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q+ MC+ C R +A D W VQ+RQ +++TF+YLEQLILKH A + I G
Sbjct: 145 VQNQMCNDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEHGG 203
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ N +HA + V+F+ + P + K+L+SHD SNN+NYKY +SVEI+P+ ++
Sbjct: 204 LDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIAPVSKDSA 263
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K+ LGNL PLV+ +V++SI L+DP T + L + Y+R+ F+++ +QLV
Sbjct: 264 VCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAVCNPKQLV 323
Query: 317 EYIVLDVEVV---SSEVNVGGS----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+V+D++V+ + G K+ L D V R S+ G ND R+HLGHLL
Sbjct: 324 EYVVMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNPIHTRSHLGHLLKV 383
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD +GY+ ++ ND+E DK +P+ IL++K Y+ + R R WK+K L E
Sbjct: 384 GDSVMGYNTARSHINDLEFDKLSSDEIPDVILVRKHYDRQ---TRLSQRVWKIKHLAAEA 440
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMASVTDGEDVPSVP 488
D + + D Y EFL DLEEN ++R +++YR+ + P E+ + G DVP +
Sbjct: 441 TDERSKYD-------YHEFLDDLEENEDIRGQVNIYRDTNKTIPIEVQAA--GGDVPQIT 491
Query: 489 LDELLADLDLKSDDGE 504
L+E+L D+ L+ D E
Sbjct: 492 LEEMLEDMTLECADDE 507
>gi|358053876|dbj|GAB00009.1| hypothetical protein E5Q_06711 [Mixia osmundae IAM 14324]
Length = 534
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/503 (42%), Positives = 310/503 (61%), Gaps = 24/503 (4%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
M + P VLC CG + PN + +CV CLR+ VDIT+ + K I++C C
Sbjct: 1 MELETAYIAPPTQAAYVLCADCGTAIEPNNSGLCVNCLRNTVDITDAIPKQANINYCRNC 60
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
+ YL PP+TW+ A+LES+ELL C+++L+ L VRL++A FIWTE HSKR++VKL VQKE
Sbjct: 61 ERYLSPPQTWVIAELESRELLAICLRKLRGLKTVRLIDAGFIWTESHSKRLRVKLTVQKE 120
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
VL +L+Q + VEY+ Q C C+++ A W A VQ RQ V H++TF +LEQLILK
Sbjct: 121 VLASTVLQQIFEVEYIVQYGQCPDCTQLAAK-QHWKAVVQARQKVDHKKTFLFLEQLILK 179
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
H A + + ++ G+DFF+ ++ A K VEF+ VAPV+ + +QL+S D +++ NY
Sbjct: 180 HGADKDTVSVKEVRDGLDFFYASKQAAAKMVEFLQAVAPVKMKQSEQLISQDTQNSTSNY 239
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ 300
K TFSVEI PIC++DL+CLP KVA SL N+G +V+C +V NSI L+DP TL + A
Sbjct: 240 KTTFSVEILPICKDDLVCLPLKVARSLSNIGQIVVCTRVGNSIHLIDPVTLHTADITAPV 299
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGG-SKYVLADAQVARVSDFGKNDTIFSI 359
Y+R+ F L VE++VLD+E V G +++LADAQV +S ++DTI+
Sbjct: 300 YFRAPFPPLAPLSGAVEFVVLDIEPTQHPPKVAGKGRFMLADAQVTPISGTMESDTIYHT 359
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
RTHLG +L GD +GY L+SAN N+ D K +PE IL++K+Y + K+SK R
Sbjct: 360 RTHLGAVLKAGDTVMGYQLHSANFNNTAWDSLKTDRIPEVILVRKTYPNR--AKKSKGRK 417
Query: 420 WKLKSLDMEVDDS---------------KGRTDQEKMNKEYEEFLRDLEENPELRFNISL 464
W+L+S+ E + G +Q + +YE FLRD+EE+ E+R ++L
Sbjct: 418 WRLRSMAKEAGEDGIGLGRERAVKAGRMPGHAEQARAEADYEAFLRDIEEDEEMRQGVNL 477
Query: 465 YRNKDYQPSEMASVTDGEDVPSV 487
Y+ +P A+V D DV SV
Sbjct: 478 YK----KPKPQAAV-DTMDVESV 495
>gi|406868628|gb|EKD21665.1| nonsense-mediated mRNA decay protein 3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 535
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/508 (41%), Positives = 328/508 (64%), Gaps = 22/508 (4%)
Query: 12 QTVGSVLCCKCG--IPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG I +A +C C++ VD+++G+Q+ + C +CD +L PP +
Sbjct: 23 QNSATILCCNCGAAIDGTTSAGALCYDCVKLTVDVSQGIQREATLHFCRDCDRWLLPPSS 82
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A ES+ELL C+K+L+ L++VR+++A FIWTEPHS+R+KVKL +Q V G +L+Q
Sbjct: 83 WIVAAPESRELLALCLKKLRGLHKVRIIDASFIWTEPHSRRVKVKLTIQDSVSEGVVLQQ 142
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH A I
Sbjct: 143 SFEVEYVVAYQQCPDCAK-SYTANTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDTIN 201
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I ++ G+DFF+ R+ A KFV+F+ V PVRS+ ++L+S D ++ +YK+++SVE+
Sbjct: 202 IKEVKDGLDFFYAARNQAEKFVDFLTSVVPVRSKKSQELISMDIHTSTSSYKFSYSVEVV 261
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ +P K+A S+GN+ PL IC ++ ++ LDP TL+ + A YWR+ F SL
Sbjct: 262 PICKDDLVAIPIKLARSIGNILPLGICHRIGTTVNFLDPSTLQTADVSAPIYWRAPFTSL 321
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++LVE+IV+D+E++ + ++ LA+A VAR SD G+ND + RTHLG++L+P
Sbjct: 322 ADVQELVEFIVMDIELLGPQ----KGRWALAEATVARASDLGRNDKTYYTRTHLGNVLHP 377
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD +GY L N N + D + +P+ +L+KK Y K K+SK R+W+LK
Sbjct: 378 GDSVMGYQLTGTNFNSPQFDALEESNTYSSQIPDVMLVKKFYARK---KKSKNRNWRLKR 434
Query: 425 LDMEVDDS-KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASV---TD 480
++ E + + DQ++M+K+YE FLRD+EE+ ELR ++L++ + + +E SV +D
Sbjct: 435 MNKEEGEVLPKKADQDRMDKDYEMFLRDVEEDEELRQTMALFKAQQKRDAEAMSVVETSD 494
Query: 481 GE--DVPSVPLDELLADL-DLKSDDGEG 505
GE + P + +DELL + DL+ D +G
Sbjct: 495 GEEDETPKINMDELLDEFEDLQVADKKG 522
>gi|212530812|ref|XP_002145563.1| 60S ribosomal export protein NMD3 [Talaromyces marneffei ATCC
18224]
gi|210074961|gb|EEA29048.1| nonsense-mediated mRNA decay protein 3 [Talaromyces marneffei ATCC
18224]
Length = 522
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/512 (41%), Positives = 319/512 (62%), Gaps = 27/512 (5%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI++ +Q+ + C +C+ +LQPP T
Sbjct: 19 QPEATILCCNCGAPIDGTASAGALCHDCIKLTVDISQDIQRESALHFCRDCERWLQPPNT 78
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W+ A LES+ELL C+++L+ L+RVR+++A FIWTEPHS+RIKVK+ +Q+E G IL+Q
Sbjct: 79 WVSAALESRELLALCLRKLRGLSRVRIIDASFIWTEPHSRRIKVKITIQQEAFQGTILQQ 138
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
++ VEYV C C++ + W A VQ+RQ V H+R+F YLEQL+LKH+A I
Sbjct: 139 TFEVEYVVSTQQCPDCAKSFTH-HSWRACVQIRQKVPHKRSFLYLEQLMLKHNAHRDTIN 197
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + G+DFFF R+HA K V+F+ V PVR + ++L+S D ++ YK T+SVE+
Sbjct: 198 IKEAKDGLDFFFSQRNHAEKMVDFLQSVTPVRVKKSQELISMDIHTSVRQYKITYSVELI 257
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP K+A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L
Sbjct: 258 PICKDDLVALPIKLARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNL 317
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+QLVE++V+D+E V ++ LA+ VAR S+ G ND + RTHLG +L+
Sbjct: 318 ADVQQLVEFVVMDIEPVGE----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGGVLHV 373
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD LGY L N ND D + G +P+ +L++K Y K K+ K R+WKLK
Sbjct: 374 GDSVLGYHLTGTNFNDPNFDAIQESSQYGSTIPDVMLVRKFYARK---KKPKSRNWKLKR 430
Query: 425 LDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD-----------YQPS 473
++ E ++ + D +++ ++E FLRD+EE+ ELR +SLY+ K+ +
Sbjct: 431 MNYEEEEPSRKQDSDRLEADFEMFLRDIEEDQELRSTLSLYKAKNESRRPEKMDVVEEQD 490
Query: 474 EMASVTDGEDVPSVPLDELLADLD-LKSDDGE 504
EMA + ++ P + ++ELL + D L DD E
Sbjct: 491 EMADDSSEDEAPKINMEELLDEFDELNMDDAE 522
>gi|195456708|ref|XP_002075252.1| GK17003 [Drosophila willistoni]
gi|194171337|gb|EDW86238.1| GK17003 [Drosophila willistoni]
Length = 511
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/502 (42%), Positives = 309/502 (61%), Gaps = 23/502 (4%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
VLCC+CG+ + PN ANMCV CLR+ VDITE + K ++ C C+ YLQPP WI+A LE
Sbjct: 21 VLCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPTEWIQASLE 80
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V ++ G +L+Q +VVE+
Sbjct: 81 SRELLAICLKKLKGLKDVKLVDAGFIWTEQHSKRIKVKLTVHGQISGGTVLQQVFVVEFT 140
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q+ MC+ C R +A D W VQ+RQ +++TF+YLEQLILKH A + I G
Sbjct: 141 VQNQMCNDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEHGG 199
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ N +HA + V+F+ + P R K+L+SHD SNN+NYKY++SVEI+PI ++
Sbjct: 200 LDFYYANENHARRMVDFLQTMVPARVTTSKRLISHDIHSNNYNYKYSWSVEIAPISKDSA 259
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K+ LGNL PL + +V++SI L+DP T + + + Y+RS+F+++ +QLV
Sbjct: 260 VCLTKKLRHQLGNLSPLCLVNRVSSSIHLIDPLTAQIAEITSQVYFRSAFEAICNPKQLV 319
Query: 317 EYIVLDVEVV-----SSEVNVG--GSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EYIV+D++V+ S G K+ L D V R S+ G + R+HLGHLL
Sbjct: 320 EYIVMDIDVIMDKDRKSYPGQGQVSFKHALCDIWVVRASELGLTENTIHTRSHLGHLLKV 379
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD +GY+ AN ND E +K ++P+ IL++K Y+ + R R WK+K L E
Sbjct: 380 GDSVMGYNTGEANINDPEFEKLSSDIIPDVILVRKHYDRQ---SRLSQRVWKIKHLAAEA 436
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPL 489
D + + D Y EFL DLEE+ +LR +++YR+ + E +D+P + L
Sbjct: 437 TDERSKYD-------YNEFLDDLEEHEDLRGQVNIYRDSNKTAPEAT-----DDLPQINL 484
Query: 490 DELLADLDLKSDDGEGDDSMRE 511
E+L DL L+ D E D E
Sbjct: 485 AEMLEDLTLECADDEMGDGQEE 506
>gi|302895403|ref|XP_003046582.1| 60S ribosomal export protein NMD3 [Nectria haematococca mpVI
77-13-4]
gi|256727509|gb|EEU40869.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 518
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/497 (42%), Positives = 316/497 (63%), Gaps = 19/497 (3%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI++G+Q+ ++ C +CD +L PP +
Sbjct: 19 QGAATILCCNCGAPIDGTTSAGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLMPPTS 78
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A ES+ELL C+K+L+ LN+VR+V+A F+WTEPHS+RIKVKL +Q V +G +L+Q
Sbjct: 79 WIVASPESRELLALCLKKLRGLNKVRIVDASFVWTEPHSRRIKVKLTIQDAVQDGMLLQQ 138
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ V YV C C++ + W AAVQ+RQ V H+RTF +LEQLI+KH A +
Sbjct: 139 SFEVMYVVAYQQCPECAK-SYTANVWRAAVQVRQKVLHKRTFLFLEQLIMKHGAHRDTLN 197
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + GIDFFF ++ A KF++F+ V PV+ + ++L+SHD ++ +YK+T+S E+
Sbjct: 198 IKEAKDGIDFFFSQKNQAEKFIDFLNSVVPVKVKASQELISHDVHTSKTSYKFTYSAELV 257
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ +P K+A GN+ PL++C ++ S+ LLDP TL+ C + A YWR+ F SL
Sbjct: 258 PICKDDLVAMPIKMAKQNGNVSPLLLCHRIGTSVYLLDPQTLQTCDISAPIYWRAPFLSL 317
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ +LVE+IV+D+E N K+ LA+A VAR SD G ND + RTHLG L P
Sbjct: 318 TDTHELVEFIVMDIE----PTNTQKGKWTLAEATVARASDLGHNDRTYFTRTHLGRFLQP 373
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD A+GY L N+ E + + G +P+ +L+KK Y +R + +WKLK
Sbjct: 374 GDSAMGYLLSGTVFNNTEYEAIEASNQYGSTIPDVVLVKKHYPRRRKNRNR---NWKLKR 430
Query: 425 LDM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEM--ASVTDG 481
++ E + + DQ++M++EYE+FLRD+EE+ ELR ++LY+ K EM A +G
Sbjct: 431 MNKDEGELLPKKADQDRMDREYEQFLRDVEEDEELRATLALYKAKKKAEEEMSIAETEEG 490
Query: 482 ED-VPSVPLDELLADLD 497
+D P V +DELL D D
Sbjct: 491 DDEAPHVDMDELLDDFD 507
>gi|115908403|ref|XP_788633.2| PREDICTED: 60S ribosomal export protein NMD3 [Strongylocentrotus
purpuratus]
Length = 513
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/496 (44%), Positives = 322/496 (64%), Gaps = 20/496 (4%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T G +LCC+CG P+ PN ANMCVACLR++VDITEG+ K + C C+ YLQPP WI
Sbjct: 10 TQGMILCCQCGTPIQPNPANMCVACLRTQVDITEGIPKQAAVYFCKACERYLQPPAQWIT 69
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
LES+ELL C+K+LK L +VRL++A F+WTEPHSKR+KVKL +QKEV +G +L+Q ++
Sbjct: 70 CTLESRELLALCLKKLKGLAKVRLIDAGFVWTEPHSKRLKVKLTIQKEVQSGTVLQQVFI 129
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
V++V Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILKH+ + + Q
Sbjct: 130 VDFVVQGQMCTDCHRVEAK-DYWRAVVQVRQKTAHKKTFYYLEQLILKHNLHVNCLNVKQ 188
Query: 193 MDQGIDFFFGNRSH---AVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
D+GIDF++ ++ A K V+F+ V P + + +QL+SHD +N ++YKYT+SVEI
Sbjct: 189 HDEGIDFYYASKDQSNGARKMVDFLMSVVPCKYKLSQQLISHDIHNNTYSYKYTYSVEIV 248
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC+++++CLP K+A SLGN+G + +C++V +++ L+DP TL+ L+A +WR+ F SL
Sbjct: 249 PICKDNVVCLPKKLAASLGNIGQICVCIRVCSTVQLIDPNTLQIVELNATTFWRNPFSSL 308
Query: 310 LTSRQLVEYIVLDVEVVS----SEVNVGGS---KYVLADAQVARVSDFGKNDTIFSIRTH 362
QL EY VL VE V+ V GG+ K++LAD + R D G DT + RT
Sbjct: 309 CDPHQLTEYTVLQVERVADSDVKHVKGGGAKSKKHLLADVWLMRSQDMGVVDTQYHCRTF 368
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLL+ GD G DL ++N N+ L++ K LP+ +++KK + ++ R R R+WKL
Sbjct: 369 LGHLLSAGDTVKGLDLVNSNVNNKALEQMKAETLPDVVIVKKYFGDRSRRHRK--RNWKL 426
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K++ EV + ++Y FL DLEE+ + R NI++Y ++ + +S D +
Sbjct: 427 KTMTKEV-----ALHENAAERDYMGFLEDLEEDGDYRKNINIYVDRSKNIAVESS--DED 479
Query: 483 DVPSVPLDELLADLDL 498
P + L E+L D +
Sbjct: 480 AAPQISLQEMLEDFHI 495
>gi|380018901|ref|XP_003693357.1| PREDICTED: 60S ribosomal export protein NMD3-like [Apis florea]
Length = 502
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/496 (45%), Positives = 316/496 (63%), Gaps = 19/496 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC CGI + PN ANMCVACLR++VD+TE + K I C C+ YLQPP WI A LE
Sbjct: 13 ILCCICGISIEPNPANMCVACLRTQVDVTENIPKQATIHFCKGCERYLQPPGEWIHAALE 72
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELLT C+K+LK LNRV+L++A F+WTEPHS R+KVKL VQ EV+ GA+L+Q ++VEY
Sbjct: 73 SRELLTLCLKKLKGLNRVKLIDAGFVWTEPHSMRLKVKLTVQAEVIGGAVLQQVFIVEYT 132
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MC+ C R +A D W A VQ+RQ T+++TF+YLEQLILKH A + I + +G
Sbjct: 133 INHQMCNDCHRTEAK-DYWRALVQVRQRATNKKTFYYLEQLILKHKAHEHTLGIKAIHEG 191
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFFF N + A K V+F+ V P R H K+L+SHD SN +NYK+T+SVEI PI R+ +
Sbjct: 192 LDFFFANEATARKMVDFLSSVIPCRYDHSKKLISHDIHSNIYNYKFTYSVEIVPISRDSV 251
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLP K++ LG + + + K+TN I L+D + + L+A YWR +F S+ +QL+
Sbjct: 252 VCLPRKLSHQLGGINSICLVYKITNFIHLIDVSSGQVAELNASLYWRHAFNSICDPKQLI 311
Query: 317 EYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY V+D+E + + K+++AD + R D G ND + RTHLGH+L P
Sbjct: 312 EYTVMDIEQIKFKDRKFFPGQGTISDKHIIADVWLVRSCDLGINDNLIHTRTHLGHILKP 371
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD ALGY L +N ND + ++P+ IL KK+Y R +R + R+WKLK M
Sbjct: 372 GDTALGYALNDSNINDKNFEILNKDLIPDIILTKKNYTNDRATRR-RIRTWKLKH--MLP 428
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK-DYQPSEMASVTDGEDVPSVP 488
D TD N +Y EFL D+EENPE+R NI+++RN+ P + ++D P +
Sbjct: 429 DKDNMTTD----NNDYYEFLEDIEENPEMRQNINIFRNRMKTIPIDTNELSD-PSCPQIT 483
Query: 489 LDELLADLDLKSDDGE 504
L+E+L DL + DD E
Sbjct: 484 LEEMLDDLAI--DDVE 497
>gi|336265764|ref|XP_003347652.1| 60S ribosomal export protein NMD3 [Sordaria macrospora k-hell]
gi|380091186|emb|CCC11043.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 519
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/510 (42%), Positives = 318/510 (62%), Gaps = 25/510 (4%)
Query: 5 AGMFTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDC 62
A + +T ++LCC CG P+ +A +C C++S VDI++G+Q+ + C +CD
Sbjct: 10 APLMGSARTGATILCCNCGAPIDGTSSAGALCYDCIKSTVDISQGIQREATLHFCKDCDR 69
Query: 63 YLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVL 122
+L PP +W+ A ES+ELL+ C+KRL+NL +VR+ +A FIWTEPHS+RIKV++ VQ +V
Sbjct: 70 WLLPPNSWVTASPESRELLSLCLKRLRNLGKVRITDARFIWTEPHSRRIKVQVTVQDQVA 129
Query: 123 NGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHD 182
+G +++QS+ V YV C C++ + W AAVQ+RQ VTH+RTF +LEQLILKH
Sbjct: 130 DGVLMQQSFEVTYVVASQQCKDCAK-SYTANVWRAAVQVRQKVTHKRTFLFLEQLILKHQ 188
Query: 183 AAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKY 242
A I I + GIDF+F ++ A F+ F+ V PV ++ + L+S D + N +YKY
Sbjct: 189 AHRDTINIKEERDGIDFYFAQKNQAEGFISFLKSVVPVLTKESRHLISADTHTGNKSYKY 248
Query: 243 TFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW 302
+SVEI P+CR+DL+ LP K+A S+GN+ PLV+C ++ S+ LLDP TL+ + AD YW
Sbjct: 249 NYSVEIVPVCRDDLVALPLKLAKSIGNISPLVLCHRIGTSVNLLDPNTLQTAEVSADIYW 308
Query: 303 RSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTH 362
R+ F L + LVE+IV+D+E V K++L++ QVAR SD G ND ++ RTH
Sbjct: 309 RAPFHPLAGTPDLVEFIVMDIE----PTGVRKGKWLLSEVQVARASDLGVNDNVYFTRTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKP 417
LG LL GD LGY L N N +E K G ++P+ IL+KK + +R ++
Sbjct: 365 LGQLLRAGDSVLGYMLEGTNFNSDDLEAIEASKAYGSMIPDVILVKKHFPNRRRNRKR-- 422
Query: 418 RSWKLKSLDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRN--KDYQPSE 474
+WKLK + + + + DQ KM+ EYE FLRD+EE+ ELR ++LY+N K + ++
Sbjct: 423 -NWKLKRMTKDEGELLPKDKDQAKMDAEYEMFLRDVEEDEELRAALALYKNSLKTKREAD 481
Query: 475 MASVTDG-------EDVPSVPLDELLADLD 497
S+ D ED P + +DELL D +
Sbjct: 482 AMSIADTDMMTEAEEDGPKISMDELLDDFE 511
>gi|440639899|gb|ELR09818.1| nonsense-mediated mRNA decay protein 3 [Geomyces destructans
20631-21]
Length = 521
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/511 (41%), Positives = 327/511 (63%), Gaps = 27/511 (5%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
QT ++LCC CG P+ A +A +C C++ +D++ G+Q+ + C +C+ +L PP +
Sbjct: 20 QTAATILCCNCGAPIDGAASANALCYDCVKLTMDVSGGIQREATLHFCRDCERWLLPPTS 79
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
+I A ES+ELL C+K+L+ L++VR+++A FIWTEPHS+RIK+KL +Q V G +L+Q
Sbjct: 80 YIVAAPESRELLALCLKKLRGLHKVRIIDASFIWTEPHSRRIKIKLTIQDSVSEGVVLQQ 139
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ +EYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH A +I
Sbjct: 140 SFEIEYVVAYQQCPDCAK-SYTANTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDSIN 198
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I ++ G+DF+F R+ A FV+F+ VAPV+S+ ++L+S D ++ +YK+++S+E+
Sbjct: 199 IKEVKDGLDFYFAARNQATAFVDFLTSVAPVKSKKSQELISMDIHTSTKSYKFSYSIELV 258
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP K+A +GN+ P+ +C +V +I LLDP TL+ + YWR+ F L
Sbjct: 259 PICKDDLVALPIKLAHQIGNMNPIALCYRVGTAINLLDPSTLQTHDVSTPIYWRAPFSCL 318
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++LVE++VLD+++V E ++ LA+A +AR SD G ND F RTHLG++L+P
Sbjct: 319 ADVKELVEFVVLDIDLVGVE----KGRWALAEATIARASDLGHNDKTFFARTHLGNVLHP 374
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD +GY L +N N+ + D + +P+ +L+KK Y K K+ K R+W+LK
Sbjct: 375 GDSVMGYVLSESNFNNPQYDALENSSTYSSYIPDVMLVKKFYARK---KKPKNRNWRLKR 431
Query: 425 LDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYR----NKDYQPSEMAS 477
++ E D KG DQEKM+K+YE FLRD+EE+ ELR ++LY+ K+ M
Sbjct: 432 MNKEEGDLLPKKG--DQEKMDKDYEMFLRDVEEDTELRQTLALYKAQQAQKEVDAMSMTE 489
Query: 478 VTDGED--VPSVPLDELLADL-DLKSDDGEG 505
+DGE+ P + +DELL + DLK +D G
Sbjct: 490 TSDGEEDNTPQIDMDELLDEFDDLKVNDAGG 520
>gi|358384730|gb|EHK22327.1| hypothetical protein TRIVIDRAFT_84129 [Trichoderma virens Gv29-8]
Length = 515
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/498 (43%), Positives = 311/498 (62%), Gaps = 21/498 (4%)
Query: 13 TVGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
T ++LC CG P+ A C C++ DI++G+Q+ I C +C+ +L PP +W
Sbjct: 19 TSATILCHNCGAPIDGTTATGAACYDCIKLTNDISQGIQREATIQQCRDCERWLLPPSSW 78
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I A ES+ELL C+K+L+ LN+VR+V+A FIWTEPHS+R+KVKL VQ V G +L+QS
Sbjct: 79 IAAMPESRELLALCLKKLRGLNKVRIVDASFIWTEPHSRRVKVKLTVQDSVQQGVLLQQS 138
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ V YV C C + P+ W A VQ+RQ V H+RTF +LEQLILKH A I I
Sbjct: 139 FEVVYVVTTQQCPECQK-SFTPNHWRACVQVRQKVLHKRTFHFLEQLILKHGAHRETINI 197
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ GIDFFF R+ A KFV+F+ V PV+ R ++L+S D ++ +YK+TFS E+ P
Sbjct: 198 KEAKDGIDFFFSVRNQAEKFVDFLNSVVPVKVRSSQELISMDTHTSKKSYKFTFSAELVP 257
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
+CR+DL+ LP K+A GN+ PLV+C K+ ++ L+DP TL+ +++ YWR+ F +L
Sbjct: 258 VCRDDLVALPIKLAKQSGNISPLVLCHKIGTAVYLMDPQTLQTAEVNSSVYWRAPFTALA 317
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
+ +LVE++++D+E + K+VLA+A VAR SD G ND F RTHLG+LL PG
Sbjct: 318 DAMELVEFVIMDIEPTHTR----KGKWVLAEATVARASDLGVNDKTFFTRTHLGNLLQPG 373
Query: 371 DYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
D A+GY L N N+ E D + +P+ +L+KK Y +R +R +WKLK +
Sbjct: 374 DSAMGYMLSGTNFNNPEFDAIEESNTYSSTVPDVVLVKKHYPNRRRNRRR---NWKLKRM 430
Query: 426 DM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED- 483
D E + + DQE+M+KEYE FLRD+EE+ ELR ++LY+N + S+ + ED
Sbjct: 431 DKDEGELLPKKADQERMDKEYEMFLRDVEEDEELRAALALYKNPKKANVDEMSIAETEDD 490
Query: 484 ----VPSVPLDELLADLD 497
VP V +DELL D D
Sbjct: 491 EDDGVPGVNMDELLDDFD 508
>gi|169775831|ref|XP_001822382.1| 60S ribosomal export protein NMD3 [Aspergillus oryzae RIB40]
gi|83771117|dbj|BAE61249.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871083|gb|EIT80249.1| NMD protein affecting ribosome stability and mRNA decay
[Aspergillus oryzae 3.042]
Length = 520
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/512 (42%), Positives = 320/512 (62%), Gaps = 30/512 (5%)
Query: 14 VGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
++LCC CG P+ A +C C+RS VDI+EG+Q+ ++ C +C+ +L PP +W+
Sbjct: 18 AATILCCNCGAPIDGTTAAGALCQDCVRSTVDISEGIQREAVVHTCRDCERWLLPPNSWV 77
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A LESKELL C+++L+ L +VR+++A FIWTEPHS+RIKVK+ +Q+EV G IL+Q++
Sbjct: 78 SAALESKELLALCLRKLRGLTKVRIIDASFIWTEPHSRRIKVKITIQQEVAAGTILQQAF 137
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
VVEYV C C R +P WVA+VQ+RQ V H+RTF YLEQLIL+H A I
Sbjct: 138 VVEYVVHYQQCSDCLR-SFSPHTWVASVQVRQKVPHKRTFLYLEQLILRHRAHQETNNIK 196
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ G+DF+F RSHA K VEF+ V PV+ + +L+S D ++ +YK+++SVEI PI
Sbjct: 197 EAKDGLDFYFSQRSHAEKMVEFLSSVVPVKVKKASELISMDIHTSTKSYKFSYSVEIVPI 256
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C++DL+ +P K+A S+GN+ PL +C ++ +I LLDP TL+ + YWRS FK+L
Sbjct: 257 CKDDLVAIPIKLARSIGNISPLTLCYRIGTTIQLLDPNTLQTAEVPGATYWRSPFKNLAD 316
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
+LVE+IV+D+E V ++ LA+A VAR SD G ND + RTHLG +L+ GD
Sbjct: 317 VTELVEFIVMDIEPVGR----SNGRFHLAEATVARASDLGSNDQTYFTRTHLGGILHVGD 372
Query: 372 YALGYDLYSANNNDMELDKYKG-----LVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
LGY L + ND D + +P+ +L+KK Y RK++K R+W++K +
Sbjct: 373 SVLGYHLTGSMFNDPNYDAIEASSQYSSTIPDVVLVKKHY----TRKKNKSRNWRVKRMA 428
Query: 427 MEVDDS----------KGRTDQEKMNKEYEEFLRDLEENPELRFNISLY---RNKDYQPS 473
E ++ K ++E++ ++E FLRD+EE+ ELR I LY +N++
Sbjct: 429 REHEEEALQASTGGSRKQEQERERLEADFEMFLRDVEEDQELRGTIELYKARKNQNAGGM 488
Query: 474 EMASVTDGEDVPSVPLDELLADLD-LKSDDGE 504
EM +D EDVP + +DELL D D L +D E
Sbjct: 489 EMDEDSDDEDVPKINMDELLDDFDELNMNDDE 520
>gi|126133022|ref|XP_001383036.1| 60S ribosomal export protein NMD3 [Scheffersomyces stipitis CBS
6054]
gi|126094861|gb|ABN65007.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 517
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/500 (46%), Positives = 319/500 (63%), Gaps = 21/500 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q + +VLCC CG+PM MC C++ VDITEG+ + +S C C+ +LQPP+ W
Sbjct: 15 QPIATVLCCNCGVPMDGSQGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPQQW 74
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C+++LK LN+VRLV+A FIWTEPHS+RI+VKL VQ E + I++Q+
Sbjct: 75 IRAELESRELLALCLRKLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIVQQT 134
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH+A + I
Sbjct: 135 FEVEYVVIAMQCPDCAK-SYTTNTWKATVQIRQKVPHKRTFLYLEQLILKHNAHVDTVSI 193
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DFF+ ++HA K ++F+ VAPV+++ ++L+S D +S N YK+++SVEI P
Sbjct: 194 KEAKDGLDFFYSQKNHAAKMLDFLSAVAPVKAKKSEELISVDTQSGNSQYKFSYSVEIVP 253
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
ICR+DL+ LP K+A SLGN+ LVIC K+TN++ LDP TL+ L A YWR+ F SLL
Sbjct: 254 ICRDDLVVLPKKLAHSLGNISRLVICSKITNAVQFLDPLTLQTADLAASVYWRNPFASLL 313
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE++VLDVE +V G K VLAD +V R D G ND + IRTHLG +L+PG
Sbjct: 314 DVTQLVEFVVLDVEPTG---DVRG-KNVLADIEVCRAKDMGVNDHTYYIRTHLGAILHPG 369
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME-- 428
D LGY L + N N D PE +LIKK Y K K++K R WKLK + E
Sbjct: 370 DSCLGYFLTNTNFNSDLWDTLDTDNTPEVVLIKKHYARK--NKKNKYRQWKLKRMAKEHS 427
Query: 429 ----VDDSK-GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA------S 477
DDS+ R +QE+ ++YE FL++LEE+ ELR I+LY+ P +
Sbjct: 428 DIVANDDSRQARQEQERAERDYEIFLQELEEDEELRQTINLYKAGAAPPPPPSHGDIEEL 487
Query: 478 VTDGEDVPSVPLDELLADLD 497
+ E+ P + +DELL +LD
Sbjct: 488 EEEDEEAPQIGIDELLDELD 507
>gi|242817480|ref|XP_002486964.1| 60S ribosomal export protein NMD3 [Talaromyces stipitatus ATCC
10500]
gi|218713429|gb|EED12853.1| nonsense-mediated mRNA decay protein 3 [Talaromyces stipitatus ATCC
10500]
Length = 523
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/513 (41%), Positives = 319/513 (62%), Gaps = 28/513 (5%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI++ +Q+ + C +C+ +LQPP T
Sbjct: 19 QPEATILCCNCGAPIDGTISAGALCHDCIKLTVDISQDVQRESALHFCRDCERWLQPPNT 78
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W+ A LES+ELL C+++L+ L+RVR+++A FIWTEPHS+RIKVK+ +Q+E G IL+Q
Sbjct: 79 WVSAALESRELLALCLRKLRGLSRVRIIDASFIWTEPHSRRIKVKITIQQEAFQGTILQQ 138
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
++ VEYV C C++ + W A VQ+RQ V H+R+F YLEQL+LKH+A I
Sbjct: 139 TFEVEYVVSTQQCPDCAKSFTH-HSWRACVQVRQKVPHKRSFLYLEQLMLKHNAHRDTIN 197
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + G+DFFF R+HA K V+F+ V PVR + ++L+S D ++ YK T+SVE+
Sbjct: 198 IKEAKDGLDFFFSQRNHAEKMVDFLSSVVPVRVKKSQELISMDIHTSVRQYKITYSVELI 257
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP K+A SLGN+ PL +C +V SI+LLDP TL+ + + YWR FK+L
Sbjct: 258 PICKDDLVALPMKMARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPSAIYWRQPFKNL 317
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++LVE++V+D+E V ++ LA+ VAR SD G ND + RTHLG +L+
Sbjct: 318 ADVQELVEFVVMDIEPVGE----SKGRFFLAEITVARASDMGVNDNSYFTRTHLGGVLHV 373
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD LGY L N ND D + +P+ +L++K Y K K+ K R+WKLK
Sbjct: 374 GDSVLGYHLTGTNFNDPNFDAIQESNQYASTIPDVVLVRKYYARK---KKPKSRNWKLKR 430
Query: 425 LDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD------------YQP 472
++ E ++ + D +++ ++E FLRD+EE+ ELR +SLY+ K+ +
Sbjct: 431 MNYEEEEPGRKQDADRLEADFEMFLRDIEEDQELRSTLSLYKAKNETRPRPDRMDVVEEK 490
Query: 473 SEMASVTDGEDVPSVPLDELLADLD-LKSDDGE 504
EMA + ++VP + +DELL + D L DD E
Sbjct: 491 DEMADDSSDDEVPKINMDELLDEFDELNMDDAE 523
>gi|121716925|ref|XP_001275953.1| 60S ribosomal export protein NMD3 [Aspergillus clavatus NRRL 1]
gi|119404110|gb|EAW14527.1| nonsense-mediated mRNA decay protein 3 [Aspergillus clavatus NRRL
1]
Length = 533
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/532 (40%), Positives = 323/532 (60%), Gaps = 43/532 (8%)
Query: 1 MAQDAGMFTVPQ--TVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISH 56
M DA + PQ ++LCC CG P+ +A +C C+R VDI++G+ + +I
Sbjct: 3 MDLDAPVPFAPQESITATILCCNCGAPIDGTTSAGALCQDCVRLTVDISQGIPREGVIHF 62
Query: 57 CPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLK 116
C +C+ +LQPP W+ A LESKELL C+++L+ L +VR+++A FIWTEPHS+R+KVK+
Sbjct: 63 CRDCERWLQPPTAWVSAALESKELLALCLRKLRGLAKVRIIDASFIWTEPHSRRVKVKIT 122
Query: 117 VQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQ 176
+Q+E G I++QS+ VEYV C C + + + W A+VQ+RQ V H+RTF YLEQ
Sbjct: 123 IQQEAFQGTIVQQSFEVEYVVHAQQCPDCQKSYTH-NTWRASVQVRQKVPHKRTFLYLEQ 181
Query: 177 LILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSN 236
LILKH+A + I + G+DFFF R+HA K ++F+ VAP++ + ++L+S D ++
Sbjct: 182 LILKHNAHQDTVNIKEAKDGLDFFFAQRNHAEKMIDFLSSVAPIKVKKSQELISMDIHTS 241
Query: 237 NFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFL 296
+YK+++SVE+ PIC++DL+ LP K+A SLGN+ PL +C +V +++L+DP TL+ +
Sbjct: 242 TKSYKFSYSVELVPICKDDLVALPIKLARSLGNVSPLTLCYRVGTALSLIDPSTLQTADV 301
Query: 297 DADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTI 356
YWR+ FK+L +LVE+IV+D+E V ++ LA+A VAR SD G ND
Sbjct: 302 PTMTYWRAPFKNLADVAELVEFIVMDIEPVGR----SNGRFHLAEATVARASDLGSNDQT 357
Query: 357 FSIRTHLGHLLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRL 411
+ RTHLG +L+ GD LGY L +N ND +E ++P+ +L+KK Y K
Sbjct: 358 YFTRTHLGGILHVGDSVLGYLLTGSNFNDPNFEALEASSQYSSIIPDVVLVKKHYARK-- 415
Query: 412 RKRSKPRSWKLKSLDMEVDDS-----------KGRTDQEKMNKEYEEFLRDLEENPELRF 460
K K R+W+LK + E ++ K +QE+M ++E FLRD+EE+ ELR
Sbjct: 416 -KNKKTRNWRLKRMAREYEEEALQQQSGSLSRKQEQEQERMEADFEMFLRDVEEDQELRG 474
Query: 461 NISLYRNKD-YQPSEMASVTDG--------------EDVPSVPLDELLADLD 497
++LY+ K+ Q MA V G + VP + +DELL D D
Sbjct: 475 TLALYKAKNAVQNDRMAGVESGAGGMDMDDDDDESEDGVPKISMDELLDDFD 526
>gi|50289849|ref|XP_447356.1| 60S ribosomal export protein NMD3 [Candida glabrata CBS 138]
gi|49526666|emb|CAG60293.1| unnamed protein product [Candida glabrata]
Length = 519
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/495 (43%), Positives = 313/495 (63%), Gaps = 20/495 (4%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG P+ + MC C++ VDIT+G+ + IS C C+ +LQPP WI+
Sbjct: 19 VATVLCCNCGTPIDGSSGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIR 78
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI++KL VQ E + I++Q++
Sbjct: 79 AELESRELLAICLRRLKGLNKVRLVDASFIWTEPHSRRIRIKLTVQGEAMANTIIQQTFE 138
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C+R + W A VQ+RQ V H+RTF YLEQLILKH+A I I +
Sbjct: 139 VEYVVIAMQCADCAR-SYTTNTWRATVQIRQKVPHKRTFLYLEQLILKHNAHVDTINIQE 197
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+G ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI PIC
Sbjct: 198 AKDGLDFFYGQKNHAVKMLDFLNSVVPIKFKKSEELISQDTHTGASTYKFSYSVEIVPIC 257
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
++DL+ LP K+A S+G++ V+C KV+N++ +DP TL+ L YWR+ F +L
Sbjct: 258 KDDLVVLPKKLAKSMGDISQFVLCTKVSNTLQFMDPMTLQTADLSPQVYWRTPFNALADV 317
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QLVE+IVLDVE + VLAD VAR SD G ND ++ +RTHLG + + GD
Sbjct: 318 SQLVEFIVLDVE----PTGMSKGNRVLADITVARSSDLGMNDQVYYVRTHLGAICHAGDS 373
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME---V 429
+GY + ++N N D +P+ +L+KK Y+ RK K R+WKLK + E +
Sbjct: 374 VMGYFVGNSNYNSDLFDGLNIDHVPDVVLVKKLYQ----RKTKKSRNWKLKRMAKEHKDI 429
Query: 430 DDSKG------RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMASVTDGE 482
D S+ R + E+ ++YE FL++LEE+ ELR I+LY+N++ P E + E
Sbjct: 430 DASQDYNNRSQRQEMERAERDYELFLQELEEDSELRQTINLYKNQNAAVPQEAHEEEEDE 489
Query: 483 DVPSVPLDELLADLD 497
D P + +DELL +LD
Sbjct: 490 DAPQIDIDELLDELD 504
>gi|449295746|gb|EMC91767.1| hypothetical protein BAUCODRAFT_304165 [Baudoinia compniacensis
UAMH 10762]
Length = 520
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/510 (41%), Positives = 327/510 (64%), Gaps = 24/510 (4%)
Query: 11 PQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
P T ++LC CG P+ +A +C CL+ VDIT G++K I+ C +CD +L PP
Sbjct: 18 PTTAATILCYNCGAPIDGTQSAGALCSDCLKLTVDITRGIEKEGILLMCRDCDRWLSPPS 77
Query: 69 TWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W+ A ES+ELL C+++L+ L++ R+V+A FIWTEPHS+RIK+K+ VQ+E G IL+
Sbjct: 78 QWVVAAPESRELLALCLRKLRGLSKSRIVDASFIWTEPHSRRIKLKITVQQEAFQGTILQ 137
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q++ VE+VQQ C C++ + + W A VQ+RQ V H+RTF YLEQLILKH A I
Sbjct: 138 QTFDVEFVQQFKQCPDCAKSYTH-NTWRAVVQVRQKVPHKRTFLYLEQLILKHGAHKDTI 196
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
I ++ GIDF+F R+HA KFV+F+ V+PVR++ ++L+S D +++ +YK+T+S E+
Sbjct: 197 NIKEVHNGIDFYFSQRNHAEKFVDFLTSVSPVRTKKSQELISMDIHTSSRSYKFTYSCEL 256
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
P+C++DL+ LP K+A +GN+ PL +C ++ ++ LLDP TL+ L YWR+ F
Sbjct: 257 VPVCKDDLVALPVKLAKQIGNISPLTLCYRIGTAVNLLDPNTLQVSDLSTPIYWRTPFAP 316
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
L + LVE++V+D+E + + +++LA+A +AR SD G NDT + +RTHLG +L+
Sbjct: 317 LADVKDLVEFVVMDIEPIGPQ----KGRFLLAEATIARASDLGVNDTTYLVRTHLGGVLH 372
Query: 369 PGDYALGYDLYSA--NNNDMEL---DKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
GD +GY L NN++ E K +P+ IL+KK Y R+++K R+WKL+
Sbjct: 373 AGDSVMGYHLTGTQFNNDNFEAIQESKQYSSTIPDVILVKKHYTA---RRKTKARNWKLR 429
Query: 424 SLDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD-YQPSEMASV--- 478
+ E + K R D ++ +YE+FL+DLE +PELR + +YRN+D QP +A
Sbjct: 430 RMAKEESEMKPRKQDADREEVDYEQFLQDLEADPELREGLKMYRNRDALQPDAVADAGDM 489
Query: 479 -TDGEDVPS--VPLDELLADL-DLKSDDGE 504
TDGED +P+++L+ ++ D+ +D E
Sbjct: 490 ETDGEDDDGLEIPMEQLIDEMEDMGMEDEE 519
>gi|367016341|ref|XP_003682669.1| 60S ribosomal export protein NMD3 [Torulaspora delbrueckii]
gi|359750332|emb|CCE93458.1| hypothetical protein TDEL_0G00910 [Torulaspora delbrueckii]
Length = 517
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/511 (43%), Positives = 320/511 (62%), Gaps = 27/511 (5%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG+P+ MC C++ VDIT G+ + +S C C+ +LQPP W++
Sbjct: 18 VATVLCCNCGVPIDGSGGLVMCYDCIKMTVDITAGIPREANVSFCRNCERFLQPPGQWVR 77
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI+VKL VQ E + I++Q++
Sbjct: 78 ADLESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRVKLTVQGEAIANTIIQQTFE 137
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C++ W AAVQ+RQ V H+RTF YLEQLILKH+A I I++
Sbjct: 138 VEYVVIAMQCPDCAK-SYTTHTWRAAVQIRQKVPHKRTFLYLEQLILKHNAHVDTISISE 196
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+G ++HAVK ++F+ P++ + ++L+S D + + YK+++SVEI PIC
Sbjct: 197 AKDGLDFFYGQKNHAVKMIDFLNAAVPIKYKKSEELISQDTHTGSSTYKFSYSVEIVPIC 256
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A SLGN+ P V+C KVTN++ LDP TL+ + A YWR+ F SL
Sbjct: 257 RDDLVVLPGKLAKSLGNISPFVLCSKVTNAVQFLDPNTLQTADVPASVYWRAPFHSLADV 316
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QL+E+IVLDVE V K VLAD VAR +D G ND + +R+HLG + + GD
Sbjct: 317 SQLIEFIVLDVE----PTGVSRGKRVLADITVARAADLGVNDQEYYVRSHLGAICHAGDS 372
Query: 373 ALGYDLYSANNNDMELDKYKGLVL---PETILIKKSYEEKRLRKRSKPRSWKLKSL---D 426
+GY Y AN+N D + GL + P+ +L+KK Y RK K R+WKLK +
Sbjct: 373 VMGY--YVANSN-YNSDLFDGLNIDHVPDVVLVKKLYR----RKTKKNRNWKLKRMAKEH 425
Query: 427 MEVDDSKG------RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS-EMASVT 479
E+D S+ R + E+ ++YE FL++LEE+ ELR ++LY++ +
Sbjct: 426 KEIDASQDYSSRAQRQEMERAERDYEVFLQELEEDDELRQGVNLYKSAGQASAEHEMEEE 485
Query: 480 DGEDVPSVPLDELLADL-DLKSDDGEGDDSM 509
D ED P + +DELL +L D+ +DG D+++
Sbjct: 486 DEEDAPQIDIDELLDELDDMTLEDGGADETV 516
>gi|358374389|dbj|GAA90981.1| nonsense-mediated mRNA decay protein 3 [Aspergillus kawachii IFO
4308]
Length = 525
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/521 (40%), Positives = 322/521 (61%), Gaps = 34/521 (6%)
Query: 8 FTVPQ--TVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
F PQ ++LCC CG P+ +A +C C++ VDI++G+Q+ ++ C +C+ +
Sbjct: 11 FEAPQEQIAATILCCNCGAPIDGTTSAGALCQDCVKLTVDISQGIQREAVLHCCKDCERW 70
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
LQPP +W+ A LESKELL C+++L+ L++VR+++A FIWTEPHSKRIKVK+ +Q+E
Sbjct: 71 LQPPTSWVSAALESKELLAHCLRKLRGLSKVRIIDASFIWTEPHSKRIKVKITIQQEAFQ 130
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
G I++Q++ VEYV C C + + W +++QLRQ V H+RTF YLEQ+ILKH+A
Sbjct: 131 GTIVQQTFEVEYVVASLQCPDCKK-SFTVNTWNSSIQLRQKVPHKRTFLYLEQIILKHNA 189
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
I I + G+DF+F R+HA K VEF+ V P + + ++L+S D ++ +YK+T
Sbjct: 190 HRDTINIKEAKDGLDFYFAQRNHAEKMVEFLSSVVPTKVKKSQELISMDIHTSTKSYKFT 249
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
FS+E+ PIC++DL+ LP K+A SLGN+ PL +C +V S+ LLDP TL+ + + YWR
Sbjct: 250 FSIELIPICKDDLVALPIKLARSLGNISPLALCYRVGTSVNLLDPNTLQTADVPTNTYWR 309
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
S F+SL +L E+I++D+E+V +Y LA+A VAR SD G ND + RTHL
Sbjct: 310 SPFRSLADVTELTEFIIMDIELVGR----SNGRYYLAEATVARASDLGSNDQTYFTRTHL 365
Query: 364 GHLLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPR 418
G +L+ GD LGY L N ND +E +P+ +L+KK Y K K++K R
Sbjct: 366 GGVLHVGDSVLGYHLTGTNFNDPNFEAIEASGQYSSAIPDVVLVKKFYARK---KKNKNR 422
Query: 419 SWKLKSLDMEVDDS-----------KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
+W+LK + +E ++ K ++ ++ +++E FLRD+EE+ ELR + LY+
Sbjct: 423 NWRLKRMALEYEEEAAQQAAGTLNRKQEAERNRLEEDFEMFLRDVEEDQELRGTLDLYKA 482
Query: 468 KDYQPSEMAS-----VTDGEDVPSVPLDELLADLD-LKSDD 502
+ P E +D E+VP + +DELL D D L DD
Sbjct: 483 RRSAPVEQGGMDMDEDSDDEEVPKINMDELLDDFDELNMDD 523
>gi|367046288|ref|XP_003653524.1| 60S ribosomal export protein NMD3 [Thielavia terrestris NRRL 8126]
gi|347000786|gb|AEO67188.1| hypothetical protein THITE_2116024 [Thielavia terrestris NRRL 8126]
Length = 522
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/512 (42%), Positives = 314/512 (61%), Gaps = 23/512 (4%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCP 58
MA A M +T ++LCC CG+P+ +A +C C++S VDI++G+ + + C
Sbjct: 9 MAPMAPMAGTARTGATILCCNCGVPIDGTASAGALCYDCIKSTVDISQGIPREGTLHFCR 68
Query: 59 ECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQ 118
+CD +L PP +W+ A ES+ELL+ C+KRL+NL +VR+++A F+WTEPHS+RIKVK+ +Q
Sbjct: 69 DCDRWLMPPASWVAAAPESRELLSLCLKRLRNLGKVRIIDARFVWTEPHSRRIKVKITIQ 128
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
V +G +++QS+ V YV C C++ + W A VQ+RQ VTH+RTF LEQLI
Sbjct: 129 DSVADGVLMQQSFEVVYVVAYQQCRECAK-SYTANVWRANVQVRQKVTHKRTFLLLEQLI 187
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
LKH A I I + GIDFFF +R+ A F+ F+ V PV + + L+S D + N
Sbjct: 188 LKHQAHRDTINIKEEKDGIDFFFAHRNQAEAFIHFLKSVVPVNVKDSRHLISADTHTGNK 247
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
YK+ +S EI PICR+DL+ LP K+A S+GN+ PLV+C K+ S+ LLDP TL+ L +
Sbjct: 248 QYKFNYSAEIVPICRDDLVALPLKLAKSIGNISPLVLCYKIGTSVNLLDPNTLQTAELSS 307
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
D YWR+ F+ L + ++VE+IV+D+E K+VL +A VAR SD G ND +
Sbjct: 308 DVYWRAPFQPLAGATEMVEFIVMDIEPTGQR----RGKWVLGEATVARASDLGVNDNTYF 363
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRK 413
RTHLGHLL GD +GY L N N LD + G +P+ +L+KK Y +R +
Sbjct: 364 ARTHLGHLLRAGDSVMGYMLTGTNFNSDALDAIENSRAYGSTIPDVVLVKKHYPNRRKNR 423
Query: 414 RSKPRSWKLKSLDM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN---KD 469
R +WKLK + E + + DQ +M EYE FLRD+EE+ ELR ++LY+N K
Sbjct: 424 RR---NWKLKRMAKDEGELAPKPADQARMEAEYEMFLRDVEEDEELRAALALYKNTKKKK 480
Query: 470 YQPSEMASVTDGE----DVPSVPLDELLADLD 497
Q ++ S+ + E D P + +DELL D D
Sbjct: 481 PQDADAMSIAETEMTEDDGPKINMDELLDDFD 512
>gi|340521691|gb|EGR51925.1| predicted protein [Trichoderma reesei QM6a]
Length = 515
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/499 (43%), Positives = 311/499 (62%), Gaps = 21/499 (4%)
Query: 12 QTVGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
T ++LC CG P+ A C C++ DI++G+Q+ I C +C+ +L PP +
Sbjct: 19 HTAATILCHNCGAPIDGTTATGAACYDCIKLTNDISQGIQREATIQQCRDCERWLLPPSS 78
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A ES+ELL C+K+L+ LN+VR+V+A FIWTEPHS+R+KVKL VQ V G +L+Q
Sbjct: 79 WISAMPESRELLALCLKKLRGLNKVRIVDASFIWTEPHSRRVKVKLTVQDAVQQGVLLQQ 138
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ V YV C C++ P+ W A VQ+RQ V H+RTF +LEQL+LKH A +
Sbjct: 139 SFEVVYVVAHQQCPECAK-SFTPNHWRACVQVRQKVLHKRTFHFLEQLVLKHGAHRETLN 197
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + GIDFFF R+ A KFV+F+ V PV+ + ++L+S D ++ +YK+TFS E+
Sbjct: 198 IKEAKDGIDFFFSVRNQAEKFVDFLNSVVPVKVKSSQELISMDTHTSKKSYKFTFSAELV 257
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
P+CR+DL+ LP K+A GN+ PLV+C K+ ++ L+DP TL+ + + YWR+ F +L
Sbjct: 258 PVCRDDLVALPIKLAKQSGNISPLVLCHKIGTAVYLMDPQTLQTAEVSSSIYWRAPFTAL 317
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ +LVE+I++D+E + K+VLA+A VAR SD G ND + RTHLG+LL P
Sbjct: 318 ADAMELVEFIIMDIEPTPTR----KGKWVLAEATVARASDLGVNDKTYFTRTHLGNLLQP 373
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD A+GY L N N+ E D + +P+ +L+KK Y +R +R +WKLK
Sbjct: 374 GDSAMGYMLSGTNFNNPEFDAIEESNTYSSTVPDVVLVKKHYPNRRRNRRR---NWKLKR 430
Query: 425 LDM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
++ E D + DQE+M+KEYE FLRD+EE+ ELR ++LY+N E S+ + ED
Sbjct: 431 MNKDEGDLLPKKADQERMDKEYEMFLRDVEEDEELRAALALYKNPKKTNDEEMSIAETED 490
Query: 484 -----VPSVPLDELLADLD 497
VP V +DELL D D
Sbjct: 491 DEEDGVPGVNMDELLDDFD 509
>gi|336471426|gb|EGO59587.1| hypothetical protein NEUTE1DRAFT_61157 [Neurospora tetrasperma FGSC
2508]
gi|350292520|gb|EGZ73715.1| NMD3-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 519
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/521 (42%), Positives = 325/521 (62%), Gaps = 34/521 (6%)
Query: 1 MAQDAGMFTVP-----QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVI 53
M DA M P +T ++LCC CG P+ +A +C C++S VDI++G+Q+
Sbjct: 1 MDLDAPMAMAPLMGSARTGATILCCNCGAPIDGTSSAGALCYDCIKSTVDISQGIQREAT 60
Query: 54 ISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKV 113
+ C +CD +L PP +W+ A ES+ELL+ C+K+L+NL +VR+ +A FIWTEPHS+R+KV
Sbjct: 61 LHFCKDCDRWLLPPASWVTAAPESRELLSLCLKKLRNLGKVRITDARFIWTEPHSRRVKV 120
Query: 114 KLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFY 173
++ VQ +V +G +++QS+ V YV C C++ + W AAVQ+RQ VTH+RTF +
Sbjct: 121 QVTVQDQVADGVLMQQSFEVTYVVASQQCKDCAK-SYTANVWRAAVQVRQKVTHKRTFLF 179
Query: 174 LEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDP 233
LEQLILKH A I I + GIDF+F ++ A F+ F+ V PV ++ + L+S D
Sbjct: 180 LEQLILKHQAHRDTINIKEERDGIDFYFAQKNQAEGFISFLKSVVPVLTKESRHLISADT 239
Query: 234 KSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRH 293
+ N +YKY +SVEI P+CR+DL+ LP K+A S+GN+ PLV+C ++ S+ LLDP TL+
Sbjct: 240 HTGNKSYKYNYSVEIVPVCRDDLVALPLKLAKSIGNISPLVLCHRIGTSVNLLDPNTLQT 299
Query: 294 CFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKN 353
+ AD YWR+ F L + LVE+IV+D+E S+ V G K++L++ QVAR SD G N
Sbjct: 300 AEVSADIYWRAPFHPLAGTPDLVEFIVMDIE--STGVRKG--KWLLSEVQVARASDLGVN 355
Query: 354 DTIFSIRTHLGHLLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEE 408
D ++ RTHLG L+ GD LGY L N N +E K G ++P+ +L+KK Y
Sbjct: 356 DNVYFTRTHLGQHLHAGDSVLGYMLEGTNFNSDALEAIESSKAYGSMIPDVVLVKKHYPN 415
Query: 409 KRLRKRSKPRSWKLKSLDMEVDDSK---GRTDQEKMNKEYEEFLRDLEENPELRFNISLY 465
+R ++ +WKLK M D+ + +DQ KM+ EYE FLRD+EE+ ELR ++LY
Sbjct: 416 RRRNRKR---NWKLKR--MAKDEGELLPKASDQAKMDAEYEMFLRDVEEDEELRAALALY 470
Query: 466 RN--KDYQPSEMASVTDG-------EDVPSVPLDELLADLD 497
+N K + ++ S+ D ED P + +DELL D +
Sbjct: 471 KNSLKTKREADAMSIADTDMMTEAEEDGPKISMDELLDDFE 511
>gi|401884164|gb|EJT48336.1| nonsense-mediated mRNA decay protein 3, putative [Trichosporon
asahii var. asahii CBS 2479]
gi|406695999|gb|EKC99296.1| nonsense-mediated mRNA decay protein 3, putative [Trichosporon
asahii var. asahii CBS 8904]
Length = 560
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/473 (43%), Positives = 308/473 (65%), Gaps = 33/473 (6%)
Query: 17 VLCCKCGIPMA-PNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
+LC CG ++ N + +CV CLR+ VDIT+G+ K +++ C C+ +L PP TW+ Q
Sbjct: 14 ILCADCGTVISSANGSGLCVGCLRNSVDITDGIPKESVVNFCKGCERFLSPPNTWVACQP 73
Query: 76 ESKELLTFCVKRL-KNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
ES+ELL C+K++ K L +VRL++A+FIWTEPHS+RIK+K+ +QKEVL +L+Q++V+
Sbjct: 74 ESRELLAICLKKIAKPLLKVRLIDAQFIWTEPHSRRIKLKITIQKEVLANTVLQQTFVLT 133
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
V Q C +C+R+ A + W A+VQ+RQ VTH+RTF +LEQLILKH+A I +
Sbjct: 134 LVVQTGQCPACTRLAAK-NTWKASVQVRQKVTHKRTFLFLEQLILKHNAHKDCTNINEKR 192
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DFF+ R++A+K VEF+ V PVR + +QL+S D + NYK+T+SVEI PIC++
Sbjct: 193 DGLDFFYTERNNAIKMVEFLASVVPVRVKGSEQLISQDTHNGTANYKFTYSVEIVPICKD 252
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
DL+C+P +A GN+ L IC +V N++ LLDP TL+ + A YWR F+SL +
Sbjct: 253 DLVCIPKNLARQWGNISQLTICSRVGNTLHLLDPLTLQQTDVTAPVYWRQPFESLAQTSD 312
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGK--------NDTIFSIRTHLGHL 366
LVE++VLD+E V ++VLADAQ+ R S G+ +D I+ +RTHLG +
Sbjct: 313 LVEFVVLDIE----PTGVQRGRWVLADAQITRASGSGQAADADGMGDDGIYHVRTHLGAI 368
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGL---VLPETILIKKSYEEKRLRKRSKPRSWKLK 423
L PGD LGYDL N N+ D ++G+ +P IL+KK+Y + RK+++PR+WKLK
Sbjct: 369 LQPGDTVLGYDLTHTNFNN---DAFEGIDPHRIPHVILVKKTYPNR--RKKNRPRNWKLK 423
Query: 424 SLDMEVDDSKG----------RTDQEKMNKEYEEFLRDLEENPELRFNISLYR 466
S+ E ++ DQ+ + ++YE FLRDLEE+ E+R ++LYR
Sbjct: 424 SIAKEAEEDTTVGRGALGRRGGVDQKNVERDYELFLRDLEEDKEMRAAVNLYR 476
>gi|91091920|ref|XP_967150.1| PREDICTED: similar to nonsense-mediated mrna decay protein
[Tribolium castaneum]
gi|270000793|gb|EEZ97240.1| hypothetical protein TcasGA2_TC011038 [Tribolium castaneum]
Length = 503
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/488 (45%), Positives = 317/488 (64%), Gaps = 19/488 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG P+ PN +NMCV CLR++VDITEG+ K V + C C+ Y PP W LE
Sbjct: 17 ILCCECGTPIEPNPSNMCVPCLRTKVDITEGIPKQVTLQFCRGCERYYSPPSEWTHCVLE 76
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
SKELL+ C+K+LK L+RV+LV+A F+WTEPHSKRIKVKL+V EVL GA+LEQ ++V+YV
Sbjct: 77 SKELLSLCLKKLKGLSRVKLVDAGFVWTEPHSKRIKVKLRVHGEVLGGAVLEQVFIVDYV 136
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
HMCD C R +A + W A VQ+RQ +++TF+YLEQLILKH A + I + G
Sbjct: 137 VSHHMCDDCHRSEAQ-NFWRALVQVRQKAENKKTFYYLEQLILKHKAHDNTLGIKPIHDG 195
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ +HA K V+F+ + P + H K+L+SHD SN +NYK+T+SVEI P+ ++ L
Sbjct: 196 LDFFYATEAHARKMVDFLAAMLPCKYNHSKKLISHDIHSNLYNYKFTYSVEIVPVSKDSL 255
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLP K+ LG + P+ + +VTNS+ L+DP + +++ YWRS F ++ +QLV
Sbjct: 256 VCLPKKLTQQLGGISPICLVYRVTNSLHLIDPSRAQIAEINSTVYWRSPFNAICNPKQLV 315
Query: 317 EYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+V+D+E + + +K+VL+D V R S+ G +D RTHLGH+L P
Sbjct: 316 EYVVMDIEPIMDKDRKTFPGQGAISNKHVLSDIWVVRASELGVSDNTIHTRTHLGHVLKP 375
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GDY LGY+L +N ND DK +P+ +L+KK Y+ ++R R WKLK + E
Sbjct: 376 GDYVLGYNLEDSNINDGNFDKLDKNSVPDVVLVKKYYDRSERKRR---RVWKLKHMAQE- 431
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMASVTDGEDVPSVP 488
++ TD N++Y EFL DLEE+P+LR NI+++++ Q P + D E+VP +
Sbjct: 432 -ETALITD----NRDYNEFLDDLEEDPDLRQNINIFKDNTKQIPIDSGDDVD-ENVPRIT 485
Query: 489 LDELLADL 496
L E+L DL
Sbjct: 486 LAEMLDDL 493
>gi|449678782|ref|XP_004209161.1| PREDICTED: 60S ribosomal export protein NMD3-like [Hydra
magnipapillata]
Length = 488
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/494 (45%), Positives = 324/494 (65%), Gaps = 20/494 (4%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T ++LCC+CG P PN +N+C+ C+RS+VDI+EG+QK I+ C C+ Y PP +WI+
Sbjct: 11 TQQTILCCQCGTPTPPNPSNICINCIRSQVDISEGIQKQAILPFCKSCERYFHPPSSWIQ 70
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
QLES+ELL C+K+LK LN+ LV+A FIWTEPHSKRIKVKL +QKEVL IL+Q++V
Sbjct: 71 CQLESRELLALCLKKLKGLNKSHLVDAGFIWTEPHSKRIKVKLTIQKEVLGSTILQQTFV 130
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
V+Y+ Q MCD C R +A D W A VQ+RQ V+H++TF+YLEQLI+KH+ + ++ I Q
Sbjct: 131 VDYIVQSQMCDDCHRREAK-DFWQAVVQIRQKVSHKKTFYYLEQLIMKHNIHSNSLNIKQ 189
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
+ G+DF++ N+ HA + ++F+ V P R + ++L+SHD ++N FN K TFSVE++PIC
Sbjct: 190 VHDGLDFYYANKQHAKRMLDFLQTVVPCRFKTSERLISHDIQNNTFNSKSTFSVELAPIC 249
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
+ D+ICLP KVA SL N+ +VIC K+T+SI L+DPFT + L A YWR F + ++
Sbjct: 250 KNDIICLPKKVAKSLSNISQIVICTKITSSIHLVDPFTGKVVELLASAYWRDPFNAFTST 309
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
+QL E+ VLD E + SKY AD + + +D +D F RTHLGHLL+ GD
Sbjct: 310 KQLSEFTVLDTE---KDFETMNSKYCKADVYLMKNNDSSGSDGQFHCRTHLGHLLSAGDI 366
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDS 432
G+D ++N ND LD G +P+ + Y ++ +KRSK R+WKLK L E
Sbjct: 367 VAGFDFSTSNTNDSNLDLMNGDNIPDVL-----YGDR--KKRSKKRNWKLKELPKET--- 416
Query: 433 KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDEL 492
++E N +YEEFL DLEE+ E R +++YR++ S +D +D P + L+E+
Sbjct: 417 ---LEKEDNNDDYEEFLEDLEEDKEYRMGLNIYRDRS---KVSQSESDLDDAPQISLEEM 470
Query: 493 LADLDLKSDDGEGD 506
+ DL ++ E D
Sbjct: 471 MDDLQIEDHPMESD 484
>gi|145258982|ref|XP_001402234.1| 60S ribosomal export protein NMD3 [Aspergillus niger CBS 513.88]
gi|134074849|emb|CAK38963.1| unnamed protein product [Aspergillus niger]
gi|350631891|gb|EHA20260.1| hypothetical protein ASPNIDRAFT_214784 [Aspergillus niger ATCC
1015]
Length = 526
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/515 (40%), Positives = 321/515 (62%), Gaps = 32/515 (6%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI++G+Q+ ++ C +C+ +LQPP +
Sbjct: 18 QIAATILCCNCGAPIDGTTSAGALCQDCVKLTVDISQGIQREAVLHCCKDCERWLQPPTS 77
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W+ A LESKELL C+++L+ L++VR+++A FIWTEPHSKRIKVK+ +Q+E G I++Q
Sbjct: 78 WVSAALESKELLAHCLRKLRGLSKVRIIDASFIWTEPHSKRIKVKITIQQEAFQGTIVQQ 137
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
++ VEYV C C + + W +++QLRQ V H+RTF YLEQ+ILKH+A I
Sbjct: 138 TFEVEYVVASLQCPDCKK-SFTVNTWNSSIQLRQKVPHKRTFLYLEQIILKHNAHRDTIN 196
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + G+DF+F R+HA K VEF+ V P + + ++L+S D ++ +YK+TFS+E+
Sbjct: 197 IKEAKDGLDFYFAQRNHAEKMVEFLSSVVPTKVKKSQELISMDIHTSTKSYKFTFSIELI 256
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP K+A SLGN+ PL +C +V S+ LLDP TL+ + + YWRS F+SL
Sbjct: 257 PICKDDLVALPIKLARSLGNISPLALCYRVGTSVNLLDPNTLQTADVPTNTYWRSPFRSL 316
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+L E+I++D+E+V ++ LA+A VAR SD G ND + RTHLG +L+
Sbjct: 317 ADVTELTEFIIMDIELVGR----SNGRFYLAEATVARASDLGSNDQTYFTRTHLGGVLHV 372
Query: 370 GDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD LGY L N ND +E +P+ +L+KK Y K K++K R+W+LK
Sbjct: 373 GDSVLGYHLTGTNFNDPNFEAIEASGQYSSAIPDVVLVKKFYARK---KKNKNRNWRLKR 429
Query: 425 LDMEVDDS-----------KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS 473
+ +E ++ K ++ ++ +++E FLRD+EE+ ELR + LY+ ++ P
Sbjct: 430 MALEYEEEAAQQAAGNLNRKQEAERNRLEEDFEMFLRDVEEDQELRGTLDLYKARNRAPV 489
Query: 474 EMAS-----VTDGEDVPSVPLDELLADLD-LKSDD 502
E ++ ++VP + +DELL D D L DD
Sbjct: 490 EHGGMDMDEDSEDDEVPKINMDELLDDFDELNMDD 524
>gi|85105436|ref|XP_961964.1| 60S ribosomal export protein NMD3 [Neurospora crassa OR74A]
gi|28923552|gb|EAA32728.1| hypothetical protein NCU08663 [Neurospora crassa OR74A]
Length = 519
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/521 (42%), Positives = 325/521 (62%), Gaps = 34/521 (6%)
Query: 1 MAQDAGMFTVP-----QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVI 53
M DA M P +T ++LCC CG P+ +A +C C++S VDI++G+Q+
Sbjct: 1 MDLDAPMAMAPLMGSARTGATILCCNCGAPIDGTSSAGALCYDCIKSTVDISQGIQREAT 60
Query: 54 ISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKV 113
+ C +CD +L PP +W+ A ES+ELL+ C+K+L+NL +VR+ +A FIWTEPHS+R+KV
Sbjct: 61 LHFCKDCDRWLLPPASWVTAAPESRELLSLCLKKLRNLGKVRITDARFIWTEPHSRRVKV 120
Query: 114 KLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFY 173
++ VQ +V +G +++QS+ V YV C C++ + W AAVQ+RQ VTH+RTF +
Sbjct: 121 QVTVQDQVADGVLMQQSFEVTYVVASQQCKDCAK-SYTANVWRAAVQVRQKVTHKRTFLF 179
Query: 174 LEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDP 233
LEQLIL+H A I I + GIDF+F ++ A F+ F+ V PV ++ + L+S D
Sbjct: 180 LEQLILRHQAHRDTINIKEEKDGIDFYFAQKNQAEGFISFLKSVVPVLTKESRHLISADT 239
Query: 234 KSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRH 293
+ N +YKY +SVEI P+CR+DL+ LP K+A S+GN+ PLV+C ++ S+ LLDP TL+
Sbjct: 240 HTGNKSYKYNYSVEIVPVCRDDLVALPLKLAKSIGNISPLVLCHRIGTSVNLLDPNTLQT 299
Query: 294 CFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKN 353
+ AD YWR+ F L + LVE+IV+D+E S+ V G K++L++ QVAR SD G N
Sbjct: 300 AEVSADIYWRAPFHPLAGTPDLVEFIVMDIE--STGVRKG--KWLLSEVQVARASDLGVN 355
Query: 354 DTIFSIRTHLGHLLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEE 408
D ++ RTHLG L+ GD LGY L N N +E K G ++P+ +L+KK Y
Sbjct: 356 DNVYFTRTHLGQHLHAGDSVLGYMLEGTNFNSDALEAIESSKAYGSMIPDVVLVKKHYPN 415
Query: 409 KRLRKRSKPRSWKLKSLDMEVDDSK---GRTDQEKMNKEYEEFLRDLEENPELRFNISLY 465
+R ++ +WKLK M D+ + +DQ KM+ EYE FLRD+EE+ ELR ++LY
Sbjct: 416 RRRNRKR---NWKLKR--MAKDEGELLPKASDQAKMDAEYEMFLRDVEEDEELRAALALY 470
Query: 466 RN--KDYQPSEMASVTDG-------EDVPSVPLDELLADLD 497
+N K + ++ S+ D ED P + +DELL D +
Sbjct: 471 KNSLKTKREADAMSIADTDMMTEAEEDGPKISMDELLDDFE 511
>gi|242015181|ref|XP_002428252.1| Nonsense-mediated mRNA decay protein, putative [Pediculus humanus
corporis]
gi|212512813|gb|EEB15514.1| Nonsense-mediated mRNA decay protein, putative [Pediculus humanus
corporis]
Length = 506
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/506 (44%), Positives = 318/506 (62%), Gaps = 21/506 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
+LCC+CG + PN +NMCV CLR+ VDITEG+ K V I C C+ YLQPP WI
Sbjct: 13 AKILCCQCGTLITPNPSNMCVGCLRTRVDITEGIPKQVTIYFCKGCERYLQPPSEWIYCA 72
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LES+ELL FC+K+LK LNR++L++A F+WTEPHSKRIKVKL V EVL GAIL+Q +VVE
Sbjct: 73 LESRELLAFCLKKLKGLNRLKLIDAGFVWTEPHSKRIKVKLTVHGEVLGGAILQQVFVVE 132
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
Y+ MC C + +A D W VQ+RQ +++TFFYLEQLILKH A + I +
Sbjct: 133 YIVGHQMCSDCHKTEAK-DYWRCLVQVRQRCENKKTFFYLEQLILKHKAHENTLGIKPVH 191
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
+G+DFF+ +HA K V+F+ V P RS+H K+L+SHD SN +NYKYT+SVEI P+ ++
Sbjct: 192 EGLDFFYSTEAHARKMVDFITNVLPCRSQHSKKLISHDIHSNTYNYKYTWSVEIVPLSKD 251
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
++CL K+ LG + PL I ++TNS+ L+ P + + + A +WR+ F + + Q
Sbjct: 252 GVVCLSKKLTQQLGGINPLCIVARITNSVHLIHPASSQIAEVSASVFWRTPFSIICSPPQ 311
Query: 315 LVEYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
++E++V++++V+++ K++LAD V + S+ G N+ RTHLG +L
Sbjct: 312 MIEFVVIEIDVINANEKQRFKGQGAISHKHLLADVWVVKASELGINENTIHTRTHLGAIL 371
Query: 368 NPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
PGD LGY+L N ND DK K LP+ ILIKK Y E+ RKR R+WKLK L+
Sbjct: 372 KPGDSVLGYNLADFNVNDDNFDKLKENDLPDVILIKKYYGERSARKRL--RNWKLKHLNE 429
Query: 428 EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED--VP 485
+ T+ K + E+EEFL DLEE+P R NI++Y+ + + + + + +D P
Sbjct: 430 DA------TNFNKTSDEFEEFLEDLEEDPNYRQNINIYKVEKSETTIPVTYDEMDDPAFP 483
Query: 486 SVPLDELLADLDLKSDDGEGDDSMRE 511
+ L E+L DL + D GD M E
Sbjct: 484 RITLAEMLDDLQI---DDNGDIEMNE 506
>gi|195347866|ref|XP_002040472.1| GM18910 [Drosophila sechellia]
gi|194121900|gb|EDW43943.1| GM18910 [Drosophila sechellia]
Length = 517
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/496 (43%), Positives = 308/496 (62%), Gaps = 25/496 (5%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+ + PN ANMCV CLR+ VDITE + K ++ C C+ YLQPP WI+A LE
Sbjct: 25 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQAALE 84
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E+ G +L+Q +VVE+
Sbjct: 85 SRELLAICLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEITGGTVLQQVFVVEFT 144
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MC+ C R +A D W VQ+RQ +++TF+YLEQLILKH A + I G
Sbjct: 145 ----MCNDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEHGG 199
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ N +HA + V+F+ + P + K+L+SHD SNN+NYKY +SVEI+P+ ++
Sbjct: 200 LDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIAPVSKDSA 259
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K+ LGNL P+V+ +V++SI L+DP T + L + Y+R+ F+++ +QLV
Sbjct: 260 VCLSKKLRHQLGNLSPVVLVNRVSSSIHLIDPLTAQIAELTSQVYFRTPFEAICNPKQLV 319
Query: 317 EYIVLDVEVV---SSEVNVGGS----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+V+D++V+ + G K+ L D V R S+ G ND R+HLGHLL
Sbjct: 320 EYVVMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNPIHTRSHLGHLLKV 379
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD +GY+ AN ND+E DK +P+ IL++K Y+ + R R WK+K L E
Sbjct: 380 GDSVMGYNTGEANINDLEFDKLSTDEIPDVILVRKHYDRQ---TRLSQRVWKIKHLAAEA 436
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMASVTDGEDVPSVP 488
D + + D Y EFL DLEEN ++R +++YR+ + P E + G DVP +
Sbjct: 437 TDERSKYD-------YHEFLDDLEENEDIRGQVNIYRDTNKTIPIEAQAA--GGDVPQIT 487
Query: 489 LDELLADLDLKSDDGE 504
L+E+L D+ L+ D E
Sbjct: 488 LEEMLEDMTLECADDE 503
>gi|403215841|emb|CCK70339.1| hypothetical protein KNAG_0E00710 [Kazachstania naganishii CBS
8797]
Length = 522
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/515 (42%), Positives = 317/515 (61%), Gaps = 27/515 (5%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q V +VLCC CG P+ + MC C++ VDIT+G+ + IS C C+ +LQPP W
Sbjct: 15 QHVSTVLCCNCGTPIDGSSGMVMCYDCIKMTVDITQGIPREANISFCRNCERFLQPPGQW 74
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
IKA LES+ELL C++RLK L +VRL++A FIWTEPHS+RI++KL VQ E + I++Q+
Sbjct: 75 IKADLESRELLAICLRRLKGLTKVRLIDASFIWTEPHSRRIRLKLTVQGEAMANTIIQQT 134
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEYV C C++ W A VQ+RQ V H+RTF YLEQLILKH+A + I
Sbjct: 135 FEVEYVVLAMQCPDCAK-SYTTHTWRAVVQIRQKVAHKRTFLYLEQLILKHNAHVDTVSI 193
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V PV+ + ++L+S D +S + YK+++SVEI P
Sbjct: 194 SESKDGLDFFYAQKNHAVKMIDFLSAVVPVKYKKSEELISQDTQSGSSTYKFSYSVEIVP 253
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
ICR+DL+ LP K+A S+GN+ V+C KV+N + LDP TL+ L YWR F SL
Sbjct: 254 ICRDDLVVLPKKLAKSMGNISQFVLCSKVSNYLQFLDPSTLQTAELSPSVYWREPFYSLA 313
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QL E+IVLDV+ + + K VLAD +AR +D G ND + I++HLG + + G
Sbjct: 314 DVSQLTEFIVLDVDPTA----ISRGKLVLADITIARAADLGVNDQCYYIKSHLGAICHAG 369
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME-- 428
D +GY + ++N N+ D G +P+ +L+KK Y RK K R WKLK + E
Sbjct: 370 DTVMGYFVANSNYNNQLYDALNGDYIPDVVLVKKLYR----RKNRKNRKWKLKRMAREHK 425
Query: 429 ----VDDSKGRTDQEKM---NKEYEEFLRDLEENPELRFNISLYRNKDYQPSE------- 474
+D R +++M K+YE FL++LEE+ ELR NI+LY+N+ + P+
Sbjct: 426 DIDAAEDYTSRAQKQEMERAEKDYELFLQELEEDDELRQNINLYKNRQFAPTNPNPNGVE 485
Query: 475 MASVTDGEDVPSVPLDELLADLD-LKSDDGEGDDS 508
A + D P + +DELL +LD + +D E D+
Sbjct: 486 EAEEEEDADAPEINIDELLDELDEMTLEDSEMRDA 520
>gi|195059016|ref|XP_001995545.1| GH17705 [Drosophila grimshawi]
gi|193896331|gb|EDV95197.1| GH17705 [Drosophila grimshawi]
Length = 525
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/505 (41%), Positives = 309/505 (61%), Gaps = 31/505 (6%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+ + PN ANMCV CLR+ VDITE + K ++ C C+ YLQPP W++A LE
Sbjct: 25 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWVQASLE 84
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E+ G +L+Q ++VE+
Sbjct: 85 SRELLAVCLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEISGGTVLQQVFIVEFT 144
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q+ MCD C R +A D W VQ+RQ +++TF+YLEQLILK+ A + I G
Sbjct: 145 VQNQMCDDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKYKAHENTLGIKPEHGG 203
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ + +HA + V+F+ + P + K+L+SHD SNN+NYKY++SVEI+PI ++
Sbjct: 204 LDFYYVSENHARRMVDFLQTMVPAKVTTSKRLISHDIHSNNYNYKYSWSVEIAPISKDSA 263
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K+ LGN+ P+ + +V++SI L+DP T + + Y+R+ F+++ +QLV
Sbjct: 264 VCLTKKLRQQLGNISPVCLVNRVSSSIHLIDPMTAQIAEITTQLYFRAPFEAICNPKQLV 323
Query: 317 EYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+V+D++++ + K+ L D V R S+ G ND R+HLGHLL
Sbjct: 324 EYVVMDIDIIHDKDRKSYPGQGTVSFKHALCDIWVVRASELGINDNPIHTRSHLGHLLKV 383
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD +GY+ AN ND E DK ++P+ +L++K Y+ + R R WK+K L E
Sbjct: 384 GDSVMGYNTGEANINDAEFDKLSPELIPDVVLVRKHYDRQ---ARLNQRLWKIKHLADEA 440
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK------DYQPSEMASVTDGED 483
D + + D Y EFL D+EEN E+R I++YR+ D QP DG D
Sbjct: 441 TDERSKYD-------YHEFLDDIEENVEIRGQINVYRDSKKTIPVDVQP-------DGAD 486
Query: 484 VPSVPLDELLADLDLKSDDGEGDDS 508
+P + L E+L D+ L+ D E D+
Sbjct: 487 LPQITLAEMLEDMTLECADDEMGDA 511
>gi|367023072|ref|XP_003660821.1| hypothetical protein MYCTH_2299553 [Myceliophthora thermophila ATCC
42464]
gi|347008088|gb|AEO55576.1| hypothetical protein MYCTH_2299553 [Myceliophthora thermophila ATCC
42464]
Length = 524
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/525 (41%), Positives = 319/525 (60%), Gaps = 31/525 (5%)
Query: 4 DAGMFTVPQ-----TVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISH 56
D GM ++ Q T ++LCC CG P+ +A +C C++S VDI++G+Q+ +
Sbjct: 6 DMGMVSMQQMGTARTGATILCCNCGAPIDGTASAGALCYDCIKSTVDISQGIQREATLHV 65
Query: 57 CPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLK 116
C +CD +L PP +W+ A ES+ELL+ C+KRL+NL +VR+V+A F+WTEPHS+RIKVK+
Sbjct: 66 CRDCDRWLMPPNSWVAAAPESRELLSICLKRLRNLGKVRIVDARFVWTEPHSRRIKVKIT 125
Query: 117 VQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQ 176
VQ V +G +++QS+ V Y+ + C C++ + W AAVQ+RQ V+H+RTF LEQ
Sbjct: 126 VQDAVADGVMMQQSFEVVYIVANQQCRECAK-SYTANVWRAAVQVRQKVSHKRTFLLLEQ 184
Query: 177 LILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSN 236
LILKH A I I + GIDF+F R+ A FV F+ V PV + + L+S D +
Sbjct: 185 LILKHQAHKDTINIKEEKDGIDFYFAQRNQAEAFVHFLKSVVPVHIKESRHLISADTHTG 244
Query: 237 NFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFL 296
N +YK+ FS E+ P+CR+DL+ LP K+A SLGN+ PLV+C ++ S+ LLDP TL+ L
Sbjct: 245 NKSYKFNFSAELVPVCRDDLVALPLKLAKSLGNIAPLVLCYRIGTSVNLLDPNTLQTAEL 304
Query: 297 DADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTI 356
+D YWR+ F+ L + ++VE+IV+D+E K+VL +A VAR SD G ND
Sbjct: 305 SSDAYWRAPFQPLAGATEMVEFIVMDIEPTGQR----KGKWVLGEATVARASDLGVNDNT 360
Query: 357 FSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRL 411
+ RTHLG LL PGD +GY L N N LD + G +P+ +L+KK Y +R
Sbjct: 361 YFARTHLGSLLKPGDSVMGYMLTGTNFNSEALDAIENSRAYGSTIPDVVLVKKHYPNRRK 420
Query: 412 RKRSKPRSWKLKSLDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRNK-- 468
+R +WKLK + + D + DQ ++ EYE+FLRD+EE+ ELR ++LY+N
Sbjct: 421 NRRR---NWKLKRMAKDEGDLLPKAADQARLEAEYEQFLRDVEEDEELRQALALYKNTKK 477
Query: 469 -DYQPSEMASVTDGEDV-------PSVPLDELLADLDLKSDDGEG 505
Q ++ S+ + E P + +DELL D D + EG
Sbjct: 478 KKKQDADAMSIAETEMTMDDDDDGPKISMDELLDDFDELEINDEG 522
>gi|365984817|ref|XP_003669241.1| hypothetical protein NDAI_0C03380 [Naumovozyma dairenensis CBS 421]
gi|343768009|emb|CCD23998.1| hypothetical protein NDAI_0C03380 [Naumovozyma dairenensis CBS 421]
Length = 538
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/501 (41%), Positives = 308/501 (61%), Gaps = 26/501 (5%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG P+ MC C++ VDITEG+ + IS C C+ +LQPP WI+
Sbjct: 28 VATVLCCNCGTPIDGSTGLVMCYDCIKMTVDITEGIPREANISFCRNCERFLQPPGQWIR 87
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI++KL VQ E ++ I++Q++
Sbjct: 88 ADLESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMSNTIIQQTFE 147
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C+R + W A VQ+RQ V H+RTF YLEQLIL+H+A I I++
Sbjct: 148 VEYVVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLYLEQLILRHNAHVDTISISE 206
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HAVK ++F+ V P++S+ ++L+S D + + YK+++SVEI PIC
Sbjct: 207 AKDGLDFFYSQKNHAVKMIDFLNSVVPIKSKKSEELISQDTHTGSSTYKFSYSVEIVPIC 266
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A LGN+ V+C K++N++ LDP TL+ L YWRS F +L
Sbjct: 267 RDDLVVLPKKLAKHLGNISQFVLCSKISNTVQFLDPTTLQTADLSPSLYWRSPFSALADV 326
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QL ++IVLDV+ + K +LAD +AR +D G ND ++ R+HLG +L+ GD
Sbjct: 327 SQLTDFIVLDVD----PTGISKGKRILADITIARTADLGINDQVYYARSHLGAILHAGDT 382
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDD- 431
GY + ++N N D +P+ +L+KK Y+ RK K R+WKLK + E D
Sbjct: 383 VAGYFIANSNYNSELFDGLNIDYVPDVVLVKKLYQ----RKTKKNRNWKLKRMAKEHKDI 438
Query: 432 -------SKG-RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT---- 479
SK + D E+ K+YE FL++LEE+ E+R I+LY+N + + +
Sbjct: 439 DAAQDYSSKAQKQDMERAEKDYELFLQELEEDEEMRQTINLYKNNEAAAAAQIAAAANGM 498
Query: 480 ---DGEDVPSVPLDELLADLD 497
+ D P + +DELL +LD
Sbjct: 499 EEDEDPDAPQIDIDELLDELD 519
>gi|342879412|gb|EGU80660.1| hypothetical protein FOXB_08801 [Fusarium oxysporum Fo5176]
Length = 517
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/496 (41%), Positives = 319/496 (64%), Gaps = 18/496 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ A++ +C C++ VDI++G+Q+ ++ C +CD +L PP +
Sbjct: 19 QGSATILCCNCGAPIDGTASSGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLMPPNS 78
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A ES+ELL C+K+L+ LN+VR+V+A FIWTEPHS+R+KVK+ +Q V +G +L+Q
Sbjct: 79 WIVAAPESRELLAMCLKKLRGLNKVRIVDASFIWTEPHSRRVKVKITIQDSVQDGMLLQQ 138
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ V YV C C++ + W AAVQ+RQ V H+RTF +LEQLI+KH A +
Sbjct: 139 SFEVVYVVAYQQCPECAK-SYTANVWRAAVQVRQKVLHKRTFLFLEQLIMKHGAHKDTLN 197
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + GIDFFF ++ A KF++F+ V PV+ + ++L+SHD ++ +YK+T+S E+
Sbjct: 198 IREAKDGIDFFFAQKNQAEKFIDFLNSVVPVKVKASQELISHDTHTSKSSYKFTYSAELV 257
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP K+A GN+ PL++C K+ S+ LLDP TL+ C + + YWR+ F SL
Sbjct: 258 PICKDDLVALPIKMAKQNGNISPLLLCHKIGTSVYLLDPQTLQTCDISSPIYWRAPFLSL 317
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ +LVE+IV+D++ +++ K+ LA+A VAR SD G ND + RTHLG LL P
Sbjct: 318 TDTHELVEFIVMDIDRTATQ----KGKWTLAEATVARASDLGSNDRTYFTRTHLGRLLQP 373
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD A+GY + N+ E +K + +P+ +L+KK Y +R ++ +W+LK
Sbjct: 374 GDSAMGYLMAGTVFNNTEYEKIESSNTYSSRIPDVVLVKKHYPRRRKNRKR---NWQLKR 430
Query: 425 LDM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
+D E + + DQE++++EYE+FLRD+EE+ ELR ++LY+ K EM+ ED
Sbjct: 431 MDKDEGELLPKKADQERLDQEYEQFLRDVEEDEELRATLALYKAKKRAEEEMSVAETEED 490
Query: 484 --VPSVPLDELLADLD 497
P V ++ELL D D
Sbjct: 491 DEAPHVDMNELLDDFD 506
>gi|407917478|gb|EKG10785.1| NMD3 domain-containing protein [Macrophomina phaseolina MS6]
Length = 516
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/507 (41%), Positives = 323/507 (63%), Gaps = 23/507 (4%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI+EG+Q+ ++ C +CD ++ PP
Sbjct: 17 QNAATILCCNCGAPIDGTSSAGALCYDCIKLTVDISEGVQREAVLHSCRDCDRWMSPPNQ 76
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W+ AQ ES+ELL C+++L+ LN+VR+++A FIWTEPHS+RIKVK+ +Q+E IL+Q
Sbjct: 77 WLVAQPESRELLALCLRKLRGLNKVRIIDASFIWTEPHSRRIKVKITIQQEAFQNTILQQ 136
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ VEYV + C C++ + + W A+VQ+RQ VTH+RTF YLEQLILKH A I
Sbjct: 137 SFEVEYVLANQQCPDCAKSYTH-NTWRASVQVRQKVTHKRTFLYLEQLILKHSAHKDTIN 195
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + +GIDFFF R+ A KFV+F+ V PV + ++L+S D ++ +YK+T+S+EI
Sbjct: 196 IKETHEGIDFFFAARNQAEKFVDFLKSVVPVFVKKSQELISMDVHTSVKSYKFTYSIEIV 255
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP K+A LGN+ P+ IC ++ ++ +LDP TL+ + + YWRS F L
Sbjct: 256 PICKDDLVVLPIKMAKQLGNIPPMTICNRIGTAVQVLDPQTLQTADISPEVYWRSPFTPL 315
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+LVE+IVLD+E + +YVLA+A VAR SD G ND F RTH+G LLN
Sbjct: 316 ADVTELVEFIVLDIEPLGP----TKGRYVLAEATVARASDMGSNDQTFYTRTHMGALLNV 371
Query: 370 GDYALGYDLYSAN-NND----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD +GY L N NND +E K +P+ +L+KK Y RK+ R+WK+K
Sbjct: 372 GDSVMGYHLLGTNFNNDLFDELENSKQYSSTIPDVLLVKKHYA----RKKRNKRNWKVKR 427
Query: 425 LDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDY-QPSEMASVTDGE 482
+ E + R DQE++ +++E FLRD+EE+ + R I+LY+++ +P++ + + +
Sbjct: 428 MAKEESEMLPRKQDQERLERDFEMFLRDVEEDEDYRAGIALYKSQHAPKPTDAEEMEEDD 487
Query: 483 DVP----SVPLDELLADL-DLKSDDGE 504
D +P+D+LL ++ DL +DG+
Sbjct: 488 DEEDEGLQIPMDQLLEEMEDLNMEDGD 514
>gi|295661717|ref|XP_002791413.1| 60S ribosomal export protein NMD3 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279970|gb|EEH35536.1| nonsense-mediated mRNA decay protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 527
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/521 (42%), Positives = 317/521 (60%), Gaps = 35/521 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPM-APNAAN-MCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ NAA +C C++ VDI++G+Q+ + C +C+ +LQ
Sbjct: 16 FHPQQQTATILCCNCGAPIDGTNAAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A +ES+ELL C+++L+ L +VR+++A FIWTEPHSKRIKVK+ VQ+E G
Sbjct: 76 PPNQWISAAIESRELLALCLRKLRGLGKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
I++Q++ VEYV C C++ P+ W A+VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 136 IMQQTFEVEYVVASQQCSECAK-SYTPNTWRASVQVRQKVPHKRTFLYLEQLILKHSAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I + G+DFFF R+HA K V+F+ VAPVR + ++L+S D ++ ++K TFS
Sbjct: 195 DTINIKEAKDGLDFFFSQRNHAEKLVDFLSSVAPVRVKKSQELISVDVHTSTKSFKITFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
V + PIC++DL+ LP +A SL N+ PL +C +V SI LLDP TLR + + YWR+
Sbjct: 255 VYLIPICKDDLVALPLSLAKSLSNIHPLTLCYRVGTSIGLLDPATLRTADIPSPVYWRTP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
FK+L R+LVE+IV+D+E V + LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FKNLADVRELVEFIVMDIEPAGKSVG----HFHLAEATVARASDLGSNDTTYFTRTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L GD LGY L +N ND +E +P+ +L+KK Y RK+ R+W
Sbjct: 371 VLRVGDSVLGYLLTGSNFNDSNFEALERSGTYNSTIPDVVLVKKHYP----RKKKAKRNW 426
Query: 421 KLKSLDME---VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS---- 473
+LK L+ E S + +++ + +++E FLRD+EE+ ELR +SLY+ K Q
Sbjct: 427 RLKRLNREEEAATASARKQEKDLLEEDFEMFLRDVEEDTELRSTLSLYKAKRAQAEADRM 486
Query: 474 ------EMASV-----TDGEDVPSVPLDELLADL-DLKSDD 502
M+ V D + VP + +DELL D DL +D
Sbjct: 487 EGIERDAMSVVEEEDDDDEDGVPKISMDELLDDFEDLNVED 527
>gi|157133750|ref|XP_001662996.1| nonsense-mediated mrna decay protein [Aedes aegypti]
gi|108881501|gb|EAT45726.1| AAEL003039-PA [Aedes aegypti]
Length = 510
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/501 (42%), Positives = 319/501 (63%), Gaps = 22/501 (4%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T +LCC+CG P+ PN +NMCVACLR+ VDIT + K ++ C C+ YL PP W++
Sbjct: 18 TKNKILCCECGTPIEPNPSNMCVACLRTHVDITANIPKQAVVFFCRNCERYLNPPSEWVQ 77
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
LESKELL+ C+KRLK L V+LV+A F+WTEPHSKRIKVKL V EV++G +L+Q +V
Sbjct: 78 CSLESKELLSVCLKRLKGLKEVKLVDAGFVWTEPHSKRIKVKLTVHGEVMDGVVLQQVFV 137
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT- 191
VE+ + MCD C R +A D W VQ+RQ +++T FYLEQ+ILKH A + I
Sbjct: 138 VEFTVNNQMCDDCHRTEAK-DFWRCLVQVRQKSINKKTLFYLEQMILKHKAHENTLGIKP 196
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
G+DF++ +HA K V+FV V PV+ + K+L+SHD SN++NYKY++++++ PI
Sbjct: 197 SPSGGLDFYYATDAHARKMVDFVQAVLPVKVTNSKKLISHDIHSNSYNYKYSYALDVVPI 256
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
+ L+CL K+ LG++ P+ + KV N++ L+DP T + + +W++ F+++
Sbjct: 257 SKGSLVCLNKKLQQQLGHISPICLVTKVANAVHLMDPRTAQLAEVQNMAFWKNPFEAICN 316
Query: 312 SRQLVEYIVLDVEVV--SSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLG 364
+Q++E+IV+D+E+V + + N G ++VLAD V + S+ G N+ R+HLG
Sbjct: 317 PKQMIEFIVMDIEIVRDNEKKNFPGQGPVSFRHVLADVWVVKASELGINENTIHTRSHLG 376
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
HLL PGD +GYDL AN N+ + +K K +P+ +LIKK Y++ R + R+WKLK
Sbjct: 377 HLLKPGDSVMGYDLQDANINNADFEKLKQDSVPDLLLIKKYYDKS---ARKQTRNWKLKH 433
Query: 425 LDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYR-NKDYQPSEMASVTDGED 483
L +D TD E +Y EFL DLEE+P+LR N+++++ N P ++ + D
Sbjct: 434 L---TEDVALDTDIE---NDYNEFLEDLEEDPDLRQNVNIFKDNSKIIPVDVNDMPDPS- 486
Query: 484 VPSVPLDELLADLDLKSDDGE 504
VP + L+E+L DL L DD E
Sbjct: 487 VPRITLEEMLDDLVL--DDVE 505
>gi|324508962|gb|ADY43779.1| 60S ribosomal export protein NMD3 [Ascaris suum]
Length = 504
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/498 (44%), Positives = 328/498 (65%), Gaps = 16/498 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
++ G ++CC+CG + PNAANMCVAC+RS+VDITEG+ K ++ C C +L PP W+
Sbjct: 9 ESPGRIICCECGASIEPNAANMCVACIRSKVDITEGIPKQCQLTSCKFCGRFLMPPNGWM 68
Query: 72 KAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
AQ ESKELL+ +K+LK + +VRL +A FIWTEPHSKRIKVKL +QKE+L+GAIL+Q+
Sbjct: 69 HAQPESKELLSLALKKLKPAMTKVRLTDASFIWTEPHSKRIKVKLTIQKEILSGAILQQT 128
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+VVE+V Q+ MC+ C RV+A D W A VQ+RQ ++T FYLEQL+LKH A +
Sbjct: 129 FVVEFVIQNQMCEDCRRVEAK-DFWRACVQVRQRCDFKKTLFYLEQLVLKHAAHVNTTGV 187
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ GIDFF+ + A K V+F+ V P + R+ ++LV+HDP++N ++YK+TF V+I P
Sbjct: 188 KPVASGIDFFYAKQQDARKLVDFLLSVLPCKYRYAQELVTHDPRNNTYDYKHTFCVDIVP 247
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++ +ICLP ++A SLGN+ LV+C++V+N I L+DP TL+ + A QYWR F++L
Sbjct: 248 ICKDSVICLPKRIAQSLGNMSQLVVCLRVSNVITLIDPSTLQMADVTASQYWRDPFEALC 307
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGG-----SKYVLADAQVARVSDFGKNDT-IFSIRTHLG 364
S+QL E+ VLDVE + G +K++LAD V R + G+N RTHLG
Sbjct: 308 QSKQLTEFYVLDVEEIDDLKRSAGHGHVSTKHLLADVWVVRSNQVGENGAQTVCCRTHLG 367
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
HLL PGD LG+D+ ++N N LD+ K + + IL++K + ++ LR+R R WKLK
Sbjct: 368 HLLKPGDLVLGFDILNSNVNSRVLDEMKADKVADVILVRKVF-DRALRQRR--RIWKLKR 424
Query: 425 LDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDV 484
L + + + + E+E F+ DLEE+ ++R +++Y+ ++ P + + D+
Sbjct: 425 L---LANGSIVNETASVENEFEAFMEDLEEDEQMREKVNIYKARERVPP-IDEDDNSVDL 480
Query: 485 PSVP-LDELLADLDLKSD 501
P P L E+L DLD+ +D
Sbjct: 481 PPGPSLAEMLDDLDINAD 498
>gi|322701682|gb|EFY93431.1| Nonsense-mediated mRNA decay protein 3, putative [Metarhizium
acridum CQMa 102]
Length = 514
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/498 (41%), Positives = 317/498 (63%), Gaps = 20/498 (4%)
Query: 12 QTVGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
QT ++LCC CG P+ A +C C++ VDI++G+Q+ ++ C +CD +L PP +
Sbjct: 18 QTAATILCCNCGAPIDGTTATGALCFNCVKLTVDISQGIQREATLNFCRDCDRWLLPPTS 77
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A ES+ELL C+K+L+ L++VR+V+A F+WTEPHS+RIKVKL +Q V +G +L+Q
Sbjct: 78 WIVAMPESRELLALCLKKLRGLHKVRIVDASFVWTEPHSRRIKVKLTIQDAVQDGVLLQQ 137
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ V YV C C++ + W A VQ+RQ V H+RTF +LEQL++KH+A +
Sbjct: 138 SFEVVYVVATQQCPECAK-SYTANVWRACVQVRQKVLHKRTFLFLEQLMMKHNAHRETLN 196
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + GIDFFF ++ A KF++F+ V PV + ++L+S D ++ +YK+++S EI
Sbjct: 197 IKEAKDGIDFFFSQKNQAEKFIDFLNSVVPVTVKASQELISQDVHTSKKSYKFSYSAEIV 256
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PICR+DL+ +P K+A GN+ PLV+C K+ S+ L+DP TL+ + + YWR+ F+SL
Sbjct: 257 PICRDDLVAMPIKLAKQSGNISPLVLCHKIGTSVYLMDPQTLQTADIASPIYWRAPFRSL 316
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ +LVE+I++D+E N K+VL++A VAR SD G ND + RTHLG+LL P
Sbjct: 317 ADAHELVEFIIMDIE----PTNTRRGKWVLSEATVARASDLGVNDKTYFTRTHLGNLLQP 372
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD A+GY L N+ E + + +P+ +L+KK Y +R +R +WKL+
Sbjct: 373 GDSAMGYLLTGTMFNNAEYEAIEESNTYSSTIPDVVLVKKYYPRRRKNRRR---NWKLRR 429
Query: 425 LDM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
+D E + + DQ++M++EYE+FLRD+EE+ ELR ++LY+N+ EM+ ED
Sbjct: 430 MDKDEGELLPKKADQDRMDREYEQFLRDVEEDEELRAAMALYKNEKRAEEEMSVAETEED 489
Query: 484 ----VPSVPLDELLADLD 497
VP V +DELL D D
Sbjct: 490 EDDGVPQVNMDELLDDFD 507
>gi|94468868|gb|ABF18283.1| NMD protein [Aedes aegypti]
Length = 510
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/499 (42%), Positives = 318/499 (63%), Gaps = 22/499 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
+LCC+CG P+ PN +NMCVACLR+ VDIT + K ++ C C+ YL PP W++
Sbjct: 20 NKILCCECGTPIEPNPSNMCVACLRTHVDITANIPKQAVVFFCRNCERYLNPPSEWVQCS 79
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LESKELL+ C+KRLK L V+LV+A F+WTEPHSKRIKVKL V EV++G +L+Q +VVE
Sbjct: 80 LESKELLSVCLKRLKGLKEVKLVDAGFVWTEPHSKRIKVKLTVHGEVMDGVVLQQVFVVE 139
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT-QM 193
+ + MCD C R +A D W VQ+RQ +++T FYLEQ+ILKH A + I
Sbjct: 140 FTVNNQMCDDCHRTEAK-DFWRCLVQVRQKSINKKTLFYLEQMILKHKAHENTLGIKPSP 198
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ +HA K V+FV V PV+ + K+L+SHD SN++NYKY++++++ PI +
Sbjct: 199 SGGLDFYYATDAHARKMVDFVQAVLPVKVTNSKKLISHDIHSNSYNYKYSYALDVVPISK 258
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
L+CL K+ LG++ P+ + KV N++ L+DP T + + +W++ F+++ +
Sbjct: 259 GSLVCLNKKLQQQLGHISPICLVTKVANAVHLMDPRTAQLAEVQNMAFWKNPFEAICNPK 318
Query: 314 QLVEYIVLDVEVV--SSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
Q++E+IV+D+E+V + + N G ++VLAD V + S+ G N+ R+HLGHL
Sbjct: 319 QMIEFIVMDIEIVRDNEKKNFPGQGPVSFRHVLADVWVVKASELGINENTIHTRSHLGHL 378
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
L PGD +GYDL AN N+ + +K K +P+ +LIKK Y++ R + R+WKLK L
Sbjct: 379 LKPGDSVMGYDLQDANINNADFEKLKQDSVPDLLLIKKYYDKS---ARKQTRNWKLKHL- 434
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYR-NKDYQPSEMASVTDGEDVP 485
+D TD E +Y EFL DLEE+P+LR N+++++ N P ++ + D VP
Sbjct: 435 --TEDVALDTDIE---NDYNEFLEDLEEDPDLRQNVNIFKDNSKIIPVDVNDMPDPS-VP 488
Query: 486 SVPLDELLADLDLKSDDGE 504
+ L+E+L DL L DD E
Sbjct: 489 RITLEEMLDDLVL--DDVE 505
>gi|225682064|gb|EEH20348.1| nonsense-mediated mRNA decay protein [Paracoccidioides brasiliensis
Pb03]
Length = 526
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 316/520 (60%), Gaps = 34/520 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPM-APNAAN-MCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ NAA +C C++ VDI++G+Q+ + C +C+ +LQ
Sbjct: 16 FHPQQQTATILCCNCGAPVDGTNAAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A +ES+ELL C+++L+ L +VR+++A FIWTEPHSKRIKVK+ VQ+E G
Sbjct: 76 PPNQWISAAIESRELLALCLRKLRGLGKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
I++Q++ VEYV C C++ P+ W A VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 136 IMQQTFEVEYVVASQQCSECAK-SYTPNTWRALVQVRQKVPHKRTFLYLEQLILKHSAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I + G+DFFF R+HA K V+F+ VAPVR + ++L+S D ++ +YK TFS
Sbjct: 195 DTINIKEAKDGLDFFFSQRNHAEKLVDFLSSVAPVRVKKSQELISVDVHTSTKSYKITFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
V + PIC++DL+ LP +A SL N+ PL +C +V SI LLDP TLR + + YWR+
Sbjct: 255 VYLIPICKDDLVALPLSLAKSLSNIHPLTLCYRVGTSIGLLDPATLRTADIPSPVYWRTP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
FK+L R+LVE+IV+D+E V + LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FKNLADVRELVEFIVMDIEPAGKSVG----HFHLAEATVARASDLGSNDTTYFTRTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L GD +GY L +N ND +E +P+ +L+KK Y RK+ R+W
Sbjct: 371 VLRVGDSVMGYLLTGSNFNDSNFEALERSGTYSSTIPDVVLVKKHYP----RKKKAKRNW 426
Query: 421 KLKSLDME---VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS---- 473
+LK L+ E S + +++ + +++E FLRD+EE+ ELR ++LY+ K Q
Sbjct: 427 RLKRLNREEEAATASARKQEKDLLEEDFEMFLRDVEEDAELRSTLALYKAKRVQAEADRM 486
Query: 474 ------EMASV----TDGEDVPSVPLDELLADL-DLKSDD 502
M+ V D + VP + +DELL D DL +D
Sbjct: 487 EGIERDAMSVVEEEEDDEDGVPKISMDELLDDFEDLNVED 526
>gi|226289241|gb|EEH44753.1| nonsense-mediated mRNA decay protein [Paracoccidioides brasiliensis
Pb18]
Length = 526
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/520 (42%), Positives = 315/520 (60%), Gaps = 34/520 (6%)
Query: 8 FTVPQTVGSVLCCKCGIPM-APNAAN-MCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
F Q ++LCC CG P+ NAA +C C++ VDI++G+Q+ + C +C+ +LQ
Sbjct: 16 FHPQQQTATILCCNCGAPVDGTNAAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQ 75
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP WI A +ES+ELL C+++L+ L +VR+++A FIWTEPHSKRIKVK+ VQ+E G
Sbjct: 76 PPNQWISAAIESRELLALCLRKLRGLGKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGT 135
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
I++Q++ VEYV C C++ P+ W A VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 136 IMQQTFEVEYVVASQQCSECAK-SYTPNTWRALVQVRQKVPHKRTFLYLEQLILKHSAHK 194
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I I + G+DFFF R+HA K V+F+ VAPVR + ++L+S D ++ +YK TFS
Sbjct: 195 DTINIKEAKDGLDFFFSQRNHAEKLVDFLSSVAPVRVKKSQELISVDVHTSTKSYKITFS 254
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
V + PIC++DL+ LP +A SL N+ PL +C +V SI LLDP TLR + + YWR+
Sbjct: 255 VYLIPICKDDLVALPLSLAKSLSNIHPLTLCYRVGTSIGLLDPATLRTADIPSPVYWRTP 314
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
FK+L R+LVE+IV+D+E V + LA+A VAR SD G NDT + RTHLG
Sbjct: 315 FKNLADVRELVEFIVMDIEPAGKSVG----HFHLAEATVARASDLGSNDTTYFTRTHLGG 370
Query: 366 LLNPGDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L GD +GY L +N ND +E +P+ +L+KK Y RK+ R+W
Sbjct: 371 VLRVGDSVMGYLLTGSNFNDSNFEALERSGTYSSTIPDVVLVKKHYP----RKKKAKRNW 426
Query: 421 KLKSLDME---VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ--PSEM 475
+LK L+ E S + +++ + +++E FLRD+EE+ ELR ++LY+ K Q M
Sbjct: 427 RLKRLNREEEAATASARKQEKDLLEEDFEMFLRDVEEDAELRSTLALYKAKRVQVEADRM 486
Query: 476 ASV------------TDGEDVPSVPLDELLADL-DLKSDD 502
+ D + VP + +DELL D DL +D
Sbjct: 487 EGIERDAMSVVEEEEDDEDGVPKISMDELLDDFEDLNVED 526
>gi|340373689|ref|XP_003385373.1| PREDICTED: 60S ribosomal export protein NMD3-like [Amphimedon
queenslandica]
Length = 504
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/489 (44%), Positives = 319/489 (65%), Gaps = 16/489 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG + PN ANMCVACLR++VDITEG+ K I C C+ YLQPP W+ LE
Sbjct: 18 ILCCQCGTMIEPNPANMCVACLRTQVDITEGIPKQSTIYFCRSCERYLQPPSGWVSCSLE 77
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L +V LV+A FIWTEPHSKR+K+KL +QKE+L G +L+Q +VVE++
Sbjct: 78 SRELLALCLKKLKGLGKVHLVDAGFIWTEPHSKRLKIKLTIQKEMLAGTLLQQVFVVEFI 137
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MC+ C R +A D W A VQ+RQ TH++TF YLEQLILKH+ + +RI ++ G
Sbjct: 138 VHHQMCEDCQRREAK-DYWKAVVQVRQKTTHKKTFLYLEQLILKHNIHSNVLRIKEIKGG 196
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ + A K VEF+ V P + + ++L+SHD SN +NYK+TFSVEI P+CR+++
Sbjct: 197 LDFYYAQKQDARKMVEFIMSVVPSKYKTSQELISHDVHSNTYNYKFTFSVEIVPVCRDNV 256
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLP KVA SLGN+ P+VIC KV +S+ ++DP L+ + +D YWR+ F SL RQL
Sbjct: 257 VCLPRKVANSLGNISPVVICSKVNSSLQVIDPTNLQVAEMSSDIYWRTPFTSLFDHRQLT 316
Query: 317 EYIVLDVEVVSSEV--NVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYAL 374
+++VL +EV+ + G K+VL++A VA + + D RTHLGH +N GD L
Sbjct: 317 QFLVLQIEVLPGQFVSRSGSRKHVLSEAWVAPLEEL---DRQMYCRTHLGHFINTGDVVL 373
Query: 375 GYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKG 434
G D AN N+ DK K +P+ +L+KK+Y + RLR R + R W+L+SL E +D
Sbjct: 374 GVDFTRANLNNEHFDKLKTTEIPDVVLVKKAYGD-RLR-RHRKRKWELQSLPKETED--- 428
Query: 435 RTDQEKMNKEYEEFLRDLEENPELRFNISLYR--NKDYQPSEMASVTD---GEDVPSVPL 489
+ ++ + ++ +F+ DLEE+ R +I++Y N P E +T E P + +
Sbjct: 429 KMEEGEEERDLLDFMEDLEEDKTYRQDINIYMKPNDGVVPVENGGLTGEEEEESYPQIGV 488
Query: 490 DELLADLDL 498
+E+L +L +
Sbjct: 489 EEMLQNLTI 497
>gi|320164255|gb|EFW41154.1| RNA binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 550
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/489 (44%), Positives = 323/489 (66%), Gaps = 19/489 (3%)
Query: 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYL-QPPRTWIKAQLESKELLTFCVKRLKNL 91
MCV C+R+EVDIT+G+ KH I++ C C+ YL + W+ A+LES+ELLT C+K+++ L
Sbjct: 1 MCVDCIRNEVDITDGIAKHGILNWCRNCERYLNHNGQNWLVAELESRELLTLCLKKIRGL 60
Query: 92 NRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQAN 151
+VR+ +A FIWTEPHS+RIKVK+ ++K+ NGAI+ ++V+E+V Q C C R AN
Sbjct: 61 GKVRVQDAGFIWTEPHSRRIKVKVVIEKD-FNGAIVRHAFVIEFVVQSLQCPQCQRRMAN 119
Query: 152 PDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFV 211
D W A VQ+RQ V H++TF++LEQLILKH A + I I + G+DF++ ++S A+K V
Sbjct: 120 -DNWKAIVQVRQRVDHKKTFYFLEQLILKHKAHSFTINIKERPDGLDFYYSSKSDAMKMV 178
Query: 212 EFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLG 271
+F+ VAPV + ++L+S D +SN NYK+T+SV++ PIC+ DL+CLP ++A LGN+
Sbjct: 179 DFLNAVAPVTYKTSERLISTDLQSNTSNYKFTYSVDVVPICKNDLVCLPKQLARQLGNID 238
Query: 272 PLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVN 331
L+IC +V NS+ L+DP TL+ + + R F++L + + LVEY +L++E
Sbjct: 239 QLLICYRVGNSVHLIDPRTLQVTEISVHLFNRHPFRALSSQKHLVEYTILEIE----PTG 294
Query: 332 VGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKY 391
V K+ +A+ AR DFGKND +F RTHLG++L GD LG+D+ N ND ++Y
Sbjct: 295 VTNGKFAMAEFTAARTRDFGKNDIVFQGRTHLGNVLKTGDTCLGFDIGYLNFNDENANEY 354
Query: 392 KGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRD 451
LP+ LIKK+Y E R+R R K R+W+L++L+ E + R D+EK ++E FL D
Sbjct: 355 PTDRLPDVALIKKTYPE-RIRSR-KNRTWRLQTLNKESEGISKR-DEEKAVADFEGFLED 411
Query: 452 LEENPELRFNISLYR--NKDYQPSEMASV-------TDGEDVPSVPLDELLADLDLKSDD 502
LEE+ ELR NI+LYR N D Q +++A + +GE+ PSV L+ELL D+ +
Sbjct: 412 LEEDRELRANINLYRDPNVDLQAAQLAEIERRQYLEQEGEEDPSVGLEELLEDMSINDAG 471
Query: 503 GEGDDSMRE 511
+ +D+ E
Sbjct: 472 PDAEDAAAE 480
>gi|50555484|ref|XP_505150.1| 60S ribosomal export protein NMD3 [Yarrowia lipolytica CLIB122]
gi|49651020|emb|CAG77957.1| YALI0F08151p [Yarrowia lipolytica CLIB122]
Length = 505
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/498 (43%), Positives = 316/498 (63%), Gaps = 23/498 (4%)
Query: 15 GSVLCCKCGIPM---APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+VLC CG P+ N +C C+ DIT+ + + ++ C CD +LQPP +W
Sbjct: 8 ATVLCHNCGTPLDGTLTNGTPICNQCIEMTTDITKEIPREASLTFCRNCDRWLQPPSSWT 67
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
AQ ES+ELL C+KRLK L++VRLV+A FIWTEPHS+RI++K+ VQ E + I++QS+
Sbjct: 68 AAQPESRELLALCLKRLKGLSKVRLVDASFIWTEPHSRRIRIKVTVQGEAVGQTIIQQSF 127
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
VEY+ C C++ + W A+VQ+RQ V H++TF YLEQLIL+H+A I I
Sbjct: 128 EVEYIVIATQCPDCAK-SFTANTWRASVQIRQKVPHKKTFLYLEQLILRHNAHLDTISIQ 186
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ G+DFF+ R+HA+K ++F+ V P R + ++L+S D + YK+++SVEI+PI
Sbjct: 187 ESRDGLDFFYSQRNHALKMLDFLASVTPCRHKRSEELISMDTHTAKKQYKFSYSVEIAPI 246
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
CR+DL+ LPP +A S N+ PLV+C KVTN++ +DP TL+ + YWR F SL
Sbjct: 247 CRDDLVVLPPSIAKSNANISPLVLCTKVTNTLHFVDPNTLQTAEIPGSVYWRKQFPSLAD 306
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
+ +L E+IVLD+E + V G K+ LADA VARV D G+NDT ++IRTHLG +L+PGD
Sbjct: 307 ASRLQEFIVLDIEPLGP---VKG-KFALADATVARVGDMGRNDTTYNIRTHLGGVLHPGD 362
Query: 372 YALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME--- 428
A GY + ++N N+ D+ LP+ IL+KK Y +R +KR+ R WKLK + +E
Sbjct: 363 SAYGYYMVTSNFNNAYWDELDKDNLPDVILVKKHYPGRR-KKRN--RHWKLKRMALEHNL 419
Query: 429 VDDSK-GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD------- 480
DD K +TD +K ++YE+FL++LEE+ ELR ++LY+ Q + D
Sbjct: 420 EDDPKVTKTDLDKAEQDYEQFLQELEEDTELRGTVNLYKRTVPQMPALPKTGDEMEASEE 479
Query: 481 -GEDVPSVPLDELLADLD 497
GE VP + +DELL DL+
Sbjct: 480 EGEGVPEIGVDELLDDLE 497
>gi|383857986|ref|XP_003704484.1| PREDICTED: 60S ribosomal export protein NMD3-like [Megachile
rotundata]
Length = 504
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/496 (45%), Positives = 320/496 (64%), Gaps = 18/496 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC CGI + PN AN CVACLR+++DITE + K I C C+ YLQPP WI A LE
Sbjct: 14 ILCCMCGISIEPNPANTCVACLRTQIDITENVPKQATIHFCKGCERYLQPPSEWIHAALE 73
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELLT C+K+LK+LNR++L++A F+WTEPHS R+KVKL VQ EV+NGA+L+Q ++VEY
Sbjct: 74 SRELLTLCLKKLKSLNRLKLIDAGFVWTEPHSMRLKVKLTVQAEVMNGAVLQQVFIVEYT 133
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MCD C R +A D W A VQ+RQ T+++TF+YLEQLILK+ A + + I + +G
Sbjct: 134 VNHQMCDDCHRTEAK-DYWRALVQVRQRATNKKTFYYLEQLILKYKAHEQTLGIKPIHEG 192
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFFF N + A K V+F+ V P R H K+L+SHD SN +NYK+T+SVEI PI R+ +
Sbjct: 193 LDFFFANEAAARKMVDFLSSVIPCRYDHSKKLISHDIHSNIYNYKFTYSVEIVPISRDSV 252
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K++ LG + + + KV+NSI L+D T + ++A YWR F S+ +QL+
Sbjct: 253 VCLSKKLSHQLGGINSICLVYKVSNSIHLIDVSTGQIAEINATLYWRHPFNSICNPKQLI 312
Query: 317 EYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EYIV+D+E + + SK+++AD + R D G +D RTHLGH+L P
Sbjct: 313 EYIVMDIEPIKFKDRKFFPGQGSISSKHIIADVWLVRSCDLGISDNSIHTRTHLGHILKP 372
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD LGY L +N ND + ++P+ IL KKSY + + +R + R WKLK + ++
Sbjct: 373 GDTVLGYALGESNINDENFELLNKDLVPDIILTKKSYLQDKAARR-RMRIWKLKHM-VQQ 430
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN-KDYQPSEMASVTDGEDVPSVP 488
DD+ TD N +Y EFL D+EE+PE+R NI+++R+ K P + + D P +
Sbjct: 431 DDNSMMTD----NNDYYEFLEDIEEDPEMRQNINIFRDKKKVIPVDTNELPDLS-CPQIT 485
Query: 489 LDELLADLDLKSDDGE 504
L+E+L DL + DD E
Sbjct: 486 LEEMLDDLAI--DDVE 499
>gi|348684719|gb|EGZ24534.1| hypothetical protein PHYSODRAFT_480926 [Phytophthora sojae]
Length = 510
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/495 (44%), Positives = 329/495 (66%), Gaps = 22/495 (4%)
Query: 22 CGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELL 81
C P+ NAAN CV CL+S+VD+TEG+ K VII C C + +PP W+ A+LES+ELL
Sbjct: 2 CATPIVANAANTCVNCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPP--WVAAELESRELL 59
Query: 82 TFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHM 141
C+K++ NLNRV+L++A +IWTEPHS+R+K+KL VQKEV++ I++QS+VV +V ++
Sbjct: 60 AMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKLTVQKEVMSKMIMQQSFVVTFVVRNQQ 119
Query: 142 CDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFF 201
CD+C AN W A VQ+RQ V H+RTFF+LEQLILKH A + I G+DFFF
Sbjct: 120 CDACQASFAN-QSWRAVVQVRQRVDHKRTFFFLEQLILKHRAHEKTTNIESHPDGVDFFF 178
Query: 202 GNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPP 261
R+HA++FV+F+ + P++ + K+L+S D SN NYK+T++VEI+P+C++DL+ LP
Sbjct: 179 SERNHALRFVDFLQESVPMKLKTAKKLISADNHSNTHNYKFTYAVEIAPVCKDDLVVLPV 238
Query: 262 KVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVL 321
K+A LGN+ L + VT+SI ++DPFT + +D+++YWR F++L + + + ++ VL
Sbjct: 239 KLARMLGNMSCLCLVQSVTSSIHVVDPFTTQVAEIDSEKYWRYPFRALRSIKAMTDFTVL 298
Query: 322 DVEVVSSEVNVGGSKYV-------LADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYAL 374
D ++ + GG + + LAD +V R +DFG ND F +HLG +L+ GD A
Sbjct: 299 DSNPMA--IPSGGGRAIRVTRKTRLADMEVVRDADFGVNDARFRTVSHLGMILHVGDSAR 356
Query: 375 GYDLYSANNNDMELDKY--KGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD-MEVDD 431
GYDL SA ND +L G+ LP+ +L+KK + +R++KR+ R+WKLK ++ +E
Sbjct: 357 GYDLTSAVFNDADLAPLVQSGVSLPDVVLVKKMF-PRRIQKRA--RNWKLKKMEGVEQAG 413
Query: 432 SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN--KDYQPSEMASVTDGEDV--PSV 487
+ D K ++YE+FL +LEE+ E+R I+LY++ K +PSE + +DV P+V
Sbjct: 414 PVRKADLSKEEQDYEQFLDELEEDKEMRSQINLYKDETKQTKPSEDDDAMEEDDVGAPAV 473
Query: 488 PLDELLADLDLKSDD 502
L ELL DL +K D+
Sbjct: 474 ELHELLDDLAMKEDE 488
>gi|451856716|gb|EMD70007.1| hypothetical protein COCSADRAFT_78220 [Cochliobolus sativus ND90Pr]
Length = 508
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/513 (41%), Positives = 322/513 (62%), Gaps = 21/513 (4%)
Query: 4 DAGMFT-VPQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
DA F P+ ++LC CG P+ + C C++ + D+T G+Q+ I+ C +CD
Sbjct: 3 DAQSFAPAPKNAATILCADCGAPVDGTISGAFCYDCIKLKTDVTGGIQREAILLMCRDCD 62
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
+L PP TW+ A ES+ELL C+++L+ LN++R+++A FIWTEPHS+RIKVK+ VQ E+
Sbjct: 63 RWLSPPSTWVVAPPESRELLALCLRKLRGLNKLRIIDASFIWTEPHSRRIKVKITVQSEL 122
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
GAI++Q++ VEY Q + C C++ + + W A VQ+RQ V H+RTF YLEQLILKH
Sbjct: 123 NEGAIMQQTFEVEYTQNYNQCPDCAKSYTH-NTWRACVQVRQKVPHKRTFLYLEQLILKH 181
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
A I I ++ GIDFFF R+HAV F +F+ V PV + ++L+SHD ++ NYK
Sbjct: 182 GAHKDTINIKEVHDGIDFFFAQRNHAVAFCDFLKAVIPVNIKRSEELISHDIHTSTKNYK 241
Query: 242 YTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQY 301
++FS EI PIC++DL+ LP +A +GN+ PL +C ++ S+ LLDP TL+ + D Y
Sbjct: 242 FSFSCEIVPICKDDLVVLPIPLAKKIGNISPLTLCSRIGTSVQLLDPATLQTADVATDIY 301
Query: 302 WRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRT 361
WR+ F+ L ++L E++VLD+E + + + LA+A VAR SD G NDT + RT
Sbjct: 302 WRTPFRPLADVQELTEFVVLDIEPLGKQ----SGRNFLAEATVARASDMGVNDTTYYCRT 357
Query: 362 HLGHLLNPGDYALGYDLYSAN-NND----MELDKYKGLVLPETILIKKSYEEKRLRKRSK 416
HLG +L+ GD +GY L + N NND +E + +P+ +L+KK Y+ R RK
Sbjct: 358 HLGGILHVGDSVMGYLLANTNFNNDLFDVLEQNNKYASAIPDVVLVKKYYQ--RSRKSKN 415
Query: 417 PRSWKLKSLDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLY-----RNKDY 470
R+W++K + E + R DQEKM +++E FL+D+EE+ ELR ++LY R+ D
Sbjct: 416 KRNWRVKRMHKEEGEMLPRKQDQEKMERDFEMFLQDVEEDQELRQTMALYKAQQQRDADA 475
Query: 471 QPSEMASVTDGEDVPSVPLDELLADL-DLKSDD 502
+E + D ++ +P+D+LL D D+K +D
Sbjct: 476 METESSLGDDEDEGIQIPMDQLLDDFEDMKMED 508
>gi|451993809|gb|EMD86281.1| hypothetical protein COCHEDRAFT_1146894 [Cochliobolus
heterostrophus C5]
Length = 512
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/513 (41%), Positives = 322/513 (62%), Gaps = 21/513 (4%)
Query: 4 DAGMFT-VPQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
DA F P+ ++LC CG P+ + C C++ + D+T G+Q+ I+ C +CD
Sbjct: 7 DAQSFAPAPKNAATILCADCGAPVDGTISGAFCYDCIKLKTDVTGGIQREAILLMCRDCD 66
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
+L PP TW+ A ES+ELL C+++L+ LN++R+++A FIWTEPHS+RIKVK+ VQ E+
Sbjct: 67 RWLSPPSTWVVAPPESRELLALCLRKLRGLNKLRIIDASFIWTEPHSRRIKVKITVQSEL 126
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
GAI++Q++ VEY Q + C C++ + + W A VQ+RQ V H+RTF YLEQLILKH
Sbjct: 127 NEGAIMQQTFEVEYTQNYNQCPDCAKSYTH-NTWRACVQVRQKVPHKRTFLYLEQLILKH 185
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
A I I ++ GIDFFF R+HAV F +F+ V PV + ++L+SHD ++ NYK
Sbjct: 186 GAHKDTINIKEVHDGIDFFFAQRNHAVAFCDFLKAVIPVNIKRSEELISHDIHTSTKNYK 245
Query: 242 YTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQY 301
++FS EI PIC++DL+ LP +A +GN+ PL +C ++ S+ LLDP TL+ + D Y
Sbjct: 246 FSFSCEIVPICKDDLVVLPIPLAKKIGNISPLTLCSRIGTSVQLLDPATLQTADVATDIY 305
Query: 302 WRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRT 361
WR+ F+ L ++L E++VLD+E + + + LA+A VAR SD G NDT + RT
Sbjct: 306 WRTPFRPLADVQELTEFVVLDIEPLGKQ----SGRNFLAEATVARASDMGVNDTTYYCRT 361
Query: 362 HLGHLLNPGDYALGYDLYSAN-NND----MELDKYKGLVLPETILIKKSYEEKRLRKRSK 416
HLG +L+ GD +GY L + N NND +E + +P+ +L+KK Y+ R RK
Sbjct: 362 HLGGILHVGDSVMGYLLANTNFNNDLFDVLEQNNKYASAIPDVVLVKKFYQ--RSRKSKN 419
Query: 417 PRSWKLKSLDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLY-----RNKDY 470
R+W++K + E + R DQEKM +++E FL+D+EE+ ELR ++LY R+ D
Sbjct: 420 KRNWRVKRMHKEEGEMLPRKQDQEKMERDFEMFLQDVEEDQELRQTMALYKAQQQRDADA 479
Query: 471 QPSEMASVTDGEDVPSVPLDELLADL-DLKSDD 502
+E + D ++ +P+D+LL D D+K +D
Sbjct: 480 METESSLGDDEDEGIQIPMDQLLDDFEDMKMED 512
>gi|195398697|ref|XP_002057957.1| GJ15765 [Drosophila virilis]
gi|194150381|gb|EDW66065.1| GJ15765 [Drosophila virilis]
Length = 525
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/500 (41%), Positives = 311/500 (62%), Gaps = 20/500 (4%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+ + PN ANMCV CLR+ VDITE + K ++ C C+ YLQPP W++A LE
Sbjct: 25 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWVQASLE 84
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E+ G +L+Q ++VE+
Sbjct: 85 SRELLAVCLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEISGGTVLQQVFIVEFT 144
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q+ MC C R +A D W VQ+RQ +++TF+YLEQLILK+ A + I G
Sbjct: 145 VQNQMCTDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKYKAHENTLGIKPEHGG 203
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ + +HA + V+F+ + P + K+L+SHD SNN+NYKY++SVEI+P+ ++
Sbjct: 204 LDFYYVSENHARRMVDFLQTMVPAKVTTSKRLISHDIHSNNYNYKYSWSVEIAPVSKDSA 263
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+C+ K+ LGN+ P+ + +V+++I L+DP T + L Y+R+ F+++ +QLV
Sbjct: 264 VCISKKLRQQLGNISPVCLVNRVSSNIHLIDPLTGQIAELTTQVYFRAPFEAICNPKQLV 323
Query: 317 EYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+V+D++V+ + + +K+ L D V R S+ G ND R+HLGHLL
Sbjct: 324 EYVVMDIDVIHEKDRKCYPGQGMLSNKHALCDVWVVRTSELGINDNPIHTRSHLGHLLKV 383
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD +GY+ AN ND E DK ++P+ IL++K Y+ + R R WK+K L E
Sbjct: 384 GDSVMGYNTGEANINDPEFDKLPSHLIPDVILVRKHYDRQ---TRLSQRLWKIKHLADEK 440
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPL 489
D + + D Y EFL D+EENP++R +I++YR+ +P + DVP + L
Sbjct: 441 TDERSKYD-------YHEFLDDIEENPDIRGHINIYRDSK-KPLPIEVQPSAGDVPQITL 492
Query: 490 DELLADLDLK-SDDGEGDDS 508
E+L D+ L +DD GD S
Sbjct: 493 AEMLEDMTLDCADDEMGDLS 512
>gi|453081261|gb|EMF09310.1| NMD3-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 522
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/513 (41%), Positives = 324/513 (63%), Gaps = 22/513 (4%)
Query: 11 PQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
P T+ +VLC CG P+ A +C CL++ VDIT +++ I+ C +C+ + PP
Sbjct: 14 PTTMATVLCYNCGAPIDGTQAAGALCNDCLKTTVDITSSIERDGILLMCRDCERWHSPPA 73
Query: 69 TWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
TW+ A ES+ELL C+++L+ L++ R+++A FIWTEPHS+R+KVK+ VQ+E + G IL+
Sbjct: 74 TWVVAAPESRELLALCLRKLRGLHKTRIIDASFIWTEPHSRRVKVKITVQQEAMQGTILQ 133
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q++ VE+ Q C C++ + + W A VQ+RQ V+H+RTF YLEQLILK A I
Sbjct: 134 QTFEVEFTQNYKQCPDCAKSYTH-NTWRAVVQVRQKVSHKRTFLYLEQLILKQGAHNNTI 192
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
I ++ GIDF+F R+ A KFV+F+ V PV ++ ++L+S D ++ +YK+TFSV +
Sbjct: 193 NIKEVPNGIDFYFAERNSAEKFVDFLQSVVPVTTKKAQELISMDTHTSVKSYKFTFSVNL 252
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PIC++DL+ LPPK+A S+GN+ PL +C ++ S+ LLDP TL+ L YWR F
Sbjct: 253 VPICKDDLVALPPKLAKSIGNISPLTLCYRIGTSVNLLDPNTLQTADLSTPIYWREPFSP 312
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
L S+ L+E++V+D+E ++ LA+A V R SD G ND + IRTHLG +LN
Sbjct: 313 LAASKDLIEFVVMDIEPTGQR----HGRFELAEATVVRASDLGVNDNTYLIRTHLGSVLN 368
Query: 369 PGDYALGYDLYSANNND------MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
GD A+GY L N+ E KY G +P+ IL+KK YE + +K K R+WKL
Sbjct: 369 AGDSAMGYLLSGTQFNNPNWEALEESKKYSG-TIPDVILVKKHYERTK-KKSGKGRNWKL 426
Query: 423 KSLDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD-----YQPSEMA 476
+ + E + K R DQ++ +YE+FL+DLE++PELR N++LYRNKD SEM
Sbjct: 427 RRMAREESEMKPRKQDQDRDEIDYEQFLQDLEQDPELRGNLNLYRNKDAAAAAAAASEME 486
Query: 477 SVTDGEDVPSVPLDELLADL-DLKSDDGEGDDS 508
+ + +D +P+D+L+ ++ D+ DD ++S
Sbjct: 487 TDDEDDDGLQIPMDQLIDEMEDMGMDDVSEEES 519
>gi|189206437|ref|XP_001939553.1| 60S ribosomal export protein NMD3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975646|gb|EDU42272.1| nonsense-mediated mRNA decay protein 3 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 512
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/508 (41%), Positives = 319/508 (62%), Gaps = 23/508 (4%)
Query: 11 PQTVGSVLCCKCGIPMAPN-AANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
P+ ++LC CG P+ + C C++ + D+T G+Q+ I+ C +CD +L PP T
Sbjct: 12 PKNSATILCADCGAPVDGTLSGAFCYDCIKLKTDVTGGIQREAILLMCRDCDRWLSPPTT 71
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W+ A ES+ELL C+++L+ LN++R+++A FIWTEPHS+RIKVK+ VQ E+ GAI++Q
Sbjct: 72 WVVAAPESRELLALCLRKLRGLNKLRIIDASFIWTEPHSRRIKVKITVQSEINEGAIMQQ 131
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ VEY Q + C C++ + + W A VQ+RQ V H+RTF YLEQLILKH A I
Sbjct: 132 SFEVEYTQNYNQCPDCAKSYTH-NTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDTIN 190
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I ++ GIDFFF R+HAV F +F+ V PV + ++L+SHD ++ NYK++FS EI
Sbjct: 191 IKEVHDGIDFFFAQRNHAVSFCDFLKAVIPVNIKRSEELISHDIHTSTKNYKFSFSCEIV 250
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP +A +GN+ PL +C ++ S+ LLDP TL+ + D YWR+ F+ L
Sbjct: 251 PICKDDLVVLPIPLAKKIGNISPLTLCTRIGTSVQLLDPATLQTADVATDIYWRTPFRPL 310
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++L E+IVLD+E + + + LA+A VAR SD G NDT + RTHLG +L+
Sbjct: 311 ADVQELTEFIVLDIEPLGKQ----SGRNFLAEATVARASDMGVNDTTYYCRTHLGGILHV 366
Query: 370 GDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD +GY L + N N +E + +P+ +L+KK Y+ R +K R+W++K
Sbjct: 367 GDSVMGYLLSNTNFNSELFDVLESNNKYASAIPDVMLVKKYYQ--RSKKNKNKRNWRVKR 424
Query: 425 LDMEVDDSKGRT-DQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA------- 476
++ E + R DQEKM +++E FL+D+EE+ ELR ++LY+ + Q + A
Sbjct: 425 MNKEEGEMLPRKQDQEKMERDFEMFLQDVEEDQELRATMALYKAQQEQKQKDADAMETES 484
Query: 477 SVTDGEDVP-SVPLDELLADL-DLKSDD 502
S+ D ED +P+++LL D D+K DD
Sbjct: 485 SLGDDEDEGIQIPMEQLLDDFEDMKMDD 512
>gi|330906474|ref|XP_003295489.1| 60S ribosomal export protein NMD3 [Pyrenophora teres f. teres 0-1]
gi|311333193|gb|EFQ96416.1| hypothetical protein PTT_01269 [Pyrenophora teres f. teres 0-1]
Length = 516
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/508 (40%), Positives = 318/508 (62%), Gaps = 23/508 (4%)
Query: 11 PQTVGSVLCCKCGIPMAPN-AANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
P+ ++LC CG P+ + C C++ + D+T G+Q+ I+ C +CD +L PP T
Sbjct: 16 PKNSATILCADCGAPVDGTLSGAFCYDCIKLKTDVTGGIQREAILLMCRDCDRWLSPPTT 75
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W+ A ES+ELL C+++L+ LN++R+++A FIWTEPHS+RIKVK+ VQ E+ GAI++Q
Sbjct: 76 WVVAAPESRELLALCLRKLRGLNKLRIIDASFIWTEPHSRRIKVKITVQSEINEGAIMQQ 135
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ VEY Q + C C++ + + W A VQ+RQ V H+RTF YLEQLILKH A I
Sbjct: 136 SFEVEYTQNYNQCPDCAKSYTH-NTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDTIN 194
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I ++ GIDFFF R+HAV F +F+ V PV + ++L+SHD ++ NYK++FS EI
Sbjct: 195 IKEVHDGIDFFFAQRNHAVSFCDFLKAVIPVNIKRSEELISHDIHTSTKNYKFSFSCEIV 254
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP +A +GN+ PL +C ++ S+ LLDP TL+ + D YWR+ F+ L
Sbjct: 255 PICKDDLVVLPIPLAKKIGNISPLTLCTRIGTSVQLLDPATLQTADVATDIYWRTPFRPL 314
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++L E+IVLD+E + + + LA+A VAR SD G NDT + RTHLG +L+
Sbjct: 315 ADVQELTEFIVLDIEPLGKQ----SGRNFLAEATVARASDMGVNDTTYYCRTHLGGILHV 370
Query: 370 GDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD +GY L + N N +E + +P+ +L+KK Y+ R +K R+W++K
Sbjct: 371 GDSVMGYLLSNTNFNSELFDVLESNNKYASAIPDVMLVKKYYQ--RSKKNKNKRNWRVKR 428
Query: 425 LDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLY--------RNKDYQPSEM 475
++ E + R DQEKM +++E FL+D+EE+ ELR ++LY R+ D +E
Sbjct: 429 MNKEEGEMLPRKQDQEKMERDFEMFLQDVEEDQELRATMALYKAQQEQKQRDADAMETES 488
Query: 476 ASVTDGEDVPSVPLDELLADL-DLKSDD 502
+ D ++ +P+++LL D D+K DD
Sbjct: 489 SLGDDEDEGIQIPMEQLLDDFEDMKMDD 516
>gi|388579793|gb|EIM20113.1| NMD3-domain-containing protein, partial [Wallemia sebi CBS 633.66]
Length = 487
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/490 (43%), Positives = 308/490 (62%), Gaps = 30/490 (6%)
Query: 29 NAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRL 88
N+AN+CV CLR+ VDIT + K ++ C CD Y PP W+ A ES+ELL C+K+L
Sbjct: 1 NSANLCVGCLRNTVDITAEIPKSSSVTFCRGCDRYSNPPNGWVLADWESRELLAICLKKL 60
Query: 89 KNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRV 148
K L+++RL++A F+WTEPHSKRIKVKL VQKEVL IL+Q + V Y C C+R+
Sbjct: 61 KGLSKIRLIDAGFVWTEPHSKRIKVKLTVQKEVLANTILQQVFEVTYTILGAQCPDCTRM 120
Query: 149 QANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAV 208
A + W ++Q+RQ V H+RTFFYLEQLILKH A + I + G+DF++ R A+
Sbjct: 121 AAK-NTWQTSIQVRQKVPHKRTFFYLEQLILKHGAHKDCVNILERKDGLDFYYLQRQAAL 179
Query: 209 KFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLG 268
+ +EF+ V P+R + ++L++ D + + YK+T+SVEI P+C++DL+CLP K+A
Sbjct: 180 RMLEFLQNVVPLRYKASEELLTTDVHTGSSKYKFTYSVEIVPVCKDDLVCLPIKLARQFS 239
Query: 269 NLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSS 328
N+ PLV+C ++ NS+ LLDP TL + A YWR+ F++L T +LVEYIVLD+E +
Sbjct: 240 NISPLVLCSRIGNSVHLLDPMTLHVTDVTAPTYWRAPFETLATVGELVEYIVLDIEPLGP 299
Query: 329 EVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMEL 388
K VLAD QV + S +D IF RTHLGH+L GD LGY+L +N N
Sbjct: 300 ----TRGKLVLADVQVMKASGGASDDEIFHTRTHLGHILQAGDSCLGYNLKDSNFNSDNF 355
Query: 389 DKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSK-------------GR 435
+ LP+ +++KK+Y + RK+++PR WKLKS+ + +DS G
Sbjct: 356 ESLNQDRLPDVVIVKKAYPNR--RKKNRPRQWKLKSIAKDAEDSNVEGAFGRGALGRRGG 413
Query: 436 TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQP--------SEMASVTDGEDVPSV 487
D +K+ K+YEEFL DLEE+PE+R ++LY++++ Q S+ + + E++P
Sbjct: 414 VDTDKVEKQYEEFLNDLEEDPEMRAGVNLYKSEEQQTKDENEMDESDGGELEEDENLPK- 472
Query: 488 PLDELLADLD 497
+DELL DL+
Sbjct: 473 -MDELLEDLE 481
>gi|195134220|ref|XP_002011535.1| GI11082 [Drosophila mojavensis]
gi|193906658|gb|EDW05525.1| GI11082 [Drosophila mojavensis]
Length = 522
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/494 (42%), Positives = 309/494 (62%), Gaps = 21/494 (4%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+ + PN ANMCV CLR+ VDITE + K ++ C C+ YLQPP WI+A LE
Sbjct: 23 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQASLE 82
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E+ G +L+Q ++VE+
Sbjct: 83 SRELLAICLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEISGGTVLQQVFIVEFT 142
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q+ MC C R +A D W VQ+RQ +++TF+YLEQLILK+ A + I G
Sbjct: 143 VQNQMCTDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKYKAHENTLGIKPEHGG 201
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ + +HA + V+F+ + PV+ K+L+SHD SNN+NYKY +SVEI+PI ++
Sbjct: 202 LDFYYVSENHARRMVDFLQTMVPVKVTTSKRLISHDIHSNNYNYKYNWSVEIAPISKDSA 261
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K+ LGN+ P+ + +V++SI L+DP T + +++ Y+R+ F+++ +QLV
Sbjct: 262 VCLTKKLRQQLGNISPVCLVNRVSSSIHLIDPLTAQIAEVNSQVYFRAPFEAICNPKQLV 321
Query: 317 EYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EYIV+D++V+ + + K+ L D V R S+ G ND R+HLGH+L
Sbjct: 322 EYIVMDIDVIHDKDRKTYPGQGMVSFKHALCDIWVVRSSELGINDNPVHTRSHLGHVLKV 381
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD +GY+ AN N+ E DK ++P+ +L++K Y+ + R R WKLK L E
Sbjct: 382 GDSVMGYNTAEANINNPEFDKLTPNLIPDVVLVRKHYDRQ---TRLSQRLWKLKHLADEA 438
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN-KDYQPSEMASVTDGEDVPSVP 488
D + + D Y EFL D+EENP++R I++YR+ K P E+ + DVP +
Sbjct: 439 TDERSKYD-------YHEFLDDIEENPDIRGQINVYRDSKKTLPIEV--LQSATDVPQIT 489
Query: 489 LDELLADLDLKSDD 502
L E+L D+ L+ D
Sbjct: 490 LAEMLEDMTLECAD 503
>gi|194768751|ref|XP_001966475.1| GF21978 [Drosophila ananassae]
gi|190617239|gb|EDV32763.1| GF21978 [Drosophila ananassae]
Length = 522
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/503 (41%), Positives = 312/503 (62%), Gaps = 20/503 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+P+ N ANMCV CLR+ VDITE + K ++ C C+ YLQPP WI+A LE
Sbjct: 26 ILCCECGVPIQSNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQASLE 85
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E+ G +L+Q +VVE+
Sbjct: 86 SRELLAVCLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEITGGTVLQQVFVVEFT 145
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q+ MC+ C R +A D W VQ+RQ +++TF+YLEQLILKH A + I G
Sbjct: 146 VQNQMCNDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEHGG 204
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ N +HA + ++F+ + P + K+L+SHD SNN+NYKY +S EI+P+ ++
Sbjct: 205 LDFFYANDNHARRMIDFLQTMVPGKVTTSKRLISHDIHSNNYNYKYNWSYEIAPVSKDSA 264
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K+ LGNL P+ + +V++SI L+DP T + L + Y+R+ F+++ +QLV
Sbjct: 265 VCLSKKLRHQLGNLSPVCLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAICNPKQLV 324
Query: 317 EYIVLDVEVV---SSEVNVGGS----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY+V+D++V+ + G K+ L D V R S+ G ND R+HLGHLL
Sbjct: 325 EYVVMDIDVILEKDRKTYPGQGQVSFKHALCDIWVLRASELGINDNPIHTRSHLGHLLKV 384
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD +GY+ AN ND E +K +P+ IL++K Y+ + R R WK+K L E
Sbjct: 385 GDSVMGYNTGEANINDPEFEKLTPEQVPDVILVRKHYDRQ---TRLSQRLWKIKHLAAEA 441
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPL 489
D + + D Y EFL DLE++ +LR I++YR+ + + + + DVP + L
Sbjct: 442 TDERSKHD-------YHEFLDDLEDHEDLRGQINIYRDSN-KTAPIDLQAGNSDVPQITL 493
Query: 490 DELLADLDLK-SDDGEGDDSMRE 511
+E++ D+ L+ +DD G+D+ E
Sbjct: 494 EEMMEDMTLECADDEMGEDAGAE 516
>gi|66559176|ref|XP_624393.1| PREDICTED: 60S ribosomal export protein NMD3 [Apis mellifera]
Length = 503
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/493 (44%), Positives = 314/493 (63%), Gaps = 17/493 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
Q +LCC CGI + PN ANMCVACLR++VD+TE + K I C C+ YLQPP WI
Sbjct: 9 QQKSMILCCICGISIEPNPANMCVACLRTQVDVTENIPKQATIHFCKGCERYLQPPGEWI 68
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A LES+ELLT C+K+LK LNRV+L++A F+WTEPHS R+KVKL VQ EV+ GA+L+Q +
Sbjct: 69 HAALESRELLTLCLKKLKGLNRVKLIDAGFVWTEPHSMRLKVKLTVQAEVIGGAVLQQVF 128
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
+VEY MC+ C R +A D W A VQ+RQ T+++TF+YLEQLILK+ A + + I
Sbjct: 129 IVEYTINHQMCNDCHRTEAK-DYWRALVQVRQRATNKKTFYYLEQLILKYKAHEQTLGIK 187
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ +G+DFFF N + A K V+F+ V P R H K+L+SHD SN +NYK+T+SVEI PI
Sbjct: 188 PIHEGLDFFFANEATARKMVDFLSSVIPCRYDHSKKLISHDIHSNIYNYKFTYSVEIVPI 247
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
R+ ++CLP K++ LG + + + K+TN I L+D + + L+A YWR +F S+
Sbjct: 248 SRDSIVCLPRKLSHQLGGINSICLVYKITNFIHLIDVSSGQIAELNASLYWRHAFNSICD 307
Query: 312 SRQLVEYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLG 364
+QL+EY V+D+E + + K+V+AD + + D G ND + RTHLG
Sbjct: 308 PKQLIEYTVMDIEQIKFKDRKFFPGQGTISDKHVIADVWLVKSCDLGINDNLIHTRTHLG 367
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
H+L PGD ALGY L +N ND + ++P+ IL KK+Y R +R + R+WKLK
Sbjct: 368 HVLKPGDTALGYALNDSNINDKNFEILNKDLVPDIILTKKNYTNDRAARR-RMRNWKLKH 426
Query: 425 LDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK-DYQPSEMASVTDGED 483
M D TD N +Y EFL D+EE+PE+R NI++++++ P + ++D
Sbjct: 427 --MLSDKDNMTTD----NNDYYEFLEDIEEDPEMRQNINIFKDRMKTIPIDTNELSDPS- 479
Query: 484 VPSVPLDELLADL 496
P + L+E+L DL
Sbjct: 480 YPQITLEEMLDDL 492
>gi|358393763|gb|EHK43164.1| hypothetical protein TRIATDRAFT_301080 [Trichoderma atroviride IMI
206040]
Length = 514
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/501 (42%), Positives = 313/501 (62%), Gaps = 25/501 (4%)
Query: 12 QTVGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
T ++LC CG P+ A C C++ DIT G+Q+ I C +C+ ++ PP +
Sbjct: 18 HTSATILCHNCGTPIDGTTATGATCYDCIKLTNDITNGIQREATIQQCRDCERWMLPPAS 77
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A ES+ELL C+K+L+ LN+VR+V+A FIWTEPHS+R+KVKL +Q V +G +L+Q
Sbjct: 78 WIIAMPESRELLALCLKKLRGLNKVRIVDASFIWTEPHSRRVKVKLTIQDSVQSGVLLQQ 137
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ + YV C C + P+ W A VQ+RQ V H+RTF +LEQLILKH A +
Sbjct: 138 SFEIVYVVAHQQCPDCQK-SFTPNHWRACVQVRQKVLHKRTFHFLEQLILKHGAHKETLN 196
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + GIDFFF R+ A KFV+F+ V PV+ + ++L+S D ++ +YK+TFS EI
Sbjct: 197 IKEAKDGIDFFFSVRNQAEKFVDFLNSVVPVKVKSAQELISMDTHTSKKSYKFTFSAEIV 256
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
P+CR+DL+ LP K+A GN+ PLV+C K+ ++ L+DP TL+ ++A YWR+ F +L
Sbjct: 257 PVCRDDLVALPIKMAKQSGNISPLVLCHKIGTAVYLMDPQTLQTAEVNASLYWRAPFTAL 316
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ +LVE+I++D+E ++ K++L +A VAR SD G ND + RTHLG LL P
Sbjct: 317 ADAMELVEFIIMDIEPTTTR----NGKWLLGEATVARASDLGVNDKTYFTRTHLGGLLQP 372
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD A+GY L +N N+ E D + ++P+ +L+KK Y +R +R +WKLK
Sbjct: 373 GDSAMGYLLNGSNFNNPEYDAIEESNTYSSIIPDVVLVKKHYPNRRRNRRR---NWKLKR 429
Query: 425 LDMEVDDSK---GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT-- 479
M D+ + + DQE+M+KEYE FLRD+EE+ ELR +++Y+N E S+
Sbjct: 430 --MAKDEGELLPKKADQERMDKEYEMFLRDVEEDEELRAALAVYKNARKVNDEEMSIAET 487
Query: 480 --DGED-VPSVPLDELLADLD 497
DG+D VP V +DELL D D
Sbjct: 488 DMDGDDGVPGVNMDELLDDFD 508
>gi|255956303|ref|XP_002568904.1| Pc21g19130 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590615|emb|CAP96810.1| Pc21g19130 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 527
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/526 (41%), Positives = 319/526 (60%), Gaps = 37/526 (7%)
Query: 1 MAQDAGMFTVPQ--TVGSVLCCKCG--IPMAPNAANMCVACLRSEVDITEGLQKHVIISH 56
M DA ++ Q ++LCC CG I +A +C C+R VD+ G+Q+ +I
Sbjct: 3 MDLDAPVYFTQQEKVAATILCCNCGAAIDGTLSAGALCSDCIRLTVDVAGGVQREAVIHC 62
Query: 57 CPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLK 116
C +C+ +LQPP +W+ A LESKELL C+++L+ LN+VR+++A FIWTEPHSKR++VK+
Sbjct: 63 CRDCERWLQPPNSWVVAALESKELLAICLRKLRGLNKVRIIDASFIWTEPHSKRLRVKIT 122
Query: 117 VQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQ 176
+Q E G I++Q + VEYV + C C++ + W A++Q+RQ V H+RTF YLEQ
Sbjct: 123 IQTEAFQGTIVQQQFEVEYVVANQQCSGCAKSYTH-HSWTASIQIRQKVPHKRTFLYLEQ 181
Query: 177 LILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSN 236
LILKH+A I I ++++G+DF+F R+ A + + F+ V P + +L+S D ++
Sbjct: 182 LILKHNAHKDTINIKEVNEGLDFYFAKRNEAERMLSFLSSVVPCTVKKSHELISMDIHTS 241
Query: 237 NFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFL 296
+YK+ FSV I PIC++DL+ LP K+A SL ++ PLVIC +V SI L+DP TLR L
Sbjct: 242 TSSYKFNFSVSIIPICKDDLVALPIKLARSLSDISPLVICHRVGTSINLMDPCTLRTADL 301
Query: 297 DADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTI 356
+ YWR F +L + +L E+I+LD+E S + G +Y+L++A VAR SD G NDT
Sbjct: 302 PSSIYWRQPFPNLADTTELREFIILDIE---STGHTNG-RYLLSEATVARASDLGSNDTT 357
Query: 357 FSIRTHLGHLLNPGDYALGYDLYSAN-NND----MELDKYKGLVLPETILIKKSYEEKRL 411
+ RTHLG +L+ GD LGY L NND +E G +P+ +LIKK Y
Sbjct: 358 YFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYGSTIPDVVLIKKHYVRS-- 415
Query: 412 RKRSKPRSWKLKSLDMEVDD----------SKGRTDQE--KMNKEYEEFLRDLEENPELR 459
K+SK RSW+LK + E ++ + R +QE +M ++YE FLRD+EE+ ELR
Sbjct: 416 -KKSKARSWRLKRMAREHEEEATAAVVNVPTNKRQEQEQARMEQDYEMFLRDVEEDQELR 474
Query: 460 FNISLYRNKDYQP--------SEMASVTDGEDVPSVPLDELLADLD 497
+ LY+N+ YQ + DG VP + +DELL D D
Sbjct: 475 QTLDLYKNRQYQARPDQMDEDDDEDMDEDGNAVPKINMDELLDDFD 520
>gi|323308785|gb|EGA62023.1| Nmd3p [Saccharomyces cerevisiae FostersO]
Length = 518
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/506 (41%), Positives = 314/506 (62%), Gaps = 23/506 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP W
Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQW 71
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI++KL VQ EV+ I++Q+
Sbjct: 72 IRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEVMTNTIIQQT 131
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I
Sbjct: 132 FEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 190
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI P
Sbjct: 191 SEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVP 250
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A S+GN+ V+C K++N++ +DP TL+ L YWR+ F +L
Sbjct: 251 ICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALA 310
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE+IVLDV+ S+ ++ G VLAD VAR SD G ND ++ +R+HLG + + G
Sbjct: 311 DVTQLVEFIVLDVD--STGISRGNR--VLADITVARTSDLGVNDQVYYVRSHLGGICHAG 366
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D +GY + ++N N D +P+ +L+KK Y+ RK K R WKLK + E
Sbjct: 367 DSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQ----RKSKKSRHWKLKRMAKEHK 422
Query: 431 DSKGRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ---PSEMASV 478
D D E+ K+YE FL++LEE+ ELR +++LY+N++
Sbjct: 423 DIDASLDYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDE 482
Query: 479 TDGEDVPSVPLDELLADLD-LKSDDG 503
+ ED P + +DELL +LD + +DG
Sbjct: 483 DEDEDAPQINIDELLDELDEMTLEDG 508
>gi|308459422|ref|XP_003092031.1| hypothetical protein CRE_23156 [Caenorhabditis remanei]
gi|308254449|gb|EFO98401.1| hypothetical protein CRE_23156 [Caenorhabditis remanei]
Length = 516
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/504 (42%), Positives = 307/504 (60%), Gaps = 20/504 (3%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
+ QTVG + CC+CG+ + PN ANMC CLRS VDITEG+Q+ I C CD Y PP
Sbjct: 6 IKQTVGLIACCECGVAIEPNPANMCSGCLRSRVDITEGIQRSCTIYMCKFCDRYFVPPSA 65
Query: 70 WIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W++A+LESKELL+ C+K+LK L +VRL +A F+WTE HSKRIKVK+ +QKEV IL+
Sbjct: 66 WMRAELESKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQ 125
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q+ VVE+ +CD C R +A D W A VQ+RQ ++T FYLEQL+LKH A
Sbjct: 126 QAVVVEFTVHSQLCDDCRRAEAK-DFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECT 184
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
+ + GIDF+F + A KFV+F+ V P + + ++LVSHD K+N ++YK+TF VEI
Sbjct: 185 GVKPVPTGIDFYFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCVEI 244
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PICR++++CLP K A GN+ +V+C++V+N I L+DP L+ + A +WR F S
Sbjct: 245 VPICRDNIVCLPKKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWREPFDS 304
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYV-----LADAQVARVSDFGKNDT-IFSIRTH 362
L +QL E+ VLDVE + + G Y+ LAD + R G +D S RTH
Sbjct: 305 LCGPKQLTEFYVLDVESIDNFERKAGHGYISKKHELADVWLVRSDQVGMSDAQSLSARTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLL+PGD + +D+ + N N+ D +P+ I+++K ++ R R R WKL
Sbjct: 365 LGHLLSPGDLVMAFDMKNCNVNNATFDAMSVDNVPDAIIVRKVFDRSR---RVAKRQWKL 421
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L VD + + + E++ F+ D+EE+ +R I++Y++ +E A DG+
Sbjct: 422 KRL--VVDGNIVGNETASVADEFQGFMEDIEEDALMREKINIYKD-----AEKAVAIDGD 474
Query: 483 DVPSVPLDELLADL--DLKSDDGE 504
D + P LA++ DLK DD E
Sbjct: 475 DDDAHPEAPSLAEMLDDLKFDDDE 498
>gi|195477750|ref|XP_002100295.1| GE16971 [Drosophila yakuba]
gi|194187819|gb|EDX01403.1| GE16971 [Drosophila yakuba]
Length = 521
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/499 (42%), Positives = 305/499 (61%), Gaps = 27/499 (5%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+ + PN ANMCV CLR+ VDITE + K ++ C C+ YLQPP WI+A LE
Sbjct: 25 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQAALE 84
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E+ G +L+Q +VVE+
Sbjct: 85 SRELLAICLKKLKGLKDVKLVDAGFIWTEQHSKRIKVKLTVHGEITGGTVLQQVFVVEFT 144
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q+ MC+ C R +A D W VQ+RQ +++TF+YLEQLILKH A + I G
Sbjct: 145 VQNQMCNDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEHGG 203
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ N +HA + V+F+ + P + K+L+SHD SNN+NYKY +SVEI+P+ ++
Sbjct: 204 LDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIAPVSKDSA 263
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CL K+ LGNL PLV+ +V++SI L+DP T + L + Y+R+ F+++ +QLV
Sbjct: 264 VCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAICNPKQLV 323
Query: 317 EYIVLDVEVV----------SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
EY+V+D++V+ +V+ K+ L D V R S+ G ND R+HLGHL
Sbjct: 324 EYVVMDIDVIMEKDRKTYPGQGQVSF---KHALCDIWVVRASELGINDNPIHTRSHLGHL 380
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
L GD +GY+ AN ND+E DK +P+ IL++K S L S D
Sbjct: 381 LKVGDSVMGYNTGEANINDLEFDKLSTDEIPDVILVRK----------PDSASAPLVSED 430
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PSEMASVTDGEDVP 485
V E+ +Y EFL DLEEN ++R +++YR+ + P E+ + G DVP
Sbjct: 431 ERVKHLAAEATDERSKYDYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEVQAA--GGDVP 488
Query: 486 SVPLDELLADLDLKSDDGE 504
+ L+E+L D+ L+ D E
Sbjct: 489 QITLEEMLEDMTLECADDE 507
>gi|225710644|gb|ACO11168.1| 60S ribosomal export protein NMD3 [Caligus rogercresseyi]
Length = 514
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/490 (42%), Positives = 313/490 (63%), Gaps = 15/490 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CGIP+ PN AN CV CLR++VDITE + K V+++ C C+ L PP WI LE
Sbjct: 14 ILCCQCGIPIDPNPANTCVGCLRTQVDITEDIPKQVVLNFCKFCERCLNPPSQWIACSLE 73
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S++L+ C+KRLK L++V+LV+A F+WTEPHS+RIKVKL VQ EV++GAIL+Q++VVEYV
Sbjct: 74 SRDLMALCLKRLKGLSKVKLVDANFVWTEPHSRRIKVKLSVQGEVISGAILQQTFVVEYV 133
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
+ MCD C RV+A D W A+VQ+RQ ++T +YLEQ+++K++A I + +G
Sbjct: 134 VHNQMCDDCRRVEAK-DTWNASVQVRQKTNQKKTLYYLEQVLIKYNATKDCSGIKVVHEG 192
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFFF + S+A K VEF+G V P+R H K+L+SHD SN +NYKYTFSVE+SPIC++++
Sbjct: 193 LDFFFSSESNARKLVEFLGTVIPIRYHHAKKLISHDTNSNTYNYKYTFSVEVSPICKDNI 252
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLP K+A SLG +G + + KV+N + L+D + + ++A Y+R+ F SL + L
Sbjct: 253 VCLPSKLAHSLGGMGQIALAYKVSNILHLIDFNSCQFAEINATSYFRNPFLSLTGPKSLA 312
Query: 317 EYIVLDVEVVS-------SEVNVGGSKYVLADAQVARVSDFGK-NDTIFSIRTHLGHLLN 368
E+ V+++E++ K+VLAD V + S+ G+ ND RTHLG +L
Sbjct: 313 EFTVMNIEIIPDLERRKFKGQGAISKKHVLADCWVVKSSELGRNNDEGVHCRTHLGRILQ 372
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
GD +G+DL ++N N+ EL++ +P+ +L+KK Y +K +R R + K
Sbjct: 373 IGDSVMGFDLKNSNVNNPELEEISEHKIPDVVLVKKVYAQKSVRNRRR------KWRLRH 426
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
+D G N E +FL D+EE+ ELR +I++Y++ + D ++P V
Sbjct: 427 MDGLHGTKSLCSDNPEMTDFLEDIEEDVELRKHINIYKDPKKLSIPVDQDEDDTEIPGVS 486
Query: 489 LDELLADLDL 498
L E+L L
Sbjct: 487 LAEMLESFSL 496
>gi|308812484|ref|XP_003083549.1| NMD protein affecting ribosome stability and mRNA decay (ISS)
[Ostreococcus tauri]
gi|116055430|emb|CAL58098.1| NMD protein affecting ribosome stability and mRNA decay (ISS)
[Ostreococcus tauri]
Length = 427
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 183/377 (48%), Positives = 266/377 (70%), Gaps = 18/377 (4%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
+VLCC CG+ M PN + MCV C+R++VDITEG+ K ++++C +C+ YLQPP+ WI+A L
Sbjct: 19 TVLCCLCGVGMRPNPSGMCVECVRTQVDITEGISKQCVVTYCSQCERYLQPPKHWIRADL 78
Query: 76 ESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
ESKELLTFC+KR+K L +V+LV+A F+WTEPHSKR+K KL +QKE++ GAIL+Q++V E+
Sbjct: 79 ESKELLTFCIKRIKGLQKVKLVDAGFVWTEPHSKRLKTKLTIQKEIMGGAILQQTFVTEF 138
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
+ + MCD+C+R AN DQW A VQ+RQ V H+RTF +LEQ+ILKH AI I
Sbjct: 139 IVEWRMCDACARTAANSDQWNACVQVRQKVEHKRTFLFLEQMILKHGMERDAIGIKSQPD 198
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
G+DF++ +RSH ++FV+F+G V RSR DKQLVSHD N Y +C+ED
Sbjct: 199 GLDFYYAHRSHGLRFVDFLGNVVATRSRDDKQLVSHDANCNT----YXXXXXXXXVCKED 254
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQL 315
++ LP K++ G +GP+++C +V+N++ DP T+R +LD+++YWR F+ + +++Q+
Sbjct: 255 VVVLPLKLSKEFGLVGPVMLCTRVSNTLQFTDPVTMRPIWLDSEKYWRYPFRPIASAKQM 314
Query: 316 VEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALG 375
+EY+VLD+ V+A+ ++AR SDFG NDT F +RTHLG++L GD A+G
Sbjct: 315 IEYVVLDL--------------VMAEVEIARSSDFGVNDTTFRVRTHLGNILQAGDTAMG 360
Query: 376 YDLYSANNNDMELDKYK 392
YDL S D EL+K +
Sbjct: 361 YDLASLQIVDPELEKSR 377
>gi|357604777|gb|EHJ64316.1| nonsense-mediated mRNA 3 [Danaus plexippus]
Length = 467
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/477 (43%), Positives = 308/477 (64%), Gaps = 21/477 (4%)
Query: 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLN 92
MCVACLR+ VDIT+G+ K + C C+ YLQPP W+ LES+ELL C+KRLK LN
Sbjct: 1 MCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPAEWVTCALESRELLALCLKRLKGLN 60
Query: 93 RVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANP 152
RV+L +A F WTEPHSKRIKVKL VQ EV+ G +L+Q+++VEYV Q MCD+C R +A
Sbjct: 61 RVKLADAGFAWTEPHSKRIKVKLTVQGEVMGGTVLQQTFIVEYVIQHQMCDACHRSEAQ- 119
Query: 153 DQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVE 212
D W A VQ+RQ ++R+TF+YLEQLILKH A + + I G+DFF+ ++A K V+
Sbjct: 120 DYWRALVQVRQRASNRKTFYYLEQLILKHKAHSNTLGIKPKHDGLDFFYATENYARKMVD 179
Query: 213 FVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGP 272
F+ V P++ +H K+L+SHD SN +NYK+TFS+EI P+ ++ ++CLP K+ SLG++ P
Sbjct: 180 FIQSVLPIKCQHSKKLISHDIHSNVYNYKFTFSIEIVPVSKDSIVCLPKKLTQSLGSISP 239
Query: 273 LVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSE--- 329
+ + +VT++I L+D +T + C L + YWR F ++ +QLVEYIV+D++++
Sbjct: 240 ICLVQRVTSTIHLIDAYTGQVCDLSSTMYWRYPFNAICNPKQLVEYIVMDIDILKEHEKK 299
Query: 330 ----VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNND 385
+ +K+V+AD V + S+ G + RTHLGH+L PGD LGY+L +N ND
Sbjct: 300 TFPGQGMVSNKHVVADVWVVKASELGLDVNPIHTRTHLGHILKPGDAVLGYNLGESNVND 359
Query: 386 MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEY 445
LDK ++P+ L+KK Y E+ R+R++ +WKLK + G T + +Y
Sbjct: 360 DNLDKLDRDIIPDVYLVKKHYGERAARRRAR--AWKLKHM-----HEHGST----TDDDY 408
Query: 446 EEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSDD 502
EFL DLEE+P LR NI+++++ + P + + +P + L E+L DL ++ D
Sbjct: 409 NEFLDDLEEDPALRQNINIFKDSNKIPVDTDEI--DPSLPRITLAEMLDDLAIEDVD 463
>gi|6321964|ref|NP_012040.1| Nmd3p [Saccharomyces cerevisiae S288c]
gi|308153577|sp|P38861.3|NMD3_YEAST RecName: Full=60S ribosomal export protein NMD3; AltName:
Full=Nonsense-mediated mRNA decay protein 3
gi|458900|gb|AAB68015.1| Nmd3p: Putative Upf1p interacting protein [Saccharomyces
cerevisiae]
gi|190405947|gb|EDV09214.1| factor required for a late assembly step of the 60S subunit
[Saccharomyces cerevisiae RM11-1a]
gi|207344532|gb|EDZ71647.1| YHR170Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146928|emb|CAY80184.1| Nmd3p [Saccharomyces cerevisiae EC1118]
gi|285810076|tpg|DAA06863.1| TPA: Nmd3p [Saccharomyces cerevisiae S288c]
gi|323348322|gb|EGA82571.1| Nmd3p [Saccharomyces cerevisiae Lalvin QA23]
gi|349578722|dbj|GAA23887.1| K7_Nmd3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298982|gb|EIW10077.1| Nmd3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 518
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/506 (41%), Positives = 313/506 (61%), Gaps = 23/506 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP W
Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQW 71
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI++KL VQ E + I++Q+
Sbjct: 72 IRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQT 131
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I
Sbjct: 132 FEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 190
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI P
Sbjct: 191 SEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVP 250
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A S+GN+ V+C K++N++ +DP TL+ L YWR+ F +L
Sbjct: 251 ICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALA 310
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE+IVLDV+ S+ ++ G VLAD VAR SD G ND ++ +R+HLG + + G
Sbjct: 311 DVTQLVEFIVLDVD--STGISRGNR--VLADITVARTSDLGVNDQVYYVRSHLGGICHAG 366
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D +GY + ++N N D +P+ +L+KK Y+ RK K R WKLK + E
Sbjct: 367 DSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQ----RKSKKSRHWKLKRMAKEHK 422
Query: 431 DSKGRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ---PSEMASV 478
D D E+ K+YE FL++LEE+ ELR +++LY+N++
Sbjct: 423 DIDASLDYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDE 482
Query: 479 TDGEDVPSVPLDELLADLD-LKSDDG 503
+ ED P + +DELL +LD + +DG
Sbjct: 483 DEDEDAPQINIDELLDELDEMTLEDG 508
>gi|365765264|gb|EHN06776.1| Nmd3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 534
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/506 (41%), Positives = 313/506 (61%), Gaps = 23/506 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP W
Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQW 71
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI++KL VQ E + I++Q+
Sbjct: 72 IRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQT 131
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I
Sbjct: 132 FEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 190
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI P
Sbjct: 191 SEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVP 250
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A S+GN+ V+C K++N++ +DP TL+ L YWR+ F +L
Sbjct: 251 ICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALA 310
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE+IVLDV+ S+ ++ G VLAD VAR SD G ND ++ +R+HLG + + G
Sbjct: 311 DVTQLVEFIVLDVD--STGISRGNR--VLADITVARTSDLGVNDQVYYVRSHLGGICHAG 366
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D +GY + ++N N D +P+ +L+KK Y+ RK K R WKLK + E
Sbjct: 367 DSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQ----RKSKKSRHWKLKRMAKEHK 422
Query: 431 DSKGRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ---PSEMASV 478
D D E+ K+YE FL++LEE+ ELR +++LY+N++
Sbjct: 423 DIDASLDYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDE 482
Query: 479 TDGEDVPSVPLDELLADLD-LKSDDG 503
+ ED P + +DELL +LD + +DG
Sbjct: 483 DEDEDAPQINIDELLDELDEMTLEDG 508
>gi|25143170|ref|NP_492114.2| Protein T25G3.3 [Caenorhabditis elegans]
gi|19171243|emb|CAA96689.2| Protein T25G3.3 [Caenorhabditis elegans]
Length = 513
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/516 (41%), Positives = 312/516 (60%), Gaps = 22/516 (4%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
+ TVG + CC+CG+ + PN ANMC CLRS VDITEG+ + I C CD Y PP
Sbjct: 6 IKPTVGLIACCECGVAIEPNPANMCSGCLRSRVDITEGITRQCTIYMCKFCDRYFVPPSA 65
Query: 70 WIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W++A+LESKELL+ C+K+LK L +VRL +A F+WTE HSKRIKVK+ +QKEV IL+
Sbjct: 66 WMRAELESKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQ 125
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q+ VVE+ +CD C R +A D W A VQ+RQ ++T FYLEQL+LKH A
Sbjct: 126 QAVVVEFTVHSQLCDDCRRAEAK-DFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECT 184
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
+ + GIDF+F + A KFV+F+ V P + + ++LVSHD K+N ++YK+TF VEI
Sbjct: 185 GVKPVPTGIDFYFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCVEI 244
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PICR++++CLP K A GN+ +V+C++V+N I L+DP L+ + A +WR F S
Sbjct: 245 VPICRDNIVCLPKKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWREPFDS 304
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYV-----LADAQVARVSDFGKNDT-IFSIRTH 362
L +QL E+ VLDVE V++ G YV LAD + R G +D S RTH
Sbjct: 305 LCGPKQLTEFYVLDVEPVNNFERKAGHGYVSKKHELADVWLVRSDQVGMSDAQSLSARTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
+GHLL+PGD + +D+ + N N+ D +P+ I+++K ++ R R+ R WKL
Sbjct: 365 IGHLLSPGDLVMAFDMKNCNVNNATFDAMNIDNVPDAIIVRKVFDRTR---RTAKRQWKL 421
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L VD + + + E++ F+ D+EE+ +R I++Y++ + P+ D E
Sbjct: 422 KRL--VVDGNIVGNETASVADEFQGFMEDIEEDALMREKINIYKDAEKGPN--VDGDDAE 477
Query: 483 DVPSVP-LDELLADLDL------KSDDGEGDDSMRE 511
D P P L E+L DL +++ E D++M+E
Sbjct: 478 DHPDAPTLAEMLDDLKFDDEEMKEAESAEDDEAMQE 513
>gi|322706779|gb|EFY98359.1| nonsense-mediated mRNA decay protein 3 [Metarhizium anisopliae
ARSEF 23]
Length = 515
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/499 (41%), Positives = 317/499 (63%), Gaps = 21/499 (4%)
Query: 12 QTVGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
QT ++LCC CG P+ A +C C++ VDI++G+Q+ ++ C +CD +L PP +
Sbjct: 18 QTAATILCCNCGAPIDGTTATGALCFNCVKLTVDISQGIQREATLNFCRDCDRWLLPPNS 77
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A ES+ELL C+K+L+ L++VR+V+A F+WTEPHS+RIKVKL +Q V +G +L+Q
Sbjct: 78 WIVAMPESRELLALCLKKLRGLHKVRIVDASFVWTEPHSRRIKVKLTIQDAVQDGVLLQQ 137
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ V YV C C++ + W A VQ+RQ V H+RTF +LEQLI+KH+A +
Sbjct: 138 SFEVVYVVATQQCPECAK-SYTANVWRACVQVRQKVLHKRTFLFLEQLIMKHNAHRDTLN 196
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + GIDFFF ++ A KF++F+ V PV + ++L+S D ++ +YK+++S EI
Sbjct: 197 IKEAKDGIDFFFSQKNQAEKFIDFLNSVVPVTVKASQELISQDVHTSKKSYKFSYSAEIV 256
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PICR+DL+ +P ++A GN+ PLV+C K+ S+ L+DP TL+ + + YWR+ F+SL
Sbjct: 257 PICRDDLVAMPIRLAKQSGNISPLVLCHKIGTSVYLMDPQTLQTADIASPIYWRAPFRSL 316
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ +LVE+I++D+E+ N K+VL++A VAR SD G ND + RTHLG+ L P
Sbjct: 317 ADAHELVEFIIMDIEL----TNTRRGKWVLSEATVARASDLGVNDKTYFTRTHLGNFLQP 372
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD A+GY L N+ E + + +P+ +L+KK Y +R +R +WKL+
Sbjct: 373 GDSAMGYLLTGTMFNNPEYEAIEESNTYSSTIPDVVLVKKHYPRRRKNRRR---NWKLRR 429
Query: 425 LDM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
+ E + + DQ++M++EYE+FLRD+EE+ ELR ++LY+N+ + E SV + E+
Sbjct: 430 MGKDEGELLPKKADQDRMDREYEQFLRDVEEDEELRAAMALYKNEKKRAEEEMSVAETEE 489
Query: 484 -----VPSVPLDELLADLD 497
P V +DELL D D
Sbjct: 490 DEDDGTPQVNMDELLDDFD 508
>gi|224147658|ref|XP_002188713.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Taeniopygia guttata]
Length = 474
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/487 (44%), Positives = 312/487 (64%), Gaps = 40/487 (8%)
Query: 27 APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVK 86
P +++C CLR + ITEG+ K + C +C+ YLQPP TWI+ LES+ELL C+K
Sbjct: 18 VPTPSSLC--CLRLGLSITEGIPKQGTVHFCKQCERYLQPPGTWIQCALESRELLALCLK 75
Query: 87 RLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSC 145
++K +L++VRL++A FIWTEPHSKRIK+KL VQKEV+NGA+L+Q +VVEYV Q MC+ C
Sbjct: 76 KIKASLSKVRLIDAGFIWTEPHSKRIKLKLTVQKEVINGAVLQQVFVVEYVVQSQMCEDC 135
Query: 146 SRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRS 205
R++A D W A VQ+RQ H++TF+YLEQLILKH +RI ++ G+DF++ ++
Sbjct: 136 HRIEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHRLHQNTLRIKEIHDGLDFYYSSKQ 194
Query: 206 HAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAV 265
HA K V+F+ P RS+ ++L+SHD SN +NYK TFSVEI PIC+++++CL PK+A
Sbjct: 195 HAQKMVDFLQSTVPSRSKSSQRLISHDIHSNVYNYKSTFSVEIVPICKDNVVCLSPKLAQ 254
Query: 266 SLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEV 325
SLGN+ + +C++VT++I L+DP TL+ +D + YWR F SL +QL E+I++D+
Sbjct: 255 SLGNMSQICVCIRVTSTIRLIDPRTLQIADIDGNTYWRHPFNSLFHPKQLEEFIIMDINR 314
Query: 326 VSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYS 380
V + G+ K+ LA+A V + S+ + F THLGH+LNPGD LG +L
Sbjct: 315 VHEKKKGAGAGARSVKHTLAEAWVRKTSELDTDHQYFCC-THLGHILNPGDLVLGKEL-- 371
Query: 381 ANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEK 440
L +LIKKSY+ KR + R+WKLK L E D TD E
Sbjct: 372 ---------------LFLQVLIKKSYDRC---KRQRRRNWKLKEL--ERDREATDTDDE- 410
Query: 441 MNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKS 500
++Y++FL DLEE+ +R N+++YRN D P E S TD + P + L E+L DL +
Sbjct: 411 --RQYQDFLEDLEEDEAIRKNVNIYRNADI-PVE--SDTDDDGAPRISLAEMLEDLHISQ 465
Query: 501 D--DGEG 505
D GEG
Sbjct: 466 DATGGEG 472
>gi|341901748|gb|EGT57683.1| hypothetical protein CAEBREN_18901 [Caenorhabditis brenneri]
Length = 511
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/506 (42%), Positives = 307/506 (60%), Gaps = 20/506 (3%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
+ TVG + CC+CG+ + PN ANMC CLRS VDITEG+Q+ I C CD Y PP
Sbjct: 4 LNITPTVGLIACCECGVAIEPNPANMCSGCLRSRVDITEGIQRSCTIYMCKFCDRYFVPP 63
Query: 68 RTWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAI 126
W++A+LESKELL+ C+K+LK L +VRL +A F+WTE HSKRIKVK+ +QKEV I
Sbjct: 64 SAWMRAELESKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTI 123
Query: 127 LEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAAR 186
L+Q+ VVE+ +CD C R +A D W A VQ+RQ ++T FYLEQL+LKH A
Sbjct: 124 LQQAVVVEFTVHSQLCDDCRRAEAK-DFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKD 182
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
+ + GIDFFF + A KFV+F+ V P + + ++LVSHD K+N ++YK+TF V
Sbjct: 183 CTGVKPVPTGIDFFFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCV 242
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
EI PICR++++CLP K A GN+ +V+C++V+N I L+DP L+ + A +WR F
Sbjct: 243 EIVPICRDNIVCLPKKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWREPF 302
Query: 307 KSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYV-----LADAQVARVSDFGKNDT-IFSIR 360
SL +QL E+ VLDVE V + G YV LAD + R G +D S R
Sbjct: 303 DSLCGPKQLTEFYVLDVEPVENLQRSAGHGYVSKKHELADVWLVRSDQVGMSDAQSLSAR 362
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
THLGHLL+PGD + +D+ + N N+ D +P+ I+++K ++ R R+ R W
Sbjct: 363 THLGHLLSPGDLVMAFDMKNCNVNNATFDAMNIDNVPDAIIVRKVFDRSR---RTAKRQW 419
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
KLK L VD + + + E++ F+ D+EE+ +R I++Y++ + P+ TD
Sbjct: 420 KLKRL--VVDGNIVGNETASVADEFQGFMEDIEEDALMREKINIYKDSEKAPN---VETD 474
Query: 481 GEDV-PSVP-LDELLADLDLKSDDGE 504
+D P P L E+L DLK DD E
Sbjct: 475 DDDAHPEAPSLAEMLD--DLKFDDEE 498
>gi|341886241|gb|EGT42176.1| hypothetical protein CAEBREN_15656 [Caenorhabditis brenneri]
Length = 511
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/506 (42%), Positives = 307/506 (60%), Gaps = 20/506 (3%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
+ TVG + CC+CG+ + PN ANMC CLRS VDITEG+Q+ I C CD Y PP
Sbjct: 4 LNITPTVGLIACCECGVAIEPNPANMCSGCLRSRVDITEGIQRSCTIYMCKFCDRYFVPP 63
Query: 68 RTWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAI 126
W++A+LESKELL+ C+K+LK L +VRL +A F+WTE HSKRIKVK+ +QKEV I
Sbjct: 64 SAWMRAELESKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTI 123
Query: 127 LEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAAR 186
L+Q+ VVE+ +CD C R +A D W A VQ+RQ ++T FYLEQL+LKH A
Sbjct: 124 LQQAVVVEFTVHSQLCDDCRRAEAK-DFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKD 182
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
+ + GIDFFF + A KFV+F+ V P + + ++LVSHD K+N ++YK+TF V
Sbjct: 183 CTGVKPVPTGIDFFFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCV 242
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
EI PICR++++CLP K A GN+ +V+C++V+N I L+DP L+ + A +WR F
Sbjct: 243 EIVPICRDNIVCLPKKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWREPF 302
Query: 307 KSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYV-----LADAQVARVSDFGKNDT-IFSIR 360
SL +QL E+ VLDVE V + G YV LAD + R G +D S R
Sbjct: 303 DSLCGPKQLTEFYVLDVEPVENLQRSAGHGYVSKKHELADVWLVRSDQVGMSDAQSLSAR 362
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
THLGHLL+PGD + +D+ + N N+ D +P+ I+++K ++ R R+ R W
Sbjct: 363 THLGHLLSPGDLVMAFDMKNCNVNNATFDAMNIDNVPDAIIVRKVFDRSR---RTAKRQW 419
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
KLK L VD + + + E++ F+ D+EE+ +R I++Y++ + P+ TD
Sbjct: 420 KLKRL--VVDGNIVGNETASVADEFQGFMEDIEEDALMREKINIYKDSEKAPN---VETD 474
Query: 481 GEDV-PSVP-LDELLADLDLKSDDGE 504
+D P P L E+L DLK DD E
Sbjct: 475 DDDAHPEAPSLAEMLD--DLKFDDEE 498
>gi|950224|gb|AAA74491.1| Nmd3p [Saccharomyces cerevisiae]
Length = 518
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/506 (41%), Positives = 312/506 (61%), Gaps = 23/506 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP W
Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQW 71
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK L VRLV+A FIWTEPHS+RI++KL VQ E + I++Q+
Sbjct: 72 IRAELESRELLAICLRRLKGLTFVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQT 131
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I
Sbjct: 132 FEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 190
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI P
Sbjct: 191 SEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVP 250
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A S+GN+ V+C K++N++ +DP TL+ L YWR+ F +L
Sbjct: 251 ICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALA 310
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE+IVLDV+ S+ ++ G VLAD VAR SD G ND ++ +R+HLG + + G
Sbjct: 311 DVTQLVEFIVLDVD--STGISRGNR--VLADITVARTSDLGVNDQVYYVRSHLGGICHAG 366
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D +GY + ++N N D +P+ +L+KK Y+ RK K R WKLK + E
Sbjct: 367 DSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQ----RKSKKSRHWKLKRMAKEHK 422
Query: 431 DSKGRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ---PSEMASV 478
D D E+ K+YE FL++LEE+ ELR +++LY+N++
Sbjct: 423 DIDASLDYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDE 482
Query: 479 TDGEDVPSVPLDELLADLD-LKSDDG 503
+ ED P + +DELL +LD + +DG
Sbjct: 483 DEDEDAPQINIDELLDELDEMTLEDG 508
>gi|354546106|emb|CCE42835.1| hypothetical protein CPAR2_204780 [Candida parapsilosis]
Length = 515
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/498 (45%), Positives = 321/498 (64%), Gaps = 14/498 (2%)
Query: 9 TVPQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
T V +VLCC CG+PM MC C++ VDITEG+ + +S C C+ +LQPP
Sbjct: 12 TASGPVATVLCCNCGVPMDGSQGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPP 71
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
WI+AQLES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI+VKL VQ E + I+
Sbjct: 72 GQWIRAQLESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIV 131
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q++ VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH+A
Sbjct: 132 QQTFEVEYVVIAMQCPDCAK-SYTTNTWRATVQIRQKVPHKRTFLYLEQLILKHNAHMDT 190
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+ I + G+DFF+ ++HA K V+F+ VAPV+ + ++LVS D S + +YK++FS+E
Sbjct: 191 VSIQETKDGLDFFYAQKNHAAKMVDFLTSVAPVKVKKSEELVSTDIHSGSSSYKFSFSIE 250
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I+PICR+DL+ LP K+A S+GN+ LV+C KV N++ +D TL+ L + YWRS F
Sbjct: 251 IAPICRDDLVVLPKKLAHSMGNISRLVLCNKVNNAMQFVDFSTLQTADLSSQVYWRSPFP 310
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
SLL + QLVE+IVLDVE ++ G KYVLAD +V+R SDFG ND F +R+HLG +L
Sbjct: 311 SLLDATQLVEFIVLDVEPTG---DIKG-KYVLADIEVSRASDFGSNDQTFYVRSHLGAIL 366
Query: 368 NPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD- 426
+PGD LGY L ++N N D PE +++KK Y K + +++ K + +
Sbjct: 367 HPGDSCLGYYLTNSNLNSELWDTLDTDNTPEVVIVKKHYARKSKKSKNRKWKLKRMAKEH 426
Query: 427 ---MEVDDSK-GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE---MASVT 479
+ DDS+ R +QEK ++YE FL++LEE+ ELR I++Y+ + QP +
Sbjct: 427 NDIIANDDSRQARQEQEKAERDYELFLQELEEDEELRQTINMYKADEGQPQKNDDDIDEE 486
Query: 480 DGEDVPSVPLDELLADLD 497
D +D P + +DELL +LD
Sbjct: 487 DEDDAPRIAIDELLDELD 504
>gi|254580335|ref|XP_002496153.1| 60S ribosomal export protein NMD3 [Zygosaccharomyces rouxii CBS
732]
gi|238939044|emb|CAR27220.1| ZYRO0C11704p [Zygosaccharomyces rouxii]
Length = 512
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/508 (41%), Positives = 313/508 (61%), Gaps = 27/508 (5%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q +VLCC CG+P+ + MC C++ VDIT+G+ + +S C C+ +LQPP W
Sbjct: 13 QKGATVLCCNCGVPIDGSSGLVMCYDCIKMNVDITDGIPRESHLSFCRNCERFLQPPGQW 72
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+KAQLES+ELL C++RLK L ++RLV+A FIWTEPHS+RI++K+ VQ E + I++QS
Sbjct: 73 VKAQLESRELLAICLRRLKGLTKIRLVDASFIWTEPHSRRIRIKVTVQGEAMMNTIIQQS 132
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VE+V C C++ W AAVQ+RQ V H+RTF +LEQLILKH+A + I
Sbjct: 133 FEVEFVVIAMQCPDCAK-SYTAHTWRAAVQIRQKVPHKRTFLFLEQLILKHNAHVDTVSI 191
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DF++ R+HA+K ++F+ V P+R + ++L+S D +S+ YK+TFSVEI P
Sbjct: 192 REAKDGLDFYYAQRNHAMKMIDFLNSVIPIRYKKSEELISQDIQSSTSTYKFTFSVEIVP 251
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
ICR+DL+ LP K++ SLGN+ V+C +V +SI +DP TL+ + A YWR F SL
Sbjct: 252 ICRDDLVVLPKKLSKSLGNISQFVLCSRVNSSIQFMDPRTLQTADISASVYWRQPFNSLA 311
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
+ QLVE+IVLDVE ++VLAD VA+ SD G ND + +R+HLG + + G
Sbjct: 312 DAGQLVEFIVLDVEPTGE----SRGRFVLADITVAKASDLGSNDQEYYVRSHLGAICHAG 367
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D +GY + +AN N D +P+ +L+KK Y +R KR+ R+WKLK + E
Sbjct: 368 DSVMGYHIGNANYNSDLFDTLDMDRIPDVVLVKKLY--RRTTKRN--RNWKLKRMAKEHK 423
Query: 431 DSKGRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE-----MA 476
D D E+ +YE FL++LEE+ ELR +++LYR+ + P E
Sbjct: 424 DIDASADYSSRQQKQEMERAEMDYETFLQELEEDSELRQSVNLYRSNN--PPEPVNEGDM 481
Query: 477 SVTDGEDVPSVPLDELLADLD-LKSDDG 503
+ E P + +DELL +LD + +DG
Sbjct: 482 DEDEDEATPRINMDELLDELDEMTLEDG 509
>gi|256273979|gb|EEU08897.1| Nmd3p [Saccharomyces cerevisiae JAY291]
Length = 518
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/506 (41%), Positives = 312/506 (61%), Gaps = 23/506 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP W
Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQW 71
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI++KL VQ E + I++Q+
Sbjct: 72 IRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQT 131
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I
Sbjct: 132 FEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 190
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI P
Sbjct: 191 SEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVP 250
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A S+GN+ V+C K++N++ +DP TL+ L YWR+ F +L
Sbjct: 251 ICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALA 310
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE+IVLDV+ S+ ++ G VLAD VAR SD G ND ++ +R+HLG + + G
Sbjct: 311 DVTQLVEFIVLDVD--STGISRGNR--VLADITVARTSDLGVNDQVYYVRSHLGGICHAG 366
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D +GY + ++N N D +P+ +L+KK Y+ RK K R WKLK + E
Sbjct: 367 DSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQ----RKSKKSRHWKLKRMAKEHK 422
Query: 431 DSKGRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ---PSEMASV 478
D D E+ K+YE FL++LEE+ ELR +++LY+N +
Sbjct: 423 DIDASLDYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNCEANVPPEEHEMDE 482
Query: 479 TDGEDVPSVPLDELLADLD-LKSDDG 503
+ ED P + +DELL +LD + +DG
Sbjct: 483 DEDEDAPQINIDELLDELDEMTLEDG 508
>gi|398392165|ref|XP_003849542.1| hypothetical protein MYCGRDRAFT_75941 [Zymoseptoria tritici IPO323]
gi|339469419|gb|EGP84518.1| hypothetical protein MYCGRDRAFT_75941 [Zymoseptoria tritici IPO323]
Length = 519
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/505 (40%), Positives = 322/505 (63%), Gaps = 16/505 (3%)
Query: 13 TVGSVLCCKCG--IPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
T +VLC CG I A +C CL+ +D+T+G+++ I+ C +CD +L PP +W
Sbjct: 20 TSPTVLCYNCGAAIDGTQAAGAICTDCLKLTMDVTQGIERDGILLMCRDCDRWLSPPTSW 79
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ A ES+ELL C+++L+ L++ R+++A FIWTEPHS+RIKVK+ VQ+E + GAIL+Q+
Sbjct: 80 VVAAPESRELLALCLRKLRGLHKTRIIDASFIWTEPHSRRIKVKITVQQEAMQGAILQQT 139
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VE+VQQ C C + + + W + VQ+RQ V H+RTF YLEQLILK A I I
Sbjct: 140 FDVEFVQQYKQCPDCQKSFTH-NTWSSVVQVRQKVPHKRTFLYLEQLILKQGAHKDTINI 198
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ GIDF+F ++ A KF +F+ V PVR++ ++L+S D ++ +YK+TFS E+ P
Sbjct: 199 KEVHNGIDFYFAAKNQAEKFCDFLNSVTPVRTKKAQELISMDTHTSVRSYKFTFSCELVP 258
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LPPK+A ++GN+ PLV+C ++ ++ ++DP TL+ L YWR+ F L
Sbjct: 259 ICKDDLVALPPKLAKAIGNISPLVLCHRIGTAVNVIDPNTLQTADLSTPIYWRTPFAPLA 318
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
+QL+E++V+D+E + +++LA+A V R SD G NDT + IRTHLG +L+ G
Sbjct: 319 DVQQLIEFVVMDIEPIGP----AKGRFLLAEATVCRSSDLGVNDTTYLIRTHLGGILHAG 374
Query: 371 DYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
D A+GY L N+ +E K +P+ IL+KK Y E+R +K + R+WKLK +
Sbjct: 375 DTAMGYLLSGTQFNNPNYEALEESKQYSGTIPDVILVKKHY-ERRKKKSANTRNWKLKRM 433
Query: 426 DMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDY--QPSEMASVTDGE 482
E D K R DQ++ +YE+FL+DLE +PELR +++Y+ + SEM + +
Sbjct: 434 AREEGDMKPRKQDQDRDEIDYEQFLQDLEADPELRAGMNMYKQQRELDAISEMETDDGED 493
Query: 483 DVPSVPLDELLADLDLKSDDGEGDD 507
D +P+D+L+ +++ + + DD
Sbjct: 494 DGLEIPMDQLIDEMEDMGMEEDSDD 518
>gi|154276128|ref|XP_001538909.1| 60S ribosomal export protein NMD3 [Ajellomyces capsulatus NAm1]
gi|150413982|gb|EDN09347.1| nonsense-mediated mRNA decay protein 3 [Ajellomyces capsulatus
NAm1]
Length = 519
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/511 (40%), Positives = 315/511 (61%), Gaps = 34/511 (6%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI++G+Q+ + C +C+ +LQPP
Sbjct: 12 QQTATILCCNCGAPIDGTTSAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQPPSQ 71
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A LES+ELL C+++L+ L++VR+++A FIWTEPHSKRIKVK+ VQ+E G IL+Q
Sbjct: 72 WISAALESRELLALCLRKLRGLSKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTILQQ 131
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
++ VEYV C C++ + + W A VQ+RQ V H+RTF YLEQLILKH+A I
Sbjct: 132 TFEVEYVVASQQCPECAKSYTH-NTWRACVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 190
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + G+DFFF R+HA K V+F+ VAP R + ++L+S D ++ +YK T+SV +
Sbjct: 191 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKITYSVYLI 250
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP +A SL N+ PL +C +V SI+LLDP TL+ + + YWR+ FK++
Sbjct: 251 PICKDDLVALPISLAKSLSNIHPLTLCYRVGTSISLLDPSTLQTADIPSPIYWRTPFKNV 310
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++LVE+IV+D+E V + LA+ VAR SD G NDT + RTHLG +L+
Sbjct: 311 ADVQELVEFIVMDIEPAGRSVG----HFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHV 366
Query: 370 GDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD GY L +N ND +E +P+ +L++K Y RK+ R+W+LK
Sbjct: 367 GDSVKGYLLSGSNFNDTNYEALEQSSVYSSTIPDVVLVRKHYP----RKKKPKRNWRLKR 422
Query: 425 LDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK----------DYQ 471
++ E ++ S + +++++ +++E FLRD+EE+ ELR +LY+ K D
Sbjct: 423 MNREEEEPVASSRKQERDRVEEDFEMFLRDVEEDAELRSTFALYKAKRAKADTGRMEDID 482
Query: 472 PSEMASVTDGE-----DVPSVPLDELLADLD 497
M+ V D E D+P + +DELL D +
Sbjct: 483 HDAMSVVEDDEHGSEDDIPKISMDELLDDFE 513
>gi|401625385|gb|EJS43395.1| nmd3p [Saccharomyces arboricola H-6]
Length = 518
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/503 (41%), Positives = 307/503 (61%), Gaps = 23/503 (4%)
Query: 15 GSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKA 73
++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP WI+A
Sbjct: 15 ATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRA 74
Query: 74 QLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
+LES+ELL C++RLK L +VRL++A FIWTEPHS+RI+VKL VQ E + I++Q++ V
Sbjct: 75 ELESRELLAICLRRLKGLTKVRLIDASFIWTEPHSRRIRVKLTVQGEAMTNTIIQQTFEV 134
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
EY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I++
Sbjct: 135 EYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISES 193
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI PIC+
Sbjct: 194 RDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPICK 253
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
+DL+ LP K+A S+GN+ V+C K++N++ +DP TL+ L YWR F SL
Sbjct: 254 DDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRVPFGSLADVS 313
Query: 314 QLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYA 373
QLVE+IVLDV+ + VLAD +AR SD G ND ++ R+HLG + + GD
Sbjct: 314 QLVEFIVLDVD----STGISKGNRVLADITIARTSDLGVNDQVYYTRSHLGGICHAGDSV 369
Query: 374 LGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSK 433
+GY + ++N N D +P+ +L+KK Y+ RK K R WKLK + E D
Sbjct: 370 MGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQ----RKSKKSRHWKLKRMAKEHKDID 425
Query: 434 GRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNK-DYQPS--EMASVTDG 481
D E+ K+YE FL++LEE+ ELR +++LY+N+ P+ +
Sbjct: 426 ASVDYSSRVQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNQVATAPAEEHEMDEDED 485
Query: 482 EDVPSVPLDELLADLD-LKSDDG 503
ED P + +DELL +LD + DDG
Sbjct: 486 EDAPQINIDELLDELDEMTLDDG 508
>gi|151944116|gb|EDN62409.1| conserved protein [Saccharomyces cerevisiae YJM789]
Length = 518
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/506 (41%), Positives = 312/506 (61%), Gaps = 23/506 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP W
Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQW 71
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI++KL VQ E + I++Q+
Sbjct: 72 IRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQT 131
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I
Sbjct: 132 FEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 190
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI P
Sbjct: 191 SEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVP 250
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A S+GN+ V+ K++N++ +DP TL+ L YWR+ F +L
Sbjct: 251 ICKDDLVVLPKKLAKSMGNISQFVLSSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALA 310
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE+IVLDV+ S+ ++ G VLAD VAR SD G ND ++ +R+HLG + + G
Sbjct: 311 DVTQLVEFIVLDVD--STGISRGNR--VLADITVARTSDLGVNDQVYYVRSHLGGICHAG 366
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D +GY + ++N N D +P+ +L+KK Y+ RK K R WKLK + E
Sbjct: 367 DSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQ----RKSKKSRHWKLKRMAKEHK 422
Query: 431 DSKGRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ---PSEMASV 478
D D E+ K+YE FL++LEE+ ELR +++LY+N++
Sbjct: 423 DIDASLDYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDE 482
Query: 479 TDGEDVPSVPLDELLADLD-LKSDDG 503
+ ED P + +DELL +LD + +DG
Sbjct: 483 DEDEDAPQINIDELLDELDEMTLEDG 508
>gi|365760298|gb|EHN02028.1| Nmd3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840617|gb|EJT43364.1| NMD3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 518
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/506 (41%), Positives = 310/506 (61%), Gaps = 23/506 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP W
Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQW 71
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI+VKL VQ E + I++Q
Sbjct: 72 IRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRVKLTVQGEAMTNTIIQQI 131
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEYV C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I
Sbjct: 132 FEVEYVVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 190
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI P
Sbjct: 191 SEARDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVP 250
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A S+ ++ V+C K++N++ +DP TL+ L YWR+ F +L
Sbjct: 251 ICKDDLVVLPKKLAKSMSDISQFVLCSKISNTVQFMDPTTLQIADLSPSVYWRTPFNALA 310
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE+IVLDV+ S+ ++ G VLAD +AR SD G ND ++ R+HLG + + G
Sbjct: 311 DVTQLVEFIVLDVD--STGISRGNR--VLADITIARTSDLGVNDQVYYTRSHLGGICHAG 366
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D +GY + ++N N D +P+ +L+KK Y+ RK K R WKLK + E
Sbjct: 367 DSVMGYFVANSNYNSDLFDGLNIDYVPDVVLVKKLYQ----RKSKKSRHWKLKRMAKEHK 422
Query: 431 DSKGRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQP---SEMASV 478
D D E+ K+YE FL++LEE+ ELR +++LY+N+
Sbjct: 423 DIDASLDYSSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNRVADAPTEEHEMDE 482
Query: 479 TDGEDVPSVPLDELLADLDLKS-DDG 503
+ ED P + +DELL +LD+ + DDG
Sbjct: 483 DEDEDAPQINIDELLDELDVMTLDDG 508
>gi|396464988|ref|XP_003837102.1| similar to nonsense-mediated mRNA decay protein 3 [Leptosphaeria
maculans JN3]
gi|312213660|emb|CBX93662.1| similar to nonsense-mediated mRNA decay protein 3 [Leptosphaeria
maculans JN3]
Length = 516
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/519 (40%), Positives = 321/519 (61%), Gaps = 31/519 (5%)
Query: 1 MAQDAGM-FTV-PQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISH 56
M D+G+ FT P+ ++LC CG + N A C C++ + D+T G+Q+ I+
Sbjct: 1 MEVDSGIAFTAAPKNAATILCADCGAAVDGTLNGA-FCYDCIKLKTDVTGGIQREAILLM 59
Query: 57 CPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLK 116
C +CD +L PP +W+ A ES+ELL C+K+L+ LN++R+++A FIWTEPHS+RIKVK+
Sbjct: 60 CRDCDRWLSPPTSWVVAHPESRELLALCLKKLRGLNKLRIIDASFIWTEPHSRRIKVKIT 119
Query: 117 VQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQ 176
VQ E+ GAI++Q++ VEY Q C C++ + + W A VQ+RQ V H+RTF YLEQ
Sbjct: 120 VQSELNEGAIMQQTFEVEYTQNYQQCPDCAKSYTH-NTWRACVQVRQKVPHKRTFLYLEQ 178
Query: 177 LILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSN 236
LILKH A I I ++ GIDFFF R+HAV F +F+ V PV + ++L+SHD ++
Sbjct: 179 LILKHAAHKDTINIKEVHDGIDFFFAQRNHAVAFCDFLKAVIPVNVKRSEELISHDIHTS 238
Query: 237 NFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFL 296
NYK++FS +I PIC++DL+ LP +A +GN+ PL +C ++ SI LLDP TL+ +
Sbjct: 239 TKNYKFSFSCDIVPICKDDLVVLPIPLAKKIGNIAPLTLCTRIGTSIQLLDPATLQTADV 298
Query: 297 DADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTI 356
D YWR+ F+ L ++L E+IVLD++ + +V K+ LA+A VAR SD G NDT
Sbjct: 299 ATDVYWRTPFRPLADVQELTEFIVLDIDPLGKQV----GKHFLAEATVARASDMGLNDTT 354
Query: 357 FSIRTHLGHLLNPGDYALGYDLYSANNNDMELD------KYKGLVLPETILIKKSYEEKR 410
+ RTHLG +L+ GD +GY L + N N D KY + P+ +L+KK Y+ R
Sbjct: 355 YYCRTHLGGILHVGDSVMGYLLSNTNFNSELFDVLESNNKYASQI-PDVMLVKKFYQ--R 411
Query: 411 LRKRSKPRSWKLKSLDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLY---- 465
+K R+W++K ++ E + R DQ +M K++E FL+D+EE+ ELR ++LY
Sbjct: 412 SKKNKNKRNWRVKRMNKEEGEMLPRKQDQARMEKDFEMFLQDVEEDEELRATMALYKAQQ 471
Query: 466 ----RNKDYQPSEMASVT---DGEDVPSVPLDELLADLD 497
R +D + S + +D ++P+++LL D +
Sbjct: 472 EQKQRERDVDAMDTESTMGDDEDDDGLAIPMEQLLDDFE 510
>gi|261200437|ref|XP_002626619.1| 60S ribosomal export protein NMD3 [Ajellomyces dermatitidis
SLH14081]
gi|239593691|gb|EEQ76272.1| nonsense-mediated mRNA decay protein 3 [Ajellomyces dermatitidis
SLH14081]
gi|239607431|gb|EEQ84418.1| nonsense-mediated mRNA decay protein 3 [Ajellomyces dermatitidis
ER-3]
Length = 528
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/464 (42%), Positives = 295/464 (63%), Gaps = 19/464 (4%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI++G+Q+ + C +C+ +LQPP
Sbjct: 20 QQTATILCCNCGAPIDGTTSAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQPPSQ 79
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A LES+ELL C+++L+ L +VR+++A FIWTEPHSKRIKVK+ VQ+E G IL+Q
Sbjct: 80 WISATLESRELLALCLRKLRGLGKVRIIDAGFIWTEPHSKRIKVKITVQQEAFEGTILQQ 139
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
++ VEYV C C++ P+ W AAVQ+RQ V H+RTF YLEQLILKH+A I
Sbjct: 140 TFEVEYVVASQQCSECAK-SYTPNTWRAAVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 198
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + G+DFFF R+HA K V+F+ VAP R + ++L+S D ++ +YK ++SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKISYSVYLV 258
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP +A SLGN+ PL +C +V SI+LLDP TL+ + + YWR+ FK +
Sbjct: 259 PICKDDLVALPISLAKSLGNIHPLTLCYRVGTSISLLDPATLQTADIPSPIYWRTPFKGV 318
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++LVE+IV+D+E V + LA+ VAR SD G NDT + RTHLG +L+
Sbjct: 319 ADVQELVEFIVMDIEPAGRSVG----HFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHV 374
Query: 370 GDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD GY L +N ND +E +P+ IL++K Y RK+ R+W+LK
Sbjct: 375 GDSVKGYLLSGSNFNDANYEALEQSHTYSSTIPDVILVRKHYP----RKKKPKRNWRLKR 430
Query: 425 LDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLY 465
++ E ++ S + ++++ +++E FLRD+EE+ ELR +LY
Sbjct: 431 MNREEEEAAASSRKQERDRAEEDFEMFLRDVEEDKELRSTFALY 474
>gi|452838727|gb|EME40667.1| hypothetical protein DOTSEDRAFT_157503 [Dothistroma septosporum
NZE10]
Length = 520
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/497 (41%), Positives = 321/497 (64%), Gaps = 20/497 (4%)
Query: 13 TVGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
T +VLC CG P+ A +C CLR +IT +++ ++ C +CD + PP +W
Sbjct: 17 TQATVLCYNCGAPIDGTQAGGALCSDCLRLTTNITSSIERDSVLHMCRDCDRWHSPPTSW 76
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ A ES+ELL C+++L+ LN+ R+++A FIWTEPHS+RIKVK+ VQ+E G IL+Q+
Sbjct: 77 VVAPPESRELLALCLRKLRGLNKTRIIDASFIWTEPHSRRIKVKITVQQEAGEGTILQQT 136
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VE+VQQ C C++ + + W A VQ+RQ V H+RTF YLEQLILK A I I
Sbjct: 137 FDVEFVQQYKQCPDCAKSYTH-NTWRANVQVRQKVPHKRTFLYLEQLILKQGAHKETINI 195
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ GIDF+FG R+HA FV+F+G VAPV+++ ++L+S D +++ +YK+++S E+ P
Sbjct: 196 KEVQNGIDFYFGQRNHAEAFVDFLGSVAPVKTKKSQELISMDVHTSSKSYKFSYSCELVP 255
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A +GN+ PLV+C ++ ++ LDP TL+ L YWR+ F L
Sbjct: 256 ICKDDLVALPLKIAKQIGNIVPLVLCYRIGTAVNFLDPNTLQIADLSTPIYWRAPFTPLA 315
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
++L E++++D+E + +V +++LA+A VAR SD G NDT ++IRTHLG++L PG
Sbjct: 316 DVQELREFVIMDIEPIGPQV----GRFLLAEATVARASDLGVNDTTYNIRTHLGNILKPG 371
Query: 371 DYALGYDLYSANNNDMELD------KYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
D A+GY L N++ + +Y G + P+ IL+KK Y E+R K R+WKLK
Sbjct: 372 DSAMGYHLTGTQFNNLNFEAIEESKQYSGQI-PDVILVKKHY-ERRKNKGPSNRNWKLKR 429
Query: 425 LDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
+ E D K R DQ++ +YE+FL+DLE +PELR +++Y+ + + E TDGED
Sbjct: 430 MAREESDMKPRKQDQDRDEIDYEQFLQDLEADPELRHGLNMYKTQVQRGIEEME-TDGED 488
Query: 484 VP---SVPLDELLADLD 497
+P+D+L+ +++
Sbjct: 489 NDDGLEIPMDQLIDEME 505
>gi|344303871|gb|EGW34120.1| nonsense-mediated mRNA decay protein 3 [Spathaspora passalidarum
NRRL Y-27907]
Length = 516
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 225/493 (45%), Positives = 319/493 (64%), Gaps = 14/493 (2%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG+PM MC C++ VDITEG+ + +S C C+ +LQPP WI+
Sbjct: 18 VATVLCCNCGVPMDGSQGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPGQWIR 77
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A+LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI+VKL VQ E + I++Q++
Sbjct: 78 AELESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIVQQTFE 137
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C++ + W AAVQ+RQ V H+RTF YLEQLILKH+A I I +
Sbjct: 138 VEYVVIAMQCPDCAKSYTT-NTWRAAVQIRQKVPHKRTFLYLEQLILKHNAHVDTISIQE 196
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HA K ++F+ VAPV+++ ++LVS D S + YK++FSVEI+PIC
Sbjct: 197 SKDGLDFFYSQKNHAAKMLDFLSAVAPVKAKKSEELVSTDIHSGSSQYKFSFSVEIAPIC 256
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A SLGN+ LV+C KVTNSI +DP TL+ L Y+RS F SLL +
Sbjct: 257 RDDLVVLPKKLAHSLGNISRLVLCSKVTNSIQFIDPNTLQIADLSPSIYYRSPFPSLLDA 316
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QLVE+IVLDVE ++ G K+VLAD +V+R +D G ND F +RTHLG +L+PGD
Sbjct: 317 TQLVEFIVLDVEPTG---DIRG-KHVLADIEVSRAADMGVNDQSFYVRTHLGGILHPGDS 372
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME---- 428
+GY L + N N D +PE +++KK Y K + + + K + + +
Sbjct: 373 CMGYYLTNTNFNSDLWDTLDSDNIPEVVIVKKHYARKNKKNKYRKWKLKRMAREHQDIVA 432
Query: 429 VDDSK-GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE---MASVTDGEDV 484
DDS+ + +QE+ ++YE FL++LEE+ ELR I+LY+ + P + + ED
Sbjct: 433 NDDSRQAKQEQERAERDYELFLQELEEDEELRQTINLYKAGENAPVKSHGDDEDEEDEDA 492
Query: 485 PSVPLDELLADLD 497
P + +DELL +LD
Sbjct: 493 PEIGIDELLDELD 505
>gi|393909661|gb|EFO25985.2| NMD3 family protein [Loa loa]
Length = 500
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/492 (41%), Positives = 307/492 (62%), Gaps = 12/492 (2%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG + PNA NMCVAC+RS +DITEG+ K C C +L PP W+ A+
Sbjct: 12 GKILCCQCGTSIEPNAMNMCVACVRSRIDITEGIPKQSRAFMCKFCSRWLIPPNGWVNAE 71
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
ESKE+L +K+LK + RVRL++A F+WTEPHSKR+K+KL +Q EVL GA+L+Q ++V
Sbjct: 72 RESKEMLAILLKKLKPTMTRVRLIDASFVWTEPHSKRVKLKLTIQSEVLTGAVLQQIFIV 131
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
E++ + MCD C R +A D W A VQ+RQ ++T FYLEQL+LK+ A I +
Sbjct: 132 EFIVINQMCDDCRRAEAK-DFWRACVQVRQKCEFKKTLFYLEQLVLKYGAHVSTTAIKPV 190
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DFF+ A KFV+F+ P R + ++LV+HD K+N ++YK+TF VE+ PIC
Sbjct: 191 PTGVDFFYAKLQDARKFVDFITSHLPCRYSYAQELVTHDVKNNTYDYKHTFCVEVVPICH 250
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
DL+CLP K+A +LGN+ LV+C +V I+++D TL+ +++ QYWR F++L S+
Sbjct: 251 GDLVCLPKKIAQALGNMNQLVVCFRVNTVISVIDSNTLQIADINSVQYWRDPFQALCQSK 310
Query: 314 QLVEYIVLDVEVVSSEVNVG----GSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+L E+ V++VE + ++ +K+ L D V + G+++ R+HLGHLL P
Sbjct: 311 RLSEFYVMNVEDIDIQLRGTYSHLSTKHRLVDIWVVPSNQIGQDNQEVCTRSHLGHLLKP 370
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD LGYDL S+N N LD+ K +P+ IL++K Y+ ++R+ +W+LK L +
Sbjct: 371 GDLVLGYDLRSSNVNSTLLDEMKRDRIPDIILVRKVYDRSIRQERN---NWELKRL---I 424
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPL 489
+ D M E+E+FL DLEE+ +++ ++ YRN Q + + E PL
Sbjct: 425 QNDGDVCDSSFMENEFEDFLEDLEEDEQMKQKVNFYRNSAKQQTVCSKNIALELPLGPPL 484
Query: 490 DELLADLDLKSD 501
E++ +LDL +D
Sbjct: 485 HEMMDNLDLNTD 496
>gi|327352420|gb|EGE81277.1| nonsense-mediated mRNA decay protein 3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 528
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/464 (42%), Positives = 295/464 (63%), Gaps = 19/464 (4%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI++G+Q+ + C +C+ +LQPP
Sbjct: 20 QQTATILCCNCGAPIDGTISAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQPPSQ 79
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A LES+ELL C+++L+ L +VR+++A FIWTEPHSKRIKVK+ VQ+E G IL+Q
Sbjct: 80 WISATLESRELLALCLRKLRGLGKVRIIDAGFIWTEPHSKRIKVKITVQQEAFEGTILQQ 139
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
++ VEYV C C++ P+ W AAVQ+RQ V H+RTF YLEQLILKH+A I
Sbjct: 140 TFEVEYVVASQQCSECAK-SYTPNTWRAAVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 198
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + G+DFFF R+HA K V+F+ VAP R + ++L+S D ++ +YK ++SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKISYSVYLV 258
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP +A SLGN+ PL +C +V SI+LLDP TL+ + + YWR+ FK +
Sbjct: 259 PICKDDLVALPISLAKSLGNIHPLTLCYRVGTSISLLDPATLQTADIPSPIYWRTPFKGV 318
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++LVE+IV+D+E V + LA+ VAR SD G NDT + RTHLG +L+
Sbjct: 319 ADVQELVEFIVMDIEPAGRSVG----HFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHV 374
Query: 370 GDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD GY L +N ND +E +P+ IL++K Y RK+ R+W+LK
Sbjct: 375 GDSVKGYLLSGSNFNDANYEALEQSHTYSSTIPDVILVRKHYP----RKKKPKRNWRLKR 430
Query: 425 LDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLY 465
++ E ++ S + ++++ +++E FLRD+EE+ ELR +LY
Sbjct: 431 MNREEEEAAASSRKQERDRAEEDFEMFLRDVEEDKELRSTFALY 474
>gi|350422983|ref|XP_003493349.1| PREDICTED: 60S ribosomal export protein NMD3-like [Bombus
impatiens]
Length = 503
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/488 (44%), Positives = 311/488 (63%), Gaps = 17/488 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC CGI + PN ANMCVACLR++VD+TE + K I C C+ YLQPP WI A LE
Sbjct: 14 ILCCICGIGIEPNPANMCVACLRTQVDVTENIPKQATIYFCKGCERYLQPPAEWIHAALE 73
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELLT C+K+LK LNRV+L++A F+WTEPHS R+KVKL VQ EV+ G +L+Q +VVEY
Sbjct: 74 SRELLTLCLKKLKGLNRVKLIDAGFVWTEPHSMRLKVKLTVQAEVMGGTVLQQVFVVEYT 133
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MC+ C R +A D W A VQ+RQ T+++TF+YLEQLILK+ A + + I + +G
Sbjct: 134 VNHQMCNDCHRTEAK-DYWRALVQVRQRATNKKTFYYLEQLILKYRAHEQTLGIKPIHEG 192
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ N + A K V+F+ + P R H K+L+SHD SN +NYK T+SVEI PI R+ +
Sbjct: 193 LDFFYANEASARKMVDFLSSIIPCRYDHSKKLISHDIHSNIYNYKVTYSVEIVPISRDSI 252
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLP K++ LG + + + K+TN + L+D T + L A YWR +F S+ +QL+
Sbjct: 253 VCLPRKLSHQLGGINSICLVYKITNFVHLIDVSTGQIAELSATLYWRHTFNSICDPKQLI 312
Query: 317 EYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY V+D+E + + +K+V+AD V R D G + + RTHLGH+L P
Sbjct: 313 EYTVMDIEQIKFKDRKFFPGQGTISNKHVIADVWVVRSCDLGLTENLIHTRTHLGHILKP 372
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD LGY L +N ND + V+P+ IL KK+Y + R +R R WKLK + +
Sbjct: 373 GDTVLGYALNDSNINDENFEMLNKDVVPDVILTKKNYTQDRAARRRM-RDWKLKHMIQDK 431
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN-KDYQPSEMASVTDGEDVPSVP 488
D+ TD N +Y EFL DLEE+PE+R +I++Y++ + P + ++D + P +
Sbjct: 432 DNMA--TD----NNDYYEFLEDLEEDPEMRQHINIYKDSRKLIPVDTNELSD-PNCPQIT 484
Query: 489 LDELLADL 496
L+E+L DL
Sbjct: 485 LEEMLDDL 492
>gi|403217918|emb|CCK72410.1| hypothetical protein KNAG_0K00420 [Kazachstania naganishii CBS
8797]
Length = 512
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/487 (41%), Positives = 306/487 (62%), Gaps = 24/487 (4%)
Query: 3 QDAGMFTVPQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
Q M V + V ++LCC+CG P+ MC C+R +VDITEG+ K +S C +C+
Sbjct: 7 QSTAMTDVGKKVNTLLCCECGTPIDGSTGLVMCHDCIRLKVDITEGIPKESNLSFCRDCE 66
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
+LQPP W++A+LES+ELL C+KRLK +++VR V+A FIWTEPHS+RIKVK+ VQ E
Sbjct: 67 RFLQPPGQWVRAKLESRELLAICMKRLKGISKVRFVDASFIWTEPHSRRIKVKVTVQGEA 126
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
+ +++Q++ VEY C C++ + W A VQ+RQ V H+RTF YLEQLILKH
Sbjct: 127 MMNVVVQQTFQVEYFVNAMQCPDCAK-SFTKNTWTAKVQVRQKVAHKRTFLYLEQLILKH 185
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
+A I I + GIDFF+G ++HAVK V+F+ V P++ + ++LVS D + + +YK
Sbjct: 186 NAHVDTISIEEAKDGIDFFYGQKNHAVKMVDFINSVMPIKYKRSEELVSQDSHTGSSSYK 245
Query: 242 YTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQY 301
+++S+E+ PIC++DL+ LP +VA S+GN+ V+C KV+N++ LDP TL+ L A +
Sbjct: 246 FSYSIELVPICKDDLVVLPKRVAKSMGNITRFVLCSKVSNTVQFLDPVTLQTGELHAATF 305
Query: 302 WRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRT 361
WR F SL S QLVE+IVLDVE+ G++ V A+ VAR SD G+ND + +R+
Sbjct: 306 WREPFPSLADSSQLVEFIVLDVELTG---RTEGNR-VQAEITVARASDLGQNDQEYYVRS 361
Query: 362 HLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKP-RSW 420
HLG + + GD +GY + ++N N D+ +P+ +L+KK +L+ +SK R W
Sbjct: 362 HLGGICHAGDSVMGYFIANSNYNSDLFDELPYDQVPDVVLVKKL----QLKNKSKKNRKW 417
Query: 421 KLKSLDMEVDDSKG-------------RTDQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
KLK + E +++ + D E+ ++YE FL LE++ ELR N++ YR
Sbjct: 418 KLKRMAKEHNEAAQVQGHGHDHSNRAEKQDMERAERDYELFLEQLEDDDELRNNVNFYRA 477
Query: 468 KDYQPSE 474
++ +E
Sbjct: 478 EEQADAE 484
>gi|400601862|gb|EJP69487.1| NMD3 family protein [Beauveria bassiana ARSEF 2860]
Length = 514
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/494 (40%), Positives = 307/494 (62%), Gaps = 18/494 (3%)
Query: 15 GSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
++LCC CG P+ +A +C C++ +DI++G+Q+ I+ C +C+ +L PP +W+
Sbjct: 21 ATILCCNCGAPIDGTTSAGALCYDCVKLTIDISQGVQREATINFCRDCNRWLLPPSSWVV 80
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A ES+ELL C+K+L+ LN+VR+V+A F+WTEPHS+RIKVKL +Q EV +G +L+QS+
Sbjct: 81 AAPESRELLALCLKKLRGLNKVRIVDASFVWTEPHSRRIKVKLTIQDEVQDGIMLQQSFE 140
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
V Y+ C C++ + W A VQ+RQ V H+RTF +LEQLI+KH A + I +
Sbjct: 141 VVYIVATQQCPECAK-SYTANVWRACVQVRQKVLHKRTFLFLEQLIMKHGAHRDTLNIKE 199
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
GIDFFF ++ A KF++F+ V PV + ++L+SHD + +YK+T+S E+ PIC
Sbjct: 200 AKDGIDFFFSQKNQAEKFIDFLNSVVPVTVKTSQELISHDTHTAKTSYKFTYSAELVPIC 259
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
++DL+ +P ++A GN+ PLV+C K+ SI L+DP TL+ + YWR+ F SL S
Sbjct: 260 KDDLVAMPIRLAKQAGNITPLVLCHKIGTSIYLMDPQTLQTADISCPIYWRAPFTSLADS 319
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
LVE+IV+D+E+ K+ L + VAR D G NDT + RTHLG LL GD
Sbjct: 320 HSLVEFIVMDIELTGKT----NGKWRLGEVTVARAVDLGANDTTYFTRTHLGGLLQAGDS 375
Query: 373 ALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
+GY L +N N+ ME +LP+ +L+KK Y ++ K+ + ++ +
Sbjct: 376 VMGYMLTGSNYNNAEWEAMEESNVYSSMLPDVVLVKKHYPNRKKNKKRNWKLRRMAKDEG 435
Query: 428 EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE---MASVTDGE-D 483
E+ K DQE+M++EYE+FLRD+EE+ +LR ++LY+++ + E MA DGE D
Sbjct: 436 ELLPRKA--DQERMDREYEQFLRDVEEDEDLRAAMALYKSEKQREEEEMSMAETEDGEDD 493
Query: 484 VPSVPLDELLADLD 497
P V + ELL + D
Sbjct: 494 SPQVDMGELLDEFD 507
>gi|255721895|ref|XP_002545882.1| nonsense-mediated mRNA decay protein 3 [Candida tropicalis
MYA-3404]
gi|240136371|gb|EER35924.1| nonsense-mediated mRNA decay protein 3 [Candida tropicalis
MYA-3404]
Length = 516
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 229/504 (45%), Positives = 320/504 (63%), Gaps = 19/504 (3%)
Query: 3 QDAGMFTVPQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
QD G + +VLCC CG+PM MC C++ VDITEG+ + +S C C+
Sbjct: 12 QDGGA-----QMATVLCCNCGVPMDGSQGLVMCYDCIKLNVDITEGIPREANVSFCRNCE 66
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
+LQPP WIKAQLES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI+VKL VQ E
Sbjct: 67 RFLQPPGQWIKAQLESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEA 126
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
+ I++Q++ VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH
Sbjct: 127 MANTIVQQTFEVEYVVIAMQCPDCAK-SYTTNTWRATVQIRQKVPHKRTFLYLEQLILKH 185
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
+A + I + G+DFF+ ++HA K V+F+ VAP++ + ++LVS D S + +YK
Sbjct: 186 NAHVDTVSIQESRDGLDFFYAQKNHAAKMVDFLQAVAPIKVKKSEELVSMDIHSGSSSYK 245
Query: 242 YTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQY 301
+++SVEI+PICR+DL+ LP K+A S+GN+ LV+C KVTNSI +D TL+ L A Y
Sbjct: 246 FSYSVEIAPICRDDLVVLPKKLAHSMGNISRLVLCNKVTNSIQFIDSNTLQIADLSAPVY 305
Query: 302 WRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRT 361
+RS F SLL + QLVE++VLDVE ++ G KYVLAD +V R SD G ND F +RT
Sbjct: 306 FRSPFPSLLDATQLVEFVVLDVEPTG---DIRG-KYVLADIEVCRASDMGSNDQSFYVRT 361
Query: 362 HLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWK 421
HLG +L+PGD LGY L + N N D P+ +++KK Y K + +++ K
Sbjct: 362 HLGGILHPGDSCLGYYLSNTNLNSDLWDTLDTDNTPDVVIVKKHYARKSKKSKNRKWKLK 421
Query: 422 LKSLD----MEVDDSK-GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE-- 474
+ + + DDS+ R +QEK ++YE FL++LEE+ ELR I+LY+ + P +
Sbjct: 422 RMAREHNDIVANDDSRQARQEQEKAERDYELFLQELEEDEELRQTINLYKAGEEAPRKEV 481
Query: 475 -MASVTDGEDVPSVPLDELLADLD 497
D ED P + +DELL +LD
Sbjct: 482 DEMDDEDDEDAPEIAIDELLDELD 505
>gi|170584344|ref|XP_001896961.1| NMD3 family protein [Brugia malayi]
gi|158595650|gb|EDP34189.1| NMD3 family protein [Brugia malayi]
Length = 501
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/493 (43%), Positives = 309/493 (62%), Gaps = 13/493 (2%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG + PNA NMC+AC+RS +DITEG+ K C C+ +L PP W+ A+
Sbjct: 12 GKILCCQCGASIEPNAMNMCIACVRSRIDITEGIPKQYRAFMCKFCNRWLIPPNGWLHAE 71
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
ESKELL+ +K+LK + +VRL +A F+WTEPHSKR+K+KL +QKEVL GA+L+Q ++V
Sbjct: 72 RESKELLSILLKKLKPTMTKVRLTDASFLWTEPHSKRVKLKLTIQKEVLTGAVLQQVFIV 131
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
E++ + MCD C R +A D W A VQ+RQ ++T FYLEQL+LKH A I +
Sbjct: 132 EFIVMNQMCDDCRRAEAK-DFWRACVQVRQKCEFKKTLFYLEQLVLKHSAHLNTTTIKPV 190
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DFF+ A KF++F+ P R + ++LV+HD KSN ++YK+TF VE+ PICR
Sbjct: 191 PTGVDFFYAKLQDARKFIDFITSHLPCRYSYAQELVTHDAKSNIYDYKHTFCVEVVPICR 250
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
DL+CLP K A +LGN+ LV+C++V I ++DP TL+ ++A QYWR F++L S+
Sbjct: 251 GDLVCLPKKTAQALGNMNQLVVCLRVNTVITVIDPSTLQMADINATQYWRDPFQTLCQSK 310
Query: 314 QLVEYIVLDVEVVSS-EVNVGGS----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
+L ++ V+DVE + ++ G S K+ LAD V + G+ + R+HLGHLL
Sbjct: 311 RLNQFYVVDVEDIDFIQLTAGCSHLSTKHRLADIWVVPSNQIGQENQEVCTRSHLGHLLK 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LGYDL S+N N LD + + + IL++K Y+ ++R R+WKLK L
Sbjct: 371 PGDLVLGYDLRSSNVNSALLDDMRTDRIADIILVRKVYDRSIRQER---RNWKLKRL--- 424
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
+ + D M E+E FL DLEE+ ++R I++YR+ Q + + + P
Sbjct: 425 IQNDGDVYDSSSMENEFENFLEDLEEDEQMRQKINIYRDNAKQQAAYSKDIASDLPPGPS 484
Query: 489 LDELLADLDLKSD 501
L E+L DLDL +D
Sbjct: 485 LHEMLDDLDLNAD 497
>gi|340727431|ref|XP_003402047.1| PREDICTED: 60S ribosomal export protein NMD3-like [Bombus
terrestris]
Length = 503
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/488 (44%), Positives = 311/488 (63%), Gaps = 17/488 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC CGI + PN ANMCVACLR++VD+TE + K I C C+ YLQPP WI A LE
Sbjct: 14 ILCCICGIGIEPNPANMCVACLRTQVDVTENIPKQATIYFCKGCERYLQPPAEWIHAALE 73
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELLT C+K+LK LNRV+L++A F+WTEPHS R+KVKL VQ EV+ G +L+Q ++VEY
Sbjct: 74 SRELLTLCLKKLKGLNRVKLIDAGFVWTEPHSMRLKVKLTVQAEVMGGTVLQQVFIVEYT 133
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MC+ C R +A D W A VQ+RQ T+++TF+YLEQLILK+ A + + I + +G
Sbjct: 134 VNHQMCNDCHRTEAK-DYWRALVQVRQRATNKKTFYYLEQLILKYKAHEQTLGIKPIHEG 192
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ N + A K V+F+ V P R H K+L+SHD SN +NYK T+SVEI PI R+ +
Sbjct: 193 LDFFYANEASARKMVDFLSSVIPCRYDHSKKLISHDIHSNIYNYKITYSVEIVPISRDSI 252
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+CLP K++ LG + + + K+TN + L+D T + L A YWR +F S+ +QL+
Sbjct: 253 VCLPRKLSHQLGGINSICLVYKITNFVHLIDVSTGQIAELSATLYWRHTFNSICDPKQLI 312
Query: 317 EYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
EY V+D+E + + +K+V+AD V R D G + + RTHLGH+L P
Sbjct: 313 EYTVMDIEQIKFKDRKFFPGQGTISNKHVIADVWVVRSCDLGLTENLIHTRTHLGHILKP 372
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
GD LGY L +N ND + V+P+ IL KK+Y + R +R R WKLK + +
Sbjct: 373 GDTVLGYALNESNINDENFEMLNKDVVPDVILTKKNYTQDRAARRRM-RDWKLKHMIQDK 431
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN-KDYQPSEMASVTDGEDVPSVP 488
D+ TD N +Y EFL DLEE+PE+R +I++Y++ + P + ++D + P +
Sbjct: 432 DNMV--TD----NNDYYEFLEDLEEDPEMRQHINIYKDSRKLIPVDTNELSD-PNCPQIT 484
Query: 489 LDELLADL 496
L+E+L DL
Sbjct: 485 LEEMLDDL 492
>gi|325090511|gb|EGC43821.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H88]
Length = 527
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/511 (40%), Positives = 314/511 (61%), Gaps = 34/511 (6%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI++G+Q+ + C +C+ +LQPP
Sbjct: 20 QQTATILCCNCGAPIDGTTSAGALCEDCVKLTVDISQGIQREATLHCCRDCERWLQPPSQ 79
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A LES+ELL C+++L+ L++VR+++A FIWTEPHSKRIKVK+ VQ+E G IL+Q
Sbjct: 80 WISAALESRELLALCLRKLRGLSKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTILQQ 139
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
++ VEYV C C++ + + W A VQ+RQ V H+RTF YLEQLILKH+A I
Sbjct: 140 TFEVEYVVASQQCPECAKSYTH-NTWRACVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 198
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + G+DFFF R+HA K V+F+ VAP R + ++L+S D ++ +YK T+SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKITYSVYLI 258
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP +A SLGN+ PL +C +V SI+LLDP TL+ + + YWR+ FK++
Sbjct: 259 PICKDDLVALPISLAKSLGNIHPLTLCYRVGTSISLLDPSTLQTADIPSPIYWRTPFKNV 318
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++LVE+IV+D+E V + LA+ VAR SD G NDT + RTHLG +L+
Sbjct: 319 ADVQELVEFIVMDIEPAGRSVG----HFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHV 374
Query: 370 GDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD GY L +N ND +E +P+ +L++K Y RK+ R+W+LK
Sbjct: 375 GDSVKGYLLSGSNFNDTNYEALEQSSVYSSTIPDVVLVRKHYP----RKKKPKRNWRLKR 430
Query: 425 LDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLY----------RNKDYQ 471
++ E ++ S + +++++ +++E FLRD+EE+ ELR +LY R +
Sbjct: 431 MNREEEEPVASSRKQERDRVEEDFEMFLRDVEEDAELRSTFALYKAKKAKADTARMEGID 490
Query: 472 PSEMASV-----TDGEDVPSVPLDELLADLD 497
M+ V +D+P + +DELL D +
Sbjct: 491 HDAMSVVEDDEHDSEDDIPKISMDELLDDFE 521
>gi|240278569|gb|EER42075.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H143]
Length = 527
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/511 (40%), Positives = 314/511 (61%), Gaps = 34/511 (6%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI++G+Q+ + C +C+ +LQPP
Sbjct: 20 QQTATILCCNCGAPIDGTTSAGALCEDCVKLTVDISQGIQREATLHCCRDCERWLQPPSQ 79
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A LES+ELL C+++L+ L++VR+++A FIWTEPHSKRIKVK+ VQ+E G IL+Q
Sbjct: 80 WISAALESRELLALCLRKLRGLSKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTILQQ 139
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
++ VEYV C C++ + + W A VQ+RQ V H+RTF YLEQLILKH+A I
Sbjct: 140 TFEVEYVVASQQCPECAKSYTH-NTWRACVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 198
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + G+DFFF R+HA K V+F+ VAP R + ++L+S D ++ +YK T+SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKITYSVYLI 258
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP +A SLGN+ PL +C +V SI+LLDP TL+ + + YWR+ FK++
Sbjct: 259 PICKDDLVALPISLAKSLGNIHPLTLCYRVGTSISLLDPSTLQTADIPSPIYWRTPFKNV 318
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++LVE+IV+D+E V + LA+ VAR SD G NDT + RTHLG +L+
Sbjct: 319 ADVQELVEFIVMDIEPAGRSVG----HFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHV 374
Query: 370 GDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD GY L +N ND +E +P+ +L++K Y RK+ R+W+LK
Sbjct: 375 GDSVKGYLLSGSNFNDTNYEALEQSSVYSSTIPDVVLVRKHYP----RKKKPKRNWRLKR 430
Query: 425 LDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLY----------RNKDYQ 471
++ E ++ S + +++++ +++E FLRD+EE+ ELR +LY R +
Sbjct: 431 MNREEEEPVASSRKQERDRVEEDFEMFLRDVEEDAELRSTFALYKAKKAKADTGRMEGID 490
Query: 472 PSEMASV-----TDGEDVPSVPLDELLADLD 497
M+ V +D+P + +DELL D +
Sbjct: 491 HDAMSVVEDDEHDSEDDIPKISMDELLDDFE 521
>gi|225555940|gb|EEH04230.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus
G186AR]
Length = 527
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/511 (40%), Positives = 314/511 (61%), Gaps = 34/511 (6%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ +A +C C++ VDI++G+Q+ + C +C+ +LQPP
Sbjct: 20 QQTATILCCNCGAPIDGTTSAGALCEDCVKLTVDISQGIQREATLHCCRDCERWLQPPSQ 79
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A LES+ELL C+++L+ L++VR+++A FIWTEPHSKRIKVK+ VQ+E G IL+Q
Sbjct: 80 WISAALESRELLALCLRKLRGLSKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTILQQ 139
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
++ VEYV C C++ + + W A VQ+RQ V H+RTF YLEQLILKH+A I
Sbjct: 140 TFEVEYVVASQQCPECAKSYTH-NTWRACVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 198
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + G+DFFF R+HA K V+F+ VAP R + ++L+S D ++ +YK T+SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKITYSVYLI 258
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP +A SLGN+ PL +C +V SI+LLDP TL+ + + YWR+ FK++
Sbjct: 259 PICKDDLVALPISLAKSLGNIHPLTLCYRVGTSISLLDPSTLQTADIPSPIYWRTPFKNV 318
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++LVE+IV+D+E V + LA+ VAR SD G NDT + RTHLG +L+
Sbjct: 319 ADVQELVEFIVMDIEPAGRSVG----HFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHV 374
Query: 370 GDYALGYDLYSANNND-----MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD GY L +N ND +E +P+ +L++K Y RK+ R+W+LK
Sbjct: 375 GDSVKGYLLSGSNFNDTNYEALEQSSVYSSTIPDVVLVRKHYP----RKKKPKRNWRLKR 430
Query: 425 LDMEVDD---SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLY----------RNKDYQ 471
++ E ++ S + +++++ +++E FLRD+EE+ ELR +LY R +
Sbjct: 431 MNREEEEPVASSRKQERDRVEEDFEMFLRDVEEDAELRSTFALYKAKKAKADTGRMEGID 490
Query: 472 PSEMASV-----TDGEDVPSVPLDELLADLD 497
M+ V +D+P + +DELL D +
Sbjct: 491 HDAMSVVEDDENDSEDDIPKISMDELLDDFE 521
>gi|448527302|ref|XP_003869464.1| Nmd3 nonsense-mediated mRNA decay protein [Candida orthopsilosis Co
90-125]
gi|380353817|emb|CCG23329.1| Nmd3 nonsense-mediated mRNA decay protein [Candida orthopsilosis]
Length = 515
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 219/492 (44%), Positives = 317/492 (64%), Gaps = 13/492 (2%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG+PM MC C++ VDITEG+ + +S C C+ +LQPP W++
Sbjct: 18 VATVLCCNCGVPMDGSQGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWVR 77
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
AQLES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI+VKL VQ E + I++Q++
Sbjct: 78 AQLESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIVQQTFE 137
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH+A + I +
Sbjct: 138 VEYVVIAMQCADCAK-SYTTNTWRATVQIRQKVPHKRTFLYLEQLILKHNAHMDTVSIQE 196
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HA K V+F+ VAPV+ + ++LVS D S + +YK+++S+EI+PIC
Sbjct: 197 TKDGLDFFYAQKNHAAKMVDFLTSVAPVKVKKSEELVSTDIHSGSSSYKFSYSIEIAPIC 256
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A S+GN+ LV+C KV N++ +D +L+ L + YWRS F SL+ +
Sbjct: 257 RDDLVVLPKKLAHSMGNISRLVLCNKVNNAMQFIDFSSLQTADLSSQVYWRSPFPSLVDA 316
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QLVE+IVLD+E ++ G KYVLAD +V+R SD G ND F +RTHLG +L+PGD
Sbjct: 317 TQLVEFIVLDIEPTG---DMKG-KYVLADIEVSRASDLGSNDQTFYVRTHLGAILHPGDS 372
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD----ME 428
LGY L ++N N D PE +++KK Y K + +++ K + + +
Sbjct: 373 CLGYYLTNSNLNSELWDTLDTDNTPEVVIVKKHYPRKSKKSKNRKWKLKRMAKEHNDIIA 432
Query: 429 VDDSK-GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSE--MASVTDGEDVP 485
DDS+ R +QEK ++YE FL++LEE+ ELR I++Y+ + Q D +D P
Sbjct: 433 NDDSRQARQEQEKAERDYELFLQELEEDEELRQTINMYKADEGQSQRDDDDIDEDEDDAP 492
Query: 486 SVPLDELLADLD 497
+ +DELL +LD
Sbjct: 493 RIAIDELLDELD 504
>gi|294881745|ref|XP_002769476.1| hypothetical protein, conserved [Perkinsus marinus ATCC 50983]
gi|239872935|gb|EER02194.1| hypothetical protein, conserved [Perkinsus marinus ATCC 50983]
Length = 533
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/468 (42%), Positives = 297/468 (63%), Gaps = 25/468 (5%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
+VLCC CG MAPN +NMCV C++ EVDITEG+ K ++++C EC+ Y +PP W+ +
Sbjct: 25 ANVLCCVCGASMAPNQSNMCVNCMKGEVDITEGISKQAVVNYCRECNRYQRPP--WVPCE 82
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
ES+ELL C+K++K LN+V+LV+A FIW P SKR+KVKL VQKEV+NGAI++QS +V+
Sbjct: 83 PESRELLGICLKKIKGLNKVKLVDANFIWQAPTSKRMKVKLTVQKEVMNGAIMQQSMIVD 142
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
++ CD C R P W A+VQ+RQ H+RTF+YLEQLILKHDA + + I +
Sbjct: 143 FIVAWQQCDDCKRTYT-PHTWNASVQVRQKTDHKRTFYYLEQLILKHDAHEKVVGIKRTP 201
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DF FG+RSHA KF EFV P R + K L+SHD + +NYKYT +++ P+C++
Sbjct: 202 DGLDFHFGHRSHAQKFSEFVLSQVPSRVKQSKHLISHDSHNTTYNYKYTTLIDMCPVCKD 261
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
D++ LP + LG + P+ + KV++ I L+DP T R L +YW++ F+ LLT R
Sbjct: 262 DVVFLPKALKNKLGGVNPIQVVTKVSSQIRLVDPLTGRVSDLAGIEYWKNPFEPLLTRRH 321
Query: 315 LVEYIVLDVEVVSSEVNV-------GGSKYVLADAQVARVSDFGK----NDTIFSIRTHL 363
LVE+ VL+VE +S G Y + D ++ R + G+ + I ++R+HL
Sbjct: 322 LVEFTVLNVEEDTSRARAATTFNRRGQKAYTMVDLELMRTENSGEAAAGDPEIITVRSHL 381
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
G +L PGD GYDL + N + ++ + + L + I++KK+Y R RK R W L+
Sbjct: 382 GGVLQPGDLCAGYDLRTVNVSGIDEEMLEKTNL-DVIIVKKTYTRHRQRK----RPWMLR 436
Query: 424 SLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ 471
L+ E D+ G E + +YE+F+RD+EE+ +LR I+L+R+ ++
Sbjct: 437 RLERE--DAGG----ESNDGDYEQFMRDIEEDKDLRQEINLFRDPTWK 478
>gi|430813858|emb|CCJ28843.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 527
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/513 (41%), Positives = 317/513 (61%), Gaps = 40/513 (7%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQ----------------KHVIISHCPEC 60
+LCC CG+ ++ + + MC+ C++ VDIT+G++ K II C EC
Sbjct: 18 MLCCDCGVTISSSLSTMCIDCIKVNVDITDGIKSLMGILYSYKFDLGISKENIIHSCREC 77
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
+L W+ A++ESKELL+ C+K+++ LN+VRLV+A FIWTEPHS++IKVK+ +QKE
Sbjct: 78 GRFLHSQNQWLYAEVESKELLSLCLKKIRGLNKVRLVDASFIWTEPHSRKIKVKVTIQKE 137
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
VL IL+Q++ VEY C C+R+ W A VQ+RQ V H+RTF YLEQLIL+
Sbjct: 138 VLISTILQQTFEVEYTMVYQQCPDCARIYT-AHTWKALVQIRQKVDHKRTFLYLEQLILR 196
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
H A A I ++ G+DF++ NRSHA+KF+EF+ V PV+++ ++L+S D KSN +Y
Sbjct: 197 HHAHRDASSIKEVKDGLDFYYLNRSHAIKFLEFLSTVVPVKTKKSEELISMDIKSNISSY 256
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ 300
K+T+SVE+ PIC++DL+CLP +A S+GNL LV+C KV NSI ++DP +L+ +
Sbjct: 257 KFTYSVELIPICKDDLVCLPKDMAKSMGNLEQLVLCYKVGNSIHVIDPRSLQIGNIVPAI 316
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEV-----------VSSEVNVGGSKYVLADAQVARVSD 349
YW+ F SL + LVE+IVLD + + K+ LA+ QV R D
Sbjct: 317 YWKMPFFSLCNVKDLVEFIVLDSMFYILFNYLLYIYIVELLGPVTCKFALAEVQVIRSFD 376
Query: 350 FGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLV--LPETILIKKSYE 407
G N + + +HLG +L PGD +GY L ++N N + Y+ +PE IL+KK Y
Sbjct: 377 LGSNSNPYFVYSHLGSILKPGDIVMGYYLENSNFNSSIFEMYQETCAYVPEIILVKKGYP 436
Query: 408 EKRLRKRSKPRSWKLKSL-DMEVDDSKGRT-DQEKMNKEYEEFLRDLEENPELRFNISLY 465
+ RK+S+ R+WKLK+L E ++ G+ DQ +YE FL+DLEE+ ELR N++LY
Sbjct: 437 SR--RKKSRIRNWKLKTLFSKEKSETNGKKYDQTCFEDDYECFLQDLEEDIELRRNVNLY 494
Query: 466 RNK-DYQPSEMAS-----VTDGEDVPSVPLDEL 492
+ K + Q + MA+ V+D E+ P + + EL
Sbjct: 495 KTKMNCQKTFMATNTEDDVSDSEEFPEIDVSEL 527
>gi|268562890|ref|XP_002638695.1| Hypothetical protein CBG11892 [Caenorhabditis briggsae]
Length = 513
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/500 (41%), Positives = 302/500 (60%), Gaps = 18/500 (3%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
TVG + CC+CG+ + PN ANMC CLRS VDITEG+ K I C CD Y PP W++
Sbjct: 9 TVGLIACCECGVAIEPNPANMCSGCLRSRVDITEGITKQCTIYMCKFCDRYFVPPSAWMR 68
Query: 73 AQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A+LESKELL+ C+K+LK L +VRL +A F+WTE HSKRIKVK+ +QKEV IL+Q+
Sbjct: 69 AELESKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQAV 128
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
VVE+ +CD C R +A D W A VQ+RQ ++T FYLEQL+LKH A +
Sbjct: 129 VVEFTVHSQLCDDCRRAEAK-DFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECTGVK 187
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ GIDFFF + A FV F+ V P + + ++LVSHD K+N ++YK+TF VEI PI
Sbjct: 188 PVPTGIDFFFAKQQEARTFVNFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCVEIVPI 247
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
CR++++C+P K A LGN+ +++C++V+N I L+DP L+ + A +WR F+SL
Sbjct: 248 CRDNIVCIPKKQAQQLGNMSQILLCLRVSNVITLIDPSNLQLVDVQATNFWREPFESLCG 307
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSKYV-----LADAQVARVSDFGKNDT-IFSIRTHLGH 365
+QL E+ VL+V+ + + G YV LA+ + R G +D RTHLGH
Sbjct: 308 PKQLTEFYVLEVDPIDNFERKAGHGYVSKKHELANVWLVRSDQVGMSDAQPLYARTHLGH 367
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
LL+PGD + +D+ + N N+ D K +P+ I+++K ++ R R+ R WKLK L
Sbjct: 368 LLSPGDLVMAFDMKNCNVNNATFDAMKIDNIPDAIIVRKVFDRTR---RTAKRQWKLKRL 424
Query: 426 DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVP 485
VD + + + E++ F+ D+EE+ +R I++Y++ + P+ D P
Sbjct: 425 --VVDGNIVGNETASVADEFQGFMEDIEEDALMREKINIYKDAEKAPNVDGDDDDDH--P 480
Query: 486 SVP-LDELLADLDLKSDDGE 504
P L E+L DLK DD E
Sbjct: 481 EAPSLAEMLE--DLKFDDEE 498
>gi|328773857|gb|EGF83894.1| hypothetical protein BATDEDRAFT_8015, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 480
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/457 (44%), Positives = 294/457 (64%), Gaps = 19/457 (4%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LC CG + PNAANMC+ C+R+ VDIT+G+ K + C CD YLQPP W+ +LES
Sbjct: 3 LCASCGTLIVPNAANMCIECVRANVDITDGIPKQATVHFCRGCDRYLQPPNIWVACELES 62
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQ 137
+ELL C+++LK L++VRLV+A F WTEPHSKRIKVKL +QKEV IL+Q ++VEY+
Sbjct: 63 RELLALCLRKLKGLSKVRLVDAGFTWTEPHSKRIKVKLTIQKEVFASTILQQVFIVEYIV 122
Query: 138 QDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGI 197
C+ C+RV A W A VQLRQ V H+RTF +LEQ ILKH+A I + G+
Sbjct: 123 AGQYCEECTRVDAQL-TWKAVVQLRQKVAHKRTFLWLEQFILKHNAHKDTSNIKEFRDGL 181
Query: 198 DFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLI 257
DF++ RSHA+K VEF+ V P++S+ +QL+S D + +YK+T+SVEI PIC++DL+
Sbjct: 182 DFYYTQRSHAIKMVEFLSSVVPLKSKTSEQLISTDTHAGTSDYKFTYSVEIVPICKDDLV 241
Query: 258 CLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVE 317
CL K+A +L + PL +C +V+N + DP T + + A Q+W S F +L ++ L+E
Sbjct: 242 CLSHKMARTLSEISPLALCTRVSNVVTFTDPITGKSAEMRAPQFWDSPFPTLCETKDLIE 301
Query: 318 YIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYD 377
+ V+DV++ E G ++ +A +V+R +D + F +RTHLG +LN GD+A GY
Sbjct: 302 FYVIDVQL---EGQFG--RHQMATVEVSRSNDLSRT---FIVRTHLGFILNAGDHAKGYI 353
Query: 378 L-----YSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDS 432
+ + N + + +GLV P+ +L++KSY R ++R + +WKLK L E D
Sbjct: 354 IANANFNNDNFDHLMTSNRRGLV-PDVVLVRKSYPNARRKRRRR--NWKLKGLVKEEDGE 410
Query: 433 KGRT--DQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
RT D+ K +YE FLRD+EE+PELR ++LY+
Sbjct: 411 VNRTKLDKSKTEADYEVFLRDVEEDPELRNMVNLYKG 447
>gi|149238838|ref|XP_001525295.1| nonsense-mediated mRNA decay protein 3 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146450788|gb|EDK45044.1| nonsense-mediated mRNA decay protein 3 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 519
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 222/497 (44%), Positives = 317/497 (63%), Gaps = 18/497 (3%)
Query: 14 VGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V +VLCC CG+PM MC C++ VDITEG+ + +S C C+ +LQPP WI+
Sbjct: 18 VATVLCCNCGVPMDGSQGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWIR 77
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
AQLES+ELL C++RLK LN+VRL++A FIWTEPHS+RI+VK+ VQ E + I++Q++
Sbjct: 78 AQLESRELLALCLRRLKGLNKVRLIDASFIWTEPHSRRIRVKITVQGEAMANTIVQQTFE 137
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKH+A + I +
Sbjct: 138 VEYVVIAMQCPDCAK-SYTTNTWRATVQIRQKVPHKRTFLYLEQLILKHNAHMDTVSIQE 196
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G+DFF+ ++HA K V+F+ VAPV+ + ++LVS D S + +YK+++SVEI+PIC
Sbjct: 197 TKDGLDFFYAQKNHAAKMVDFLTSVAPVKVKKSEELVSTDIHSGSSSYKFSYSVEIAPIC 256
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP K+A S+GN+ LV+C KV N++ +D TL+ L + YWR+ F SLL +
Sbjct: 257 RDDLVVLPKKLAHSMGNISRLVLCNKVNNAMQFVDTNTLQTADLSSQVYWRAPFPSLLDA 316
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
QLVE++VLDVE +V G KYVLAD +V+R SD G ND F +R+HLG +L+PGD
Sbjct: 317 TQLVEFVVLDVEPTG---DVKG-KYVLADIEVSRASDLGNNDQTFYVRSHLGAILHPGDS 372
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD----ME 428
LGY L + N N D E IL+KK Y K + +++ K + + +
Sbjct: 373 CLGYYLTNTNFNSDLWDTLDTDNTAEVILVKKHYARKSKKSKNRKWKLKRMAKEHNDIVA 432
Query: 429 VDDSK-GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMAS-------VTD 480
DDS+ R +QE+ ++YE FL++LEE+ ELR I++Y+ D P + D
Sbjct: 433 NDDSRQARQEQERAERDYELFLQELEEDEELRQTINMYKAGDDAPVHAPAGDDIDEDDED 492
Query: 481 GEDVPSVPLDELLADLD 497
ED P++ +DELL +LD
Sbjct: 493 DEDAPTIGIDELLDELD 509
>gi|116196790|ref|XP_001224207.1| hypothetical protein CHGG_04993 [Chaetomium globosum CBS 148.51]
gi|88180906|gb|EAQ88374.1| hypothetical protein CHGG_04993 [Chaetomium globosum CBS 148.51]
Length = 820
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/456 (43%), Positives = 286/456 (62%), Gaps = 23/456 (5%)
Query: 4 DAGMFTV-PQTVGS------VLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVII 54
D GM + PQ +GS +LCC CG P+ +A +C C++S VDI++G+ + ++
Sbjct: 373 DTGMVPLNPQQLGSARTGATILCCNCGAPIDGTASAGALCYDCIKSTVDISQGIPREGVL 432
Query: 55 SHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVK 114
C +CD +L PP +W+ A LES+ELL+ C+KRL+NL +VR+V+A F+WTEPHS+RIKVK
Sbjct: 433 HVCRDCDRWLMPPASWVTATLESRELLSLCLKRLRNLGKVRIVDARFVWTEPHSRRIKVK 492
Query: 115 LKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYL 174
+ VQ V +G +++QS+ V YV + C C++ + W AAVQ+RQ VTH+RTF L
Sbjct: 493 ITVQDAVADGVMMQQSFEVVYVVANQQCRECAK-SYTANVWRAAVQVRQKVTHKRTFLLL 551
Query: 175 EQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPK 234
EQLILKH A I I + GIDF+F R+ A F+ F+ V PV ++ + L+S D
Sbjct: 552 EQLILKHQAHRDTINIKEEKDGIDFYFAQRNQAEAFIHFLKSVVPVHTKESRHLISADTH 611
Query: 235 SNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHC 294
+ N +YKY +S E+ P+CR+DL+ LP K+A SLGN+ PLV+C ++ S+ LLDP TL+
Sbjct: 612 TGNKSYKYNYSAELVPVCRDDLVALPLKIAKSLGNISPLVLCWRIGTSVNLLDPNTLQTA 671
Query: 295 FLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKND 354
L A+ YWR+ F L + ++VE++V+D+E N K+VL +A VAR SD G ND
Sbjct: 672 ELSAETYWRAPFAPLAGAPEMVEFVVMDIE----PSNQRKGKWVLGEATVARASDLGVND 727
Query: 355 TIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEK 409
+ RTHLG LL+PGD +GY L N N LD + G +P+ +L+KK Y +
Sbjct: 728 NTYFARTHLGSLLHPGDSVMGYMLTGTNFNSDALDAIENSRAYGSTIPDVVLVKKHYANR 787
Query: 410 RLRKRSKPRSWKLKSLDMEVDDSKGR-TDQEKMNKE 444
R KR R+WKLK + + D + DQ +++ E
Sbjct: 788 RKNKR---RNWKLKRMAKDEGDLLPKAADQARLDAE 820
>gi|407420941|gb|EKF38750.1| hypothetical protein MOQ_001039 [Trypanosoma cruzi marinkellei]
Length = 535
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 223/510 (43%), Positives = 310/510 (60%), Gaps = 28/510 (5%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+ + VLCC CG+ + N +NMC +CLRS VDITE LQK II +CPEC YLQPP+ W
Sbjct: 14 KIIPKVLCCICGLLIDSNPSNMCPSCLRSHVDITESLQKEYIIVYCPECTRYLQPPQYWS 73
Query: 72 KAQLESKELLTFCVKRLKNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
A LES+ELLT C+KR+K ++R +LV+A FIWTEPHSKR+KVKL +QKEVLN +++Q
Sbjct: 74 HADLESRELLTICLKRIKGMSRNVFKLVDANFIWTEPHSKRLKVKLVLQKEVLNNIVIQQ 133
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
+ VVEYV C +C +V QW A VQ+RQ TH++TF +LEQLILKH IR
Sbjct: 134 ACVVEYVVLWQQCPTCQKVATGQPQWDACVQVRQKTTHKKTFMFLEQLILKHKLHESFIR 193
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
+ G+DFFF ++SHA+ F+EF+ + +P+ R QLVSHD K+N +TFSVEI+
Sbjct: 194 VESKPDGLDFFFAHKSHAMNFLEFLNRNSPITRRDAVQLVSHDSKNNTAVQHHTFSVEIA 253
Query: 250 PICREDLICLPPK-VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
P+CREDL+ LP + + LG LGPLVI KV +SI LLDP TLR YW+ F S
Sbjct: 254 PLCREDLLLLPYQNYYLKLGGLGPLVIVHKVYSSIVLLDPKTLRAGEFTGQYYWKKPFPS 313
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
++SR+L E+ VL+ + V +Y L V S+ G + + +HLG LL
Sbjct: 314 FMSSRELTEFYVLECTLTG----VTNGRYQLGMVTVCLSSEVGHGRE-WIVTSHLGGLLQ 368
Query: 369 PGDYALGYDLYSANNNDMELD--KYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
PGD A+GY L N N+ E D +YK L E L++K + +R R+ R WKLK L+
Sbjct: 369 PGDLAMGYLLEGKNFNNEEWDSQRYKPEQLQEVFLVRKHFPSQRARRHK--RMWKLKHLE 426
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLR--DLEENPELRFNISLYRNKDYQPSEMASVTDGED- 483
+ S GR ++ + E E DLE + E R ++ +Y+ +++ ++ A VT+G D
Sbjct: 427 VLDPMSMGRNEKRQEELEEERREFEDDLERDAEFRRDVPIYKLSEFELAQRA-VTNGNDY 485
Query: 484 ------------VPSVPLDELLADLDLKSD 501
VP + L+E+L +L ++ D
Sbjct: 486 MEVEEEGDENDEVPQIALEEMLDELRIEDD 515
>gi|346973435|gb|EGY16887.1| nonsense-mediated mRNA decay protein [Verticillium dahliae VdLs.17]
Length = 502
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/504 (41%), Positives = 321/504 (63%), Gaps = 24/504 (4%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
FT TV +VLC CG P+ + +C ACLR DI+ G+Q+ ++ C +CD +L PP
Sbjct: 3 FTRKTTVATVLCHNCGAPIDGSTGTICQACLRLTCDISNGVQREATLTFCRDCDRWLLPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
++WI AQ ES+ELL C+K+L+ LN+VR+++A F+WTEPHSKRIKVK+ +Q EV +G +L
Sbjct: 63 QSWIVAQPESRELLALCLKKLRGLNKVRVIDASFVWTEPHSKRIKVKITIQDEVQDGVLL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQ-HVTHRRTFFYLEQLILKHDAAAR 186
+Q++ YV C C++ W + VQ+RQ + H+RTF +LEQ ILKH A
Sbjct: 123 QQAFEAIYVVAYAQCPECAK-SFTAHVWRSVVQVRQKNCPHQRTFLFLEQQILKHGAHKE 181
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
+ I + G+DFFF +++ A KFV+F+ V PV+ + ++L+S D + +YK++ SV
Sbjct: 182 TLNIKEAPSGMDFFFAHKNQADKFVDFLNAVVPVKVKKSQELISQDVHTATKSYKFSSSV 241
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
E+ PICR+DL+ LP K+A GN+ PLV+C K+ S+ +DP TL+ + + YWRS F
Sbjct: 242 ELVPICRDDLVALPIKLAKQQGNITPLVLCHKIGTSVYFVDPSTLQISDVSSPVYWRSPF 301
Query: 307 KSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
+SL + Q+VE++V+D+E V K+ A+A VAR SD G NDT + +RTHLG+L
Sbjct: 302 QSLADTTQMVEFVVMDIE----RTGVTRGKWAAAEATVARASDLGVNDTTYFVRTHLGNL 357
Query: 367 LNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWK 421
L PGD A+GY + N N+ E + + +P+ +L+KK Y RK+++ R WK
Sbjct: 358 LQPGDSAMGYMITGTNFNNPEFEAIESSNTYSSRIPDVMLVKKHYPR---RKKNRKRQWK 414
Query: 422 LKSLDMEVDDSK---GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ---PSEM 475
LK M D+ + + DQ++M+ +YE+FL+D+EE+ E R ++LY+++ Q P M
Sbjct: 415 LKR--MAKDEGELLPKQADQDRMDAQYEQFLQDVEEDEEYRATMALYKSQQPQRVDPDAM 472
Query: 476 A-SVTDGED-VPSVPLDELLADLD 497
+ + T+GED P V ++ELL D+D
Sbjct: 473 SIAETEGEDEGPKVDMNELLEDMD 496
>gi|302407027|ref|XP_003001349.1| 60S ribosomal export protein NMD3 [Verticillium albo-atrum
VaMs.102]
gi|261359856|gb|EEY22284.1| nonsense-mediated mRNA decay protein [Verticillium albo-atrum
VaMs.102]
Length = 502
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/504 (41%), Positives = 320/504 (63%), Gaps = 24/504 (4%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
FT TV +VLC CG P+ + +C ACLR DI+ G+Q+ ++ C +CD +L PP
Sbjct: 3 FTRKTTVATVLCHNCGAPIDGSTGTICQACLRLTCDISNGVQREATLTFCRDCDRWLLPP 62
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
++WI AQ ES+ELL C+K+L+ LN+VR+++A F+WTEPHSKRIKVK+ +Q EV +G +L
Sbjct: 63 QSWIVAQPESRELLALCLKKLRGLNKVRVIDASFVWTEPHSKRIKVKITIQDEVQDGVLL 122
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQ-HVTHRRTFFYLEQLILKHDAAAR 186
+Q++ YV C C++ W + VQ+RQ + H+RTF +LEQ ILKH A
Sbjct: 123 QQAFEAIYVVAYAQCPECAK-SFTAHVWRSVVQVRQKNCPHQRTFLFLEQQILKHGAHKE 181
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
+ I + G+DFFF +++ A KFV+F+ V PV+ + ++L+S D + +YK++ SV
Sbjct: 182 TLNIKEAPSGMDFFFAHKNQADKFVDFLNAVVPVKVKKSQELISQDVHTATKSYKFSSSV 241
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
E+ PICR+DL+ LP K+A GN+ PLV+C K+ S+ +DP TL+ + + YWRS F
Sbjct: 242 ELVPICRDDLVALPIKLAKQQGNITPLVLCHKIGTSVYFVDPSTLQISDVSSPVYWRSPF 301
Query: 307 KSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
+SL + Q+VE++V+D+E V K+ A+A VAR SD G NDT + +RTHLG+L
Sbjct: 302 QSLADTTQMVEFVVMDIE----RTGVTRGKWAAAEATVARASDLGVNDTTYFVRTHLGNL 357
Query: 367 LNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWK 421
L PGD A+GY + N N+ E + + +P+ +L+KK Y RK+++ R WK
Sbjct: 358 LQPGDSAMGYMITGTNFNNPEFEAIESSNTYSSRIPDVMLVKKHYPR---RKKNRKRQWK 414
Query: 422 LKSLDMEVDDSK---GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ---PSEM 475
LK M D+ + + DQ++M+ +YE+FL+D+EE+ E R ++LY+++ Q P M
Sbjct: 415 LKR--MAKDEGELLPKQADQDRMDAQYEQFLQDVEEDEEYRATMALYKSQQPQRVDPDAM 472
Query: 476 A-SVTDGED-VPSVPLDELLADLD 497
+ + T+GED P V + ELL D+D
Sbjct: 473 SIAETEGEDEGPKVDMTELLEDMD 496
>gi|125982920|ref|XP_001355225.1| GA17465 [Drosophila pseudoobscura pseudoobscura]
gi|195168912|ref|XP_002025274.1| GL13399 [Drosophila persimilis]
gi|54643539|gb|EAL32282.1| GA17465 [Drosophila pseudoobscura pseudoobscura]
gi|194108730|gb|EDW30773.1| GL13399 [Drosophila persimilis]
Length = 523
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 215/511 (42%), Positives = 315/511 (61%), Gaps = 23/511 (4%)
Query: 2 AQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
A D + P V +LCC+C +P+ PN ANMCV CLR+ VDITE + K ++ C C+
Sbjct: 14 AVDGSSQSAPDAV--ILCCECAVPIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCE 71
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
YLQPP WI+A LES+ELL C+K+LK L V+LV+A FIWTE HSKRIKVKL V E+
Sbjct: 72 RYLQPPTEWIQASLESRELLALCLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEI 131
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
+ G +L+Q +VVE+ Q+ MC C R +A D W VQ+RQ +++TF+YLEQLILKH
Sbjct: 132 VGGTVLQQVFVVEFTVQNQMCTDCHRTEAK-DFWRCLVQVRQRAENKKTFYYLEQLILKH 190
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
A + I G+DF++ N +HA + V+F+ + P + K+L+SHD SNN+NYK
Sbjct: 191 KAHEHTLGIKPEHGGLDFYYANENHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYK 250
Query: 242 YTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQY 301
Y++SVE++P+ ++ +CL K+ LGNL P+ + +V++SI L+DP T + L + Y
Sbjct: 251 YSWSVELAPVSKDSAVCLSKKLRHQLGNLSPICLVNRVSSSIHLIDPLTAQIAELTSQVY 310
Query: 302 WRSSFKSLLTSRQLVEYIVLDVEVV---SSEVNVGGS----KYVLADAQVARVSDFGKND 354
+R+ F+++ +QLVEY+V+D+EV+ + G K+ L D V R S+ G ND
Sbjct: 311 FRAPFEAVCNPKQLVEYVVMDIEVIMEKDRKTYPGQGQLSFKHALCDIWVVRSSELGIND 370
Query: 355 TIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKR 414
R+HLGHLL GD +GY+ AN ND E +K ++P+ +L++K Y+ + R
Sbjct: 371 NPIHTRSHLGHLLKVGDSVMGYNTGEANINDPEFEKLASDLVPDVVLVRKHYDRQ---AR 427
Query: 415 SKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ-PS 473
R WK+K L E D + + D Y EFL DLEEN ++R +++YR+ + P
Sbjct: 428 LNQRVWKIKHLAAEATDERSKHD-------YHEFLDDLEENVDMRGQVNIYRDTNKTLPI 480
Query: 474 EMASVTDGEDVPSVPLDELLADLDLKSDDGE 504
E+ T DVP + L+E+L D+ L+ D E
Sbjct: 481 EVQGATG--DVPQITLEEMLEDMTLECADDE 509
>gi|312070305|ref|XP_003138085.1| NMD3 family protein [Loa loa]
Length = 511
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/503 (40%), Positives = 308/503 (61%), Gaps = 23/503 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISH-----------CPECDCY 63
G +LCC+CG + PNA NMCVAC+RS +DITEG+ K + C C +
Sbjct: 12 GKILCCQCGTSIEPNAMNMCVACVRSRIDITEGIPKQSEVYSTIEEIYCRAFMCKFCSRW 71
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVL 122
L PP W+ A+ ESKE+L +K+LK + RVRL++A F+WTEPHSKR+K+KL +Q EVL
Sbjct: 72 LIPPNGWVNAERESKEMLAILLKKLKPTMTRVRLIDASFVWTEPHSKRVKLKLTIQSEVL 131
Query: 123 NGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHD 182
GA+L+Q ++VE++ + MCD C R +A D W A VQ+RQ ++T FYLEQL+LK+
Sbjct: 132 TGAVLQQIFIVEFIVINQMCDDCRRAEAK-DFWRACVQVRQKCEFKKTLFYLEQLVLKYG 190
Query: 183 AAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKY 242
A I + G+DFF+ A KFV+F+ P R + ++LV+HD K+N ++YK+
Sbjct: 191 AHVSTTAIKPVPTGVDFFYAKLQDARKFVDFITSHLPCRYSYAQELVTHDVKNNTYDYKH 250
Query: 243 TFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW 302
TF VE+ PIC DL+CLP K+A +LGN+ LV+C +V I+++D TL+ +++ QYW
Sbjct: 251 TFCVEVVPICHGDLVCLPKKIAQALGNMNQLVVCFRVNTVISVIDSNTLQIADINSVQYW 310
Query: 303 RSSFKSLLTSRQLVEYIVLDVEVVSSEVNVG----GSKYVLADAQVARVSDFGKNDTIFS 358
R F++L S++L E+ V++VE + ++ +K+ L D V + G+++
Sbjct: 311 RDPFQALCQSKRLSEFYVMNVEDIDIQLRGTYSHLSTKHRLVDIWVVPSNQIGQDNQEVC 370
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPR 418
R+HLGHLL PGD LGYDL S+N N LD+ K +P+ IL++K Y+ ++R+
Sbjct: 371 TRSHLGHLLKPGDLVLGYDLRSSNVNSTLLDEMKRDRIPDIILVRKVYDRSIRQERN--- 427
Query: 419 SWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASV 478
+W+LK L + + D M E+E+FL DLEE+ +++ ++ YRN Q + +
Sbjct: 428 NWELKRL---IQNDGDVCDSSFMENEFEDFLEDLEEDEQMKQKVNFYRNSAKQQTVCSKN 484
Query: 479 TDGEDVPSVPLDELLADLDLKSD 501
E PL E++ +LDL +D
Sbjct: 485 IALELPLGPPLHEMMDNLDLNTD 507
>gi|402083202|gb|EJT78220.1| nonsense-mediated mRNA decay protein 3 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 525
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/512 (40%), Positives = 320/512 (62%), Gaps = 31/512 (6%)
Query: 7 MFTVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYL 64
M QT ++LCC CG P+ A +C C+++ VDI++G+Q+ ++ C +CD +L
Sbjct: 17 MGGTAQTGATILCCNCGAPIDGTTAAGALCYDCIKTTVDISQGIQREAVLHFCRDCDRWL 76
Query: 65 QPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNG 124
PP +W+ A ES+ELL C+K+LK L++VR+++A F+WTEPHS+R++VKL +Q V +G
Sbjct: 77 LPPASWVLAPPESRELLALCLKKLKGLHKVRIIDASFVWTEPHSRRVRVKLTIQDAVQDG 136
Query: 125 AILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAA 184
+L+QS+ V Y+ C C++ + W A+VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 137 VLLQQSFEVIYIVSYQQCPDCAK-SYTANVWRASVQVRQKVLHKRTFLFLEQLILKHGAH 195
Query: 185 ARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTF 244
I I ++ GIDFFF R+ A KFV+F+ P+R + ++L+S D ++ +YK+TF
Sbjct: 196 RDTINIKEVKDGIDFFFAARNQAEKFVDFLSSSVPIRMKKSQELISQDVHTSTKSYKFTF 255
Query: 245 SVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRS 304
SVE+ PIC+EDL+ LP K+A +GN+ PLV+C +V ++ +DP TL+ + A YWR
Sbjct: 256 SVELIPICKEDLVVLPIKLAKQVGNISPLVLCHRVGTAVNFMDPSTLQTAEVPASIYWRH 315
Query: 305 SFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLG 364
F S+ S+ LVE+I++D+E + ++ K++L +A VAR SD G ND + RTHL
Sbjct: 316 PFHSIAESKDLVEFIIMDIEPLGTQ----KGKWILGEATVARASDLGVNDKTYFARTHLS 371
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRS 419
LL GD LGY L N N+ E + G +P+ +L+KK ++ KR R++ R+
Sbjct: 372 GLLQAGDSVLGYMLTGTNFNNEEFQALEDSHAYGSTIPDVVLVKKHWQRKR---RNRTRN 428
Query: 420 WKLKSLDMEVDDSK---GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN---KDYQPS 473
W+LK M D+ + + DQE+++ EYE+FLRD+EE+ ELR ++LY++ QP
Sbjct: 429 WRLKR--MAKDEGELLPKKADQERLDAEYEQFLRDVEEDDELRATLALYKSSKKSKRQPE 486
Query: 474 EMA--------SVTDGEDVPSVPLDELLADLD 497
A ++ D +D P V + ELL D+D
Sbjct: 487 ADAMSIAETEMTMGDDDDAPKVNMAELLDDMD 518
>gi|71408415|ref|XP_806613.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70870409|gb|EAN84762.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 535
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 220/510 (43%), Positives = 312/510 (61%), Gaps = 28/510 (5%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+ + VLCC CG+ + N +NMC +CLRS VDITE LQK II +CPEC YLQPP+ W
Sbjct: 14 RIIPKVLCCMCGLLIDSNPSNMCPSCLRSHVDITESLQKEYIIVYCPECTRYLQPPQYWS 73
Query: 72 KAQLESKELLTFCVKRLKNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
+A LES+ELLT C+KR+K ++R +LV+A FIWTEPHSKR+KVKL +QKEVLN +++Q
Sbjct: 74 RADLESRELLTICLKRIKGMSRNVFKLVDANFIWTEPHSKRLKVKLVLQKEVLNNIVIQQ 133
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
+ VVEYV C +C +V QW A VQ+RQ TH++TF +LEQLILKH IR
Sbjct: 134 ACVVEYVVLWQQCPTCQKVATGQPQWDACVQVRQKTTHKKTFLFLEQLILKHKLHESFIR 193
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
+ G+DFFF ++SHA+ F+EF+ + +P+ R QLVSHD K+N +TFSVEI+
Sbjct: 194 VESKPDGLDFFFAHKSHAMNFLEFLNRNSPITRRDAVQLVSHDSKNNTAVQHHTFSVEIA 253
Query: 250 PICREDLICLPPK-VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
P+CREDL+ LP + + LG LGPLVI KV +SI LLDP TLR YW+ F +
Sbjct: 254 PLCREDLLLLPYQNYYLKLGGLGPLVIVHKVYSSIVLLDPKTLRAGEFTGQYYWKKPFPT 313
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
++SR+L E+ VL+ + V +Y L + S+ G+ + + +HLG LL
Sbjct: 314 FMSSRELTEFYVLE----CTPTGVTNGRYQLGVVTLCLSSEVGQGRE-WIVTSHLGGLLQ 368
Query: 369 PGDYALGYDLYSANNNDMELD--KYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
PGD A+GY L N N+ E D +Y L E L++K + +R R+ R WKLK LD
Sbjct: 369 PGDLAMGYLLEGKNFNNEEWDSQRYNPEQLQEVFLVRKHFPSQRARRHK--RIWKLKHLD 426
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLR--DLEENPELRFNISLYRNKDYQPSEMASVTDGED- 483
+ S GR ++ + E E DLE + E R ++ +Y+ +++ ++ A+ T+G+D
Sbjct: 427 VLDPMSMGRNEKRQEELEEERREFEDDLERDAEFRRDVPIYKMSEFELAQRAA-TNGKDC 485
Query: 484 ------------VPSVPLDELLADLDLKSD 501
VP + L+E+L +L ++ D
Sbjct: 486 VEPEEEGDEDDGVPQIALEEMLDELRIEDD 515
>gi|448103873|ref|XP_004200146.1| Piso0_002720 [Millerozyma farinosa CBS 7064]
gi|359381568|emb|CCE82027.1| Piso0_002720 [Millerozyma farinosa CBS 7064]
Length = 506
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/491 (43%), Positives = 316/491 (64%), Gaps = 13/491 (2%)
Query: 13 TVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
TV ++LCC CG+PM + MC C++ VDIT G+ + +S C C+ +LQPP WI
Sbjct: 16 TVATMLCCNCGVPMDGSSGLVMCYDCIKLTVDITAGIPRESNVSFCRNCERFLQPPGQWI 75
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
KA LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI++K+ VQ E ++ I++Q++
Sbjct: 76 KADLESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRIKVTVQGEAISNTIVQQTF 135
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
VEYV C C+R + W A VQ+RQ V+H+RTF YLEQLILKH+A + I
Sbjct: 136 EVEYVVIAMQCPDCAR-SYTANTWRATVQIRQKVSHKRTFLYLEQLILKHNAHLDTVSIQ 194
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ G+DFF+ ++HA K ++F+ V PVR++ ++LVS D S + +YK++FSVE+ PI
Sbjct: 195 ETKDGLDFFYSQKNHAAKMLDFLNTVVPVRTKKSEELVSQDIHSGSSSYKFSFSVELVPI 254
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
CR+DL+ LP +A LG + LV+C KV+N + LDP +L+ + YWR+ F SLL
Sbjct: 255 CRDDLVVLPKTLAHQLGYISRLVLCSKVSNLVQFLDPMSLQTADMVPQVYWRNPFPSLLD 314
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
+ QLVE+IVLDVE ++ G K+VLAD V+R SD G ND F +R+HLG +L+PGD
Sbjct: 315 TTQLVEFIVLDVEPTG---DMKG-KHVLADITVSRASDLGVNDNSFYVRSHLGAILHPGD 370
Query: 372 YALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDD 431
LGY L + N N D LPE IL+KK Y K + +++ LK + E ++
Sbjct: 371 SCLGYYLTNTNLNSDLFDSLDTDNLPEVILVKKFYTRKSKKSKNRKWK--LKRMAKEYNE 428
Query: 432 SK-----GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPS 486
S + +QEK ++YE FL++LEE+ ELR ++LY++++ + + + +D P
Sbjct: 429 SNNESRLAKAEQEKAERDYELFLQELEEDEELRQTVNLYKSENADKQDEDDIEEDDDAPE 488
Query: 487 VPLDELLADLD 497
+ +DELL +LD
Sbjct: 489 IAVDELLDELD 499
>gi|320586599|gb|EFW99269.1| nonsense-mediated mRNA decay protein 3 [Grosmannia clavigera
kw1407]
Length = 1008
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/467 (42%), Positives = 295/467 (63%), Gaps = 20/467 (4%)
Query: 12 QTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q + ++LC CG P+ ++ +C C++ VDI++ + + + C +CD + PP
Sbjct: 479 QAIATILCYNCGAPIDGTTSSGALCYDCIKMTVDISQNIPREANVQFCRDCDRWFLPPSQ 538
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W+ A ES+E+L C+KRL+ LN+VR+V+A FIWTEP+S+R++VKL VQ+EV +G +L Q
Sbjct: 539 WVVAAPESREMLAMCLKRLRGLNKVRVVDASFIWTEPNSRRVRVKLTVQEEVSDGVLLNQ 598
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ V Y H C C++ + + W A VQ+RQ V H+RTF +LEQLILKH A +
Sbjct: 599 SFEVMYTVSTHQCPECAKSYTH-NVWRACVQVRQKVQHKRTFLFLEQLILKHGAHRDTLN 657
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + +G+DFFF R+ A KFV+F+ V PV ++ +LVS D + + + K+ FSVE+
Sbjct: 658 IKEAKEGLDFFFAQRNQATKFVDFLKSVVPVHVKNSPELVSEDTHTGSKSMKFAFSVELV 717
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS--FK 307
PIC++DL+ LP +A +GN+ P+ +C ++ +I LLDP TL+ + A YWR F
Sbjct: 718 PICKDDLVALPLVLAKRIGNIAPVALCYRIGTAINLLDPATLQTAEVPASIYWREKVPFT 777
Query: 308 SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
L ++QLVE++VLD+E V V ++ LA+A VAR SD G ND + RTHLG LL
Sbjct: 778 PLTDAQQLVEFVVLDIE----PVGVRKGRWQLAEATVARASDLGSNDNTYFTRTHLGGLL 833
Query: 368 NPGDYALGYDLYSANNNDMELDK------YKGLVLPETILIKKSYEEKRLRKRSKPRSWK 421
+PGD A+GY L N+ +LD+ Y LV P+ +L+KK Y +R KR R+WK
Sbjct: 834 HPGDSAMGYLLNGTVFNNQQLDEIEQSHAYSSLV-PDVVLVKKHYPNRRKNKR---RNWK 889
Query: 422 LKSLDMEVDD-SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
L+ + E D + DQE+++ EYE FL+D+EE+ ELR ++LY+N
Sbjct: 890 LRRMAREEGDLLPKKADQERLDAEYEMFLQDVEEDDELRAALALYKN 936
>gi|428177639|gb|EKX46518.1| hypothetical protein GUITHDRAFT_94322, partial [Guillardia theta
CCMP2712]
Length = 460
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/462 (44%), Positives = 298/462 (64%), Gaps = 14/462 (3%)
Query: 22 CGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELL 81
CG+PM N ++MC C+R+ VDITEG+ K V + C C YL PP+ W + ESKELL
Sbjct: 2 CGVPMVWNPSSMCPNCIRTRVDITEGIPKSVPLQRCRACGRYLNPPKAWTVCEPESKELL 61
Query: 82 TFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHM 141
C+KR+K LN+V+L++A FIWTE HSKR+K+KL VQKEV +G IL+Q +VVE V +
Sbjct: 62 QICLKRVKGLNKVKLIDASFIWTEAHSKRLKLKLTVQKEVYSGVILQQVFVVEVVIHNFQ 121
Query: 142 CDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFF 201
C +C V A + W AAVQ+RQ V H+RTF+ LEQLILK+ A + + + ++ GIDF+F
Sbjct: 122 CTNCHMVAAQ-NTWRAAVQVRQKVDHKRTFYLLEQLILKYKAHQQTVSVKEVPDGIDFYF 180
Query: 202 GNRSHAVKFVEFVGKVAPVRSRH-DKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLP 260
+R HA+KF +FV V P R + ++L+S D +N N KYTFSVEI P+C++D+ICL
Sbjct: 181 LHRHHALKFQDFVNTVVPCRMKSASEKLISEDFNNNKINAKYTFSVEILPVCKDDIICLH 240
Query: 261 PKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIV 320
PK +LGN+GPLV+C+ VT S+ LLDP T++ L + ++R L++++Q EY +
Sbjct: 241 PKQHDTLGNVGPLVLCIGVTQSVKLLDPLTMKRAELRPEIFYRHPRGVLMSTKQATEYTI 300
Query: 321 LDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYS 380
+DVE + K A+ +AR D G ND IF THLG++L GD LGYDL +
Sbjct: 301 IDVE----PTGLVNGKMRQAELTLARTRDLGSNDQIFHSLTHLGNVLQAGDTVLGYDLTA 356
Query: 381 ANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEK 440
A N+ E ++ L LP+ ++IKK Y E R R+ R WKL+S+ E ++ ++ +
Sbjct: 357 AVFNEAETKEWPKLQLPDVVVIKKLYPEARRRR----RLWKLRSIIKEEEEGTYKSLHKM 412
Query: 441 MNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
++YEEFL+D+E + E+R +++Y++ PS+ DG+
Sbjct: 413 AEQDYEEFLQDVETDAEVRQRVNVYKD----PSKFRITDDGK 450
>gi|115389230|ref|XP_001212120.1| 60S ribosomal export protein NMD3 [Aspergillus terreus NIH2624]
gi|114194516|gb|EAU36216.1| nonsense-mediated mRNA decay protein 3 [Aspergillus terreus
NIH2624]
Length = 507
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/497 (41%), Positives = 304/497 (61%), Gaps = 26/497 (5%)
Query: 1 MAQDAGM-FTVPQT-----VGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVII 54
M +D M TVP V + LC CG P+ + +C C+++ VDI++G+Q+ +
Sbjct: 1 MEEDTPMPMTVPMAGTEPVVPTTLCYNCGAPLV--GSTLCNDCMKTSVDISQGIQREAAL 58
Query: 55 SHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVK 114
+ C +C+ +L PP TW A ES+EL+ C+++LK LN+VR+V+A FIWTEPHS+RIK+K
Sbjct: 59 NFCRDCERWLLPPATWTVAAPESRELMAICLRKLKRLNKVRVVDASFIWTEPHSRRIKLK 118
Query: 115 LKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYL 174
L +Q V N IL+Q++ V YV C C++ + W A+VQ+RQ+V+H+RTF +L
Sbjct: 119 LTIQDSVANDVILQQTFEVVYVVMYQQCPDCAKSYTQ-NHWRASVQVRQNVSHKRTFLHL 177
Query: 175 EQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPK 234
EQLILKH+A I + G+DFFF R+HA F+ F+ V PV +QL+S D
Sbjct: 178 EQLILKHNAHHDTTNIKEARNGVDFFFAQRNHAEAFLNFLHAVVPVEVTKSQQLISEDIH 237
Query: 235 SNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHC 294
++ +YK+T+S ++ P+C++DLI LP K+A LGN+ PL++C K+ SI LDP TL+
Sbjct: 238 TSTKSYKFTYSAKLVPVCKDDLIALPIKMAQQLGNISPLLLCNKIGTSITFLDPNTLQTA 297
Query: 295 FLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKND 354
L YWR+ F SL +LVE+IVLD+E K++LA+ VAR SDF +
Sbjct: 298 DLSPKIYWRAPFTSLAEVNELVEFIVLDIE----PTGYSNGKWLLAEVTVARASDFSGDK 353
Query: 355 TIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELD-----KYKGLVLPETILIKKSYEEK 409
F+ RTHLG +L+PGD LGY + AN N+ E + K G +P+ +L+KK Y
Sbjct: 354 QFFT-RTHLGSILHPGDSVLGYMVTGANFNNPEFEQIEQSKTYGARVPDVVLVKKHYPN- 411
Query: 410 RLRKRSKPRSWKLKSLDM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK 468
R++ R+WKLK L + E D +QE++ ++E FLRD+EE+ ELR ++LY+NK
Sbjct: 412 --RQKKNKRNWKLKRLAVGESDLLPTDHEQERVENDFEMFLRDVEEDAELRATLALYKNK 469
Query: 469 ---DYQPSEMASVTDGE 482
D +TDGE
Sbjct: 470 KKDDEMSIAETDMTDGE 486
>gi|294933199|ref|XP_002780647.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
gi|239890581|gb|EER12442.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
Length = 547
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/511 (41%), Positives = 311/511 (60%), Gaps = 35/511 (6%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
+VLCC CG M PN +NMCV C++ EVDITEG+ K ++++C EC+ Y +PP W+ +
Sbjct: 25 ANVLCCVCGASMTPNQSNMCVNCMKGEVDITEGISKQAVVNYCRECNRYQRPP--WVPCE 82
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
ES+ELL C+K++K LN+V+LV+A FIW P SKR+KVKL VQKEV+NGA+++QS +V+
Sbjct: 83 PESRELLGICLKKIKGLNKVKLVDANFIWQAPTSKRMKVKLTVQKEVMNGAVMQQSMIVD 142
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
++ CD C R P W A+VQ+RQ H+RTF+YLEQLILKHDA + + I +
Sbjct: 143 FIVAWQQCDDCKRTYT-PHTWNASVQVRQKTDHKRTFYYLEQLILKHDAHEKVVGIKRTP 201
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DF FG+RSHA KF EFV P R + K L+SHD + +NYKYT +++ P+C++
Sbjct: 202 DGLDFHFGHRSHAQKFSEFVLSQVPSRVKQSKHLISHDAHNTTYNYKYTTLIDMCPVCKD 261
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
D++ LP + LG + P+ + KV + I L+DP T + L +YW++ F SLLT R
Sbjct: 262 DVVFLPKALKNKLGGVNPIQVVTKVASQIRLVDPLTGKVSDLAGVEYWKNPFDSLLTRRH 321
Query: 315 LVEYIVLDVE-----VVSSEVNVGGSK-YVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
LVE+ VL+VE ++ N G K Y + D ++ R + I ++R+HLG +L
Sbjct: 322 LVEFTVLNVEEDTGPARAAAFNKRGLKGYTMVDLELMR------DPEIITVRSHLGGVLQ 375
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD GYDL + N + ++ + + L + I++KK+Y R RK R W L+ L+ E
Sbjct: 376 PGDLCAGYDLRTVNVSGIDEEMLEKTNL-DVIIVKKTYTRHRQRK----RPWILRRLERE 430
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQP---------SEMASVT 479
D +E + +YE+F+RD+EE+ +LR I+L+R+ ++ E
Sbjct: 431 ED-----AGEESNDGDYEQFMRDIEEDKDLRQEINLFRDPAWKEPCNVGAAQEGEEEGEA 485
Query: 480 DGEDVPSVPLDELLADLDLKSDDGEGDDSMR 510
D + P V L ELL L L +D G+ +S R
Sbjct: 486 DDNEAPEVDLAELLDGLTL-NDKGKVLNSRR 515
>gi|407853692|gb|EKG06571.1| hypothetical protein TCSYLVIO_002318 [Trypanosoma cruzi]
Length = 582
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 219/513 (42%), Positives = 312/513 (60%), Gaps = 28/513 (5%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+ + VLCC CG+ + N +NMC +CLRS VDITE LQK II +CPEC YLQPP+ W
Sbjct: 61 KIIPKVLCCMCGLLIDSNPSNMCPSCLRSHVDITESLQKEYIIVYCPECTRYLQPPQYWS 120
Query: 72 KAQLESKELLTFCVKRLKNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
A LES+ELLT C+KR+K ++R +LV+A FIWTEPHSKR+KVKL +QKEVLN +++Q
Sbjct: 121 HADLESRELLTICLKRIKGMSRNVFKLVDANFIWTEPHSKRLKVKLVLQKEVLNNIVIQQ 180
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
+ VVEYV C +C +V QW A VQ+RQ TH++TF +LEQLILKH IR
Sbjct: 181 ACVVEYVVLWQQCPTCQKVATGQPQWDACVQVRQKTTHKKTFLFLEQLILKHKLHESFIR 240
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
+ G+DFFF ++SHA+ F+EF+ + +P+ R QLVSHD K+N +TFSVEI+
Sbjct: 241 VESKPDGLDFFFAHKSHAMNFLEFLNRNSPITRRDAVQLVSHDSKNNTAVQHHTFSVEIA 300
Query: 250 PICREDLICLPPK-VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
P+CREDL+ LP + + LG LGPLVI KV +SI LLDP TLR YW+ F +
Sbjct: 301 PLCREDLLLLPYQNYYLKLGGLGPLVIVHKVYSSIVLLDPKTLRAGEFTGQYYWKKPFPT 360
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
++SR+L E+ VL+ + V +Y L + S+ G+ + + +HLG LL
Sbjct: 361 FMSSRELTEFYVLE----CTPTGVTNGRYQLGVVTLCLSSEVGQGRE-WIVTSHLGGLLQ 415
Query: 369 PGDYALGYDLYSANNNDMELD--KYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
PGD A+GY L N N+ E D +YK L E L++K + +R R+ R WKLK LD
Sbjct: 416 PGDLAMGYLLEGKNFNNEEWDSQRYKPEQLQEVFLVRKHFPSQRARRHK--RIWKLKHLD 473
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLR--DLEENPELRFNISLYRNKDYQPSEMASVTDGED- 483
+ S GR ++ + E E DLE + E R ++ +Y+ +++ ++ A+ +G+D
Sbjct: 474 VLDPMSMGRNEKRQEELEEERREFEDDLERDAEFRRDVPIYKMSEFELAQRAT-KNGKDC 532
Query: 484 ------------VPSVPLDELLADLDLKSDDGE 504
+P + L+E+L +L ++ D +
Sbjct: 533 AEPEEEGDEDDGMPQIALEEMLDELRIEDDAAD 565
>gi|71414710|ref|XP_809448.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873830|gb|EAN87597.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 609
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 219/508 (43%), Positives = 311/508 (61%), Gaps = 28/508 (5%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+ + VLCC CG+ + N +NMC +CLRS VDITE LQK II +CPEC YLQPP+ W
Sbjct: 84 KIIPKVLCCMCGLLIDSNPSNMCPSCLRSHVDITESLQKEYIIVYCPECTRYLQPPQYWS 143
Query: 72 KAQLESKELLTFCVKRLKNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
+A LES+ELLT C+KR+K ++R +LV+A FIWTEPHSKR+KVKL +QKEVLN +++Q
Sbjct: 144 RADLESRELLTICLKRIKGMSRNVFKLVDANFIWTEPHSKRLKVKLVLQKEVLNNIVIQQ 203
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
+ VVEYV C +C +V QW A VQ+RQ TH++TF +LEQLILKH IR
Sbjct: 204 ACVVEYVVLWQQCPTCQKVATGQPQWDACVQVRQKTTHKKTFLFLEQLILKHKLHESFIR 263
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
+ G+DFFF ++SHA+ F+EF+ + +P+ R QLVSHD K+N +TFSVEI+
Sbjct: 264 VESKPDGLDFFFAHKSHAMNFLEFLNRNSPITRRDAVQLVSHDSKNNTAVQHHTFSVEIA 323
Query: 250 PICREDLICLPPK-VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
P+CREDL+ LP + + LG LGPLVI KV +SI LLDP TLR YW+ F +
Sbjct: 324 PLCREDLLLLPYQNYYLKLGGLGPLVIVHKVYSSIVLLDPKTLRAGEFTGQYYWKKPFPT 383
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
++SR+L E+ VL+ + V +Y L + S+ G+ + + +HLG LL
Sbjct: 384 FMSSRELTEFYVLE----CTPTGVTNGRYQLGVVTLCLSSEVGQGRE-WIVTSHLGGLLQ 438
Query: 369 PGDYALGYDLYSANNNDMELD--KYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
PGD A+GY L N N+ E D +YK L E L++K + +R R+ R WKLK LD
Sbjct: 439 PGDLAMGYLLEGKNFNNEEWDSQRYKPEQLQEVFLVRKHFPSQRARRHK--RVWKLKHLD 496
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLR--DLEENPELRFNISLYRNKDYQPSEMASVTDGED- 483
+ S GR ++ + E E DLE + E R ++ +Y+ +++ ++ A+ +G+D
Sbjct: 497 VLDPMSMGRNEKRQEELEEERREFEDDLERDAEFRRDVPIYKMSEFELAQRAA-KNGKDC 555
Query: 484 ------------VPSVPLDELLADLDLK 499
VP + L+E+L +L ++
Sbjct: 556 AEPEEEGDEDDGVPQIALEEMLDELRIE 583
>gi|448100163|ref|XP_004199288.1| Piso0_002720 [Millerozyma farinosa CBS 7064]
gi|359380710|emb|CCE82951.1| Piso0_002720 [Millerozyma farinosa CBS 7064]
Length = 506
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/491 (43%), Positives = 316/491 (64%), Gaps = 13/491 (2%)
Query: 13 TVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
TV ++LCC CG+PM + MC C++ VDIT G+ + +S C C+ +LQPP WI
Sbjct: 16 TVATMLCCNCGVPMDGSSGLVMCYDCIKLTVDITAGIPRESNVSFCRNCERFLQPPGQWI 75
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
KA LES+ELL C++RLK LN+VRLV+A FIWTEPHS+RI++K+ VQ E ++ AI++Q++
Sbjct: 76 KADLESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRLKVTVQGEAISNAIIQQTF 135
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
VEYV C C+R + W A VQ+RQ V H+RTF YLEQLILKH+A + I
Sbjct: 136 EVEYVVIAMQCPDCAR-SYTANTWRATVQIRQKVAHKRTFLYLEQLILKHNAHLDTVSIQ 194
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ G+DFF+ ++HA K ++F+ V PVR++ ++LVS D S + +YK++FSVE+ PI
Sbjct: 195 ETKDGLDFFYSQKNHAAKMLDFLNTVVPVRTKKSEELVSQDIHSGSSSYKFSFSVELVPI 254
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
CR+DL+ LP +A LG + LV+C KV+N + LDP +L+ + YWR+ F SLL
Sbjct: 255 CRDDLVVLPKNLAQQLGYISRLVLCSKVSNLVQFLDPMSLQTADMVPQVYWRNPFPSLLD 314
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
+ QLVE+IVLDVE ++ G K+VLAD V+R SD G ND F +R+HLG +L+PGD
Sbjct: 315 TTQLVEFIVLDVEPTG---DMKG-KHVLADITVSRASDLGVNDNSFYVRSHLGAILHPGD 370
Query: 372 YALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDD 431
LGY L + N N D LPE IL+KK Y K + +++ LK + E ++
Sbjct: 371 SCLGYYLTNTNLNSDLFDSLDTDNLPEVILVKKFYTRKSKKSKNRKWK--LKRMAKEYNE 428
Query: 432 SK-----GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPS 486
S + +QEK ++YE FL++LEE+ ELR ++LY++++ + + + ++ P
Sbjct: 429 SNNESRLAKAEQEKAERDYELFLQELEEDEELRQTVNLYKSENANQQDEDDIEEDDEAPE 488
Query: 487 VPLDELLADLD 497
+ +DELL +LD
Sbjct: 489 IAVDELLDELD 499
>gi|156363113|ref|XP_001625892.1| predicted protein [Nematostella vectensis]
gi|156212746|gb|EDO33792.1| predicted protein [Nematostella vectensis]
Length = 428
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 215/490 (43%), Positives = 298/490 (60%), Gaps = 67/490 (13%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC+CG+P PN+ANMCV C+RS+VDITEG+ K + C C+ + PP W LES
Sbjct: 1 LCCQCGLPTPPNSANMCVGCIRSQVDITEGIPKQSTLYFCKNCERQVDPPNNWASCALES 60
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQ 137
+ELL C+K+LK LN+VRL++A F+WTEPHSKRIKVKL +QKEV+N IL+Q +VVEYV
Sbjct: 61 RELLAICLKKLKGLNKVRLIDAGFVWTEPHSKRIKVKLTIQKEVMNSTILQQVFVVEYVV 120
Query: 138 QDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGI 197
Q MCD+C R QA D W A VQ+RQ +H++TFFYLEQLI+KH+ +++ Q GI
Sbjct: 121 QGQMCDACHR-QAAQDFWKAVVQVRQKTSHKKTFFYLEQLIIKHNVHQNTVKVKQESDGI 179
Query: 198 DFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLI 257
DF++ ++ A KFV+F+ V P R + ++L+SHD +N FNYKYTFSVEI PICRE++I
Sbjct: 180 DFYYASKQDARKFVDFLQSVVPCRFKTSEKLISHDIHNNTFNYKYTFSVEIIPICREEVI 239
Query: 258 CLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVE 317
CLP K+A SLGN+G +V P R S K L+
Sbjct: 240 CLPLKLARSLGNIGKMV-------------P-------------GRHSLKKTLS------ 267
Query: 318 YIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIF--SIRTHLGHLLNPGDYALG 375
+ S+ G YV D K IF I +L H + ++
Sbjct: 268 -------LNSATFVCSGLHYV----------DVLKGLYIFLLIISFYLLHTV----FSCS 306
Query: 376 YDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGR 435
YD ++N ND L+K K +P+ IL+KKSY +KR R+R+ R+WKLK L+ E+ G
Sbjct: 307 YDFKNSNINDENLNKMKADKIPDVILVKKSYGDKRKRRRA--RNWKLKVLEKEI----GD 360
Query: 436 TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLAD 495
+Q++ K+Y+EFL DLEE+ LR N+++Y ++D+ P A + E++P + L E+L D
Sbjct: 361 INQDQFEKDYDEFLADLEEDKTLRQNVNIYVDRDHMPESDA---EDEEIPKISLQEMLED 417
Query: 496 LDLKSDDGEG 505
L L +D EG
Sbjct: 418 LKL--EDAEG 425
>gi|67522509|ref|XP_659315.1| hypothetical protein AN1711.2 [Aspergillus nidulans FGSC A4]
gi|40745675|gb|EAA64831.1| hypothetical protein AN1711.2 [Aspergillus nidulans FGSC A4]
gi|259487052|tpe|CBF85414.1| TPA: nonsense-mediated mRNA decay protein 3 (AFU_orthologue;
AFUA_2G16750) [Aspergillus nidulans FGSC A4]
Length = 511
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 293/471 (62%), Gaps = 20/471 (4%)
Query: 3 QDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDC 62
Q G +P T LC CG P+ +C C++ ++DI++G+Q+ +++ C +C+
Sbjct: 12 QADGASEIPTT----LCYNCGAPLV--GTTICPDCMKLQIDISQGIQREAVLNFCRDCER 65
Query: 63 YLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVL 122
+L PP +W A LES+ELL C+K+L+ LN++R+++A FIWTEPHS+RIKVKL +Q V
Sbjct: 66 WLLPPNSWQVAALESRELLALCLKKLRGLNKIRVIDAGFIWTEPHSRRIKVKLTIQDSVS 125
Query: 123 NGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHD 182
+G IL+Q++ V Y+ C C++ P+ W A+VQ+RQ V H+RTF YLEQLILKH
Sbjct: 126 DGVILQQTFEVIYIVMYQQCPECAK-SYTPNTWRASVQVRQQVLHKRTFLYLEQLILKHK 184
Query: 183 AAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKY 242
A I I + GIDFFF R+HA F++F+ PV +Q++S D ++ +YK+
Sbjct: 185 AHQNTINIKEAKNGIDFFFAQRNHAEAFIDFLHSAVPVEVTKSQQIISEDIHTSTKSYKF 244
Query: 243 TFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW 302
T+S +I PIC++DL+ LP K+A LGN+ PL++C ++ SI+ LDP TL+ L++ YW
Sbjct: 245 TYSAKIVPICKDDLVALPIKLAKQLGNISPLLLCNRIGTSISFLDPNTLQSADLNSRIYW 304
Query: 303 RSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTH 362
RS F SL ++ LVE+IVLDVE K+ ++ VAR SDF + F+ RTH
Sbjct: 305 RSPFTSLAEAKDLVEFIVLDVEPTGH----SRGKWFQSEVTVARASDFSGDKQYFT-RTH 359
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKP 417
LG +++PGD LGY L N N+ + D+ + +P+ IL+KK Y R +
Sbjct: 360 LGSIIHPGDSVLGYMLTGTNFNNAQFDEIESSNTYSSTIPDVILVKKFYPR---RSKHTK 416
Query: 418 RSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK 468
R+WKLK + E D ++E + ++E FLRD+EE+ ELR ++LY+NK
Sbjct: 417 RNWKLKRMATEHDPYLLPNNKESVENDFEMFLRDVEEDQELRATLALYKNK 467
>gi|169621570|ref|XP_001804195.1| hypothetical protein SNOG_13995 [Phaeosphaeria nodorum SN15]
gi|111057500|gb|EAT78620.1| hypothetical protein SNOG_13995 [Phaeosphaeria nodorum SN15]
Length = 512
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/502 (39%), Positives = 309/502 (61%), Gaps = 22/502 (4%)
Query: 11 PQTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
P+ ++LC CG P+ + C C++ + D+T G+ + ++ C +CD +L PP +
Sbjct: 12 PKNAATILCADCGAPVDGTISGAFCYDCIKLKTDVTGGVPREAVLHMCRDCDRWLSPPNS 71
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W+ A ES+ELL C+++L+ LN++R+++A FIWTEPHS+RIKVK+ VQ E+ GAIL+Q
Sbjct: 72 WVVAAPESRELLALCLRKLRGLNKLRIIDASFIWTEPHSRRIKVKITVQSEINEGAILQQ 131
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ E+ Q H C C++ + + W A VQ+RQ V H+RTF YLEQLILKH A I
Sbjct: 132 SFECEFTQNYHQCPDCAKSYTH-NTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDCIN 190
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I ++ GIDFFF R+HA F +F+ V PV + ++L+S D ++ ++K++FS EI
Sbjct: 191 IKEVHDGIDFFFAARNHATTFCDFLKAVVPVNIKKSEELISMDIHTSTRSFKFSFSCEIV 250
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC++DL+ LP +A GN+ PL IC ++ S+ LLDP TL+ + D YWR+ F+ L
Sbjct: 251 PICKDDLVVLPIPLAKKAGNIAPLTICTRIGTSVQLLDPATLQTADIATDLYWRTPFRPL 310
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
++L E+IVLD++ + + + LA+A VAR SD G ND + RTHLG +L+
Sbjct: 311 ADVQELTEFIVLDIDPLGKQ----QGRNFLAEATVARASDMGVNDQTYYCRTHLGGILHV 366
Query: 370 GDYALGYDLYSANNNDMELDKYKG-----LVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD +GY L + N N D +G +P+ +L+KK Y+ R +K R+W+LK
Sbjct: 367 GDSVMGYLLSNTNFNSELFDILEGSNKYSAQIPDVMLVKKHYQ--RGKKSKSKRNWRLKR 424
Query: 425 LDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLY------RNKDYQPSEMAS 477
++ + + R DQEKM +++E FL+D+EE+ +LR ++LY + ++ + E S
Sbjct: 425 MNRDEGEMLPRKQDQEKMERDFEMFLQDVEEDVDLRQGMALYKAQQEAKQREAEAMETES 484
Query: 478 VTDGEDVP--SVPLDELLADLD 497
D +D ++P+++LL D D
Sbjct: 485 EIDDDDDQGITIPMEQLLDDFD 506
>gi|401423822|ref|XP_003876397.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492639|emb|CBZ27916.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 563
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/532 (40%), Positives = 310/532 (58%), Gaps = 44/532 (8%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+TV V CC CG+ + N +NMC CLR+ VDIT+ LQK I+ HCPEC YLQPP+ W
Sbjct: 13 KTVPQVQCCVCGLVIDSNLSNMCPNCLRAHVDITDDLQKEYILIHCPECGRYLQPPKYWA 72
Query: 72 KAQLESKELLTFCVKRLK----------NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
+A+LES+ELLT C+KR+K N N+ +LV+A+F+WTEPHSKR+K++L VQKEV
Sbjct: 73 RAELESRELLTICLKRIKGLNSSAGSNSNANKAKLVDAKFLWTEPHSKRVKLRLTVQKEV 132
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
N +++Q+ VVEYV C C RV QW A VQLRQ V H++TF YLEQLILK
Sbjct: 133 FNNIVIQQACVVEYVVTWQQCTMCQRVATGQPQWDACVQLRQKVNHKKTFLYLEQLILKK 192
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
IRI G+DFFF ++SHA+ F+EF+ K APV R QLVSHD K+N
Sbjct: 193 RLHENFIRIEGQPDGLDFFFAHKSHAMNFLEFLNKTAPVTRRDAVQLVSHDSKNNTAVQH 252
Query: 242 YTFSVEISPICREDLICLPPK--VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
+TF+++I+P+CREDLI +P K SLG +GPLV+ KV +SI +DP TLR +
Sbjct: 253 FTFALDIAPLCREDLILIPYKDYYLKSLGGMGPLVLVHKVFSSIVFMDPRTLRAGEITGS 312
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
YW+ F SL TSR+LV++ VL+ +++ V Y L V + G+ + +
Sbjct: 313 LYWKKPFASLQTSRELVDFYVLECQLMP----VTNGTYQLGLVTVCLSDEVGEGRE-WIV 367
Query: 360 RTHLGHLLNPGDYALGYDLYS--ANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKP 417
++HLG +L+PGD GY L NN D++ ++YK L + IL++K + ++ R+
Sbjct: 368 QSHLGGVLHPGDLVKGYLLEGRILNNEDLDENRYKPEQLQDVILVRKFFPSQKARRNR-- 425
Query: 418 RSWKLKSLDMEVDDSK-----------GRTDQEKMNKEYEEFLRDLEENPELRFNISLYR 466
R WKLK LD+ + G +N++ EF ++E + ELR IS+YR
Sbjct: 426 RLWKLKKLDIVTSQGEATSISGPARRGGANASSGVNEDEYEFEDEIERDAELRKEISIYR 485
Query: 467 NKDYQPSEMASVT------------DGEDVPSVPLDELLADLDLKSDDGEGD 506
D + + D +++P + L+E+L +L ++ G D
Sbjct: 486 MMDEEIAARRGTAATAADAAENEYEDDDEIPEIALEEMLDELQIQDGAGPAD 537
>gi|429862074|gb|ELA36733.1| nonsense-mediated mrna decay protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 499
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/492 (42%), Positives = 312/492 (63%), Gaps = 27/492 (5%)
Query: 13 TVGSVLCCKCGIPM-APNAAN-MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
T ++LCC CG P+ AAN +C C++ VDI+ G+Q+ ++ C +CD +L PP +W
Sbjct: 2 TAATILCCNCGAPIDGTTAANALCFDCIKLTVDISNGVQREATLNFCRDCDRWLLPPTSW 61
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I A ES+ELL C+K+LK L++VR+++A F+WTEPHS+R+KVK+ +Q EV +G +L+QS
Sbjct: 62 IVAAPESRELLALCLKKLKGLHKVRIIDASFVWTEPHSRRVKVKITIQDEVQSGVLLQQS 121
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ ++ C C++ + W A VQ+RQ V H+RTF YLEQLI+KH A + I
Sbjct: 122 FEAVFIVAYQQCPDCAK-SYTANVWRACVQVRQKVLHKRTFLYLEQLIMKHGAHRDTLNI 180
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ GIDFFF R+ A KFV+F+ VAP R + ++L+S D ++ +YK+TFS E+ P
Sbjct: 181 KEAKDGIDFFFSARNQAEKFVDFLNSVAPCRVKKAQELISQDIHTSTKSYKFTFSAELIP 240
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
ICR+DL+ +P K+A SLGN+ PLVIC K+ ++ LLD TL+ + +D YWR+ F SL
Sbjct: 241 ICRDDLVAMPIKLAKSLGNISPLVICHKIGTAVYLLDTNTLQTASIPSDIYWRAPFNSLA 300
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
++ LVE+IV+D+E V K+ L + QV R +D G ND + RTHLG LL+ G
Sbjct: 301 DAKSLVEFIVMDIE----PTGVSRGKWQLGEVQVMRAADLGVNDKTYFARTHLGGLLHAG 356
Query: 371 DYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
D +GY L N N+ E D + G +P+ +L+KK Y KR +++ R+WKLK
Sbjct: 357 DSVMGYMLTGTNFNNPEFDAIEESHAYGSTIPDVVLVKKHYARKR---KTRTRNWKLKR- 412
Query: 426 DMEVDDSK---GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK--DYQPSE-----M 475
M D+ + + DQE+M++EYE+FLRD+EE+ E R +++YR + + QP++ +
Sbjct: 413 -MAKDEGELLPKKADQERMDEEYEQFLRDVEEDDEFRSTMAIYRAQKANNQPADPDAMSI 471
Query: 476 ASVTDGEDVPSV 487
A D ++ P V
Sbjct: 472 AETEDDDEAPRV 483
>gi|410076590|ref|XP_003955877.1| hypothetical protein KAFR_0B04460 [Kazachstania africana CBS 2517]
gi|372462460|emb|CCF56742.1| hypothetical protein KAFR_0B04460 [Kazachstania africana CBS 2517]
Length = 519
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/495 (41%), Positives = 301/495 (60%), Gaps = 25/495 (5%)
Query: 9 TVPQTV-GSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66
T P+T ++LCC+CG P+ MC C++ DIT+ + + +S C +C+ +LQP
Sbjct: 10 TDPKTPRATMLCCECGTPIDGSQGLVMCYDCIKLRADITKDIPREANVSFCRDCERWLQP 69
Query: 67 PRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAI 126
P W++A LES+ELL C++RLK LN+VRL++A FIWTEPHS+RIKVK+ VQ E + I
Sbjct: 70 PGQWVRANLESRELLAICLRRLKGLNKVRLIDASFIWTEPHSRRIKVKVTVQGEAMMNTI 129
Query: 127 LEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAAR 186
++Q++ VEYV C C+R + W A VQ+RQ V H+RTF YLEQLILK++A
Sbjct: 130 IQQTFEVEYVVVAMQCRDCAR-SFTANTWKATVQIRQKVPHKRTFLYLEQLILKNNAHVD 188
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
I I + G+DFF+ ++HAVK V+F+ PV+ + ++LVS D + +YK+++SV
Sbjct: 189 TISIKEAKDGLDFFYEQKNHAVKMVDFLNSNVPVKFKKSEELVSQDSHTGTSSYKFSYSV 248
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
E+ PIC++DL+ LP K++ +LGN+ V+C KV+ ++ LDP TL+ L A YWR+ F
Sbjct: 249 ELVPICKDDLVVLPKKISKALGNISQFVLCSKVSTTVQFLDPTTLQTADLSAQVYWRTPF 308
Query: 307 KSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
+L QLVE+IVLDVE+ N VLAD +AR SD G ND + ++THLG +
Sbjct: 309 SALADVSQLVEFIVLDVEL----TNKSAGNRVLADVTIARASDLGVNDQEYYVKTHLGGI 364
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
L+ GD +GY + ++N N D K +P+ +L+KK +K K R+WKLK +
Sbjct: 365 LHAGDSVMGYFIANSNYNSDLFDSLKYDYVPDVVLVKKL----YPKKAKKSRNWKLKRMA 420
Query: 427 MEVDDSKGRTD----------QEKMNKEYEEFLRDLEENPELRFNISLYR----NKDYQP 472
E D D E+ K+YE FL LEE+ +LR N++LY+ N+D +
Sbjct: 421 KEHGDIVASHDYTSSKVEKQEMERAEKDYELFLEQLEEDEDLRHNVNLYKTGMANQDIEG 480
Query: 473 SEMASVTDGEDVPSV 487
E +D E+ P V
Sbjct: 481 EEENEFSDDEEAPKV 495
>gi|146089650|ref|XP_001470437.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134070470|emb|CAM68813.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 563
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/529 (41%), Positives = 311/529 (58%), Gaps = 46/529 (8%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+ V V CC CG+ + N +NMC CLR+ VDIT+ LQK I+ HCPEC YLQPP+ W
Sbjct: 13 KAVPQVQCCVCGLVIDSNLSNMCPNCLRAHVDITDDLQKEYILIHCPECGRYLQPPKYWA 72
Query: 72 KAQLESKELLTFCVKRLK----------NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
+A+LES+ELLT C+KR+K N N+ +LV+A+F+WTEPHSKRIK++L VQKEV
Sbjct: 73 RAELESRELLTICLKRIKGLNSSAGSNSNANKAKLVDAKFLWTEPHSKRIKLRLTVQKEV 132
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
N +++Q+ VVEYV C +C RV QW A VQLRQ V H++TF YLEQLILK
Sbjct: 133 FNNIVIQQACVVEYVVTWQQCTTCQRVATGQPQWDACVQLRQKVNHKKTFLYLEQLILKK 192
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
IRI G+DFFF ++SHA+ F+EF+ K APV R QLVSHD K+N
Sbjct: 193 RLHENFIRIEGQPDGLDFFFAHKSHAMNFLEFLNKTAPVTRRDAVQLVSHDSKNNTAVQH 252
Query: 242 YTFSVEISPICREDLICLPPK--VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
+TF+++I+P+CREDLI +P K SLG +GPLV+ KV +SI +DP TLR +
Sbjct: 253 FTFALDIAPLCREDLILIPYKDYYLKSLGGMGPLVLVHKVFSSIVFMDPRTLRAGEITGA 312
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
YW+ F SL TSR+LVE+ VL+ +++ V Y L V + G+ + +
Sbjct: 313 LYWKKPFASLQTSRELVEFYVLECQLMP----VTNGTYQLGLVTVCLSDEVGEGRE-WIV 367
Query: 360 RTHLGHLLNPGDYALGYDLYS--ANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKP 417
++HLG +L+PGD GY L NN D++ ++YK L + IL++K + ++ R+
Sbjct: 368 QSHLGGVLHPGDLVKGYLLEGRILNNEDLDENRYKPEQLQDVILVRKFFPSQKARRNR-- 425
Query: 418 RSWKLKSLDMEVDDSK-----------GRTDQEKMNKEYEEFLRDLEENPELRFNISLYR 466
R WKLK LD+ + G + +N++ EF ++E + ELR I++YR
Sbjct: 426 RLWKLKKLDIVTSQGEATSISGPARRGGASANSGVNEDECEFEDEIERDAELRKEIAIYR 485
Query: 467 NKDYQPSEMASVT------------DGEDVPSVPLDELLADLDLKSDDG 503
D + + D +++P + L+E+L +L + DDG
Sbjct: 486 MMDEEIAARRGTAATAADAAENEYEDDDEIPEIALEEMLDELQI--DDG 532
>gi|332024621|gb|EGI64818.1| 60S ribosomal export protein NMD3 [Acromyrmex echinatior]
Length = 466
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/472 (43%), Positives = 299/472 (63%), Gaps = 18/472 (3%)
Query: 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLN 92
MCV CLR+ VDITEG+ K I C C+ YLQPP WI A LES+ELL+ C+K+LK LN
Sbjct: 1 MCVGCLRTHVDITEGIPKQATIQFCKGCERYLQPPSEWIHAALESRELLSLCLKKLKGLN 60
Query: 93 RVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANP 152
RV+LV+A FIWTEPHSKR+KVKL V EV+ G +LEQ +VVEY+ +C+ C R +A
Sbjct: 61 RVKLVDAGFIWTEPHSKRLKVKLTVHAEVIGGTVLEQVFVVEYIVNHQLCEDCHRTEAK- 119
Query: 153 DQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVE 212
D W A VQ+RQ T+++TF+YLEQLILKH A + I + +G+DF++ N + A K V+
Sbjct: 120 DYWRACVQVRQRATNKKTFYYLEQLILKHKAHEHTLGIKPIHEGLDFYYANEAAARKMVD 179
Query: 213 FVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGP 272
F+ V P + +H K+L+SHD SN +NYK+TF VEI P+ ++ ++CL K+A LG + P
Sbjct: 180 FLMTVMPCQYQHSKRLISHDCHSNLYNYKFTFCVEIVPLSKDSVVCLSRKLAQQLGGINP 239
Query: 273 LVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSE--- 329
+ + ++TN++ L+D + + + + YWR++F S+ +QL EYIV+D+E + +
Sbjct: 240 ICLVYRITNAVHLIDFLSGQIAEVSSTVYWRNNFNSICDPKQLTEYIVMDIEPIKYKDRK 299
Query: 330 ----VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNND 385
+K+++AD + + S+ G ND RTHLGH+L PGD GY L +N ND
Sbjct: 300 IFPGQGTISNKHIIADVWLVKASELGINDNPTHTRTHLGHILKPGDSVFGYALKDSNIND 359
Query: 386 MELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEY 445
DK +P+ IL+KK Y + +R K R WKLK + EV T N EY
Sbjct: 360 TNFDKLSEDSIPDIILVKKFYGHNKAARR-KARVWKLKHITDEV------TSMSTENNEY 412
Query: 446 EEFLRDLEENPELRFNISLYRN-KDYQPSEMASVTDGEDVPSVPLDELLADL 496
EFL +LEE+PE+R NI+++R+ + + P + + + +P + L+E+L DL
Sbjct: 413 NEFLDELEEDPEMRQNINIFRDVQKHIPVDTSEIDPS--IPQITLEEMLDDL 462
>gi|380475829|emb|CCF45046.1| NMD3 family protein [Colletotrichum higginsianum]
Length = 498
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/486 (41%), Positives = 308/486 (63%), Gaps = 21/486 (4%)
Query: 15 GSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
++LCC CG P+ A +C C++ VDI++G+Q+ ++ C +CD +L PP +W+
Sbjct: 5 ATILCCNCGAPIDGTTAAGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLLPPSSWVV 64
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
A ES+ELL C+K+LK LN++R+++A F+WTEPHS+R+KVK+ +Q EV G +L+Q++
Sbjct: 65 AAPESRELLALCLKKLKGLNKIRIIDASFVWTEPHSRRVKVKITIQDEVQTGVLLQQAFE 124
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
Y+ C C++ + W A+VQ+RQ V H+RTF +LEQLI+KH A + I +
Sbjct: 125 AIYIVAYQQCPDCAK-SYTANVWRASVQVRQKVLHKRTFLFLEQLIMKHGAHRDTLNIKE 183
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
GIDFFF R+ A KF +F+ V P +++ ++L+S D ++ ++K+TFSVE+ PIC
Sbjct: 184 AKDGIDFFFSARNQAEKFCDFLNSVVPCKAKKSQELISQDVHTSTKSFKFTFSVELVPIC 243
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ +P K+A + GN+ PLVIC K+ S+ LLDP TL+ + A YWR+ F SL
Sbjct: 244 RDDLVAMPIKLAKASGNISPLVICHKIGTSVYLLDPNTLQTADISAAIYWRAPFYSLADV 303
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
+Q VE+IV+D+E N+ K+ LA+ QVAR SD G ND + RTHLG+LL+ GD
Sbjct: 304 KQFVEFIVMDIE----PTNITKGKWRLAEVQVARASDLGVNDKTYFARTHLGNLLHAGDS 359
Query: 373 ALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
LGY L N N+ E D + +P+ +L+KK Y R++ + R+WKLK ++
Sbjct: 360 VLGYMLTGTNFNNEEFDAIEASGVYASTIPDVMLVKKHYPN---RRKHRNRNWKLKRMNK 416
Query: 428 -EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK-----DYQPSEMASVTDG 481
E + + DQ++MN++YE+FLRD+EE+ ELR ++LY+ + D +A DG
Sbjct: 417 DEGELLPKKADQDRMNEDYEQFLRDVEEDDELRATMALYKAQQAAKVDPDAMSIAETEDG 476
Query: 482 EDVPSV 487
+ VP V
Sbjct: 477 DGVPGV 482
>gi|157871103|ref|XP_001684101.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68127169|emb|CAJ05023.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 563
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/529 (41%), Positives = 312/529 (58%), Gaps = 46/529 (8%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+TV V CC CG+ + N +NMC CLR+ VDIT+ LQ+ I+ HCPEC YLQPP+ W
Sbjct: 13 KTVPQVQCCVCGLVIDSNISNMCANCLRAHVDITDDLQREYILIHCPECGRYLQPPKYWA 72
Query: 72 KAQLESKELLTFCVKRLK----------NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
+A+LES+ELLT C+KR+K N N+ +LV+A+F+WTEPHSKRIK++L VQKE+
Sbjct: 73 RAELESRELLTICLKRIKGLNSSAGSNSNANKAKLVDAKFLWTEPHSKRIKLRLTVQKEI 132
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
N +++Q+ VVEYV C C RV QW A VQLRQ V H++TF YLEQLILK
Sbjct: 133 FNNIVIQQACVVEYVVTWQQCTMCQRVATGQPQWDACVQLRQKVNHKKTFLYLEQLILKK 192
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
IRI G+DFFF ++SHA+ F+EF+ K APV R QLVSHD K+N
Sbjct: 193 RLHENFIRIEGQPDGLDFFFAHKSHAMNFLEFLNKTAPVTRRDAVQLVSHDSKNNTAVQH 252
Query: 242 YTFSVEISPICREDLICLPPK--VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
+TF+++I+P+CREDLI +P K SLG +GPLV+ KV +SI +DP TLR +
Sbjct: 253 FTFALDIAPLCREDLILIPYKDYYLKSLGGMGPLVLVHKVFSSIVFMDPRTLRAGEITGA 312
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
YW+ F SL TSR+LV++ VL+ +++ V Y L V + GK + +
Sbjct: 313 LYWKKPFASLQTSRELVDFYVLECQLMP----VTNGTYQLGLVTVCLSDEVGKGRE-WIV 367
Query: 360 RTHLGHLLNPGDYALGYDLYS--ANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKP 417
++HLG +L+PGD GY L NN D++ ++YK L + I+++K + +R R+
Sbjct: 368 QSHLGGVLHPGDLVKGYLLEGRILNNEDLDKNRYKPEQLQDVIIVRKFFPSQRARRNR-- 425
Query: 418 RSWKLKSLDMEVDDSK-----------GRTDQEKMNKEYEEFLRDLEENPELRFNISLYR 466
R WKLK LD+ + G + +N++ EF ++E + +LR I++YR
Sbjct: 426 RLWKLKKLDIVTSQGEATSISGPARRGGASANSGVNEDECEFEDEIERDADLRKEIAIYR 485
Query: 467 NKDYQPSEMASVT-----------DGED-VPSVPLDELLADLDLKSDDG 503
D + + +G+D +P + L+E+L +L + DDG
Sbjct: 486 MMDEEIAARRGAAATAAGAAENEYEGDDEIPEIALEEMLDELQI--DDG 532
>gi|398016987|ref|XP_003861681.1| hypothetical protein, conserved [Leishmania donovani]
gi|322499908|emb|CBZ34982.1| hypothetical protein, conserved [Leishmania donovani]
Length = 563
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/529 (41%), Positives = 310/529 (58%), Gaps = 46/529 (8%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
+ V V CC CG+ + N +NMC CLR+ VDIT+ LQK I+ HCPEC YLQPP+ W
Sbjct: 13 KAVPQVQCCVCGLVIDSNLSNMCPNCLRAHVDITDDLQKEYILIHCPECGRYLQPPKYWA 72
Query: 72 KAQLESKELLTFCVKRLK----------NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
+A+LES+ELLT C+KR+K N N+ +LV+A+F+WTEPHSKRIK++L VQKEV
Sbjct: 73 RAELESRELLTICLKRIKGLNSSAGSNSNANKAKLVDAKFLWTEPHSKRIKLRLTVQKEV 132
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
N +++Q+ +VEYV C +C RV QW A VQLRQ V H++TF YLEQLILK
Sbjct: 133 FNNIVIQQACLVEYVVTWQQCTTCQRVATGQPQWDACVQLRQKVNHKKTFLYLEQLILKK 192
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
IRI G+DFFF ++SHA+ F+EF+ K APV R QLVSHD K+N
Sbjct: 193 RLHENFIRIEGQPDGLDFFFAHKSHAMNFLEFLNKAAPVTRRDAVQLVSHDSKNNTAVQH 252
Query: 242 YTFSVEISPICREDLICLPPK--VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
+TF+++I+P+CREDLI +P K SLG +GPLV+ KV +SI +DP TLR +
Sbjct: 253 FTFALDIAPLCREDLILIPYKDYYLKSLGGMGPLVLVHKVFSSIVFMDPRTLRAGEITGA 312
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSI 359
YW+ F SL TSR+LVE+ VL+ +++ V Y L V + G+ + +
Sbjct: 313 LYWKKPFASLQTSRELVEFYVLECQLMP----VTNGTYQLGLVTVCLSDEVGEGRE-WIV 367
Query: 360 RTHLGHLLNPGDYALGYDLYS--ANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKP 417
++HLG +L+PGD GY L NN D++ ++YK L + IL++K + ++ R+
Sbjct: 368 QSHLGGVLHPGDLVKGYLLEGRILNNEDLDENRYKPEQLQDVILVRKFFPSQKARRNR-- 425
Query: 418 RSWKLKSLDMEVDDSK-----------GRTDQEKMNKEYEEFLRDLEENPELRFNISLYR 466
R WKLK LD+ + G + N++ EF ++E + ELR I++YR
Sbjct: 426 RLWKLKKLDIVTSQGEATSISGPSRRGGASANSGANEDECEFEDEIERDAELRKEIAIYR 485
Query: 467 NKDYQPSEMASVT------------DGEDVPSVPLDELLADLDLKSDDG 503
D + + D +++P + L+E+L +L + DDG
Sbjct: 486 MMDEEIAARRGTAATAADAAENEYEDDDEIPEIALEEMLDELQI--DDG 532
>gi|403354861|gb|EJY76990.1| Nonsense-mediated mRNA decay protein, putative [Oxytricha
trifallax]
Length = 608
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/474 (39%), Positives = 298/474 (62%), Gaps = 16/474 (3%)
Query: 4 DAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63
D +F+ + + CC CG+ PN +N C+ CL+S ++IT G+ K + + C EC+ Y
Sbjct: 57 DPSLFSAQK----IRCCDCGVMTTPNESNKCINCLKSHINITNGIPKQIDLFSCKECNRY 112
Query: 64 LQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
L+PP W+ +LES ELL C+K + L +V+L++A F+WTE HS+RIKVK+ +QKEVLN
Sbjct: 113 LRPP--WVNCELESPELLAVCLKHIHGLKKVKLIDAGFVWTEAHSRRIKVKITIQKEVLN 170
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
+L+QS+VVE+V + CD C + P W + VQ+RQ V H+RTF +LEQLI+KH A
Sbjct: 171 NTLLQQSFVVEFVIINKQCDECKKTYT-PHLWSSIVQVRQRVDHKRTFLFLEQLIIKHKA 229
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
A RAI I ++ GIDF F +++ + K ++F+ P +S+ +QL++ D +N F YKY+
Sbjct: 230 ADRAIGIKEVHDGIDFQFKSKADSAKLIDFISMTVPCKSKQSQQLINSDLTNNIFKYKYS 289
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
S++I+PIC++DL+ +P ++ LG +GP++I K++ SI ++D FT++ LD YW+
Sbjct: 290 TSIDIAPICKDDLVIIPKALSNQLGGIGPMIIVYKISTSIHIVDVFTMQTYELDQITYWK 349
Query: 304 SSFKSLLTSRQLVEYIVLDVEVVSSEVNV----GGSKYVLADAQVARVSDFGKNDTIFSI 359
F +L +L E+IV+++E + + NV K+ + +V R D+G NDT FSI
Sbjct: 350 HQFHALCGRDRLTEFIVVNIEEPNKDFNVSRAAAKQKFKMVSVEVQRKEDYGINDTTFSI 409
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
THLG LN D LG+D N ++++ K LP +L+KK+Y + R R + K R
Sbjct: 410 NTHLGETLNFFDTVLGFDFEQMNFSEIDEVKNMKRGLPSVVLVKKTYPKARQRNQ-KNRV 468
Query: 420 WKLKSLDMEVDDSKGRTDQEKM----NKEYEEFLRDLEENPELRFNISLYRNKD 469
WKLK+L+ E D +EK ++ + F++D+EE P+LR I L+++++
Sbjct: 469 WKLKTLEKETLDENNHHKKEKSKAKNQRDIDLFMQDIEEEPDLRQQIDLFKDEE 522
>gi|310795204|gb|EFQ30665.1| NMD3 family protein [Glomerella graminicola M1.001]
Length = 496
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/487 (41%), Positives = 310/487 (63%), Gaps = 20/487 (4%)
Query: 13 TVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
T ++LCC CG P+ A +C C++ VDI++G+Q+ ++ C +CD +L PP +W
Sbjct: 2 TNATILCCNCGAPIDGTTAAGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLLPPSSW 61
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+ A ES+ELL C+K+LK LN++R+++A F+WTEPHS+R+KVK+ +Q EV G +L+QS
Sbjct: 62 VVAAPESRELLALCLKKLKGLNKIRIIDASFVWTEPHSRRVKVKITIQDEVQTGVLLQQS 121
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ Y+ C C++ + W A+VQ+RQ V H+RTF +LEQLI+KH A + I
Sbjct: 122 FEAVYIVAYQQCPDCAK-SYTANVWRASVQVRQKVLHKRTFLFLEQLIMKHGAHRDTLNI 180
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ GIDF+F R+ A KF +F+ V P + + ++L+S D ++ +YK+TFSVE+ P
Sbjct: 181 KEAKDGIDFYFSARNQAEKFCDFLNSVVPCKVKKSQELISQDVHTSTKSYKFTFSVELIP 240
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
ICR+DL+ +P K+A + GN+ PLVIC K+ S+ LLDP TL+ + A YWR+ F SL
Sbjct: 241 ICRDDLVAMPIKLAKASGNISPLVICHKIGTSVYLLDPNTLQTADVSAPIYWRAPFHSLA 300
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
+Q VE+IV+D+E N+ K+ LA+ QVAR SD G ND + RTH+G+LL+ G
Sbjct: 301 DVKQFVEFIVMDIE----PTNITKGKWRLAEVQVARASDLGVNDKTYFARTHMGNLLHAG 356
Query: 371 DYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL 425
D LGY L N N+ E D + G +P+ IL+KK Y R++ + R+WKLK +
Sbjct: 357 DSVLGYMLTGTNFNNEEFDAIEESHAYGSTIPDVILVKKHYPN---RRKHRNRNWKLKRM 413
Query: 426 DM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD---YQPSEMA-SVTD 480
+ E + + DQ++MN++YE+FLRD+EE+ ELR ++LY+ + P M+ + T+
Sbjct: 414 NKDEGELLPKQADQDRMNEDYEQFLRDVEEDEELRATMALYKAQQPAKVDPDAMSIAETE 473
Query: 481 GEDVPSV 487
E VP V
Sbjct: 474 DEGVPRV 480
>gi|452978805|gb|EME78568.1| hypothetical protein MYCFIDRAFT_157335 [Pseudocercospora fijiensis
CIRAD86]
Length = 514
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/511 (41%), Positives = 321/511 (62%), Gaps = 28/511 (5%)
Query: 11 PQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
P T +VLC CG P+ A +C CL+ +DIT G+++ ++ C +CD + PP
Sbjct: 15 PTTAATVLCYNCGAPIDGTQAAGALCSDCLKLTIDITSGIERDGVLHMCRDCDRWHAPPA 74
Query: 69 TWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
WI A ES+ELL C+K+L+ L++ R+++A FIWTEPHS+RIKVK+ VQ+E L G IL+
Sbjct: 75 QWIVAAPESRELLALCLKKLRGLSKTRIIDASFIWTEPHSRRIKVKITVQQEALQGTILQ 134
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q++ VE+VQQ C C++ + + W A VQ+RQ V H+RTF YLEQLILK A I
Sbjct: 135 QTFDVEFVQQWKQCPDCAKSYTH-NTWRAVVQVRQKVPHKRTFLYLEQLILKQGAHKDTI 193
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
I ++ GIDFFF R+ A KF++F+ VAPV ++ +L+S D ++ +YK++FS E+
Sbjct: 194 NIKEVQNGIDFFFAERNSAEKFLDFLHSVAPVTTKKSHELISMDTHTSKKSYKFSFSCEL 253
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PIC++DL+ LP +A +GN+ PL +C +V ++ LDP TL+ L YWR+ F
Sbjct: 254 VPICKDDLVALPISIARQIGNISPLTLCYRVGTAVNFLDPNTLQTADLSTPIYWRAPFAP 313
Query: 309 LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
L + LVE+IV+D+E V V G +Y+LA+A V R SD ++T + RTHLG +L+
Sbjct: 314 LADVKDLVEFIVMDIEPVGP---VKG-RYLLAEATVVRASD--TSNTEYLCRTHLGSILH 367
Query: 369 PGDYALGYDLYSA--NNNDMEL----DKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
PGD +GY + NN + E +Y G +P+ IL+KK + +++ K++ R+WKL
Sbjct: 368 PGDSVMGYLMTGTQFNNENYEAIEESKQYSG-TIPDVILVKKKFAQRKKNKKNN-RNWKL 425
Query: 423 KSLDMEVDDSKGR-TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT-- 479
+ + E D K R D E+ +YE+FL+D+E +PELR ++LYR +Q E+ +++
Sbjct: 426 RRMAREESDMKARKQDLERDEIDYEQFLQDVEADPELRQGLNLYRK--HQKKEVDAMSEM 483
Query: 480 ---DGEDVP--SVPLDELLADL-DLKSDDGE 504
DGED ++P+D+L+ ++ D+ DD E
Sbjct: 484 ETDDGEDDEGLTIPMDQLIDEMEDMGMDDEE 514
>gi|325181410|emb|CCA15826.1| 60S ribosomal export protein NMD3 putative [Albugo laibachii Nc14]
Length = 526
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/502 (39%), Positives = 311/502 (61%), Gaps = 24/502 (4%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
++LCC C + N AN+C CL++E DI+E + K II C C + +PP WI A L
Sbjct: 15 TILCCICSTAIQANTANICSTCLKNETDISEKIPKEYIIQQCRGCLKWQRPP--WIAADL 72
Query: 76 ESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
ESKELL C+K++ L ++LV+A +IWTEPHSKR+++K+ +QKEVL+ +++Q+ ++ +
Sbjct: 73 ESKELLALCLKKISGLQHIKLVDAVWIWTEPHSKRLQLKITIQKEVLSKVVIQQALLITF 132
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
+ ++ CD C + N W A VQ+RQ V H+RTF++LEQLILK+ A A+A I
Sbjct: 133 IVRNLQCDECQSIFTN-QSWKAVVQVRQKVDHKRTFYFLEQLILKYQAHAKASNIETQPN 191
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
G+DFFF R+HA +FV+F+ + P++ + K+L+S D SN NYK+T+SVEI+P+C++D
Sbjct: 192 GVDFFFLERNHAQRFVDFLEECVPLKLKSAKKLISSDNHSNTHNYKFTYSVEIAPVCKDD 251
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQL 315
L+ LP K+A SLGN+ L + V++SI ++DPFTL+ +D +YWR F+ + + + L
Sbjct: 252 LVVLPTKLARSLGNIHNLCLVTSVSSSIHVVDPFTLQTAEIDCAKYWRHPFQGVRSVKAL 311
Query: 316 VEYIVLDVEVVSSEVNVGGSKYV-----LADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
+Y VLD+ G + +V L + +V R DFG NDT F THLG++L+ G
Sbjct: 312 KKYTVLDINPCIRSQGDGKAYHVNKKTRLVEVEVVRECDFGVNDTRFFAVTHLGNVLHVG 371
Query: 371 DYALGYDLYSA--NNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
D L YDL S+ N+ND++ + G+ LP+ +L++K + +R+K R+WKLK L+ E
Sbjct: 372 DTVLCYDLTSSVFNDNDIKPLEEVGITLPDVVLVRKKFS-----RRTKKRNWKLKQLE-E 425
Query: 429 VDDS-----KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNK-DYQPSEMASVTDGE 482
+ R + M EYE FL +LE++ +R I++Y+ + + Q S +G
Sbjct: 426 IHSGLPAQKNNRAADDSM--EYESFLDELEDDQAMRGQINIYKEQAEAQDSSQPDDDEGM 483
Query: 483 DVPSVPLDELLADLDLKSDDGE 504
S+PL E+L DL + E
Sbjct: 484 QASSIPLSEMLDDLTFEKKSSE 505
>gi|326436963|gb|EGD82533.1| CGI-07 protein [Salpingoeca sp. ATCC 50818]
Length = 463
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/418 (43%), Positives = 281/418 (67%), Gaps = 5/418 (1%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG+ + PN A MCV+C+RS VDIT+G+ K V + HC C Y PP+ W+ AQLE
Sbjct: 30 ILCCECGMQITPNPARMCVSCIRSRVDITDGIPKSVALFHCKGCGRYSNPPKGWLVAQLE 89
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL+ C+++L L++VRLV+A FIWTEPHSKR+KV+L +QKEVL+ IL+Q ++VE+V
Sbjct: 90 SRELLSLCLRKLTGLSKVRLVDAGFIWTEPHSKRVKVRLVIQKEVLSDVILQQEFIVEFV 149
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
++ C C R++A D W A VQ+RQ V H++TF++LEQ+I+KH A A+ RI+ + G
Sbjct: 150 VRNEFCSDCHRIEAK-DTWNAVVQVRQKVPHKKTFYHLEQIIIKHKAHAKTTRISSVSDG 208
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFFFG+ A +FV F+ V P+R++ ++L+S D SN +N+KYT+SVEI P+C+ D+
Sbjct: 209 VDFFFGSSHDARRFVNFLESVVPIRTKTSQRLISQDFNSNTYNFKYTYSVEIIPVCKNDI 268
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+C+ P+V+ G++ P+ +C +V + +DPFTL+ + +W+ F ++ + L+
Sbjct: 269 VCMSPQVSHREGHISPVCLCTQVGTVLHFIDPFTLQIAHVRNALFWQHPFNAIASHGSLI 328
Query: 317 EYIVLDVEVVSSEVN--VGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYAL 374
E+IV+DVE V E + V K++L + V R ++ F R+HLGH+L GD L
Sbjct: 329 EFIVMDVEPVYDEHHNEVTNGKFLLVNVVVVRANELETGGQEFQTRSHLGHILRYGDTVL 388
Query: 375 GYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDS 432
G+D +AN ND ++ P+ IL++KS+ E+R R+R + ++KLK L E D +
Sbjct: 389 GFDFTTANVNDEYFNRLDTSNFPDVILVRKSHAERRKRRRGR--NFKLKYLAKEEDGA 444
>gi|410079869|ref|XP_003957515.1| hypothetical protein KAFR_0E02270 [Kazachstania africana CBS 2517]
gi|372464101|emb|CCF58380.1| hypothetical protein KAFR_0E02270 [Kazachstania africana CBS 2517]
Length = 519
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/502 (41%), Positives = 312/502 (62%), Gaps = 26/502 (5%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q +VLCC CG P+ MC C++ VDI+EG+ + +S C C+ +LQPP W
Sbjct: 17 QMGATVLCCNCGTPIDGSGGLVMCYDCIKMTVDISEGIPREANVSFCRNCERFLQPPGQW 76
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI+VKL VQ E + G I++Q+
Sbjct: 77 IRADLESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRVKLTVQGEAMAGTIIQQT 136
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I
Sbjct: 137 FEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 195
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + + YK+++SVEI P
Sbjct: 196 SESRDGLDFFYAQKNHAVKMIDFLNSVVPIKYKKSEELISQDTHTGSSTYKFSYSVEIVP 255
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
ICR+DL+ LP K+A S+G++ V+C K++N++ +DP TL+ L YWR +F L
Sbjct: 256 ICRDDLVVLPKKLAKSMGDISQFVLCSKISNTVQFIDPTTLQIADLSPSVYWRYNFPPLA 315
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
+ QLVE+IVLDVE + K VLAD VAR SD G ND ++ I++HLG +++ G
Sbjct: 316 DASQLVEFIVLDVE----STGISRGKNVLADVCVARASDLGVNDQVYYIKSHLGGIIHAG 371
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME-- 428
D +GY + ++N N D + +P+ +L+KK Y+ K + R+WKLK + E
Sbjct: 372 DTVMGYFVSNSNYNSDLFDGLQLDYVPDVVLVKKLYKRKNKKN----RNWKLKRMARERA 427
Query: 429 -------VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT-- 479
+D R + E+ ++YE FL++LEE+ ELR I+LY+N+ QP T
Sbjct: 428 DIDASQDYNDRTQRQEMERAERDYELFLQELEEDEELRQKINLYKNQK-QPENGVQSTVD 486
Query: 480 ----DGEDVPSVPLDELLADLD 497
+ ED P + +DELL +LD
Sbjct: 487 DGDDEDEDAPEINIDELLDELD 508
>gi|402587812|gb|EJW81746.1| NMD3 family protein [Wuchereria bancrofti]
Length = 480
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/494 (41%), Positives = 297/494 (60%), Gaps = 36/494 (7%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG + PNA NMC+AC+RS +DITEG+ K C C+ +L PP W+ A+
Sbjct: 12 GKILCCQCGASIEPNAMNMCIACVRSRIDITEGIPKQYRAFMCKFCNRWLVPPNGWLHAE 71
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
ESKE+L+ +K+LK + +VRL +A F+WTEPHSKR+K+KL +QKEVL GA+L+Q ++V
Sbjct: 72 RESKEMLSILLKKLKPTMTKVRLTDASFVWTEPHSKRVKLKLTIQKEVLTGAVLQQVFIV 131
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
E+V + MCD C RV+A D W A VQ H A I +
Sbjct: 132 EFVVMNQMCDDCRRVEAK-DFWRACVQ--------------------HSAHLNTTAIKPV 170
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DFF+ A KF++F+ P + + ++LV+HD KSN ++YK+TF VE+ PICR
Sbjct: 171 ATGVDFFYAKLQDARKFIDFITSHLPCKYSYAQELVTHDVKSNIYDYKHTFCVEVVPICR 230
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
DL+CLP K A +LGN+ LV+C++V I+++DP TL+ ++A QYWR F++L S+
Sbjct: 231 GDLVCLPKKTAQALGNMNQLVVCLRVNTVISVIDPSTLQIADINATQYWRDPFQTLCQSK 290
Query: 314 QLVEYIVLDVEVVS-SEVNVGGS----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
+L E+ V+DVE + ++ G S K+ LAD V + G+ + R+HLGHLL
Sbjct: 291 RLSEFYVVDVEDIDFIQLTAGCSHLSTKHRLADIWVVPSNQIGQENQEVCTRSHLGHLLK 350
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LGYDL S+N N LD + + + IL++K Y+ ++R R+WKLK L
Sbjct: 351 PGDLVLGYDLRSSNVNSALLDDMRTDRIADIILVRKVYDRYIRQER---RNWKLKRL--- 404
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
+ + D M E+E FL DLEE+ ++R I++YR+ Q + D+P P
Sbjct: 405 IQNDGDVYDSSSMQNEFENFLEDLEEDEQMRQKINIYRDNAKQLVYSKDI--ASDLPPGP 462
Query: 489 -LDELLADLDLKSD 501
L E+L DLDL +D
Sbjct: 463 SLHEMLDDLDLNAD 476
>gi|389628958|ref|XP_003712132.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae 70-15]
gi|351644464|gb|EHA52325.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae 70-15]
gi|440473912|gb|ELQ42684.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae Y34]
gi|440484141|gb|ELQ64279.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae P131]
Length = 525
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/505 (41%), Positives = 320/505 (63%), Gaps = 26/505 (5%)
Query: 12 QTVGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
Q ++LCC CG P+ A +C C+++ DI++G+Q+ ++ C +CD +L PP +
Sbjct: 21 QNGATILCCNCGAPIDGTTATGALCYDCVKTTHDISQGVQREAVLHFCRDCDRWLLPPSS 80
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
WI A ES+ELL C+K+LK LN+VR+V+A FIWTEPHS+R+++KL +Q V G +L+Q
Sbjct: 81 WIMAAPESRELLALCLKKLKGLNKVRIVDASFIWTEPHSRRVRLKLTIQDAVSEGVLLQQ 140
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
S+ V Y+ C C++ + W A+VQ+RQ V H+RTF +LEQLILKH A I
Sbjct: 141 SFEVIYIVSYQQCPDCAK-SYTANVWRASVQVRQKVLHKRTFLFLEQLILKHGAHRDTIN 199
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + GIDFFF R+ A KFV+F+ PVR++ ++L+S D ++ +YK+TF VE+
Sbjct: 200 IKEAKDGIDFFFSARNQAEKFVDFLHSSVPVRTKKSQELISQDIHTSTKSYKFTFLVELI 259
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PIC+EDL+ LP K+A +GN+ PLV+C ++ S+ LDP TL+ + A YWR+ F+++
Sbjct: 260 PICKEDLVVLPIKLAKQIGNISPLVLCHRIGTSVNFLDPATLQTAEVSAPIYWRAPFRAI 319
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
S+ LVE+IV+DVE S V+ G ++ L +A VAR SD G ND + RTHL LL+
Sbjct: 320 AESKDLVEFIVMDVE--PSGVHKG--RWSLGEATVARASDLGVNDRTYFARTHLSGLLHA 375
Query: 370 GDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
GD +GY L N N+ E + G +P+ +L+KK Y+ +R R +++ +WKLK
Sbjct: 376 GDSVMGYMLTGTNFNNDEFQALEDSNSFGSTIPDVVLVKKHYQRRRNRNKNR--NWKLKR 433
Query: 425 LDM-EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN--KDYQP--------- 472
++ E + + DQE+++ EYE+FLRD+EE+ ELR ++LY+N K +P
Sbjct: 434 MNKDEGELLPKKADQERLDAEYEQFLRDVEEDEELRATLALYKNTKKTKKPDADAMSVAE 493
Query: 473 SEMASVTDGEDVPSVPLDELLADLD 497
+EM + ++ P V +DELL D++
Sbjct: 494 TEMTYDDEDDNAPKVSMDELLDDME 518
>gi|154339277|ref|XP_001562330.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062913|emb|CAM39360.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 563
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/532 (41%), Positives = 310/532 (58%), Gaps = 50/532 (9%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
TVPQ V CC CG+ + N +NMC CLR+ VDIT+ LQK I+ HCPEC YLQPP+
Sbjct: 14 TVPQ----VQCCLCGLVIDSNLSNMCPNCLRAHVDITDNLQKEYILIHCPECGRYLQPPK 69
Query: 69 TWIKAQLESKELLTFCVKRLKNLN----------RVRLVNAEFIWTEPHSKRIKVKLKVQ 118
W +A+LES+ELLT C+KR+K LN + RLV+A+F+WTEPHSKRIK++L VQ
Sbjct: 70 YWARAELESRELLTICLKRIKGLNSSAGSNSSAGKARLVDAKFLWTEPHSKRIKLRLTVQ 129
Query: 119 KEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLI 178
KEV + +L+Q+ +VEYV C C +V QW A VQLRQ V+H++TF YLEQLI
Sbjct: 130 KEVFHHVVLQQACLVEYVVTWQQCSVCQKVATGQPQWDACVQLRQKVSHKKTFLYLEQLI 189
Query: 179 LKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
LK IRI G+DFFF ++SHA+ F+EF+ K APV R QLVSHD K+N
Sbjct: 190 LKKRLHENFIRIEGQPDGLDFFFAHKSHAMNFLEFLNKTAPVTRRDAVQLVSHDSKNNTA 249
Query: 239 NYKYTFSVEISPICREDLICLPPK--VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFL 296
+TF+++I+P+CREDLI +P K SLG +GPLV+ KV +SI +DP TLR +
Sbjct: 250 VQHFTFALDIAPLCREDLILIPYKDYYLKSLGGMGPLVLVHKVFSSIVFMDPRTLRAGEI 309
Query: 297 DADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTI 356
YW+ F SL TSR+LVE+ VL+ +++ V Y L V + G+
Sbjct: 310 TGSLYWKKPFASLQTSRELVEFYVLECQLMP----VTNGTYQLGLVTVCLSDEVGEGRE- 364
Query: 357 FSIRTHLGHLLNPGDYALGYDLYSA--NNNDMELDKYKGLVLPETILIKKSYEEKRLRKR 414
+ +++HLG +L+PG GY L NN D++ ++YK L + IL++K + ++ R+
Sbjct: 365 WIVQSHLGGVLHPGSLVKGYLLEGRIFNNEDLDENRYKPEQLQDVILVRKVFPSQKARRH 424
Query: 415 SKPRSWKLKSLDM-----------EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNIS 463
R WKLK L++ +D G N + EF ++E + ELR +++
Sbjct: 425 R--RLWKLKKLEIVTSQGGATSISGLDSRGGANASGGANDDEGEFEDEIERDAELRKDVA 482
Query: 464 LYRNKDYQPSEMAS------------VTDGEDVPSVPLDELLADLDLKSDDG 503
+YR D + D ++VP + L+E+L +L + DDG
Sbjct: 483 IYRMMDKEIEARGGPIAAAADAAEDEYEDDDEVPEIALEEMLDELQI--DDG 532
>gi|340054441|emb|CCC48737.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 545
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 221/528 (41%), Positives = 309/528 (58%), Gaps = 36/528 (6%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
V VLCC CG+ + N +NMC +CLRS VDITE +QK I+ +CPEC YLQPP+ W +
Sbjct: 15 AVPKVLCCVCGLLIDSNPSNMCSSCLRSHVDITESVQKEYIVVYCPECSRYLQPPQYWTR 74
Query: 73 AQLESKELLTFCVKRLKNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
A LES ELLT C+ R+K LNR +LV+A+FIWTEPHSKR+KVKL +QKEV+ I++Q+
Sbjct: 75 ANLESHELLTICLMRIKGLNRNMFKLVDAKFIWTEPHSKRLKVKLVLQKEVMTNIIIQQA 134
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
VVEYV C +C +V QW A VQLRQ V H++TF +LEQLILKH IR+
Sbjct: 135 CVVEYVVLWQQCPTCQKVATGQPQWDACVQLRQKVAHKKTFLFLEQLILKHKVHENFIRV 194
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
G+DFFFG++SHA+ F+EF+ + +PV R QLVSHD K+N +TFS+EI+P
Sbjct: 195 ETQPGGLDFFFGHKSHALNFLEFIDRNSPVTRRDAVQLVSHDSKNNTAVQHHTFSLEIAP 254
Query: 251 ICREDLICLPPK-VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
+CREDL+ LP K LG LGPLV+ KV +SI LLDP TLR YW+ F L
Sbjct: 255 LCREDLLLLPYKNYYQKLGGLGPLVLVHKVYSSIVLLDPKTLRASEFTGTYYWKKPFLPL 314
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ SR++ E+ VL + + +Y + V + G+ + + +HLG L P
Sbjct: 315 MNSREMTEFYVLQC----TPTGITNGRYQVGVVTVCLSGEVGQGRE-WIVTSHLGGQLQP 369
Query: 370 GDYALGYDLYSANNNDMELD--KYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
GD A+GY L + N E D +Y+ L E +L+ K + +R R+ R W+LK LD+
Sbjct: 370 GDLAMGYLLQGRSFNHEEWDSQRYRDEQLQEVVLVHKRFPSQRARRHK--RLWRLKRLDV 427
Query: 428 --EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD----- 480
++G QE+ +E EF +LE +PELR ++ +Y+ + + + A
Sbjct: 428 LEPAVVARGARQQEEAEEERLEFEDELERDPELRRDVPIYKKLESEVDQCAGKWTKRHGD 487
Query: 481 -------------GEDVPSVPLDELLADLDLK----SDDGEGDDSMRE 511
GED+P V L+E+L +L ++ + E DD + E
Sbjct: 488 GVAGDASPEDDDYGEDIPQVSLEEMLNELRIEDEVFDETDENDDGLAE 535
>gi|261329139|emb|CBH12118.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 542
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/512 (41%), Positives = 307/512 (59%), Gaps = 37/512 (7%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T+ VLCC CG+ + N +NMC +CLRS VDITE +QK II +CPEC YLQPP+ W +
Sbjct: 15 TIPKVLCCVCGLLIDSNPSNMCSSCLRSHVDITESVQKEYIIVYCPECSRYLQPPQYWTR 74
Query: 73 AQLESKELLTFCVKRLKNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
A LES+ELLT C+KR+K L+R +LV+A+FIWTEPHSKR+KVKL +QKEV++ +++Q+
Sbjct: 75 ADLESRELLTICLKRVKGLSRNVFKLVDAKFIWTEPHSKRLKVKLVLQKEVMSNIVIQQA 134
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
V+EYV C +C +V QW A VQLRQ V H++TF YLEQLILKH IR+
Sbjct: 135 CVIEYVVVWQQCPTCQKVATGQPQWDACVQLRQKVAHKKTFLYLEQLILKHKLQENFIRV 194
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
G+DFFF ++SHA+ F+EFV + +PV R QLVSHD K+N +TFS+EI+P
Sbjct: 195 EAQPDGLDFFFAHKSHALNFLEFVSRNSPVTRRDAVQLVSHDSKNNTAVQHHTFSLEIAP 254
Query: 251 ICREDLICLPPK-VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
+CREDL+ LP + + LG LGPLV+ KV +S+ L+DP TLR YW+ F L
Sbjct: 255 LCREDLVLLPYQSYYLKLGGLGPLVLVHKVYSSVVLVDPRTLRANEFTGTYYWKKPFLPL 314
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ SR++ E+ VL + V +Y L V S+ G + + +HLG LL P
Sbjct: 315 MNSREMTEFYVLQ----CTPTGVTNGRYHLGVVTVCLSSEVGYGRE-WIVTSHLGGLLQP 369
Query: 370 GDYALGYDL--YSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
GD A+GY L + N+ + E +KYK L E +L++K + +R R+ R+WKLK LD+
Sbjct: 370 GDLAMGYLLEGRTFNHEEWENNKYKQDQLQEVVLVRKHFPAQRARRHR--RNWKLKRLDV 427
Query: 428 ------EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT-- 479
E + + +E+ + +E RD+ ELR ++ +Y+ D + +E
Sbjct: 428 MDPSCAERNARRQEEQEEERLEFEDELERDV----ELRRDVPIYKMLDSELAERVVKKNE 483
Query: 480 -------------DGEDVPSVPLDELLADLDL 498
D ++ P + L+E+L +L L
Sbjct: 484 GKGNANPENECDDDADEAPQIALEEMLDELRL 515
>gi|299472700|emb|CBN79871.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 565
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/466 (39%), Positives = 291/466 (62%), Gaps = 17/466 (3%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
++LCC C +P+ PN +MCV C+R++VDITEG+ ++ + C C YL+P W++ +L
Sbjct: 25 TILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRP--GWVECKL 82
Query: 76 ESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
ES+EL+ C++++ L +V+LV+A +IWTEPHS+R+KVKL VQKEV NGA+L+Q+ VV +
Sbjct: 83 ESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKLTVQKEVGNGAVLQQAMVVTF 142
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
V ++ CD+C+ + + W A VQ+RQ V H+RTFFYLEQLILKH+A ++ I
Sbjct: 143 VVRNQQCDTCAAAFTD-NTWTAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFKD 201
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
G+DF+F +SH+ +FV+F+ V P + +H K+LVS D SN FN+ YT+ V + P+C++D
Sbjct: 202 GMDFYFTEKSHSARFVDFLEGVVPTKVKHSKKLVSADNHSNIFNFHYTYLVTLVPVCKDD 261
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQL 315
L+ LP ++A SLGN+ L + ++T+++ +DP T + + ++YWR F SLL+S +L
Sbjct: 262 LVLLPKRLAESLGNISRLAVAQRITSAVQFVDPLTAQTADVTEEKYWRYEFPSLLSSTRL 321
Query: 316 VEYIVLDVEVVSSEVNVGGS-------KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
V Y+VL E + + K +A+ ++AR D G+ND + +HLGH+L
Sbjct: 322 VPYVVLGTEPLPEKARPSAPRRGHRIRKARVAEVELARECDLGRNDDRVTAVSHLGHILR 381
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKP-RSWKLKSLDM 427
GD L YD+ SAN + E LP+ +L++K Y K R WKL L+
Sbjct: 382 AGDTVLAYDVSSANLPEGEATGDLKGRLPDVVLVRKVYPRHDREGGGKADRHWKLGELEK 441
Query: 428 EVDDSKG------RTDQEKMNKEYEEFLRDLEENPELRFNISLYRN 467
+ D G + D+ K+YE FL+ LE + ++R ++LY+
Sbjct: 442 DGGDGGGGGGVSEKRDEAAAEKDYERFLQQLESDKDMRRQVNLYKQ 487
>gi|72390854|ref|XP_845721.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176159|gb|AAX70276.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70802257|gb|AAZ12162.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 542
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/512 (41%), Positives = 307/512 (59%), Gaps = 37/512 (7%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T+ VLCC CG+ + N +NMC +CLRS VDITE +QK II +CPEC YLQPP+ W +
Sbjct: 15 TIPKVLCCVCGLLIDSNPSNMCSSCLRSHVDITESVQKEYIIVYCPECSRYLQPPQYWTR 74
Query: 73 AQLESKELLTFCVKRLKNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
A LES+ELLT C+KR+K L+R +LV+A+FIWTEPHSKR+KVKL +QKEV++ +++Q+
Sbjct: 75 ADLESRELLTICLKRVKGLSRNVFKLVDAKFIWTEPHSKRLKVKLVLQKEVMSNIVIQQA 134
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
V+EYV C +C +V QW A VQLRQ V H++TF YLEQLILKH IR+
Sbjct: 135 CVIEYVVVWQQCPTCQKVATGQPQWDACVQLRQKVAHKKTFLYLEQLILKHKLQENFIRV 194
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
G+DFFF ++SHA+ F+EFV + +PV R QLVSHD K+N +TFS+EI+P
Sbjct: 195 EAQPDGLDFFFAHKSHALNFLEFVSRNSPVTRRDAVQLVSHDSKNNTAVQHHTFSLEIAP 254
Query: 251 ICREDLICLPPK-VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
+CREDL+ LP + + LG LGPLV+ KV +S+ L+DP TLR YW+ F L
Sbjct: 255 LCREDLVLLPYQSYYLKLGGLGPLVLVHKVYSSVVLVDPRTLRANEFTGTYYWKKPFLPL 314
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ SR++ E+ VL + V +Y L V S+ G + + +HLG LL P
Sbjct: 315 MNSREMTEFYVLQ----CTPTGVTNGRYHLGVITVCLSSEVGYGRE-WIVTSHLGGLLQP 369
Query: 370 GDYALGYDL--YSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
GD A+GY L + N+ + E +KYK L E +L++K + +R R+ R+WKLK LD+
Sbjct: 370 GDLAMGYLLEGRTFNHEEWENNKYKQDQLQEVVLVRKHFPAQRARRHR--RNWKLKRLDV 427
Query: 428 ------EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT-- 479
E + + +E+ + +E RD+ ELR ++ +Y+ D + +E
Sbjct: 428 MDPSCAERNARRQEEQEEERLEFEDELERDV----ELRRDVPIYKMLDSELAERVVKKNE 483
Query: 480 -------------DGEDVPSVPLDELLADLDL 498
D ++ P + L+E+L +L L
Sbjct: 484 GKGNANPENECDDDADEAPQIALEEMLDELRL 515
>gi|342181787|emb|CCC91266.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 542
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 220/511 (43%), Positives = 306/511 (59%), Gaps = 32/511 (6%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
TV VLCC CG+ + N +NMC +CLRS VDITE LQK I+ +CPEC YLQPP+ W +
Sbjct: 15 TVPKVLCCMCGLLIDSNPSNMCSSCLRSHVDITESLQKEYIVVYCPECSRYLQPPQYWSR 74
Query: 73 AQLESKELLTFCVKRLKNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
A+LES+ELLT C+KR+K L R +LV+A+F+WTEPHSKR+KVKL +QKEV++ +++Q+
Sbjct: 75 AELESRELLTICLKRVKGLGRNAFKLVDAKFVWTEPHSKRLKVKLVLQKEVMSNIVIQQA 134
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
VVEYV C +C +V QW A VQLRQ V H++TF YLEQLILKH IR+
Sbjct: 135 CVVEYVVVWQQCPTCQKVATGQPQWDACVQLRQKVLHKKTFLYLEQLILKHRLQENFIRV 194
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
G+DFFF ++SHA+ F+EFV + +PV R QLVSHD K+N +TFS+EI+P
Sbjct: 195 EAQPDGLDFFFAHKSHAMNFLEFVNRNSPVTRRDAVQLVSHDSKNNTAVQHHTFSLEIAP 254
Query: 251 ICREDLICLP-PKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
+CREDL+ LP + LG LGPLV+ KV ++I L+DP TLR YW+ F L
Sbjct: 255 LCREDLVILPYQNYYLKLGGLGPLVLVHKVYSNIVLVDPRTLRANEFTGTYYWKKPFLPL 314
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ SR++VE+ VL + V +Y L V + G + + +HLG L+ P
Sbjct: 315 MNSREMVEFYVLQ----CTPTGVTNGRYHLGVITVCLSEEVGCGRE-WIVTSHLGGLVQP 369
Query: 370 GDYALGYDLYSANNNDMELDK--YKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD- 426
GD +GY L + N E D YK L E +L++K + +R R+ R+WKLK LD
Sbjct: 370 GDLVMGYLLEGRSFNHEEWDSNCYKEEQLQEVVLVRKHFPSQRARRHK--RNWKLKHLDV 427
Query: 427 MEVDDSKGRT-DQEKMNKEYEEFLRDLEENPELRFNISLYRN------------------ 467
M+ + + T QE++++E EF +LE + ELR ++ +YR
Sbjct: 428 MDPNCTNNNTRRQEELDEERREFEDELERDVELRRDVPIYRMLDSEIAERNGKRDAGHGV 487
Query: 468 KDYQPSEMASVTDGEDVPSVPLDELLADLDL 498
KD E D + VP + L+E+L +L +
Sbjct: 488 KDAGAREAVGDDDEDGVPQIALEEMLDELRI 518
>gi|313233349|emb|CBY24463.1| unnamed protein product [Oikopleura dioica]
Length = 494
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/495 (41%), Positives = 314/495 (63%), Gaps = 28/495 (5%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
TVG +LCC+CG+P+ PN N CV CL+S+VDIT G+ + +++ C CD YLQPP +WI+
Sbjct: 10 TVGRILCCQCGVPIEPNPTNTCVTCLKSQVDITAGIPRQSVVNFCKGCDRYLQPPTSWIR 69
Query: 73 AQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A+LES+ELLT +K+LK +L RL +A FIWTEPH KRIK+KL VQKE+ GA+LEQ
Sbjct: 70 AELESRELLTLLIKKLKGSLADARLTDASFIWTEPHCKRIKIKLTVQKEIQEGAVLEQIV 129
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
+E+V Q C C RV+A + W + VQ+RQ V H+RTF YLEQ+ILK++ +RI
Sbjct: 130 PIEFVVQGQQCTDCQRVEAK-NFWKSVVQVRQKVKHKRTFLYLEQVILKYNMFENTLRIG 188
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
G+DFF+G + K VEF+ +V P++ + ++LV HD + +NYK T+ E+ +
Sbjct: 189 PTQHGLDFFYGRPQDSRKLVEFLQQVVPIKYKTAQKLVGHDTHNATYNYKTTYHCELPVV 248
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C++DL+CL K+A +GN+G L+IC++VT++I L+DP TL+ +D YW + F+ + +
Sbjct: 249 CKDDLVCLDKKLAAKIGNMGQLLICLRVTSTIQLIDPATLQLREVDGSHYWANPFEPIAS 308
Query: 312 SRQLVEYIVLDVEVVSS-----EVNVG--GSKYVLADAQVARVSDFGKNDTIFSIRTHLG 364
S++LV+++V+D E++ + + G K+ LAD V R + G ++ RTHLG
Sbjct: 309 SKRLVKFVVMDKELLRTNDRNHKAGEGKLSFKHQLADLYVIREDELGTHEDYIHCRTHLG 368
Query: 365 HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKS 424
L+ GD LGYD+ + N N LD G + +L++K Y + R+R++ R +KL+
Sbjct: 369 QHLDVGDEVLGYDMKNMNCNSEALDGMDG-NHADAVLVRKVYADS--RRRTQLRKFKLRR 425
Query: 425 -LDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
++ + DD +++ + +LEE+PE R N++LYRN D A+ +D ED
Sbjct: 426 VIEYKADDD---------DEDVQRMEEELEEDPEFRTNVNLYRNPD------ANFSDAED 470
Query: 484 VPSVPLDELLADLDL 498
+P V L ELL ++L
Sbjct: 471 MPKVDLSELLESVNL 485
>gi|209876259|ref|XP_002139572.1| NMD3 family protein [Cryptosporidium muris RN66]
gi|209555178|gb|EEA05223.1| NMD3 family protein [Cryptosporidium muris RN66]
Length = 554
Score = 363 bits (933), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 189/467 (40%), Positives = 290/467 (62%), Gaps = 23/467 (4%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
++CC CGI N + MC+ C+RSEVDITEG+ + VI+ +C C + +PP WI +LE
Sbjct: 19 MMCCICGITTDINPSRMCINCIRSEVDITEGISRQVILPYCKHCRRFQKPP--WISCELE 76
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+++ LN VRL++A FIWTEPHS+R+KV+ +QKEV+NGAI++Q+ +VE+
Sbjct: 77 SRELLALCLKKIRGLNNVRLIDASFIWTEPHSRRLKVRCVIQKEVMNGAIMQQTIIVEFY 136
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
Q CD C R P W + VQ+RQ V H+RTF YLEQLILKH A + I + G
Sbjct: 137 MQGQQCDDCKR-SFTPHIWNSVVQIRQKVPHKRTFLYLEQLILKHGAHEKVSNIVEKTDG 195
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF F ++HA K V+FV + + +QL+SHD SN + K+TFSVE+ P+CR+DL
Sbjct: 196 LDFQFQQKTHAQKLVDFVIHYFISKVKTSRQLISHDSHSNTHHNKFTFSVELCPVCRDDL 255
Query: 257 ICLPPKVAVSL-GNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR---------SSF 306
I +P + +L G + V+C K+++ + LLDPFT + L ++YW+ +F
Sbjct: 256 IFIPKHLCTNLFGGISSFVLCSKISSRMYLLDPFTGKEAELANEKYWQYAGLSTNNIGAF 315
Query: 307 KSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
+L LV++ VL+VE +++ G K V+A+ +V + +D G+ D+ ++THLG +
Sbjct: 316 AIILNKLHLVDFYVLNVEKDLTQL-CGNKKIVMAEVEVCKPNDLGQVDSTVIVKTHLGGI 374
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGL-----VLPETILIKKSYEEKRLRK-RSKPRSW 420
L+PGD+ GYDL + NN EL+ K + IL++++Y + K +S R W
Sbjct: 375 LHPGDWVSGYDLRTLNNIG-ELENIKEFQQWLNANHDVILVRRTYAKDLESKYQSISRPW 433
Query: 421 KLKSLDMEVDDSK--GRTDQEKMNKEYEEFLRDLEENPELRFNISLY 465
L+ L E+D++ + Q+ MN + E F R++E + E+R I+LY
Sbjct: 434 VLQRLPREIDENNLDKKYYQDNMNNDIENFKREIETDIEMRKEINLY 480
>gi|296085135|emb|CBI28630.3| unnamed protein product [Vitis vinifera]
Length = 404
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 187/295 (63%), Positives = 203/295 (68%), Gaps = 82/295 (27%)
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
QMDQGIDFFF NRSH VKFVEF+GKV P RSRHDKQLVSHD KSNN+NYKYTFSVEI PI
Sbjct: 143 QMDQGIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNYKYTFSVEICPI 202
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
CREDLICLPPKVAVSLGNLGPLVIC KV+N+IALLDPFTLRH
Sbjct: 203 CREDLICLPPKVAVSLGNLGPLVICTKVSNNIALLDPFTLRH------------------ 244
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
+DAQVARVSDFGKNDTIF+IRTHLGHLLNPGD
Sbjct: 245 ----------------------------SDAQVARVSDFGKNDTIFNIRTHLGHLLNPGD 276
Query: 372 YALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDD 431
+ALGYD+Y+AN+NDMEL+KY+ VDD
Sbjct: 277 HALGYDVYAANSNDMELEKYR------------------------------------VDD 300
Query: 432 SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPS 486
SKGR DQEKMN EYE FLRDLEE+PELRFNISLYRNK+YQPSEMAS+TDGED+PS
Sbjct: 301 SKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASMTDGEDLPS 355
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 89/141 (63%), Gaps = 42/141 (29%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA++AGMF V QTVGSVLCCKCGIPM PNAANMCV CLRSE+DITEGLQKH
Sbjct: 61 MAEEAGMFMVHQTVGSVLCCKCGIPMTPNAANMCVKCLRSEIDITEGLQKH--------- 111
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
NLN+VRL++AEFIWTEPHSKRIKVKL+VQKE
Sbjct: 112 -----------------------------NLNKVRLIHAEFIWTEPHSKRIKVKLRVQKE 142
Query: 121 VLNGAI----LEQSYVVEYVQ 137
++ I +S+ V++V+
Sbjct: 143 QMDQGIDFFFANRSHGVKFVE 163
>gi|339246087|ref|XP_003374677.1| 60S ribosomal export protein Nmd3 [Trichinella spiralis]
gi|316972075|gb|EFV55768.1| 60S ribosomal export protein Nmd3 [Trichinella spiralis]
Length = 593
Score = 360 bits (925), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 200/501 (39%), Positives = 294/501 (58%), Gaps = 46/501 (9%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG + PN AN CVAC+R+ VDITE + + + C C+ YL PP TW+ A LE
Sbjct: 129 ILCCQCGTLINPNPANKCVACIRTTVDITECIPRQCQLYSCKFCNRYLNPPSTWVHADLE 188
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
SKELL C+K++ L +VRLV+A+FIWTEPHSKRIKV L +QKEVL G IL+QS VVEYV
Sbjct: 189 SKELLRICLKKIPVLKQVRLVDAKFIWTEPHSKRIKVMLTIQKEVLGGVILQQSVVVEYV 248
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
+ MCD+C +++A D W A VQ+RQ TH+++ G
Sbjct: 249 IHNQMCDACQKIEAK-DYWRACVQIRQKSTHKKS-------------------------G 282
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFF+ HA K V+F+G V + K+LV+HD SN ++YK T+SVEI P+C++D+
Sbjct: 283 MDFFYSKNQHAWKLVQFIGSVLASQYGTSKELVTHDASSNIYDYKRTYSVEIVPVCKDDI 342
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRH-CFLDADQYWRSSFKSLLTSRQL 315
+CL +A SLGN ++IC + + I L++P T R C + + YWRS F S+
Sbjct: 343 VCLSKNLAQSLGNFSQVLICYRTSKFIHLVEPHTGRGVCEVSPNVYWRSPFYSIAQHADF 402
Query: 316 VEYIVLDVEVVSSE-------VNVGGSKYVLADAQVARVSDFGKNDTI-FSIRTHLGHLL 367
EY VLDVE ++ E KY+ +A V R S+ G+ D + RTHLG++L
Sbjct: 403 FEYTVLDVEWINVEDCLRYANGETANDKYLAVEALVVRSSELGRLDAKQYYCRTHLGYVL 462
Query: 368 NPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
GD LG+D N N+ + + + IL++K ++ +R++ R WKLK L+
Sbjct: 463 KAGDTVLGFDTVGCNVNNDNFNSLNRDDVADVILVRKIFDRT---RRNRRRLWKLKRLEA 519
Query: 428 EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSV 487
E+ + + ++ +Y FL DLEE+ LR +++YR+ Q +A +D+P+V
Sbjct: 520 EL------METDSLDNDYTGFLEDLEEDSVLREKVNIYRDPTKQHIPVAEDEFDDDLPAV 573
Query: 488 PLDELLADLDLKSDDGEGDDS 508
L E+L+DL + +D E DD+
Sbjct: 574 DLQEMLSDLCI--NDQEMDDA 592
>gi|323452298|gb|EGB08172.1| hypothetical protein AURANDRAFT_70174 [Aureococcus anophagefferens]
Length = 530
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 196/492 (39%), Positives = 296/492 (60%), Gaps = 31/492 (6%)
Query: 19 CCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
CC+CG+ + + N + CV CLR+ +DITEG+ + C C Y P T+++A+LE
Sbjct: 28 CCECGVGLDVSVNPTSTCVNCLRARIDITEGICTSTNLFKCRRCLRYCAGPTTYVEAELE 87
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+EL+ C+KR+K L RV++ +A +IWTEPHS R+KV+L VQKEV NGAI++Q + E+V
Sbjct: 88 SRELMALCLKRVKGLKRVKVADAAWIWTEPHSMRLKVELTVQKEVDNGAIMQQPLLCEFV 147
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
++ C C A+ W A+VQ+RQ V H+RTFFYLEQ+ILK A A A++I Q G
Sbjct: 148 VRNQQCGDCQAAFASM-AWTASVQVRQRVDHKRTFFYLEQVILKKHAQAAAVKIEQFRDG 206
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DFFF ++ AV+FV F+ P + + K+LVS D SN FN++YT VE++P C++DL
Sbjct: 207 LDFFFKAKNDAVRFVNFLNDCVPTKVKDTKKLVSADTHSNLFNHQYTSLVELAPACKDDL 266
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+ L + A LG+L +V+ V + L+DP T + L AD YWRS + L+++ QL
Sbjct: 267 VLLDARTAARLGSLPRVVLVRSVNAVVRLVDPRTAQLAELGADAYWRSPPRVLVSAGQLE 326
Query: 317 EYIVLDVEVVSSEVNVGGSKYV---LADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYA 373
++VLD S V GG + V +AD +AR +D G+ND +RTHLG LL GD
Sbjct: 327 AFVVLD----SDRVAPGGVRLVRGYVADVTLAREADLGRNDATLLVRTHLGALLRAGDKV 382
Query: 374 LGYDLYSAN-----NNDMELDKYKGLVLPETILIKKSYE-----EKRLRKRSKPRSWKLK 423
+GYDL + N + D+E L P+ +L++K+ + E +K R+W+L
Sbjct: 383 MGYDLRATNLPGECDADLE-----SLGAPDVVLVRKAPQSMQDDEDGEAAGAKKRAWRLD 437
Query: 424 SLDMEV--DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDG 481
+LD++ DD G+ E ++ E F + LE + ++R ++LY++ PS +
Sbjct: 438 NLDVDETHDDDAGKFAAETRERDLEIFRQQLETDRDMRGRVNLYKD----PSGVLDDAPA 493
Query: 482 EDVPSVPLDELL 493
ED ++ LDELL
Sbjct: 494 EDPDAIKLDELL 505
>gi|66359062|ref|XP_626709.1| NMD3p like protein involved in nonsense mediated decay
[Cryptosporidium parvum Iowa II]
gi|46228252|gb|EAK89151.1| NMD3p like protein involved in nonsense mediated decay
[Cryptosporidium parvum Iowa II]
gi|323509203|dbj|BAJ77494.1| cgd3_1340 [Cryptosporidium parvum]
gi|323509989|dbj|BAJ77887.1| cgd3_1340 [Cryptosporidium parvum]
Length = 588
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/477 (41%), Positives = 284/477 (59%), Gaps = 25/477 (5%)
Query: 19 CCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESK 78
CC CG+ N + MC+ C+RSEVDITEG+ + IIS C +C+ + +PP W+ QLES+
Sbjct: 47 CCVCGVATEINPSRMCINCIRSEVDITEGISRQAIISFCRQCERFQKPP--WVSCQLESR 104
Query: 79 ELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQ 138
ELL C+K++K LN VRLV+A FIWTEPHS+R+KVK +QKEV+NGAI++QS VVE+ Q
Sbjct: 105 ELLALCLKKIKGLNTVRLVDASFIWTEPHSRRLKVKCTIQKEVMNGAIIQQSIVVEFFMQ 164
Query: 139 DHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGID 198
CD C R P W VQ+RQ V H+RTF YLEQLILKH A + I + G+D
Sbjct: 165 AQQCDDCRR-SFTPHTWNTVVQVRQRVEHKRTFLYLEQLILKHGAHEKVSNIVEKPDGLD 223
Query: 199 FFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLIC 258
F F +SHA K V+F+ + ++ +QL+S D SN N K+TFSVE+ PIC++D++
Sbjct: 224 FQFQQKSHAQKLVDFITHYFASKVKNSRQLISQDLSSNTHNNKFTFSVELCPICKDDVVF 283
Query: 259 LPPKVA-VSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR------SSFKSLLT 311
+P + LG + L++C K+TN I+L+DPFT R L ++YW+ SSF LL+
Sbjct: 284 IPKNLCISLLGGISSLLLCKKITNRISLIDPFTGREADLTKEKYWQYSGSNGSSFIPLLS 343
Query: 312 SRQLVEYIVLDVE---------VVSSEVNVG-GSKYVLADAQVARVSDFGKNDTIFSIRT 361
LV++ VL+VE V S+ N G +K +A+ +V R SD G D+ + T
Sbjct: 344 RSSLVDFYVLNVERINTTGKHSAVGSDHNQGKNNKVCIAEVEVCRESDLGIPDSSVIVTT 403
Query: 362 HLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPE----TILIKKSYEEKRLR-KRSK 416
HLG LN GD+ GYD + NN + D + + E IL+KK + + + S
Sbjct: 404 HLGAYLNSGDWVSGYDFRTLNNFGVVEDISEFVQWRERNHDVILVKKVFRKNQNNLDSSI 463
Query: 417 PRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS 473
R W L+ L E + N++ E+F +LEE+ E+R +++LY + Q S
Sbjct: 464 QRPWVLQRLPKEQLAFDNANSKSSFNQDLEQFKAELEEDSEMRRDVNLYWDPRIQES 520
>gi|410971102|ref|XP_003992012.1| PREDICTED: 60S ribosomal export protein NMD3 [Felis catus]
Length = 691
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 187/422 (44%), Positives = 274/422 (64%), Gaps = 19/422 (4%)
Query: 94 VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPD 153
VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q MC C RV+A D
Sbjct: 280 VRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQPQMCGDCHRVEAK-D 338
Query: 154 QWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEF 213
W A VQ+RQ H++TF+YLEQLILK+ +RI ++ G+DF++ ++ HA K VEF
Sbjct: 339 FWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEF 398
Query: 214 VGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPL 273
+ P R + ++L+S D SN +NYK TFSVEI PIC+++++CL P++A SLGN+ +
Sbjct: 399 LQCTVPCRHKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPRLAQSLGNMNQI 458
Query: 274 VICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVV-----SS 328
+C++VT++I L+DP TL+ +D +W + F SL +QL E+IV++ +V S+
Sbjct: 459 CVCIRVTSAIHLIDPNTLQVADIDGSTFWSNPFNSLCHPKQLEEFIVMECSIVRDLKRSA 518
Query: 329 EVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMEL 388
+ K++L + V + S+ + F RTHLGHLLNPGD LG+DL + N ND +
Sbjct: 519 GAGMISKKHMLGEVWVQKTSEMNTDKQYF-CRTHLGHLLNPGDLVLGFDLANCNLNDEHV 577
Query: 389 DKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEF 448
+K +P+ +LIKK+Y+ KR + R+WKLK L E ++ TD E ++Y++F
Sbjct: 578 NKMNSDRVPDVVLIKKNYDRT---KRQRRRNWKLKELARERENMD--TDDE---RQYQDF 629
Query: 449 LRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSD-DGEGDD 507
L DLEE+ +R N+++YR+ P E S TD E P + L E+L DL + D GE +
Sbjct: 630 LEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEGAPRISLAEMLEDLHISQDATGEEGE 686
Query: 508 SM 509
SM
Sbjct: 687 SM 688
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 59/75 (78%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V +S C +C Y QPP TWI+
Sbjct: 118 GVNLCCECGVPISPNPANICVACLRSKVDISQGIPKQVCVSFCKQCQRYFQPPGTWIQCA 177
Query: 75 LESKELLTFCVKRLK 89
LES+ELL C+K++K
Sbjct: 178 LESRELLALCLKKIK 192
>gi|67596277|ref|XP_666068.1| Upf1p-interacting protein; Nmd3p [Cryptosporidium hominis TU502]
gi|54656979|gb|EAL35836.1| Upf1p-interacting protein; Nmd3p [Cryptosporidium hominis]
Length = 588
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 198/477 (41%), Positives = 284/477 (59%), Gaps = 25/477 (5%)
Query: 19 CCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESK 78
CC CG+ N + MC+ C+RSEVDITEG+ + IIS C +C+ + +PP W+ QLES+
Sbjct: 47 CCVCGVATEINPSRMCINCIRSEVDITEGISRQAIISFCRQCERFQKPP--WVSCQLESR 104
Query: 79 ELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQ 138
ELL C+K++K LN VRLV+A FIWTEPHS+R+KVK +QKEV+NGAI++QS VVE+ Q
Sbjct: 105 ELLALCLKKIKGLNTVRLVDASFIWTEPHSRRLKVKCTIQKEVMNGAIIQQSIVVEFFMQ 164
Query: 139 DHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGID 198
CD C R P W VQ+RQ V H+RTF YLEQLILKH A + I + G+D
Sbjct: 165 AQQCDDCRR-SFTPHTWNTVVQVRQRVEHKRTFLYLEQLILKHGAHEKVSNIVEKPDGLD 223
Query: 199 FFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLIC 258
F F +SHA K V+F+ + ++ +QL+S D SN N K+TFSVE+ PIC++D++
Sbjct: 224 FQFQQKSHAQKLVDFITHYFASKVKNSRQLISQDLSSNTHNNKFTFSVELCPICKDDVVF 283
Query: 259 LPPKVA-VSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR------SSFKSLLT 311
+P + LG + L++C K+TN I+L+DPFT R L ++YW+ SSF LL+
Sbjct: 284 IPKNLCISLLGGISSLLLCKKITNRISLIDPFTGREADLTKEKYWQYSGSNGSSFIPLLS 343
Query: 312 SRQLVEYIVLDVE---------VVSSEVNVG-GSKYVLADAQVARVSDFGKNDTIFSIRT 361
LV++ VL+VE + S+ N G +K +A+ +V R SD G D+ + T
Sbjct: 344 RSSLVDFYVLNVERINTTGKHSAIGSDHNQGRNNKVCIAEVEVCRESDLGIPDSSVIVTT 403
Query: 362 HLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPE----TILIKKSYEEKRLR-KRSK 416
HLG LN GD+ GYD + NN + D + + E IL+KK + + + S
Sbjct: 404 HLGAYLNSGDWVSGYDFRTLNNFGVVEDISEFVQWRERNHDVILVKKVFRKNQNNLDSSI 463
Query: 417 PRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPS 473
R W L+ L E + N++ E+F +LEE+ E+R +++LY + Q S
Sbjct: 464 QRPWVLQRLPKEQLAFDNANSKSSFNQDLEQFKAELEEDSEMRRDVNLYWDPRIQES 520
>gi|294874366|ref|XP_002766920.1| Nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
gi|239868295|gb|EEQ99637.1| Nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
Length = 535
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 167/370 (45%), Positives = 239/370 (64%), Gaps = 14/370 (3%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
VLCC CG MAPN +NMCV C++ EVDITEG+ K ++++C EC+ Y +PP W+ + E
Sbjct: 169 VLCCVCGASMAPNQSNMCVNCMKGEVDITEGISKQAVVNYCRECNRYQRPP--WVPCEPE 226
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K++K LN+V+LV+A FIW P SKR+KVKL VQKEV+NGAI++QS +V+++
Sbjct: 227 SRELLGICLKKIKGLNKVKLVDANFIWQAPTSKRMKVKLTVQKEVMNGAIMQQSMIVDFI 286
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
CD C R P W A+VQ+RQ H+RTF+YLEQLILKHDA + + I + G
Sbjct: 287 VAWQQCDDCKRTY-TPHTWNASVQVRQKTDHKRTFYYLEQLILKHDAHEKVVGIKRTPDG 345
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF FG+RSHA KF EFV P R + K L+SHD + +NYKYT +++ P+C++D+
Sbjct: 346 LDFHFGHRSHAQKFSEFVLSQVPSRVKQSKHLISHDSHNTTYNYKYTTLIDMCPVCKDDV 405
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+ LP + LG + P+ + KV++ I L+DP T R L +YW++ F+ LLT R LV
Sbjct: 406 VFLPKALKNKLGGVNPIQVVTKVSSQIRLVDPLTGRVSDLAGIEYWKNPFEPLLTRRHLV 465
Query: 317 EYIVLDVEVVSSEVNV-------GGSKYVLADAQVARVSDFGK----NDTIFSIRTHLGH 365
E+ VL+VE +S G Y + D ++ R + G+ + I ++R+HLG
Sbjct: 466 EFTVLNVEEDTSRARAATTFNRRGQKAYTMVDLELMRTENSGEAAAGDPEIITVRSHLGG 525
Query: 366 LLNPGDYALG 375
+L PGD G
Sbjct: 526 VLQPGDLCAG 535
>gi|443921620|gb|ELU41200.1| RNA binding protein [Rhizoctonia solani AG-1 IA]
Length = 537
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 199/487 (40%), Positives = 276/487 (56%), Gaps = 69/487 (14%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
+ P +V VLC CG+ A AN+ + S VDITEG+ K +++C C+ +L PP
Sbjct: 3 YVAPPSVHRVLCADCGMYTA-GTANINTDAMCS-VDITEGIPKQATVNYCRNCERFLSPP 60
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE--VLNGA 125
TW AQ ES+ELL C+K+LK LN+VRL++A FIWTEPHSKR+KVKL +QKE V
Sbjct: 61 NTWTIAQPESRELLAICLKKLKGLNKVRLIDAGFIWTEPHSKRVKVKLTIQKEVRVFTST 120
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q + VEY+ C C+R+ A + W A VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 121 ILQQIFEVEYIVVYGQCPDCTRLAAK-NTWKAMVQVRQKVNHKRTFLYLEQLILKHSAQK 179
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
I + + G+DFF+ RSHA+K VEF+ V P+RS ++ KS N
Sbjct: 180 DTINVKEAKDGLDFFYTQRSHAIKMVEFLNAVVPIRS-----VLFAASKSRETN------ 228
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
PL +C +V NSI L+DP TLR L + YWR+
Sbjct: 229 -----------------------GYIPLTVCTRVGNSIHLIDPATLRSTDLSSPIYWRTP 265
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDF-------------GK 352
F+SL T LVE+ +LD++ S + N ++VLADAQVA + F G
Sbjct: 266 FESLATVSDLVEFTILDID-PSGKTN---GRWVLADAQVAPNNAFQSHSTGMDVDEQEGS 321
Query: 353 NDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLR 412
TI+ RTHLG +L PGD ALGY L AN N E D +P+ +L+KK+Y + R
Sbjct: 322 TSTIYHTRTHLGGILQPGDTALGYFLSRANFNSDEFDALDSSRVPDVVLVKKTYPNR--R 379
Query: 413 KRSKPRSWKLKSLDMEVDDSKG-----------RTDQEKMNKEYEEFLRDLEENPELRFN 461
K+S+ R+W+L+S+ E ++ + DQ ++ +YE FL+DLEE+PELR
Sbjct: 380 KKSRARNWRLRSIAKEANEDESGEGRGALGRRGGLDQARVEADYEAFLQDLEEDPELRAT 439
Query: 462 ISLYRNK 468
++LY+++
Sbjct: 440 VNLYKSE 446
>gi|334347422|ref|XP_001369441.2| PREDICTED: hypothetical protein LOC100015345 [Monodelphis
domestica]
Length = 1022
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 155/279 (55%), Positives = 216/279 (77%), Gaps = 2/279 (0%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G VLCC+CG+P+ PN ANMCVACLR++VDI+EG+ K V I C +C+ YLQPP TWI+
Sbjct: 13 GCVLCCECGVPIPPNPANMCVACLRTQVDISEGIPKQVSIHFCKQCERYLQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELLT C+K++K +L++VRL+ A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLTLCLKKIKASLSKVRLIEAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
EYV MCD+C RV+A D W A VQ+RQ H++TF+YLEQLILKH A +RI ++
Sbjct: 133 EYVVHSQMCDACHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKHRAHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ + HA K V+F+ P RS+ ++L+SHD SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYAQKQHAQKMVDFLQCTVPSRSKSSQRLISHDVHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLR 292
++++CLPP++A SLGN+ + +C++VT+++ L+DP TL+
Sbjct: 252 DNVVCLPPRLAQSLGNMSQICVCIRVTSAVHLIDPSTLQ 290
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 444 EYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSD-- 501
+Y++FL DLEE+ +R N+++Y+ + S TD E P + L E+L DL + D
Sbjct: 957 QYQDFLEDLEEDEAIRKNVNIYKASTI---PVESDTDDEGAPRISLAEMLEDLHIAEDAT 1013
Query: 502 DGEGDDSM 509
GEG M
Sbjct: 1014 GGEGAAMM 1021
>gi|342181785|emb|CCC91264.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 388
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 178/369 (48%), Positives = 239/369 (64%), Gaps = 8/369 (2%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
TV VLCC CG+ + N +NMC +CLRS VDITE LQK I+ +CPEC YLQPP+ W +
Sbjct: 15 TVPKVLCCMCGLLIDSNPSNMCSSCLRSHVDITESLQKEYIVVYCPECSRYLQPPQYWSR 74
Query: 73 AQLESKELLTFCVKRLKNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
A+LES+ELLT C+KR+K L R +LV+A+F+WTEPHSKR+KVKL +QKEV++ +++Q+
Sbjct: 75 AELESRELLTICLKRVKGLGRNAFKLVDAKFVWTEPHSKRLKVKLVLQKEVMSNIVIQQA 134
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
VVEYV C +C +V QW A VQLRQ V H++TF YLEQLILKH IR+
Sbjct: 135 CVVEYVVVWQQCPTCQKVATGQPQWDACVQLRQKVLHKKTFLYLEQLILKHRLQENFIRV 194
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
G+DFFF ++SHA+ F+EFV + +PV R QLVSHD K+N +TFS+EI+P
Sbjct: 195 EAQPDGLDFFFAHKSHAMNFLEFVNRNSPVTRRDAVQLVSHDSKNNTAVQHHTFSLEIAP 254
Query: 251 ICREDLICLPPK-VAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
+CREDL+ LP + + LG LGPLV+ KV ++I L+DP TLR YW+ F L
Sbjct: 255 LCREDLVILPYQNYYLKLGGLGPLVLVHKVYSNIVLVDPRTLRANEFTGTYYWKKPFLPL 314
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
+ SR++VE+ VL + V +Y L V + G + + +HLG L+ P
Sbjct: 315 MNSREMVEFYVLQ----CTPTGVTNGRYHLGVITVCLSEEVGCGRE-WIVTSHLGGLVQP 369
Query: 370 GDYALGYDL 378
GD +GY L
Sbjct: 370 GDLVMGYLL 378
>gi|297739635|emb|CBI29817.3| unnamed protein product [Vitis vinifera]
Length = 281
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/210 (77%), Positives = 184/210 (87%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
M ++AGMF V T+GSVLCCKCGIPM PNAANMCV CLR+EVDITEGLQKH + HCPEC
Sbjct: 33 MTEEAGMFRVHHTIGSVLCCKCGIPMTPNAANMCVKCLRTEVDITEGLQKHATLVHCPEC 92
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
D Y +PP+TWI+ QLESKELLT C+K LKNLN+VRL++AEFIWTEPHSKRIKVKL+VQKE
Sbjct: 93 DRYFRPPKTWIEPQLESKELLTLCLKTLKNLNQVRLIHAEFIWTEPHSKRIKVKLRVQKE 152
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
VLNGAILEQ+Y+VEYVQQ+HMC+SCSRVQANPDQWVA+VQ+RQHV HRRT FYLEQLIL
Sbjct: 153 VLNGAILEQAYIVEYVQQEHMCESCSRVQANPDQWVASVQVRQHVPHRRTLFYLEQLILM 212
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKF 210
HDAA A +I M+QGIDFFF N SH KF
Sbjct: 213 HDAARCAKKIKPMNQGIDFFFANWSHGKKF 242
>gi|340503733|gb|EGR30265.1| hypothetical protein IMG5_136460 [Ichthyophthirius multifiliis]
Length = 618
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 172/483 (35%), Positives = 295/483 (61%), Gaps = 34/483 (7%)
Query: 9 TVPQTVGSVLCCKCGIPMAPN--AANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66
T + ++LCC CGI P+ +MC+ C+ S+ DIT G+ K II+ C C Y +P
Sbjct: 21 THQRITANILCCICGISFNPSETKTSMCIQCVTSQQDITTGITKQGIINFCRMCHRYNKP 80
Query: 67 PRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAI 126
P W+ + ESKE+L C+K++ +N+++L+++ F++TEPHS+RI+++L VQKEVLN
Sbjct: 81 P--WVYCERESKEMLALCLKKIIGINKLKLIDSAFLYTEPHSRRIRLRLTVQKEVLNNTS 138
Query: 127 LEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAAR 186
++Q+++ E+V+ CD C + + P W A VQLRQ V H++TF++LEQ+ILK++A +
Sbjct: 139 IQQNFIAEFVEHYGQCDDCKK-EFTPHTWGACVQLRQKVEHKKTFYFLEQIILKNNAHDK 197
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
+++ + D G+DFF+ N+ A + V+F+ V P++ KQL+SHD ++N F KY +++
Sbjct: 198 ILKVEEKDDGLDFFYKNKMQANRMVDFLASVIPLKITASKQLISHDDRNNTFVNKYVWAL 257
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQY--WRS 304
EI +C++DL PPK+ LG + PL IC KV+N + +D + L+A++Y + +
Sbjct: 258 EIPKVCKDDLCIFPPKLCKELGGISPLCICTKVSNMLHFVDTHQHKRIDLNAEKYFHYEN 317
Query: 305 SFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYV----------LADAQVARVSDFGKND 354
+ +++V++ E + S + YV LA V R SD+ +
Sbjct: 318 DITCISLKNNQTQFMVINYEKIESNGEKMNNSYVSSIQNVYLDKLAHVTVQRTSDWKE-- 375
Query: 355 TIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKR 414
F+IR+HLG +L G + GYDL + N ++ +LD K P+ +L+KK+++++ R+
Sbjct: 376 --FTIRSHLGEILKEGSFVAGYDLTTINYSE-DLDVLKN--APDVVLVKKTFDKQATRR- 429
Query: 415 SKPRSWKLKSLDME---VDDS-----KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYR 466
PR WKLK + M+ VD+ + ++ N ++EEF+ D+E++P+LR NI+LY+
Sbjct: 430 -GPRIWKLKRMQMDGIMVDEEDENENTKKNKKKVKNDDFEEFMDDIEKDPKLRENINLYK 488
Query: 467 NKD 469
++D
Sbjct: 489 DED 491
>gi|348680589|gb|EGZ20405.1| hypothetical protein PHYSODRAFT_350547 [Phytophthora sojae]
Length = 510
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 175/453 (38%), Positives = 260/453 (57%), Gaps = 24/453 (5%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC---------DCYLQP 66
++ CC CG + NA NMC +C+ +EVD+ EG+ + C C Y
Sbjct: 2 AISCCMCGAQIEANAMNMCASCIATEVDVAEGIDTECELVQCRGCLRFQSRGKGQQYSSA 61
Query: 67 PRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAI 126
W+ ESKEL+ C+K + L++ +L++A FIWTEPHSKR+K++L +Q+EV N A+
Sbjct: 62 GGAWLGCDWESKELMALCLKSIPGLSKAKLIDAGFIWTEPHSKRVKLRLTLQREVANHAV 121
Query: 127 LEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAAR 186
++ + V+ +V C C++ Q + + W A VQ+RQ H+RTF LEQ ILKH+A
Sbjct: 122 VQNTCVITFVIHSIKCPDCTK-QYHNNTWRALVQIRQKAEHKRTFLRLEQEILKHNAHQD 180
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
AI IT + +G+DF+FG +S A +F+ F+ P+RS+ +L+S + ++ N + T+SV
Sbjct: 181 AIGITAVKEGMDFYFGTKSTAERFIHFLSAHVPMRSKSSSKLISENVHNSTANLQLTYSV 240
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
E+SPIC++DL+ LP K A S GN+ + +C + T+ + LLDP + + L D+YW+ F
Sbjct: 241 ELSPICKDDLLVLPRKFAQSCGNISDVTLCARTTSMVHLLDPVSGQKAELATDRYWKLPF 300
Query: 307 KSLLTSRQLVEYIVLDVEVVSSE--VNVG---------GSKYVLADAQVARVSDFGKNDT 355
L TS +VE+IVLDVE V VG SKYV+AD +VAR SDFG NDT
Sbjct: 301 LPLATSSDMVEFIVLDVEPVDPRDLRQVGPAPTSGKGRKSKYVVADVEVARASDFGVNDT 360
Query: 356 IFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRS 415
F +RTHLG +L GD GYDL SA + K LP+ +L++K Y + +
Sbjct: 361 TFQVRTHLGGVLTAGDTVKGYDLSSAIFGSSQTYSLKN-ELPDLVLVRKVYPRESGKHHK 419
Query: 416 KPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEF 448
R KLK+L + + ++ E E F
Sbjct: 420 GDR--KLKTLGASRRGKVSKAETARLQHEMEVF 450
>gi|224005310|ref|XP_002296306.1| nonsense mediated decay protein 3-like protein [Thalassiosira
pseudonana CCMP1335]
gi|209586338|gb|ACI65023.1| nonsense mediated decay protein 3-like protein [Thalassiosira
pseudonana CCMP1335]
Length = 598
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 187/520 (35%), Positives = 291/520 (55%), Gaps = 28/520 (5%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T ++LCC C P+ PN +N C +CL S D+T G+ + C C + WI
Sbjct: 23 TAATILCCICATPIHPNPSNTCPSCLASTADVTRGISTEATLHQCRGCSRWHHDAGKWIG 82
Query: 73 AQLESKELLTFCVKRLKNL---------NRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLN 123
+LES+EL+ C+ + L RVRLV+A ++WTEPHS R+K++L +Q+EV+
Sbjct: 83 CELESRELMGLCLGNVSGLKKRKGEGVEGRVRLVDAAWVWTEPHSMRLKIRLTIQREVVT 142
Query: 124 GAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDA 183
G IL+QS++V ++ ++ C C + W + VQ+RQ V H+RTF YLEQLILKH A
Sbjct: 143 GTILQQSFIVTFIVRNQQCVEC-QAAFRQGSWKSLVQVRQRVGHKRTFLYLEQLILKHGA 201
Query: 184 AARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
+ I G+DF+F ++ A +F+ F+ V P++ + K+L+ D KSN NYKYT
Sbjct: 202 HRGCLSIETFKDGMDFYFPDKGKANRFISFLEDVVPMKVKSSKKLIGTDDKSNVSNYKYT 261
Query: 244 FSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWR 303
VEI +C++DL+ LP K+A S+GN+ LV+ V+N I ++DP T + +++D YWR
Sbjct: 262 NLVEICSLCKDDLLFLPKKLARSIGNINRLVLVKNVSNVINVIDPLTGQTGNIESDAYWR 321
Query: 304 SSFKSLLTS--RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRT 361
F+ ++T+ +L Y++L + V E N+ LA AR SD G ND+ +
Sbjct: 322 DPFRPVITAARTRLTRYVILGKDPVFLERNMSK----LASITAARESDLGANDSQMEEHS 377
Query: 362 HLGHLLNPGDYALGYDLYSANNNDMELDKYK-GLVLPETILIKKSYEEKRLRKR--SKPR 418
HLG+L+ GD +GYDL A D E ++ + LP+ + ++K Y + +K R
Sbjct: 378 HLGYLMKSGDVCMGYDLTEAQLVDDEAEELRTSGKLPDFVFVRKLYGGVATGESDAAKKR 437
Query: 419 SWKLKSLDM----EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRN-----KD 469
+KLK LD+ E K + D E N + E+F+++LE + E+R +++Y++ +D
Sbjct: 438 MFKLKRLDVKDGEEDKPRKKKKDAEMENVDEEDFMQELEADKEMRTRVNIYKSDVVAKRD 497
Query: 470 YQPSEMASVTDGEDVPSVPLDELLADLDLKSDDGEGDDSM 509
S + ED + LDELL +L L S DD M
Sbjct: 498 DGDSGEEDDEEDEDDQKITLDELLDNLVLDSKPDAADDVM 537
>gi|118401245|ref|XP_001032943.1| NMD3 family protein [Tetrahymena thermophila]
gi|89287289|gb|EAR85280.1| NMD3 family protein [Tetrahymena thermophila SB210]
Length = 625
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/495 (35%), Positives = 293/495 (59%), Gaps = 53/495 (10%)
Query: 9 TVPQTVGSVLCCKCGIPM--APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66
T + ++LCC CG+ A NMCV CL ++ DIT G+ K +++ C C Y +P
Sbjct: 23 TFQRVTANILCCMCGVSFNAAQTRTNMCVNCLTNQQDITTGITKQGVVNFCRMCRRYNKP 82
Query: 67 PRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAI 126
P W+ + ESKE+L+ C+K++K L +V+L+++ F++TEPHS+RI+++L +QKEV+N
Sbjct: 83 P--WVYCERESKEMLSLCLKKIKGLEKVKLIDSAFLYTEPHSRRIRIRLTIQKEVMNNTS 140
Query: 127 LEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAAR 186
++Q++VVE+V+ CD C + + P W A VQLRQ V H++TFF+LEQ++LKH+A +
Sbjct: 141 IQQNFVVEFVEHYGQCDDCKK-EFTPHTWGAQVQLRQKVEHKKTFFFLEQVMLKHNAHDK 199
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
+++ + D G+DFF+ N+ A + V+F+ V P + + KQL+ D ++N +NYKY++SV
Sbjct: 200 VLKVEEKDDGLDFFYKNKMQANRLVDFIQSVIPCKIKPSKQLIGLDDRNNIYNYKYSWSV 259
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
EI IC++DL PP++ LG + PLV+C+KV+N + +D T + + A++Y+
Sbjct: 260 EIPKICKDDLCVFPPRLCKELGGISPLVLCVKVSNMLHFVDTHTHKRIDITAERYFHYEN 319
Query: 307 KSLLTS--RQLVEYIVLDVEVVSSE-----------VNVGGSKYV-------LADAQVAR 346
++ S + E++V +E + +E VN + LA + R
Sbjct: 320 DIIVLSLKKNSTEFMVTGIEKIENEFTNPQSLNESSVNTSYMSSISNVYQDKLAHLTLMR 379
Query: 347 VSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSAN-NNDMELDKYKGLVLPETILIKKS 405
SD+ + F + HLG ++ G LGYDL + N + D+E+ K PE I++K+
Sbjct: 380 TSDWKE----FHAKAHLGEIIKEGCMVLGYDLTTLNYSEDLEVLKN----APEIIIVKRI 431
Query: 406 YEEKRLRKRSKPRSWKLKSLDM---------EVDDSKGR----TDQEKMNKEYEEFLRDL 452
Y+ K +K R WKLK L M E + KG+ +DQ+K +++EEF+ D+
Sbjct: 432 YD-----KENKARIWKLKRLQMDGVMVEENTEEANKKGKKKIVSDQDK-EQDFEEFMDDI 485
Query: 453 EENPELRFNISLYRN 467
E +P +R I+LY++
Sbjct: 486 ERDPLMREKINLYKD 500
>gi|301097469|ref|XP_002897829.1| 60S ribosomal export protein nmd3, putative [Phytophthora infestans
T30-4]
gi|262106577|gb|EEY64629.1| 60S ribosomal export protein nmd3, putative [Phytophthora infestans
T30-4]
Length = 499
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 177/462 (38%), Positives = 266/462 (57%), Gaps = 29/462 (6%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT------ 69
++ CC CG + NA NMC +C+ +EVD+ EG+ + C C + +T
Sbjct: 2 AISCCMCGAQIEANAMNMCTSCIATEVDVAEGITTTCELVQCRGCLRFQSRGKTQQYSSI 61
Query: 70 ---WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAI 126
W+ ESK+L+ C+K + LN+ +L++A FIWTEPHSKR+K++L +Q+EV N A+
Sbjct: 62 SGAWMDCDWESKDLMALCLKSIPGLNKAKLIDAGFIWTEPHSKRVKLRLTLQREVANHAV 121
Query: 127 LEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAAR 186
++ + +V C C++ Q + + W A VQ+RQ H+RTF LEQ ILKH+A
Sbjct: 122 IQNTCAFTFVIHSVKCPDCTK-QYHNNTWKALVQIRQKAEHKRTFLRLEQEILKHNAHQD 180
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
AI IT + +G+DF+FG +S A +F+ F+ P+RS+ +L+S + + N + T+SV
Sbjct: 181 AIGITTVKEGMDFYFGTKSTAERFIHFLTAHVPMRSKSSSKLISENVHNATANLQLTYSV 240
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
E+SPIC++DL+ LP K+A S GN+ + +C + T + LLDP + + L D+YW+ F
Sbjct: 241 ELSPICKDDLLVLPRKLAQSCGNISDVTLCARTTAMVHLLDPVSGQKAELPTDRYWKLPF 300
Query: 307 KSLLTSRQLVEYIVLDVEVVS----SEVNVG---------GSKYVLADAQVARVSDFGKN 353
L TS +VE++VLDVE V V+VG SK+V+AD +VAR SDFG N
Sbjct: 301 LPLATSSDMVEFVVLDVEPVDPRELRHVHVGPAATSGRGCKSKFVVADVEVARESDFGVN 360
Query: 354 DTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSY-EEKRLR 412
DT F +RTHLG +L+ GD GYDL +A + K LP+ +L++K Y E R R
Sbjct: 361 DTTFHVRTHLGGVLSAGDTVKGYDLSTAIFGSSQTYTLKE-ELPDVVLVRKVYPRENRHR 419
Query: 413 KRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEE 454
K + KLK+L + + +M E E F + E
Sbjct: 420 KGDR----KLKTLGASRRGKVSKAETARMEHEMEVFTEEFLE 457
>gi|219127952|ref|XP_002184189.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404420|gb|EEC44367.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 530
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 185/516 (35%), Positives = 289/516 (56%), Gaps = 35/516 (6%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
SVLCC CG+P++PNAAN C CL S DIT G+ + C C + + W+ +
Sbjct: 15 ASVLCCLCGVPISPNAANTCATCLASSSDITRGISTEATVHQCRGCQRWHKDAGKWVACE 74
Query: 75 LESKELLTFCVKRLKNLN------RVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
LES+EL+ C+ + L +VRL++A +IWTEPHS R+KV+L VQ+EV +G IL+
Sbjct: 75 LESRELMALCLAHVSGLKASKHGAKVRLIDAGWIWTEPHSMRLKVRLTVQREVESGTILQ 134
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
QS+ V +V ++ C C + + W + VQ+RQ V+H+RTF YLEQLILKH A +
Sbjct: 135 QSFTVVFVVRNQQCIEC-QAEFRQGSWKSLVQVRQRVSHKRTFLYLEQLILKHGAHRGCL 193
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
I G+DF+F ++ A +F+ F+ V P++ + K+L+ D KSN NYKYT VEI
Sbjct: 194 SIETFRDGMDFYFPDKGKAARFISFLENVCPIKVKTSKKLIGTDDKSNISNYKYTSLVEI 253
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
P+C++DL+ LP K+A LG++ LV+ +TN I L+DP T + + ++ YW +
Sbjct: 254 CPLCKDDLLHLPIKMARKLGSISRLVLVKNITNVIHLIDPLTGQMAQMSSEAYWCEPIRP 313
Query: 309 LLTS--RQLVEYIVLDVEVVSSEVNVG------GSKYVLADAQVARVSDFGKNDTIFSIR 360
L+T+ ++ YIVL E V NV + LA +AR D G N+ + +
Sbjct: 314 LITAARSRMTRYIVLGKEPVFLRTNVSKRMTNRKQRTKLACVTLAREDDMGVNNHQYEEQ 373
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYKG-LVLPETILIKKSYEEKRLRKRS--KP 417
+H+G+L+ GD +GYDL E + + L LP ++++K Y + + K
Sbjct: 374 SHMGYLMKAGDVCVGYDLKETQFVSDEAESLRSELKLPNVVILRKLYGAVAAGETNAVKR 433
Query: 418 RSWKLKSLDMEVDDS----KG-RTDQEKMNKEYEEFLRDLEENPELRFNISLYRN---KD 469
R W+L+ LD+ V ++ KG + E + E+FL+++E + ++R N+++Y++ K
Sbjct: 434 RMWRLQRLDVAVAETAATGKGVKNAAEADEMDEEDFLQEVEADKDMRMNMNVYKSDFHKR 493
Query: 470 YQPSEMASVTD---------GEDVPSVPLDELLADL 496
P+ M + D ED + LDELL L
Sbjct: 494 NAPAMMGTEGDVSECEDGEDDEDDQQITLDELLDGL 529
>gi|145552184|ref|XP_001461768.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429604|emb|CAK94395.1| unnamed protein product [Paramecium tetraurelia]
Length = 532
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 182/478 (38%), Positives = 286/478 (59%), Gaps = 42/478 (8%)
Query: 3 QDAGMFTVPQTVGSVLCCKCGIPMAPNAAN--MCVACLRSEVDITEGLQKHVIISHCPEC 60
Q G P+T ++LC C + P+ +C C+ ++ DIT G+ K I+++C C
Sbjct: 7 QQIGNQIKPKT--TILCSICDLAFTPSEQKTLICTNCIINQTDITVGITKEGIVNYCRFC 64
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
YL+PP W + ESKELL+ C+KRL+ LN+V++++A F++TEP SKRIKVKL +QKE
Sbjct: 65 HRYLRPP--WTLCERESKELLSICLKRLRGLNKVKIIDAAFVYTEPSSKRIKVKLTIQKE 122
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
VLN ++Q+++ E+V+ C+ C + + P W AAVQ+RQ V H++TFFYLEQL+LK
Sbjct: 123 VLNNTNMQQTFICEFVEHYQQCEDCKK-EFTPHTWGAAVQVRQRVDHKKTFFYLEQLLLK 181
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
++A + ++I Q+D G+DFF+ +RSHA + VE++ + P+R + KQLVSHD SN FNY
Sbjct: 182 YNANDKVLKIEQVDDGLDFFYKSRSHANRLVEYLSTILPIRVKQSKQLVSHDASSNLFNY 241
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQ 300
KY ++V++ +C++DL+ LP K+ LG +G + +C K+T I P L C
Sbjct: 242 KYVYAVDLPKVCKDDLVILPQKLCKELGGVGRVQLCYKLTTIIY---PLKLFLCM----- 293
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR 360
+ KS+ E+ V+DVE + + N+ S Y+ + R S+ N +++
Sbjct: 294 --KMKLKSITLKTHQHEFTVVDVERIHTR-NLNES-YI--SITIIRESN---NYVPVTVK 344
Query: 361 THLGHLLNPGDYALGYDLYSANNNDME-LDKYKGLVLPETILIKKSYEEKRLRKRSKPRS 419
+HLG +L G A+GYDL +E + Y PE IL+K+ ++ K R
Sbjct: 345 SHLGDILKTGQVAIGYDLTQLTIESLEDISNY-----PECILVKRQIN----KEARKLRI 395
Query: 420 WKLKSLDM-----EVDDSKGRTDQEKMN---KEYEEFLRDLEENPELRFNISLYRNKD 469
+KLK L+ E + R Q+K N +++EEFL D+E++ E+R NI+LYR++D
Sbjct: 396 FKLKRLEAQNVMEEEGGERKRNQQKKQNDQEEQFEEFLDDVEKDKEMRKNINLYRDED 453
>gi|145547836|ref|XP_001459599.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427425|emb|CAK92202.1| unnamed protein product [Paramecium tetraurelia]
Length = 537
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 170/448 (37%), Positives = 281/448 (62%), Gaps = 30/448 (6%)
Query: 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLN 92
+C C+ ++ DIT G+ K I+++C C YL+PP W + ESKELL+ C+KRL+ LN
Sbjct: 30 ICTNCIINQTDITVGITKEGIVNYCRFCHRYLRPP--WTLCERESKELLSICLKRLRGLN 87
Query: 93 RVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANP 152
+V++++A F++TEP SKRIKVKL +QKEVLN ++Q+++ E+V+ C+ C + + P
Sbjct: 88 KVKIIDAAFVYTEPSSKRIKVKLTIQKEVLNNTNMQQTFICEFVEHYQQCEDCKK-EFTP 146
Query: 153 DQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVE 212
W AAVQ+RQ V H++TFFYLEQL+LK++A + ++I Q+D G+DFF+ +RSHA + VE
Sbjct: 147 HTWGAAVQVRQRVDHKKTFFYLEQLLLKYNANDKVLKIEQVDDGLDFFYKSRSHANRLVE 206
Query: 213 FVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGP 272
++ + P+R + KQLVSHD SN FNYKY ++V++ +C++DL+ LP K+ LG +G
Sbjct: 207 YLSTILPIRVKQSKQLVSHDASSNLFNYKYVYAVDLPKVCKDDLVILPQKLCKELGGVGR 266
Query: 273 LVICMKVTNSIALLDPFTLRHCFLDADQY--WRSSFKSLLTSRQLVEYIVLDVEVVSSEV 330
+ +C K+T + L+DP +++ L + + + + + E+ V+DVE + +
Sbjct: 267 VQLCYKLTTIVHLIDPLSMKCSDLSIEAFSLYENEIEVYNLKTHQHEFTVVDVERIHTR- 325
Query: 331 NVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDME-LD 389
N+ S + + R S+ N ++++HLG +L G A+GYDL +E +
Sbjct: 326 NLNESYISIT---IIRESN---NYVPVTVKSHLGDILKTGQVAIGYDLTQLTIESLEDIS 379
Query: 390 KYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD----MEVDDSKGRTDQEK----M 441
Y PE IL+K+ ++ K R +KLK L+ ME + + + +Q+K
Sbjct: 380 NY-----PECILVKRQIN----KEARKQRIFKLKRLEAQNVMEEEGGERKRNQQKKQNDQ 430
Query: 442 NKEYEEFLRDLEENPELRFNISLYRNKD 469
++++EEFL D+E++ E+R NI+LYR++D
Sbjct: 431 DEQFEEFLDDVEKDKEMRKNINLYRDED 458
>gi|50546463|ref|XP_500701.1| YALI0B10021p [Yarrowia lipolytica]
gi|49646567|emb|CAG82946.1| YALI0B10021p [Yarrowia lipolytica CLIB122]
Length = 564
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 195/511 (38%), Positives = 287/511 (56%), Gaps = 49/511 (9%)
Query: 1 MAQDAGMFT--VPQ-TVGSVLCCKCGIPM------------------APNA-ANMCVACL 38
MA G T +P+ T +LCC CG M A N+ A +C C+
Sbjct: 1 MADYDGTITKLIPKHTAPKILCCHCGNAMVMRNDSTSGEAGKINLGVAKNSGAALCDDCI 60
Query: 39 RSEVDITEGLQKHV---IISHCPECDCYLQPP-RTWIKAQLESKELLTFCVKRLKNL--N 92
+++DITE + K I++ C C PP R WI A ES+E L C+K++K L +
Sbjct: 61 MAQIDITENIPKSAAENILTICKNCAKVSCPPGRAWIIAPQESRERLALCLKKIKGLTSS 120
Query: 93 RVRLVNAEFIWTEPHSKRIKVKLKVQKEV--LNGAILEQSYVVEYVQQDHMCDSCSRVQA 150
VRLV+A+F+WTEPHS+R KVK+ V+ E ++Q VVE+ + C C++
Sbjct: 121 EVRLVDAQFLWTEPHSRRNKVKVTVRGESPQFPNITVQQDCVVEFTEGSGQCPDCAK-SF 179
Query: 151 NPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKF 210
++W A VQ+RQ V H++TFFYLEQLILK I I + +G++F F ++ A +F
Sbjct: 180 TANKWTAQVQVRQKVDHKKTFFYLEQLILKSRMDDECISIEEAREGLNFLFASKHAAARF 239
Query: 211 VEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNL 270
EFVG V P R + ++LVS D + + +K+TFS++I PICREDLI L K A +G
Sbjct: 240 SEFVGSVVPCRIKQSEELVSTDTHTGHSTFKFTFSIDIVPICREDLIVLSKKQATQIGLY 299
Query: 271 GP-LVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS----RQLVEYIVLDVEV 325
+V+C K+ ++I L+DP +LR + Q++R F ++TS + L +++VLD E+
Sbjct: 300 KSRVVLCYKIGSTIHLIDPNSLRTADVTQQQFFRDPFTPVVTSTSGGKSLTKFMVLDCEI 359
Query: 326 V-SSEVNVGGS------KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDL 378
+ V+V S K+ LA+ +AR SD G ND + IRTH+G +L PGD ALGY +
Sbjct: 360 ILDPSVDVTESFSHVSAKHKLAEVTLARESDLGVNDQQYVIRTHIGAILQPGDTALGYFM 419
Query: 379 YSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV----DDSKG 434
+ N N E + P+ +L+KK Y EK+ K+S R+WKL+ + E D+ K
Sbjct: 420 GNTNVNHDEWESIPEEQRPDVVLVKKYYGEKKKSKKS--RNWKLRRMATEYNEADDNQKN 477
Query: 435 RTDQEKMNKEYEEFLRDLEENPELRFNISLY 465
EYEEFL +LE++PELR I +Y
Sbjct: 478 AHPSAPGGAEYEEFLNELEQDPELRGQIDMY 508
>gi|167395081|ref|XP_001741218.1| nonsense-mediated mRNA decay protein [Entamoeba dispar SAW760]
gi|165894302|gb|EDR22337.1| nonsense-mediated mRNA decay protein, putative [Entamoeba dispar
SAW760]
Length = 411
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 245/402 (60%), Gaps = 11/402 (2%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
+P+ +LCC CG + N ++MC CL +DITEG+ K + I C C +L T
Sbjct: 15 LPERKAEMLCCVCGALIEVNPSSMCANCLHKTIDITEGIPKQITIDQCKRCKKFL-AGTT 73
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W + ES+EL+T+ +KR+K LN+++L+NA +IWTE HSKR+K+KL ++KEV +++Q
Sbjct: 74 WFYCEPESRELMTYLIKRIKGLNKLKLINASYIWTEEHSKRLKIKLTIEKEVFKNTVIQQ 133
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
+ VE++ + CD+C + +A + W + VQLRQH H+++ LEQ ILK +A +A
Sbjct: 134 DFNVEFIIVNGFCDNCHKAEAK-NTWQSVVQLRQHAEHKKSILTLEQEILKANAHQKATD 192
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I +M G+D FF + HA KF++F+ + P+R + K+LVS D N +++K +FSVE+
Sbjct: 193 IQEMPDGMDIFFQSVDHAKKFIDFLQTLVPLRYQQTKKLVSQDDHKNTYDFKVSFSVEVV 252
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PI R+DL+ LP LG +GPL++C +V ++ L+D L A Q+++ F +L
Sbjct: 253 PISRQDLVFLPKVNVNQLGGVGPLMVCTQVAGTLHLVDVLKGTEVELYAHQFFQHPFDAL 312
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
S+ LVEY V++V + V +Y LAD Q+ + DFG + ++T G+ +
Sbjct: 313 TNSKNLVEYYVVEVTKIGKPV----GQYQLADCQIIKSEDFGVTEDYLYVKTVFGNTIRE 368
Query: 370 GDYALGYDL--YSANNNDMELDKYKGL---VLPETILIKKSY 406
G+ ALGYDL +ANN++ E + +GL LPE ILI + +
Sbjct: 369 GETALGYDLVNLNANNDNFESYQQRGLEEGTLPEVILIGRGH 410
>gi|67462854|ref|XP_648084.1| Nonsense-mediated mRNA decay protein 3 [Entamoeba histolytica
HM-1:IMSS]
gi|67479319|ref|XP_655041.1| nonsense-mediated mRNA decay protein [Entamoeba histolytica
HM-1:IMSS]
gi|56464024|gb|EAL42698.1| Nonsense-mediated mRNA decay protein 3, putative [Entamoeba
histolytica HM-1:IMSS]
gi|56472145|gb|EAL49654.1| nonsense-mediated mRNA decay protein, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 411
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 156/402 (38%), Positives = 244/402 (60%), Gaps = 11/402 (2%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
+P+ +LCC CG + N ++MC CL +DITEG+ K + I C C +L T
Sbjct: 15 LPERKAEMLCCVCGALIEVNPSSMCANCLHKTIDITEGIPKQITIDQCKRCKKFL-AGTT 73
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W + ES+EL+T+ +KR+K LN+++L+NA +IWTE HSKR+K+KL V+KEV +++Q
Sbjct: 74 WFYCEPESRELMTYLIKRVKGLNKLKLINASYIWTEEHSKRLKIKLTVEKEVFKNTVIQQ 133
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
+ VE++ + CD+C + +A + W + VQLRQH H+++ LEQ ILK +A A
Sbjct: 134 DFNVEFIIVNGFCDNCHKAEAK-NTWQSVVQLRQHAEHKKSILTLEQEILKANAHQNATD 192
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I +M G+D FF + HA KF++F+ + P+R + K+LVS D N +++K +FSVE+
Sbjct: 193 IQEMPDGMDIFFQSVDHAKKFIDFLQTLVPLRYQQTKKLVSQDDHKNTYDFKVSFSVEVV 252
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PI R+DL+ LP LG +GPL++C +V ++ L+D L A Q+++ F +L
Sbjct: 253 PISRQDLVFLPKVNVNQLGGVGPLMVCTQVAGTLHLVDVLKGTEVELYAHQFFQHPFDAL 312
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
S+ LVEY V++V + V +Y LAD Q+ + DFG + ++T G+ +
Sbjct: 313 TNSKNLVEYYVVEVTKIGKPV----GQYQLADCQIIKSEDFGVTEDYLYVKTIFGNTIRE 368
Query: 370 GDYALGYDL--YSANNNDMELDKYKGL---VLPETILIKKSY 406
G+ ALGYDL +ANN++ E + +GL LPE ILI + +
Sbjct: 369 GETALGYDLVNLNANNDNFESYQQRGLEEGTLPEVILIGRGH 410
>gi|167383479|ref|XP_001736553.1| nonsense-mediated mRNA decay protein [Entamoeba dispar SAW760]
gi|165901019|gb|EDR27203.1| nonsense-mediated mRNA decay protein, putative [Entamoeba dispar
SAW760]
Length = 411
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 244/402 (60%), Gaps = 11/402 (2%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
+P+ +LCC CG + N ++MC CL +DITEG+ K + I C C +L T
Sbjct: 15 LPERKAEMLCCVCGALIEVNPSSMCANCLHKTIDITEGIPKQITIDQCKRCKKFL-AGTT 73
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W + ES+EL+T+ +KR+K LN+++L+NA +IWTE HSKR+K+KL ++KEV +++Q
Sbjct: 74 WFYCEPESRELMTYLIKRIKGLNKLKLINASYIWTEEHSKRLKIKLTIEKEVFKNTVIQQ 133
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
+ VE++ + CD+C + +A + W + VQLRQH H+++ LEQ ILK +A A
Sbjct: 134 DFNVEFIIVNGFCDNCHKAEAK-NTWQSVVQLRQHAEHKKSILTLEQEILKANAHQNATD 192
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I +M G+D FF + HA KF++F+ + P+R + K+LVS D N +++K +FSVE+
Sbjct: 193 IQEMPDGMDIFFQSVDHAKKFIDFLQTLVPLRYQQTKKLVSQDDHKNTYDFKVSFSVEVV 252
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
PI R+DL+ LP LG +GPL++C +V ++ L+D L A Q+++ F +L
Sbjct: 253 PISRQDLVFLPKVNVNQLGGVGPLMVCTQVAGTLHLVDVLKGTEVELYAHQFFQHPFDAL 312
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
S+ LVEY V++V + V +Y LAD Q+ + DFG + ++T G+ +
Sbjct: 313 TNSKNLVEYYVVEVTKIGKPV----GQYQLADCQIIKSEDFGVTEDYLYVKTVFGNTIRE 368
Query: 370 GDYALGYDL--YSANNNDMELDKYKGL---VLPETILIKKSY 406
G+ ALGYDL +ANN++ E + +GL LPE ILI + +
Sbjct: 369 GETALGYDLVNLNANNDNFESYQQRGLEEGTLPEVILIGRGH 410
>gi|218189764|gb|EEC72191.1| hypothetical protein OsI_05267 [Oryza sativa Indica Group]
Length = 522
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 179/429 (41%), Positives = 257/429 (59%), Gaps = 51/429 (11%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
+CC CG+PMAPNAAN C C+RS VDI G+ +H + HCP C YL PPR W++A ES
Sbjct: 31 ICCTCGVPMAPNAANTCALCIRSRVDIAAGVPRHADVVHCPSCSSYLHPPRLWLRAAPES 90
Query: 78 KELLTFCVKRL-KNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA----ILEQS 130
EL++ ++R+ +++ R V L AEF++TEPHS+R+ ++L+++ EVL+G+ LEQ
Sbjct: 91 PELMSLLLRRVDRHIARLGVALAAAEFVFTEPHSRRLMLRLRLRGEVLHGSGGGVTLEQG 150
Query: 131 YVVEYVQQDHMCDSCSRVQAN----PDQ--WVAAVQLRQHVTHRRTFFYLEQLILKHDAA 184
+VVE+ D +CD+C+ +A PDQ W A VQ+RQ +HRRT +LEQ ++ H AA
Sbjct: 151 HVVEFAVHDRLCDACAMARARAAEPPDQCGWSAVVQVRQRASHRRTLLHLEQQVVAHGAA 210
Query: 185 ARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSH------------- 231
A+R+ G G+ S + + P S +
Sbjct: 211 GDALRV-----GAAAVAGSTSSSRR-----APTPPASSTSSPRCRPPASSRPSSSSRTTR 260
Query: 232 -DPKSNN-----FNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIAL 285
P + ++TF+VE+ P+CR+DL+ LP + + LG LGP+V+C+KVTN++AL
Sbjct: 261 VGPALGGSGRPALDTRHTFAVELCPVCRDDLVFLPKEASRDLGGLGPIVLCVKVTNALAL 320
Query: 286 LDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVA 345
LD TLR L +Y R + LTSRQLVEY+VLDV+ E G +A AQVA
Sbjct: 321 LDTSTLRVVHLGIKEYDRCRLEPALTSRQLVEYVVLDVD-HEPEPAAG-----VAYAQVA 374
Query: 346 RVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKS 405
R SD GKNDTIF++RTHLGH+LN G ALG DLY AN N+ +++ + LP+ +L+KK
Sbjct: 375 RASDLGKNDTIFTVRTHLGHVLNAGHRALGDDLYGANVNNHDVESHG---LPDAVLVKKI 431
Query: 406 YEEKRLRKR 414
E+ R++
Sbjct: 432 NEKGSTRRQ 440
>gi|358254206|dbj|GAA54227.1| nonsense-mediated mRNA decay protein 3 [Clonorchis sinensis]
Length = 491
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/411 (39%), Positives = 237/411 (57%), Gaps = 30/411 (7%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCCKCG+ + PN AN C+ CL +E+DIT+ +Q+ I CP+C+ YL PP W+ A E
Sbjct: 9 ILCCKCGVSIEPNEANTCITCLSTEIDITKHIQRQNTIVFCPKCERYLNPPSQWVTAAPE 68
Query: 77 SKELLTFCVKRLKNLNR-VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
S ELL+ C+KR+K LN+ +++ A+FIWTEPHSKRI V++ V E+ G ++EQ +E+
Sbjct: 69 SAELLSMCIKRVKGLNKGLKVRGAKFIWTEPHSKRINVEVTVHGELPTGDMVEQDIPLEF 128
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
V C C+R A D W A VQ+RQ V H+RT +LEQ+IL+ A I Q+
Sbjct: 129 VVHSQQCSDCTRSAAK-DYWNACVQVRQRVDHKRTLMHLEQIILRSKAHGDCSAIKQVSD 187
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
GIDF+FG RS AV FV F+ K AP R + + L SHD +N +NYK+TFSVE++ IC+ D
Sbjct: 188 GIDFYFGTRSQAVSFVNFLCKHAPCRYQTSQHLKSHDVHNNTYNYKFTFSVEVAGICKND 247
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQL 315
++CL + G LGPL + KV+ +I L+DP T + LD ++ S F ++ +QL
Sbjct: 248 IVCLSKAQSQRFGGLGPLCVVYKVSEAIHLIDPVTCQIYHLDGASFFASPFTAIAHQKQL 307
Query: 316 VEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGK----------------------- 352
V ++V+++E E G SK + + AR+S +
Sbjct: 308 VPFVVVEIE----EEPHGASKRLPSAPVGARLSKRHQPISVWLMRLNQQMTVSGADADSH 363
Query: 353 NDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKY-KGLVLPETILI 402
D + R HLG +L+ GD G D+ + N N E K + +P+ IL+
Sbjct: 364 EDGMIHARCHLGRILHVGDTVFGLDIRNCNVNHPEFQKLEENNQVPDVILV 414
>gi|57900085|dbj|BAD88147.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 514
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 179/429 (41%), Positives = 257/429 (59%), Gaps = 51/429 (11%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
+CC CG+PMAPNAAN C C+RS VDI G+ +H + HCP C YL PPR W++A ES
Sbjct: 31 ICCTCGVPMAPNAANTCALCIRSRVDIAAGVPRHADVVHCPSCSSYLHPPRLWLRAAPES 90
Query: 78 KELLTFCVKRL-KNLNR--VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA----ILEQS 130
EL++ ++R+ +++ R V L AEF++TEPHS+R+ ++L+++ EVL+G+ LEQ
Sbjct: 91 PELMSLLLRRVDRHIARLGVALAAAEFVFTEPHSRRLMLRLRLRGEVLHGSGGGVTLEQG 150
Query: 131 YVVEYVQQDHMCDSCSRVQAN----PDQ--WVAAVQLRQHVTHRRTFFYLEQLILKHDAA 184
+VVE+ D +CD+C+ +A PDQ W A VQ+RQ +HRRT +LEQ ++ H AA
Sbjct: 151 HVVEFAVHDRLCDACAMARARAAEPPDQCGWSAVVQVRQRASHRRTLLHLEQQVVAHGAA 210
Query: 185 ARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSH------------- 231
A+R+ G G+ S + + P S +
Sbjct: 211 GDALRV-----GAAAVAGSTSSSRR-----APTPPASSTSSPRCRPPASSRPSSSSRTTR 260
Query: 232 -DPKSNN-----FNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIAL 285
P + ++TF+VE+ P+CR+DL+ LP + + LG LGP+V+C+KVTN++AL
Sbjct: 261 VGPALGGSGRPALDTRHTFAVELCPVCRDDLVFLPKEASRDLGGLGPIVLCVKVTNALAL 320
Query: 286 LDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVA 345
LD TLR L +Y R + LTSRQLVEY+VLDV+ E G +A AQVA
Sbjct: 321 LDTSTLRVVHLGIKEYDRCRLEPALTSRQLVEYVVLDVD-HEPEPAAG-----VAYAQVA 374
Query: 346 RVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKS 405
R SD GKNDTIF++RTHLGH+LN G ALG DLY AN N+ +++ + LP+ +L+KK
Sbjct: 375 RASDLGKNDTIFTVRTHLGHVLNAGHRALGDDLYGANVNNHDVESHG---LPDAVLVKKI 431
Query: 406 YEEKRLRKR 414
E+ R++
Sbjct: 432 NEKGSTRRQ 440
>gi|193785612|dbj|BAG51047.1| unnamed protein product [Homo sapiens]
Length = 383
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 243/394 (61%), Gaps = 19/394 (4%)
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+
Sbjct: 1 MNGAILQQVFVVDYVVQSQMCGDCHRVEA-KDFWKAVIQVRQKTLHKKTFYYLEQLILKY 59
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
+RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK
Sbjct: 60 GMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYK 119
Query: 242 YTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQY 301
TFSVEI PIC+++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +
Sbjct: 120 STFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTF 179
Query: 302 WRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTI 356
W F SL +QL E+IV++ +V G+ K+ L + V + S+
Sbjct: 180 WSHPFNSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTGKQY 239
Query: 357 FSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSK 416
F RTHLGHLLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR +
Sbjct: 240 FC-RTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQR 295
Query: 417 PRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMA 476
R+WKLK L E ++ TD E ++Y++FL DLEE+ +R N+++YR+ P E
Sbjct: 296 RRNWKLKELARERENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE-- 347
Query: 477 SVTDGEDVPSVPLDELLADLDLKSD-DGEGDDSM 509
S TD E P + L E+L DL + D GE SM
Sbjct: 348 SDTDDEGAPRISLAEMLEDLHISQDATGEEGASM 381
>gi|256085250|ref|XP_002578835.1| nonsense-mediated mRNA decay protein [Schistosoma mansoni]
gi|353228761|emb|CCD74932.1| putative nonsense-mediated mRNA decay protein [Schistosoma mansoni]
Length = 396
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 154/398 (38%), Positives = 226/398 (56%), Gaps = 39/398 (9%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
Q + +LCCKCG+ M N ANMC CL SE DI E + + ++ CP+C+ YL PP W+
Sbjct: 4 QGLSLILCCKCGVQMYSNTANMCFTCLSSEADIAEHIDRQNTVTFCPKCERYLNPPSNWV 63
Query: 72 KAQLESKELLTFCVKRLKNLNR-VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
A+ ES ELL+ C+K+++ L + + + NA FIWTEPHS+RI +++ VQ + G +EQ
Sbjct: 64 SAEPESPELLSLCIKKIRGLKKGLEVRNARFIWTEPHSRRISIEITVQGTLQTGDRVEQQ 123
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+++ C SC+R A D W A VQ+RQ V H++T +LEQ+IL+ A I
Sbjct: 124 IPIDFTVHTQQCTSCTR-NAAKDFWNACVQVRQKVDHKKTLLHLEQVILRSGAHKACSNI 182
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
Q+ GIDFFF RS AV FV F+ K +P R + + L SHD +N +NYKYTFSVEI+P
Sbjct: 183 KQVSGGIDFFFSTRSQAVTFVNFLSKRSPCRYQTAQHLKSHDVNNNTYNYKYTFSVEIAP 242
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
+C+ D++CL + LG + L + KVT++I L+DP T + C++D+ Y+ S F S+
Sbjct: 243 VCKNDIVCLSRAQSQKLGGISQLCVVSKVTDAIHLIDPLTCQVCYVDSKAYFSSPFMSIT 302
Query: 311 TSRQLVEYIVLDVE-----------------VVSSEVNVGG---------SKYVLAD--- 341
T + ++VL++E S+ VG S +V+ D
Sbjct: 303 TQKHFSPFVVLEIEEQRDDSSQMNSSRKSYTTSSTSYPVGAKLSQKHSPVSVWVMKDPSN 362
Query: 342 ----AQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALG 375
Q+ SD G + R+HLG +L+PGD LG
Sbjct: 363 ETGLVQLNNESDSG----VIHTRSHLGRILHPGDKVLG 396
>gi|440300468|gb|ELP92937.1| nonsense-mediated mRNA decay protein, putative [Entamoeba invadens
IP1]
Length = 424
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 156/395 (39%), Positives = 233/395 (58%), Gaps = 12/395 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
+LCC CG + N + MC C+++ VDITEG+ K V IS C C +L TW +
Sbjct: 35 AEMLCCVCGALIEVNPSCMCANCIQTAVDITEGIPKQVTISQCKGCKKFL-AGTTWFYCE 93
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
ESKEL+T+ VKR+K +N+++L+NA +IWTE HSKR+K+KL V+KEV +++Q + VE
Sbjct: 94 PESKELMTYLVKRVKGVNKLKLLNASYIWTEEHSKRLKIKLTVEKEVFKNTLIQQDFTVE 153
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
++ + CD+C +V+A + W + VQLRQH H+++ LE ILK A A + +M
Sbjct: 154 FIVVNAFCDNCHKVEAK-NTWQSVVQLRQHSEHKKSIATLETAILKAKAHQNATDVKEMP 212
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+D FF + HA KFVEF+ + P+R + K+LVS D N +++K +FSVE+ PI R
Sbjct: 213 DGMDVFFSSVDHAKKFVEFLQTLVPLRYQQSKKLVSQDEHKNTYDFKVSFSVEVVPISRL 272
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
DL+ LP V LG +GPL++C +V +I L D L A Q+++ FK+L SR+
Sbjct: 273 DLVFLPKVVVAMLGGVGPLMVCTQVAGTIHLRDVIKGTEVELYAHQFFQHPFKTLCDSRR 332
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYAL 374
Y + VE+ N ++DAQ+ R DFG + ++T G L GD A
Sbjct: 333 FSHYYI--VELTRDFQNRNNP---ISDAQIIRSEDFGVTEDYIYVKTVFGDKLKEGDNAY 387
Query: 375 GYDLYSANNNDMELDKYKG-----LVLPETILIKK 404
GYDL + N ND E + ++ +PE IL+++
Sbjct: 388 GYDLININPNDDEFEDWQAKQIENKTIPEVILVER 422
>gi|325181974|emb|CCA16428.1| 60S ribosomal export protein nmd3 putative [Albugo laibachii Nc14]
Length = 403
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 236/397 (59%), Gaps = 9/397 (2%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC---DCYLQPPRTWIK 72
++ CC CG + PNA NMC C S+VDI E + + C +C C +W+
Sbjct: 2 TIPCCLCGSQIEPNALNMCSICTASKVDIAENIATEHELKQCAQCKRYQCKTGCNTSWVL 61
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
+LES+ELL FC+K + NL + ++++A F+WTEPHSKRIK+ + +QK+ + A + + +
Sbjct: 62 FELESRELLGFCLKLVSNLKKYKIIDANFVWTEPHSKRIKLNIIIQKDFVQHAPVRATKL 121
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
+ +V Q+ C CS+ + W A VQ+RQ RRT LEQ ILK A A+ I
Sbjct: 122 LTFVIQNIKCADCSK-DFHDKSWRAVVQIRQKANPRRTLARLEQEILKSKAHEEAMGIQS 180
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
+ +G+D +F +++ +F++F+ AP R + +++S D ++ + T+SV++SPIC
Sbjct: 181 VKEGMDLYFSSKAPVERFLQFIAAHAPTRIKSSSKMISEDVRNGTAKIQATWSVQLSPIC 240
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
++DL+ LP + A SLGN+ LV+C K T++I +LDPFT + + D+YW+ F+SL TS
Sbjct: 241 KDDLLLLPARTAQSLGNISRLVLCTKTTSAIDVLDPFTGQKAEISGDKYWKLPFQSLDTS 300
Query: 313 RQLVEYIVLDVEVVSSEVNVGG-----SKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
+ EYIVLD E + + GG +VLAD +VAR +DFG ND ++THLG +L
Sbjct: 301 PHMEEYIVLDNEPLIPKHKSGGLSETDRDFVLADVEVARTNDFGVNDITHHVQTHLGAIL 360
Query: 368 NPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKK 404
+ G+ GYDL + N K LP+ +L++K
Sbjct: 361 SAGNSVRGYDLQATNFGARYTQGVKEEDLPDIVLVRK 397
>gi|399218108|emb|CCF74995.1| unnamed protein product [Babesia microti strain RI]
Length = 481
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 176/501 (35%), Positives = 271/501 (54%), Gaps = 43/501 (8%)
Query: 15 GSVLCCKCG--IPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
+LCC CG +P P + C CL V+IT + + C C C + WI
Sbjct: 6 APMLCCLCGDLVP-EPTDSRTCQRCLLQNVNITHQIPTQTNLLQC--CTCKMFYHNHWIN 62
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
QLESKELL+ C+++ K L++V++V+A+F+WTEPHSKRIKV+ +++KE+ ++EQ +V
Sbjct: 63 VQLESKELLSICIRKTKGLDKVQIVDAKFLWTEPHSKRIKVQYQLRKEISMKCVVEQQHV 122
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VEY+ + CD C + P W A VQ+R V ++ LEQ I+KH A I+I
Sbjct: 123 VEYMIRSTQCDKCKQ-SYTPHSWDAIVQIRHKVKDKKEILLLEQAIIKHHAQENVIKIVP 181
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
G D FG ++HA KFVEFV + + +H K+L++HD +N++ YKY+ +++++ IC
Sbjct: 182 QLYGFDLHFGCKNHAQKFVEFVCERTVSQVKHSKKLITHDSNNNSYKYKYSTNIDMAEIC 241
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS---- 308
R+DLI LP K G + ++C+ + +I L+DPFTLR + AD+YWR+ F S
Sbjct: 242 RDDLIYLPLKFVSQFGGISSFLLCINLNKTITLIDPFTLRKVDISADKYWRNPFFSSKQT 301
Query: 309 ----LLTSRQLVEYIVLDVEVVSSEVNVGGS---KYVLADAQVARVSDFGKNDTIFSIRT 361
+ T L ++IV ++E + + G KY L D ++ G ++ I++ +
Sbjct: 302 KTNPVYTKIHLSQFIVANIENSKTYMIAGAKYADKYQLVDLELIPC---GGSEVIYTT-S 357
Query: 362 HLGHLLNPGDYALGYDLYSANN-NDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSW 420
HLG L PGD GYDL N N+ + D + +P ++I K + ++K K R W
Sbjct: 358 HLGRQLRPGDTCAGYDLRHLNTMNEQQSDALEK--VPYDVIIVK----RVVKKHRKARPW 411
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTD 480
LKSL D + + EEF DL++ ELR +I Y+N P +T+
Sbjct: 412 VLKSLTKNTD---------MLFNDLEEFKDDLDDVEELRNDIIFYKN----PKCDVPITE 458
Query: 481 GEDVPSVPLDELLADLDLKSD 501
D L E + DL L +D
Sbjct: 459 SSDFDW--LSEKIQDLSLDND 477
>gi|298712609|emb|CBJ33306.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 575
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 174/517 (33%), Positives = 265/517 (51%), Gaps = 62/517 (11%)
Query: 14 VGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGL-QKHVIISHCPECDCYLQPPRTWIK 72
+ ++LCC CG P+ PN ANMC ACLR +VD+TEG+ +K + I C C +L W
Sbjct: 60 LATILCCLCGRPIQPNGANMCGACLRDQVDVTEGIPKKGLTIIQCRRCLKWLTKNDHWSG 119
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYV 132
+LES L +K++ L + LV+A++IWTEPHSKR+KV++ V+KEVLN +L+Q
Sbjct: 120 FELESAPFLALVLKKIPGLAKQDLVDAKWIWTEPHSKRLKVRITVRKEVLNKVMLQQDAT 179
Query: 133 VEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQ 192
VE+V + C+ C++ N W A VQ+RQ H+RT LEQ IL+ DA + I +
Sbjct: 180 VEFVVHNRQCNVCNKEFTN-QTWKAIVQIRQRAGHKRTMMLLEQRILQADAHRKCISVET 238
Query: 193 MDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPIC 252
+ G+D +FG + AV+FV ++ VAP+RSR +LVS D SN N ++T +V++ +C
Sbjct: 239 VRGGMDVYFGAKHDAVEFVGYLSSVAPIRSRESTKLVSTDNHSNVRNTQHTVAVDVPTLC 298
Query: 253 REDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS 312
R+DL+ LP L G + + +VT+ + + P + + + AD+YWRS + LL++
Sbjct: 299 RDDLVALPRGSGNRL--QGTITVVQRVTSVVQFVGPSSGQTADMPADRYWRSPPEPLLSA 356
Query: 313 RQLVEYIVLDVEV----------------------VSSEVNVGGSKYVLADAQVARVSDF 350
L E++VLD E ++ G L + VA SD
Sbjct: 357 SSLTEFVVLDSEPADGFSAAGGGGGGGGGGKKERHAAASSAAGTKNKSLWEVVVALDSDV 416
Query: 351 GKNDTIFSIRTHLG------HLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKK 404
G D F++ THL H L GD LGYDL N N+ L G V P+ +L+K+
Sbjct: 417 GSADDTFTVLTHLSADSAGLHPLEAGDMLLGYDLRGKNFNEALLSGLSGDV-PDIVLVKR 475
Query: 405 SYEEKRLRKRSKPRSWKLKSLD-----------------------MEVDDSKGRTDQEKM 441
+ K +SK + +KL+SLD + G +D+
Sbjct: 476 APPPK--TAQSKKKRYKLRSLDGTGGGEGGGADHGKGGKRGAGGGSGKASNTGGSDE--- 530
Query: 442 NKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASV 478
+E + +L + ELR + + D PS A+
Sbjct: 531 -REIAALIEELSMDEELRAELGIVPEPDEGPSRAAAA 566
>gi|123472285|ref|XP_001319337.1| NMD3 family protein [Trichomonas vaginalis G3]
gi|121902118|gb|EAY07114.1| NMD3 family protein [Trichomonas vaginalis G3]
Length = 479
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 255/462 (55%), Gaps = 22/462 (4%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
V V V CC CG+P PN NMC+ CL+ +VD T+ + + +C C Y P T
Sbjct: 5 VDDAVVKVPCCICGVPTEPNPFNMCIDCLKQKVDFTDTVPNTSAVVYCKNCGRYQTGPTT 64
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W A+LES ELL+ C+ ++ L +++V+++F++TEPHS+RI+V L +QKE LNG +L Q
Sbjct: 65 WQHAELESPELLSICLSKVNGLKDMKIVDSQFLYTEPHSRRIRVSLTLQKEALNGTVLRQ 124
Query: 130 SYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIR 189
+ +V +V C C + W+A VQLRQ+V H+R+ F LEQLILKH A A
Sbjct: 125 TVIVTFVVNIVQCPKCVEAATPREHWIANVQLRQNVRHKRSLFRLEQLILKHRAHAGTTS 184
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
+ ++D G+DF F +++ A +F+ F+ + +P + + V D ++ + ++++ V++
Sbjct: 185 LERVDDGVDFHFPDKAGANRFINFLLQHSPAKYDETAKQVGEDIQNGTLDMRFSYPVKVP 244
Query: 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSL 309
P+CR+D + LP GN + + +VT I L+DP T +D YW++ F +
Sbjct: 245 PVCRQDFVILPDFFVKKTGNQAHVAVVHRVTKIIRLVDPMTATPIDIDGPTYWKNQFDPV 304
Query: 310 LTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
T + ++ VL++E ++ LAD ++A D + I +RTHLG L+
Sbjct: 305 CTIDSVTKFNVLNIEPFGPR----NGQFQLADVELA---DENYEEQIM-VRTHLGDHLHI 356
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
G+ L YDL + D D K + + I++ +++E K+ R WK+K E+
Sbjct: 357 GEPCLAYDLRTLVLPDKVEDVIKKYDISKVIIVGRTHE-----KKHGIRKWKVK----EL 407
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ 471
K D+ E+E F+ ++E++ ELR ++ +Y+N D +
Sbjct: 408 APHKSSDDE-----EFENFMDEMEDDKELRQDVDIYKNPDAE 444
>gi|256085252|ref|XP_002578836.1| nonsense-mediated mRNA decay protein [Schistosoma mansoni]
gi|353228762|emb|CCD74933.1| putative nonsense-mediated mRNA decay protein [Schistosoma mansoni]
Length = 379
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 147/384 (38%), Positives = 216/384 (56%), Gaps = 39/384 (10%)
Query: 26 MAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCV 85
M N ANMC CL SE DI E + + ++ CP+C+ YL PP W+ A+ ES ELL+ C+
Sbjct: 1 MYSNTANMCFTCLSSEADIAEHIDRQNTVTFCPKCERYLNPPSNWVSAEPESPELLSLCI 60
Query: 86 KRLKNLNR-VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDS 144
K+++ L + + + NA FIWTEPHS+RI +++ VQ + G +EQ +++ C S
Sbjct: 61 KKIRGLKKGLEVRNARFIWTEPHSRRISIEITVQGTLQTGDRVEQQIPIDFTVHTQQCTS 120
Query: 145 CSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNR 204
C+R A D W A VQ+RQ V H++T +LEQ+IL+ A I Q+ GIDFFF R
Sbjct: 121 CTR-NAAKDFWNACVQVRQKVDHKKTLLHLEQVILRSGAHKACSNIKQVSGGIDFFFSTR 179
Query: 205 SHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVA 264
S AV FV F+ K +P R + + L SHD +N +NYKYTFSVEI+P+C+ D++CL +
Sbjct: 180 SQAVTFVNFLSKRSPCRYQTAQHLKSHDVNNNTYNYKYTFSVEIAPVCKNDIVCLSRAQS 239
Query: 265 VSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVE 324
LG + L + KVT++I L+DP T + C++D+ Y+ S F S+ T + ++VL++E
Sbjct: 240 QKLGGISQLCVVSKVTDAIHLIDPLTCQVCYVDSKAYFSSPFMSITTQKHFSPFVVLEIE 299
Query: 325 -----------------VVSSEVNVGG---------SKYVLAD-------AQVARVSDFG 351
S+ VG S +V+ D Q+ SD G
Sbjct: 300 EQRDDSSQMNSSRKSYTTSSTSYPVGAKLSQKHSPVSVWVMKDPSNETGLVQLNNESDSG 359
Query: 352 KNDTIFSIRTHLGHLLNPGDYALG 375
+ R+HLG +L+PGD LG
Sbjct: 360 ----VIHTRSHLGRILHPGDKVLG 379
>gi|340385475|ref|XP_003391235.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Amphimedon queenslandica]
Length = 280
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/254 (53%), Positives = 185/254 (72%), Gaps = 1/254 (0%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG + PN ANMCVACLR++VDITEG+ K + C C+ YLQPP W+ LE
Sbjct: 18 ILCCQCGTMIEPNPANMCVACLRTQVDITEGIPKQSTVYFCRSCERYLQPPSGWVSCSLE 77
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL C+K+LK L +V LV+A FIWTEPHSKR+K+KL +QKEVL G +L+Q +VVE++
Sbjct: 78 SRELLALCLKKLKGLGKVHLVDAGFIWTEPHSKRLKIKLTIQKEVLAGTLLQQVFVVEFI 137
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
MC+ C R +A D W A VQ+RQ TH++TF YLEQLILKH+ + +RI ++ G
Sbjct: 138 VHHQMCEDCQRREAK-DYWKAVVQVRQKTTHKKTFLYLEQLILKHNIHSNVLRIKEIKGG 196
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ + A K VEF+ V P + + ++L+SHD SN +NYK+TFSVEI P+CR+++
Sbjct: 197 LDFYYAQKQDARKMVEFIMSVVPSKYKTSQELISHDVHSNTYNYKFTFSVEIVPVCRDNV 256
Query: 257 ICLPPKVAVSLGNL 270
+CLP KVA SLGN+
Sbjct: 257 VCLPRKVANSLGNI 270
>gi|47224989|emb|CAF97404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 549
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/405 (39%), Positives = 244/405 (60%), Gaps = 40/405 (9%)
Query: 113 VKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFF 172
+ + V +VLNGAIL+Q +VVE+V Q+ MCD C RV+A D W A VQ+RQ +H++TF+
Sbjct: 174 ILMTVSLQVLNGAILQQVFVVEFVVQNQMCDDCHRVEAK-DFWKAVVQVRQKTSHKKTFY 232
Query: 173 YLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHD 232
YLEQLILKH + A+ I ++ GIDF++G + HA K V+F+ P RS+ ++L+SHD
Sbjct: 233 YLEQLILKHKLHSNALNIKEIHDGIDFYYGLKQHAQKMVDFLQCTVPCRSKASQRLISHD 292
Query: 233 PKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLR 292
SN +NYK TFSVEI P+C+++++CL P++A SLGN+G + +C++VT++I L+DP TL+
Sbjct: 293 IHSNTYNYKSTFSVEIVPVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSTIHLIDPATLQ 352
Query: 293 HCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGG-----SKYVLADAQVARV 347
+D + YWR+ F SL RQL E+IV+D++++ + G S++ LA+ V +
Sbjct: 353 IAEVDGNTYWRNPFNSLCNPRQLEEFIVMDIDIIRDQKLGAGAGTRSSRHTLAEVWVQKT 412
Query: 348 SDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYE 407
S+ + + RT LGHLLN GD LG+D ++N ND L+K +P+
Sbjct: 413 SEMDTSQQ-YHCRTFLGHLLNIGDLVLGFDFANSNINDEHLNKMNPHHIPDV-------- 463
Query: 408 EKRLRKRSKPRSWKLKSLDME---VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISL 464
R ++KSL + VD ++Y++FL DLEE+ LR N+++
Sbjct: 464 ----------RGRQVKSLGFKPLYVDPQ----------RQYQDFLEDLEEDEALRKNVNI 503
Query: 465 YRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSDDGEGDDSM 509
+R+ P E S TD + P + L E+L +L L GE M
Sbjct: 504 FRDASKIPVE--SDTDDDGAPQISLAEMLEELSLTDATGEEGADM 546
>gi|224151557|ref|XP_002337118.1| predicted protein [Populus trichocarpa]
gi|222838312|gb|EEE76677.1| predicted protein [Populus trichocarpa]
Length = 165
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 128/165 (77%), Positives = 147/165 (89%), Gaps = 1/165 (0%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
MA++AGMF V QT+GSVLCCKCGIPM PNAANMCV CLRSEVDITEGL+K+VI+ HCPEC
Sbjct: 1 MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCPEC 60
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQK 119
D YL PP T I+AQLES+EL+ FC+K+LK V LVNAEFIWTEPHSKRIK++++VQK
Sbjct: 61 DTYLDPPSTRIRAQLESRELMAFCLKKLKLKSTGVILVNAEFIWTEPHSKRIKLRVRVQK 120
Query: 120 EVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQH 164
EVL+GAILEQ+YV+EYVQQD MCDSC+RVQANPDQWVA VQLRQH
Sbjct: 121 EVLHGAILEQAYVIEYVQQDQMCDSCTRVQANPDQWVAGVQLRQH 165
>gi|221481841|gb|EEE20211.1| NMD3 protein, putative [Toxoplasma gondii GT1]
Length = 799
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 202/318 (63%), Gaps = 4/318 (1%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T +VLCC CG + P+ ++C++CL +VDITEG+ + +++ C C Y+ W+
Sbjct: 25 TYAAVLCCICGCSIPPSPRSICLSCLAQQVDITEGISRSIVLPCCRTCGRYMHIQNKWLA 84
Query: 73 AQLESKELLTFCVKRLKNLNRV-RLVNAEFIWTEPHSKRIKVKLKVQKEVLNG-AILEQS 130
+LES+EL+ C+K+++ L +V ++V+ +++WTEPHS+R+K+KL VQ +VL+G A L+QS
Sbjct: 85 CELESRELMAVCLKKVRGLKKVEKIVDCQWLWTEPHSRRVKMKLTVQSDVLDGRAGLQQS 144
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
++E V Q+ CD C + W A VQ+RQH H+RTF +LEQL+LKH AAR + +
Sbjct: 145 LIIEGVIQNTQCDECKKSYTPHAGWTAMVQVRQHAEHKRTFLFLEQLVLKHRLAARLLNV 204
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
+ G+DF F +R A+ F +F P SR KQL+SHD SN + +KYT SV ++P
Sbjct: 205 VEKSDGLDFHFPSRQAALHFADFCQSRFPSVSRQAKQLISHDASSNIYYHKYTISVTLAP 264
Query: 251 ICREDLICLPPKVA-VSLGNLGPLVICMKVTNS-IALLDPFTLRHCFLDADQYWRSSFKS 308
+C++DL+ + K A LG L +C +V + I L DPF+ + + ++YW+S F+
Sbjct: 265 VCKDDLVYIHRKQAQAQLGGFTNLSLCTRVAGAGIQLTDPFSGKVLNVSPEKYWKSPFQP 324
Query: 309 LLTSRQLVEYIVLDVEVV 326
L T + L ++VLDV V
Sbjct: 325 LCTRKHLSSFLVLDVNPV 342
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 335 SKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSAN-----NNDMELD 389
S ++ + ++AR SD G +D THLG L+ GD+ GYDL S N +N++E D
Sbjct: 456 STPLVYEVELARASDVGVSDRRVVTYTHLGRFLSAGDWVKGYDLRSINLPGAADNELERD 515
>gi|84998458|ref|XP_953950.1| nonsense-mediated mRNA decay protein (NMD3 ) [Theileria annulata]
gi|65304948|emb|CAI73273.1| nonsense-mediated mRNA decay protein (NMD3 homologue), putative
[Theileria annulata]
Length = 512
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/499 (32%), Positives = 262/499 (52%), Gaps = 36/499 (7%)
Query: 7 MFTVPQTVGSVL----CCKCG-IPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECD 61
+FT P + S+ C CG AP ++ MC CL VD++E + H I C C
Sbjct: 5 LFTSPTKLDSIYPPMQCFLCGEFVSAPTSSRMCSTCLTKSVDLSENVSTHCTILQCTTCT 64
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
+ W+ +LESKELL+ C+K++K ++ +++V+A F WTEPHSK++KV + VQKEV
Sbjct: 65 RFYHD--RWLNCELESKELLSICLKKIKGIDLMKIVDAHFKWTEPHSKKLKVNVTVQKEV 122
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
N ++EQS +++ C SC ++ P W A VQ+RQ ++ LEQ+ILKH
Sbjct: 123 ENNCVVEQSLSIDFTIASAQCASCKQMYT-PHTWKALVQIRQKTKDKKHILLLEQIILKH 181
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
+A + I G D F +R+ A KF +FV + ++ K+LV+ D +N +NYK
Sbjct: 182 NAHENVLNILSRRNGFDLHFSSRNDAQKFADFVSDKIVSQIKNSKKLVTQDVNNNKYNYK 241
Query: 242 YTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQY 301
YT V + PIC +DL+ L PKV+ G + P ++C+ +T++I+L+DPFTLR + +D+Y
Sbjct: 242 YTLHVSLVPICTDDLVFLSPKVSSIYGGISPFLLCINLTSTISLMDPFTLRKLEVSSDKY 301
Query: 302 WRSSFKS----------LLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFG 351
WR+ F S + L E+IVL++E + + +Y L D ++
Sbjct: 302 WRNPFVSCKKWRFNLFLVFNKFNLCEFIVLNIEKDYTRKS-KDQQYELVDVEIMP----S 356
Query: 352 KNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDM---ELDKYKGLVLPETILIKKSYEE 408
+ I ++HLG +L G LGYD+ N N + E D + + IL++K+
Sbjct: 357 NSSKIIYTKSHLGKILTVGGTYLGYDIKRINMNGLSEQETDISNRIPF-DVILVRKA--- 412
Query: 409 KRLRKRSKPRSWKLKSLDMEVDDSKGR---TDQEKMNKEYEEFLRDLEENPELRFNISLY 465
+K S +W LK + ++ K + +++ E +F ++ E + +I Y
Sbjct: 413 ---KKYSSKHNWVLKRMFRRKNNQKDKDNDMEEDIDEDELLDFKEEIVNRKEFQKDIDFY 469
Query: 466 RNKDYQPSEMASVTDGEDV 484
RN +P + +T D+
Sbjct: 470 RNPRAKPHKEFDITPSSDM 488
>gi|253744702|gb|EET00862.1| Nonsense-mediated mRNA decay protein 3 [Giardia intestinalis ATCC
50581]
Length = 488
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 212/378 (56%), Gaps = 12/378 (3%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
QT G +LCC CG+P+ PN +MC+ CLR++V+IT+G+ + HC +C+ Y ++
Sbjct: 5 QTYG-ILCCSCGVPIEPNPTSMCLPCLRAQVNITDGIDTEQTLIHCHQCNRYNVGNDKYV 63
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A+LES +LL C+K+++ L VR+V+A FIWTE HSKRIKV+L +Q EV GA+L+Q +
Sbjct: 64 AAELESPQLLGICLKKIRGLQHVRVVDAGFIWTEEHSKRIKVRLLIQAEVQQGAVLQQEH 123
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
V + +C C W VQ+RQ V H+RTF YLEQ+IL + A I
Sbjct: 124 VCTFTVMSTLCVPCQYTHTE-HTWSTRVQVRQTVNHKRTFLYLEQIILHNRAKLNISNIK 182
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ G+DF+F +RS A +FV+ + P R ++L+S D KSN +Y+ EI+ +
Sbjct: 183 EYPHGLDFYFTSRSDAGRFVDLLHNSVPGRHSESQKLISADLKSNTATIEYSIMFEIAQL 242
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C++DL+ LP + LG LGPL I KV + I +DP T L A QY+ F +
Sbjct: 243 CKDDLVYLPQRFYNQLGGLGPLCIVSKVNSRIHFIDPLTGNTGSLTASQYFEKPFTAFRD 302
Query: 312 SRQLVEYIVLDVEVVSSEVNVG--GSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
R VE IVL VS E N G G + +A ++ R SD T+ + RT L P
Sbjct: 303 RRHKVEGIVL----VSEEENNGRRGQESSIAYVELQRESDMYDGVTVHT-RTCFLSLCKP 357
Query: 370 GDYALGYDLYSANNNDME 387
G +YS +N D +
Sbjct: 358 GR---SVAVYSLDNIDFQ 372
>gi|308161032|gb|EFO63494.1| Nonsense-mediated mRNA decay protein 3 [Giardia lamblia P15]
Length = 491
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 210/368 (57%), Gaps = 6/368 (1%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
QT G +LCC CG+P+ PN +MC+ CLR+ V+ITEG+ + HC +C+ Y ++
Sbjct: 5 QTYG-ILCCSCGVPIEPNPTSMCLPCLRARVNITEGIDTEQTLIHCHQCNRYNVGNDKYV 63
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A+LES +LL C+K+++ L VR+V+A FIWTE HSKRIKV+L +Q EV GA+L+Q +
Sbjct: 64 AAELESPQLLGICLKKIRGLQHVRVVDAGFIWTEEHSKRIKVRLLIQAEVQQGAVLQQEH 123
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
+ + +C C W VQ+RQ V H+RTF YLEQ+IL++ A I
Sbjct: 124 ICTFTIVSTLCVPCQYTHTE-HTWSTRVQVRQTVNHKRTFLYLEQIILRNRAKLNISNIK 182
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ G+DF+F +RS A +FV+ + P R ++L+S D KSN +Y+ EI+ +
Sbjct: 183 EYPHGLDFYFTSRSDAGRFVDLLHSSVPGRHSESQKLISADLKSNTATIEYSIMFEIAQL 242
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C++DL+ LP + LG LGPL I KV + I +DP T + L A QY+ F +
Sbjct: 243 CKDDLVYLPRRFYNQLGGLGPLCIVSKVNSRIHFVDPLTGQMGSLTASQYFEKPFTAFRD 302
Query: 312 SRQLVEYIVL-DVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
R VE IVL E S+E GS +A ++ R +D + T+ + +T+L L PG
Sbjct: 303 RRHKVEGIVLVSEEENSNEKRTQGSP--IAYVELQRENDMYEGVTVHT-KTYLSSLCKPG 359
Query: 371 DYALGYDL 378
Y L
Sbjct: 360 RSVAVYSL 367
>gi|403221190|dbj|BAM39323.1| nonsense-mediated mRNA decay protein [Theileria orientalis strain
Shintoku]
Length = 512
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/483 (32%), Positives = 251/483 (51%), Gaps = 32/483 (6%)
Query: 19 CCKCGIPMA-PNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
C CG +A P ++ MC CL VD++E + H I C C + W+ +LES
Sbjct: 21 CFLCGEFVAVPTSSRMCATCLTKSVDLSENVSTHCTILQCSTCARFYHD--RWLNCELES 78
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQ 137
KELL+ C+K++K + +++V A F WTEPHSK++K+KL QKEV N ++EQ+ +++
Sbjct: 79 KELLSICLKKIKGIELLKIVEANFKWTEPHSKKLKIKLLAQKEVDNNCVVEQTLNIDFAI 138
Query: 138 QDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGI 197
C +C ++ P W A VQ+RQ ++ LEQ+ILK++A + I G
Sbjct: 139 VSTQCSNCKQMYT-PHTWKAMVQIRQKTKDKKHILLLEQIILKNNAHENVLNILSRRNGF 197
Query: 198 DFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLI 257
D F +R+ A KF +FV + ++ K+LV+ D +N +NYKYT V + PIC +DL+
Sbjct: 198 DLHFPSRNDAQKFADFVTDKIVAQVKNSKKLVTQDVNNNKYNYKYTLHVSLVPICVDDLV 257
Query: 258 CLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK---------- 307
L PKV G + P ++C +T++I LLDPFTLR + +D+YWR F+
Sbjct: 258 FLSPKVCSVYGGVSPFLLCTNLTSTITLLDPFTLRRLEISSDKYWRHPFESRKSNERKSN 317
Query: 308 ---SLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLG 364
S+ L E+IVL++E S+ S Y L D ++ + + ++HLG
Sbjct: 318 NGVSVFNKFNLYEFIVLNIERDYSKKQ--ESHYELVDVEIMA----SNSSKVIYTKSHLG 371
Query: 365 HLLNPGDYALGYDLYSANNNDM--ELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
+L G LGYD+ N N + E K + + IL++K+ +K+S +W L
Sbjct: 372 KILTVGGSYLGYDIRRINMNGLSEEETNIKKKIPFDVILVRKA------KKQSLKHNWVL 425
Query: 423 KSL-DMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDG 481
K + + + K + + E +F ++ EL+ +I YRN Q + +T G
Sbjct: 426 KRIFRKKSNKEKDDLEDDIDEDELLDFKDEIISRKELQKDIDFYRNPRSQMPKEVDITPG 485
Query: 482 EDV 484
D+
Sbjct: 486 SDL 488
>gi|428184182|gb|EKX53038.1| hypothetical protein GUITHDRAFT_101481 [Guillardia theta CCMP2712]
Length = 475
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/472 (33%), Positives = 241/472 (51%), Gaps = 75/472 (15%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC+CG P NA++MC CL+S VDI+EG+ V++ C C YL P+ W +LES
Sbjct: 30 LCCECGTPTTWNASSMCHNCLKSRVDISEGITTSVMLQRCRACGRYLDAPKMWKSCELES 89
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQ 137
+ELL+ C+KR+K +N KVK+ VQKEV G +L+Q+
Sbjct: 90 RELLSICLKRIKGMN-------------------KVKITVQKEVYTGVLLQQNV------ 124
Query: 138 QDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGI 197
A +W+ VQ RQ ++RTF+ LEQLILKH A R + + ++ GI
Sbjct: 125 ------------AAKQEWLVVVQCRQRAENKRTFYLLEQLILKHKAHKRTLNVKEVPDGI 172
Query: 198 DFFFGNRSHAVKFVEFVGKVAPVRSRHDK-QLVSHDPKSNNFNYKYTFSVEISPICREDL 256
DF+F N HA KF FV V P R + +++S D K+N K +EI P+C++D+
Sbjct: 173 DFYFANLKHATKFSAFVTSVIPSRRKAGGDRVMSQDLKNNVAKMKQAIPIEIIPLCKDDI 232
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
CL PK +LG +GPLV+ + V ++ ++D + ++ Y+R +L T + +
Sbjct: 233 FCLHPKQHNNLGCIGPLVVVVSVGPNLRVMDWQRMEIHDFRSEVYFRQPRYALQTIKNAI 292
Query: 317 EYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGY 376
EYIV+D V +++ A+ +A+ SD G ND + +HLG +L GD LGY
Sbjct: 293 EYIVIDCHPTGLAVG----QFLQAEVTLAKASDLGSNDIQVTCLSHLGAILQAGDTVLGY 348
Query: 377 DLYSANNNDMELDKYKGLVLPETILIKK-----------------SYEEKR--------- 410
DL +A ND EL + LVLPE ++KK ++EE+
Sbjct: 349 DLSNAVFNDNELQDWPKLVLPEVFIVKKVGVPFISSSCLMEPSGSAHEEEEDVETQGADQ 408
Query: 411 ---LRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELR 459
R + P S + + V S+ ++ ++ +YE FL D+E +P +R
Sbjct: 409 GGGTRVPAPPVSCDVGRQEEGVYQSRLKSSRD----DYEMFLNDIESDPTVR 456
>gi|159118843|ref|XP_001709640.1| Nonsense-mediated mRNA decay protein 3 [Giardia lamblia ATCC 50803]
gi|157437757|gb|EDO81966.1| Nonsense-mediated mRNA decay protein 3 [Giardia lamblia ATCC 50803]
Length = 491
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 208/370 (56%), Gaps = 10/370 (2%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
QT G +LCC CG+P+ PN +MC+ CLR+ V+IT+G+ + HC +C+ Y ++
Sbjct: 5 QTYG-ILCCSCGVPIEPNPTSMCLPCLRARVNITKGIDTEQTLIHCHQCNRYNVGNEKYV 63
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A+LES +LL C+K+++ L VR+V+A FIWTE HSKRIKV+L +Q EV GA+L+Q +
Sbjct: 64 AAELESPQLLGICLKKIRGLQHVRVVDAGFIWTEEHSKRIKVRLLIQAEVQQGAVLQQEH 123
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
+ + +C C W VQ+RQ V H+RTF YLEQ+IL + A I
Sbjct: 124 ICTFTVVSTLCVPCQYTHTE-HTWSTRVQVRQTVNHKRTFLYLEQIILHNRAKLNISNIK 182
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ G+DF+F +RS A +FV+ + P R ++L+S D KSN +Y+ EI+ +
Sbjct: 183 EYPHGLDFYFTSRSDAGRFVDLLHNSVPGRHSESQKLISADLKSNTATIEYSVMFEIAQL 242
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
C++DL+ LP + LG LGPL I KV + I +DP T L A QY+ F +
Sbjct: 243 CKDDLVYLPRRFYNQLGGLGPLCIVSKVNSRIHFVDPLTGNTGSLTAAQYFEKPFTAFRD 302
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSK---YVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
R VE IVL VS E N G + +A ++ R +D + T+ + +T+L L
Sbjct: 303 RRHKVEGIVL----VSEEENSSGKRGQGSPIAYVELQRENDMYEGVTVHT-KTYLSSLCK 357
Query: 369 PGDYALGYDL 378
PG Y L
Sbjct: 358 PGRSVAVYSL 367
>gi|123974840|ref|XP_001330128.1| NMD3 family protein [Trichomonas vaginalis G3]
gi|121896049|gb|EAY01212.1| NMD3 family protein [Trichomonas vaginalis G3]
Length = 438
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 249/458 (54%), Gaps = 24/458 (5%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
QT + CC CGI + PN NMCV C R ++ EG+ + + I++C +C Y + W+
Sbjct: 5 QTAVKIPCCICGIMIEPNPNNMCVECFRRRLNQKEGVPEQLEINYCRDCGRYQESLTHWV 64
Query: 72 KAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
A+LESKELL C+K+ ++R +A+F+WTEPHSKR++V++ V +E +G IL QS
Sbjct: 65 NAELESKELLQICIKKFSPNLKIR--DAKFLWTEPHSKRLRVQVTVDREDFSGTILRQST 122
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRIT 191
+V Y+ + C +C + + D W A VQLRQH +R+ F++EQ+I+ ++AA I
Sbjct: 123 IVTYIVKTVQCKTCQELATHRDHWKAIVQLRQHSDSKRSMFWIEQMIINNEAAKETSAIE 182
Query: 192 QMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPI 251
+ G+DF F + S A KF+ F+ + PV ++ + D + +++ +Y++S+ I I
Sbjct: 183 RRPDGLDFQFNDNSDAKKFISFIKSIIPVSVKNSDTVKGQDLVNMSYDIRYSYSLTIPSI 242
Query: 252 CREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLT 311
REDL+ LP K+ S G L + K+ I ++P T + LD+ + +S L++
Sbjct: 243 SREDLVLLPKKIFESTGRQSRLCLVSKMGRQIHFVNPLTGHNFVLDSKSIFSNSIDPLIS 302
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
+L ++VL + +S + LAD ++ +G D I +R+HLG+ + G+
Sbjct: 303 HDRLTRFVVLSKDEISK-----NGDFTLADFELTDEETYG--DRIV-VRSHLGNTIEIGN 354
Query: 372 YALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDD 431
YDL S + D + K + I++ K+ +EK+ R+ K+ +L
Sbjct: 355 VVNCYDLRSESFTDEAEKQIKKIDFERVIIVNKARDEKK-----NSRNKKVLTL------ 403
Query: 432 SKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD 469
T +E ++ E+FL ++E++P+L I+ N D
Sbjct: 404 --APTTKED-DRALEQFLDEMEDDPQLVSKINTVENDD 438
>gi|397630323|gb|EJK69725.1| hypothetical protein THAOC_08991 [Thalassiosira oceanica]
Length = 511
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 230/393 (58%), Gaps = 19/393 (4%)
Query: 92 NRVRLVNAEFIWTEPHSKRIKVKLKVQKEV-LNGAILEQSYVVEYVQQDHMCDSCSRVQA 150
RVRLV+A ++WTEPHS R+K++L +Q+EV G IL+QS+VV +V ++ C C +
Sbjct: 21 GRVRLVDAAWVWTEPHSMRLKIRLTIQREVSAGGTILQQSFVVTFVVRNQQCVEC-QAAF 79
Query: 151 NPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKF 210
W + VQ+RQ V H+RTF YLEQLILKH A + I G+DF+F ++ A +F
Sbjct: 80 RQGSWKSLVQVRQRVGHKRTFLYLEQLILKHSAHRGCLSIETFKDGMDFYFPDKGKAARF 139
Query: 211 VEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNL 270
+ F+ V P++ + K+L+S D KSN NYKYT VEI +C++DL+ LP ++A +GN+
Sbjct: 140 ISFLEDVVPIKVKSSKKLISTDDKSNVSNYKYTNLVEICTLCKDDLLFLPKRLARHIGNI 199
Query: 271 GPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTS--RQLVEYIVLDVEVVSS 328
LV+ ++N I ++DP + + ++++ YWR +F+ ++T+ +L Y++L + V
Sbjct: 200 SRLVLVKNISNVIQVIDPLSGQTANIESEAYWRDTFRPVVTAARTRLSRYVILGKDPVFL 259
Query: 329 EVNV---GGSK---YVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSAN 382
E NV G SK LA AR SD G ND+ R+HLG+L+ GD LGYDL
Sbjct: 260 ERNVSKRGVSKKQRSKLALVTAARESDLGVNDSQIEERSHLGYLMKSGDVCLGYDLKDCQ 319
Query: 383 -NNDMELDKYKGLVLPETILIKKSYEEKRLRK--RSKPRSWKLKSLDMEVDD------SK 433
D D P+ + ++K Y + +K R + L+ LD++ + +
Sbjct: 320 LVEDEAEDMRTSGKFPDVVFVRKLYGGVATGELDAAKKRIFTLQRLDVKRGEEDKQRGKR 379
Query: 434 GRTDQEKMNKEYEEFLRDLEENPELRFNISLYR 466
G+ D E + + E+FL++LE + E+R +++Y+
Sbjct: 380 GKKDAEMEDMDKEDFLQELEADKEMRTRVNIYK 412
>gi|383173831|gb|AFG70428.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|383173832|gb|AFG70429.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|383173833|gb|AFG70430.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|383173834|gb|AFG70431.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|383173835|gb|AFG70432.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|383173836|gb|AFG70433.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
Length = 138
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 115/138 (83%), Positives = 130/138 (94%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC CGI M PNAANMCV C+R++VDITEGLQKHV I HCPEC+ YLQPP+TWIKAQLES
Sbjct: 1 LCCMCGISMPPNAANMCVNCIRTQVDITEGLQKHVTILHCPECNSYLQPPKTWIKAQLES 60
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQ 137
KELLTFC+KRLKNLN+VRLV+AEFIWTEPHSKRIKVKL++QKEVLNGAILEQ+YVVEYVQ
Sbjct: 61 KELLTFCIKRLKNLNKVRLVHAEFIWTEPHSKRIKVKLRIQKEVLNGAILEQAYVVEYVQ 120
Query: 138 QDHMCDSCSRVQANPDQW 155
QDHMC+ C+RVQ+NPDQ+
Sbjct: 121 QDHMCEHCTRVQSNPDQY 138
>gi|361066975|gb|AEW07799.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|361066977|gb|AEW07800.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
Length = 138
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 114/138 (82%), Positives = 130/138 (94%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC CGI M PNAANMCV C+R++VDITEGLQKHV I HCPEC+ YLQPP+TWIKAQLES
Sbjct: 1 LCCMCGISMPPNAANMCVNCIRTQVDITEGLQKHVTILHCPECNSYLQPPKTWIKAQLES 60
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQ 137
KELLTFC+KRLKNLN+VRLV+AEFIWTEPHSKRIKVKL++QKEVLNGAILEQ+YVVE+VQ
Sbjct: 61 KELLTFCIKRLKNLNKVRLVHAEFIWTEPHSKRIKVKLRIQKEVLNGAILEQAYVVEFVQ 120
Query: 138 QDHMCDSCSRVQANPDQW 155
QDHMC+ C+RVQ+NPDQ+
Sbjct: 121 QDHMCEHCTRVQSNPDQY 138
>gi|71033415|ref|XP_766349.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353306|gb|EAN34066.1| hypothetical protein, conserved [Theileria parva]
Length = 491
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 151/472 (31%), Positives = 248/472 (52%), Gaps = 31/472 (6%)
Query: 19 CCKCG-IPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
C CG AP ++ MC CL VD++E + H I C C + W+ +LES
Sbjct: 21 CFLCGEFVSAPTSSRMCSTCLTKSVDLSENVSTHCTILQCVTCTKFYHD--RWLSCELES 78
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQ 137
KELL+ C+K++K ++ +++V+A F WTEPHSK++K+ + VQKEV N ++EQS +++
Sbjct: 79 KELLSVCLKKIKGIDLMKIVDASFKWTEPHSKKLKINVTVQKEVENNCVVEQSLSIDFTI 138
Query: 138 QDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGI 197
C SC ++ P W A VQ+RQ ++ LEQ+ILKH+A + I G
Sbjct: 139 VSTQCASCKQLYT-PHTWKALVQIRQKTKDKKHILLLEQIILKHNAHENVLNILSRRNGF 197
Query: 198 DFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLI 257
D F +R+ A KF +FV + ++ K+LV+ D +N +NYKYT V + PIC +DL+
Sbjct: 198 DLHFSSRNDAQKFADFVSDKIVSQIKNSKKLVTQDVNNNKYNYKYTLHVSLVPICTDDLV 257
Query: 258 CLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVE 317
L PKV+ G + P ++ + +T++I+L+DPFTLR + S+ L E
Sbjct: 258 FLSPKVSSIYGGISPFLLVVNLTSTISLMDPFTLRRLEV-----------SMFNKFNLCE 306
Query: 318 YIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYD 377
+IVL++E + + +Y L D ++ + I ++HLG +L G LGYD
Sbjct: 307 FIVLNIEKDYTRKS-KNQQYELVDVEIMP----SNSSKIIYTKSHLGKILTVGGTYLGYD 361
Query: 378 LYSANNNDM-ELDKYKGLVLP-ETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGR 435
+ N N + E + +P + IL++K+ +K S +W LK + + ++ K +
Sbjct: 362 IKRINMNGLSEQETNISNRIPFDVILVRKA------KKYSSKHNWVLKRMFRKKNNQKDK 415
Query: 436 ---TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDV 484
T+ + E +F ++ E + +I YRN QP + +T D+
Sbjct: 416 DNDTEDDIDEDELLDFKEEIVNRKEFQKDIDFYRNPRAQPRKEFDITPSSDM 467
>gi|156086916|ref|XP_001610865.1| nonsense-mediated mRNA decay protein [Babesia bovis T2Bo]
gi|154798118|gb|EDO07297.1| nonsense-mediated mRNA decay protein, putative [Babesia bovis]
Length = 549
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/513 (30%), Positives = 259/513 (50%), Gaps = 58/513 (11%)
Query: 4 DAGMFTVPQ-TVGSVLCCKCG--IPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPEC 60
DA F + + + CC CG +P P A+ MC C+ V++ + + H I C C
Sbjct: 5 DAATFASTEPSYAPMFCCLCGDVVP-KPTASRMCHLCITKNVNLAQEVTTHTTILQCGTC 63
Query: 61 DCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
+ W+K LESKELL+ C+K+ K L ++++NA F WTEPHSK++KVK+ VQKE
Sbjct: 64 KMFFHD--RWLKCDLESKELLSICLKKAKGLENMKIINAAFSWTEPHSKQLKVKVCVQKE 121
Query: 121 VLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
V + ++EQS+V+ + + CD C R+ P W A VQ+RQ +R LEQ+I+K
Sbjct: 122 VDSNFVVEQSFVITFSIKSSQCDHCKRMYT-PHTWKAMVQIRQKTKDKRHILMLEQIIIK 180
Query: 181 HDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNY 240
H+A I G D F +++ A KF +FV + R+ K+L++ D +N ++Y
Sbjct: 181 HNAHENVTNILSRPNGFDLHFQSKTCAQKFADFVSDKIVSQVRNSKKLITQDSVNNKWDY 240
Query: 241 KYTFSVEISPICREDLI-----------CLPPKVAVSLGNLGPLVICMKVTNSIALLDPF 289
KYT V++ PIC +D++ LPPKVA G + P ++C+ +T +I+L+DPF
Sbjct: 241 KYTLQVQLIPICADDMVRANNDVNISQVFLPPKVASINGGISPFLLCVNLTTTISLIDPF 300
Query: 290 TLRHCFLDADQYWRSSFKS----------------------LLTSRQLVEYIVLDVEVVS 327
TLR + D++W++ F S L + + + + + + +S
Sbjct: 301 TLRTLDISNDKFWKNPFTSRKCWKQQTDAQQFSTSSIFATLLFSILRKIGAVSIHTQYMS 360
Query: 328 SEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDME 387
+ + L D ++ V+ T+ ++HLG++L GD GYD+ N N +
Sbjct: 361 RLCEMVNIRCRLVDVELMAVNA----STVIYTKSHLGNILTVGDTFSGYDIRKINLNGLA 416
Query: 388 LDKYK-GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSL-DMEVDD-------SKG-RTD 437
++ +P +++ + + K+L K +W LK + D+ + + KG +D
Sbjct: 417 EEQTDISNKIPFDVILVRKVKTKKLFK----TNWVLKRIVDVRLMNWLLYPLQKKGSSSD 472
Query: 438 QEKMNKEYEEFLRDLEENPELRFNISLYRNKDY 470
E E +F +L EL+ N+ Y+N Y
Sbjct: 473 DEIEEDELLDFKEELINKKELQKNVEFYQNPRY 505
>gi|308080628|ref|NP_001183863.1| uncharacterized protein LOC100502456 [Zea mays]
gi|238015092|gb|ACR38581.1| unknown [Zea mays]
Length = 249
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/238 (56%), Positives = 176/238 (73%), Gaps = 9/238 (3%)
Query: 267 LGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVV 326
+G LGPLV+C+KVTN+IALLDP TLR L+ +Y +FK+ LTS+QLVEYIVLD+E
Sbjct: 1 MGGLGPLVLCVKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEPE 60
Query: 327 SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDM 386
S E+ + GS+Y LA AQVAR+SDFGKND IF++RTHLGHLLNPGD+ALGYDLY AN ND
Sbjct: 61 SPEICIDGSRYQLAYAQVARMSDFGKNDAIFTVRTHLGHLLNPGDHALGYDLYGANLNDD 120
Query: 387 ELD-KYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDS-KGRTDQEKMNKE 444
++D LPE +L+KKSYE KR + R WKLK L +E D + K + ++EK E
Sbjct: 121 DMDMAMTRYSLPEVVLVKKSYE-----KRPRTRRWKLKRLPVEEDAANKAKGEEEKRLDE 175
Query: 445 YEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSDD 502
YE FLRDLE + + ++LY+N+DY+ SEMAS T G+D+P+VP++EL+ DL L D+
Sbjct: 176 YEAFLRDLEVDSGMWSKMNLYKNEDYR-SEMAS-TVGDDIPTVPIEELIEDLTLGDDE 231
>gi|428673002|gb|EKX73915.1| nonsense-mediated mRNA decay protein, putative [Babesia equi]
Length = 480
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 147/421 (34%), Positives = 232/421 (55%), Gaps = 19/421 (4%)
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I +LESKELL+ C+K++K +N +++++A+F WTEPHSK++K+++ VQKEV N I+EQ+
Sbjct: 64 INCELESKELLSLCLKKIKGINLLKIIDAKFNWTEPHSKKLKLQILVQKEVENNCIVEQT 123
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
VE+ + C +C ++ P W A VQ+RQ ++ LEQ+ILK++A + I
Sbjct: 124 LFVEFTIRSTQCAACKQMYT-PHTWKALVQIRQKTKDKKHMLLLEQIILKNNAHENVLNI 182
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
G D F NR A KF EFV + ++ K+L++ D +N +NYKYT V + P
Sbjct: 183 LSRRNGFDLHFANRPDAQKFAEFVSDKIVSQLKNSKKLITADMSNNKYNYKYTIHVSLIP 242
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
+C +D++ L PKVA G + P ++C+ +T++I LLDPFTLR + +D+YWR+ F SL
Sbjct: 243 VCTDDVVFLTPKVASMYGGISPFLLCVNLTSTITLLDPFTLRKLDISSDKYWRNPFSSLF 302
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
T L E+I+L+V+ S+ S Y L D +V V+ + I ++HLG L G
Sbjct: 303 TKFNLCEFIILNVDRDYSK-KWDDSPYELVDVEVMAVN----SSKIIYTKSHLGKSLTVG 357
Query: 371 DYALGYDLYSANNNDM--ELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
GYD+ N N + E + + E IL++K+ +K + +W LK +
Sbjct: 358 STFSGYDISRINLNGLSEEETDIENRIPFEVILVRKT------KKPTSKHNWVLKRI-FT 410
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
+ +E E +F ++ EL I YRN P + T+ EDV S+
Sbjct: 411 NKKDQDEEMEEIDEDELLDFKDEIMSKKELHNQIDFYRN----PKSPKNKTEDEDVNSIS 466
Query: 489 L 489
+
Sbjct: 467 V 467
>gi|376335226|gb|AFB32304.1| hypothetical protein 0_11808_01, partial [Pinus mugo]
Length = 138
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/138 (79%), Positives = 129/138 (93%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC CGI M PNAANMCV C+R++VDIT+GLQKHV I HCP+C+ YLQPP+TWIKAQLES
Sbjct: 1 LCCMCGISMPPNAANMCVNCIRTQVDITKGLQKHVTILHCPKCNSYLQPPKTWIKAQLES 60
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQ 137
KELLTFC+KRLKNLN+VRLV+A+FIWT+PHSKR KVKL++QKEVLNGAILEQ+YVVEYVQ
Sbjct: 61 KELLTFCIKRLKNLNKVRLVHAKFIWTKPHSKRNKVKLRIQKEVLNGAILEQAYVVEYVQ 120
Query: 138 QDHMCDSCSRVQANPDQW 155
QDHMC+ C+RVQ+NPDQ+
Sbjct: 121 QDHMCEHCTRVQSNPDQY 138
>gi|145479251|ref|XP_001425648.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392719|emb|CAK58250.1| unnamed protein product [Paramecium tetraurelia]
Length = 445
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/453 (30%), Positives = 251/453 (55%), Gaps = 27/453 (5%)
Query: 17 VLCCKCGIPMAP--NAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
+ C C + P N+C CL ++++IT+ + I C C Y +PP W+ +
Sbjct: 8 IFCPLCELEFEPKLTKTNICPNCLIAQMNITQDIDNDKEILLCRNCRRYQRPP--WVLCE 65
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
+SKELL C+K++ L +++ +FI+TEP +K+IK+++ VQKE +NG ++ S ++
Sbjct: 66 RDSKELLAICLKKVIGLQEKTIIDTKFIFTEPSTKQIKLQITVQKEAMNGTCIQDSKILN 125
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
+ + H C+ C R + P W A +QLRQ V H+++F+YLEQLIL+H + +++ D
Sbjct: 126 FEEVYHQCEDCKR-EFTPHIWGACIQLRQRVNHKKSFYYLEQLILQHHMNQQMLKVESAD 184
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G++F+F ++ A+ +EF+ P++ + K++ S KYTF V++ IC++
Sbjct: 185 DGMNFYFKQKNQALHMLEFIRSYLPIQVKESKEVYSF--------IKYTFVVDVPRICKD 236
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF--KSLLTS 312
DL+ LP K+ LG + + IC +V +SI L+DP L+ C + A+QY++ +++
Sbjct: 237 DLVILPHKLCHQLGGINRIQICYRVASSIQLIDPTKLKVCEISAEQYFKHDLDIRTMPLR 296
Query: 313 RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDY 372
E+ +LDVE + N ++ + V + D + + +++HLG+ L+ G
Sbjct: 297 DNCDEFTILDVEKIKPSKNDQNHPFLNSLCTVELMKDNDSDYNQYQVKSHLGNFLSAGMT 356
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM-EVDD 431
G+DL NN ELD+ PE I+I++ E ++K R +LK LD+ E +
Sbjct: 357 VQGFDLNKYNN---ELDEIYD--KPEIIIIRRKPE------KNKKRKTQLKRLDIEENQE 405
Query: 432 SKGRTDQEKMNKEYEEFLRDLEENPELRFNISL 464
K + + ++ EEFL D+E++ L+ ++L
Sbjct: 406 KKNKKKEGLEEQQIEEFLEDIEQDQHLQETLNL 438
>gi|308457034|ref|XP_003090920.1| hypothetical protein CRE_27919 [Caenorhabditis remanei]
gi|308260006|gb|EFP03959.1| hypothetical protein CRE_27919 [Caenorhabditis remanei]
Length = 477
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 192/334 (57%), Gaps = 12/334 (3%)
Query: 139 DHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGID 198
+ +CD C R +A D W A VQ+RQ ++T FYLEQL+LKH A + + GID
Sbjct: 29 NELCDDCRRAEAK-DFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECTGVKPVPTGID 87
Query: 199 FFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLIC 258
F+F + A KFV+F+ V P + + ++LVSHD K+N ++YK+TF VEI PICR++++C
Sbjct: 88 FYFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCVEIVPICRDNIVC 147
Query: 259 LPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEY 318
LP K A GN+ +V+C++V+N I L+DP L+ + A +WR F SL +QL E+
Sbjct: 148 LPKKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWREPFDSLCGPKQLTEF 207
Query: 319 IVLDVEVVSSEVNVGGSKYV-----LADAQVARVSDFGKNDT-IFSIRTHLGHLLNPGDY 372
VLDVE + + G Y+ LAD + R G +D S RTHLGHLL+PGD
Sbjct: 208 YVLDVESIDNFERKAGHGYISKKHELADVWLVRSDQVGMSDAQSLSARTHLGHLLSPGDL 267
Query: 373 ALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDS 432
+ +D+ + N N+ D +P+ I+++K ++ R R R WKLK L V +
Sbjct: 268 VMAFDMKNCNVNNATFDAMSVDNVPDAIIVRKVFDRSR---RVAERQWKLKKL--VVGGN 322
Query: 433 KGRTDQEKMNKEYEEFLRDLEENPELRFNISLYR 466
+ + E++ F+ D+EE+ +R + +R
Sbjct: 323 IVGNETASVADEFQGFMEDIEEDALMRARMCAWR 356
>gi|194383890|dbj|BAG59303.1| unnamed protein product [Homo sapiens]
Length = 323
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 199/329 (60%), Gaps = 18/329 (5%)
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
+RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSV
Sbjct: 5 TLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSV 64
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
EI PIC+++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F
Sbjct: 65 EIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPF 124
Query: 307 KSLLTSRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRT 361
SL +QL E+IV++ +V G+ K+ L + V + S+ + F RT
Sbjct: 125 NSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RT 183
Query: 362 HLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWK 421
HLGHLLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WK
Sbjct: 184 HLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWK 240
Query: 422 LKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDG 481
LK L E ++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD
Sbjct: 241 LKELARERENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDD 292
Query: 482 EDVPSVPLDELLADLDLKSD-DGEGDDSM 509
E P + L E+L DL + D GE SM
Sbjct: 293 EGAPRISLAEMLEDLHISQDATGEEGASM 321
>gi|154418247|ref|XP_001582142.1| NMD3 family protein [Trichomonas vaginalis G3]
gi|121916375|gb|EAY21156.1| NMD3 family protein [Trichomonas vaginalis G3]
Length = 458
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/460 (31%), Positives = 244/460 (53%), Gaps = 21/460 (4%)
Query: 7 MFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66
M +T+ + CC CGI + PN +NMCV CL+ I++ L + + +++C C Y +
Sbjct: 1 MTEFTETLNKIPCCICGIMIEPNPSNMCVDCLQKNYSISDKLPQSLSVNYCRGCGRYQEN 60
Query: 67 PRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAI 126
WI A LES ELL C+ RL N+ ++V+A+F++TEPHS+RI+V+L ++
Sbjct: 61 KNHWINAPLESPELLKICLSRLTNVKDAKIVDAKFLYTEPHSRRIRVELTLESVTPENVT 120
Query: 127 LEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAAR 186
L QS +V YV C C W + VQLRQ +R F++EQ IL ++A
Sbjct: 121 LRQSVIVTYVVTLQQCPDCQEAATPRAHWNSNVQLRQAGNSKRLLFWIEQQILTYNAHEG 180
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
+ ++ G+DF + +++ A K V FV P+ ++ +L+S D +S + +++F V
Sbjct: 181 CTGVVRVSDGLDFHYPDKAGAGKLVNFVKSKIPILTKESGKLLSEDFQSMTADVRFSFLV 240
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
+ P+ R+DLI LP ++ + GN + + K++ I L+DPFT R +DA +W+ F
Sbjct: 241 RLPPMSRQDLIVLPKEIVSANGNHSHVALVHKISKIIRLVDPFTGRFIDIDAITFWKKPF 300
Query: 307 KSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHL 366
+ + L ++VL+VE + + N ++ +AD + ++D + F +RTHLG
Sbjct: 301 EPVFVHEDLKRFVVLNVEHI--DTNDRDCRFDMADVE---ITDEETYEDRFIVRTHLGGK 355
Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
L G L YD N D +K +PE I+ ++ EK KP+ K+K L
Sbjct: 356 LREGFVVLCYDRRITNIPDTVAAVFKKKKIPEIIIAGRAPPEK------KPK-MKVKELT 408
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYR 466
+ D D E+ N F+ DL ++ E+R ++++Y+
Sbjct: 409 PHLSD-----DDEQFNA----FMEDLVDDSEMRQDVNIYK 439
>gi|260788891|ref|XP_002589482.1| hypothetical protein BRAFLDRAFT_125192 [Branchiostoma floridae]
gi|229274660|gb|EEN45493.1| hypothetical protein BRAFLDRAFT_125192 [Branchiostoma floridae]
Length = 379
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/295 (43%), Positives = 189/295 (64%), Gaps = 18/295 (6%)
Query: 226 KQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIAL 285
++L+SHD KSN +NYK TFSVEI P+C+++++CLPPK+A LGNL + +C++V+ ++ +
Sbjct: 94 EKLLSHDVKSNTYNYKSTFSVEIVPVCKDNIVCLPPKLAQQLGNLNQICVCLRVSTTVHI 153
Query: 286 LDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVV--SSEVNVGGS-----KYV 338
+DP TL+ + A +WR+ F+SL RQL EY+VL+VE + V+V G K++
Sbjct: 154 IDPSTLQIADVTAPVFWRTPFQSLCEPRQLTEYMVLEVEPIRHHERVHVAGEGAKSHKHL 213
Query: 339 LADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPE 398
LAD VAR SD G ND + RTHLGHLL GD G+DL +AN N+ LDK K LP+
Sbjct: 214 LADVWVARSSDLGMNDNQYHCRTHLGHLLRAGDLVHGFDLSNANVNNDFLDKMKADRLPD 273
Query: 399 TILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPEL 458
+L+KK +++ KR + R+WKLK L E++ D + M ++Y EFL DLEE+P
Sbjct: 274 VVLVKKVFDKS---KRHRRRNWKLKRLAKELE----TMDTDSMERDYNEFLEDLEEDPLY 326
Query: 459 RFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSD--DGEGDDSMRE 511
R ++++YR D + + S TD +D P + L E+L DL + D GEG D M +
Sbjct: 327 RKDVNIYR--DAEKLAVESDTDDDDAPRISLQEMLEDLHISEDATGGEGADMMTD 379
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 56/115 (48%), Gaps = 52/115 (45%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T G++LCC+CG+P+ PN ANMCVA
Sbjct: 13 TQGNILCCQCGVPIQPNPANMCVA------------------------------------ 36
Query: 73 AQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
C++ +V L++A F+WTEPHSKRIK+KL +QKEV+NGAIL
Sbjct: 37 -----------CLR-----TQVHLIDAGFVWTEPHSKRIKLKLTIQKEVVNGAIL 75
>gi|67967886|dbj|BAE00425.1| unnamed protein product [Macaca fascicularis]
Length = 323
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 198/329 (60%), Gaps = 18/329 (5%)
Query: 187 AIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSV 246
+RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSV
Sbjct: 5 TLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSV 64
Query: 247 EISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSF 306
EI P+C+++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F
Sbjct: 65 EIVPVCKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPF 124
Query: 307 KSLLTSRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRT 361
SL +QL E+IV++ V G+ K+ L + V + S+ + F RT
Sbjct: 125 NSLCHPKQLEEFIVMECSTVRDIKRAAGAGMISKKHALGEVWVQKTSEMNTDKQYF-CRT 183
Query: 362 HLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWK 421
HLGHLLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WK
Sbjct: 184 HLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWK 240
Query: 422 LKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDG 481
LK L E ++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD
Sbjct: 241 LKELARERENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDD 292
Query: 482 EDVPSVPLDELLADLDLKSD-DGEGDDSM 509
E P + L E+L DL + D GE SM
Sbjct: 293 EGAPRISLAEMLEDLHISQDATGEEGASM 321
>gi|401828581|ref|XP_003888004.1| ribosome stability and mRNA decay protein [Encephalitozoon hellem
ATCC 50504]
gi|392999012|gb|AFM99023.1| ribosome stability and mRNA decay protein [Encephalitozoon hellem
ATCC 50504]
Length = 421
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 149/455 (32%), Positives = 247/455 (54%), Gaps = 49/455 (10%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCCKCGI + P NMC CL +EV I+ +++ + + C C+ YLQPP+ W++
Sbjct: 2 ILCCKCGILIEPRLMNMCDRCLVTEVTISAKVKRSLSVERCRGCERYLQPPKNWVELSWG 61
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
SKE L F +K+ K LN + +V++ FI+TEP+SKRI V L V++ +EQ ++YV
Sbjct: 62 SKEFLLFLIKKNKTLNGLCIVDSNFIYTEPNSKRIMVGLTVRE-----CGVEQPLEMKYV 116
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
++ C C++V+A W + VQ+R H+R YLE L+LK++A I Q +G
Sbjct: 117 IRNMQCPDCAKVEA-KQFWNSIVQVRHKSRHKRMMIYLEHLVLKNNAYKDTSNIKQRKEG 175
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ +R+ A++ V F+ V PVR++ ++L+S D ++ NYK++ SVEI+ +C++DL
Sbjct: 176 LDFYYIDRNAAIRMVNFLQSVLPVRTKVSERLISKDVHTSKCNYKFSHSVEIASLCKDDL 235
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRS--SFKSLLTSRQ 314
+ + PK+ SLG +G LVI K+ SI L D +++ + YW + FK L++S
Sbjct: 236 VVVGPKIRQSLG-VGSLVIVQKIATSIVLFDVSSMKSVKIAGSFYWSNHDEFKILMSSSD 294
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYAL 374
Y V ++ + + G+ Y L SD ++ R HLG+ + D L
Sbjct: 295 FTRYTV----IMKNNRRMEGAGYDLTVT-----SD---HNEFSEARFHLGN-VEEDDEVL 341
Query: 375 GYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKG 434
GYDL N DK PE +L++K P+S + +D+
Sbjct: 342 GYDLRHLNLTVECEDK------PEVVLVRKM-----------PKSDVVWKIDV------- 377
Query: 435 RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD 469
+D+ KM EY F+ D+E + E+ + ++ ++
Sbjct: 378 -SDENKM--EYRLFVEDVENDKEMIEGLCTFKGEE 409
>gi|195560672|ref|XP_002077421.1| GD13524 [Drosophila simulans]
gi|194202532|gb|EDX16108.1| GD13524 [Drosophila simulans]
Length = 218
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 149/218 (68%), Gaps = 1/218 (0%)
Query: 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLN 92
MCV CLR+ VDITE + K ++ C C+ YLQPP WI+A LES+ELL C+K+LK L
Sbjct: 1 MCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQAALESRELLAICLKKLKGLK 60
Query: 93 RVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANP 152
V+LV+A FIWTE HSKRIKVKL V E+ G +L+Q +VVE+ Q+ MC+ C R +A
Sbjct: 61 EVKLVDAGFIWTEQHSKRIKVKLTVHGEITGGTVLQQVFVVEFTVQNQMCNDCHRTEA-K 119
Query: 153 DQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVE 212
D W VQ+RQ +++TF+YLEQLILKH A + I G+DFF+ N +HA + V+
Sbjct: 120 DFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEHGGLDFFYANDNHARRMVD 179
Query: 213 FVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
F+ + P + K+L+SHD SNN+NYKY +SVEI+P
Sbjct: 180 FLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIAP 217
>gi|396082082|gb|AFN83694.1| nonsense-mediated mRNA decay protein [Encephalitozoon romaleae
SJ-2008]
Length = 421
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 239/445 (53%), Gaps = 51/445 (11%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCCKCGI + P NMC CL +EV I+ +++ + + C C+ YLQPP++W++
Sbjct: 2 ILCCKCGILIEPRLMNMCDRCLVTEVTISTKVKRSLSVERCRGCERYLQPPKSWMEFSWG 61
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
SKE L F +K+ K LN + +V++ FI+TEP+SKRI + L +++ +EQ ++YV
Sbjct: 62 SKEFLLFLIKKNKTLNGLCIVDSNFIYTEPNSKRIMIGLTIRE-----CGIEQPLEMKYV 116
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
++ C C++V+A W + VQ+R H+R YLE L+LK+ A I Q +G
Sbjct: 117 IRNMQCPDCAKVEA-KQFWNSLVQVRHKGRHKRMMIYLEHLVLKNSAYEDTSNIKQRKEG 175
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ +R+ A++ V F+ V PVR++ ++L+S D ++ NYK+++SVEI+P+C++DL
Sbjct: 176 LDFYYVDRNAAIRMVNFLQNVLPVRTKMSERLISKDVHTSKCNYKFSYSVEIAPLCKDDL 235
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRS--SFKSLLTSRQ 314
+ + KV SLG +G L + K+ SI L D ++ + YW + F+ L++S+
Sbjct: 236 VVVGEKVKQSLG-IGSLAVIQKIATSIVLFDVNAMKSVKIAGSFYWSNHDEFRILMSSKD 294
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS-IRTHLGHLLNPGDYA 373
Y V V+ + G Y L N FS R HLG+ + D
Sbjct: 295 FTRYTV----VMKNSRRREGIGYDLT---------VTSNQNEFSEARFHLGN-VEEDDEM 340
Query: 374 LGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSK 433
LGYDL N DK PE +L++K PR+ + +D+
Sbjct: 341 LGYDLRHLNLTVECADK------PEVVLVRKM-----------PRNDVVWKIDI------ 377
Query: 434 GRTDQEKMNKEYEEFLRDLEENPEL 458
++ KM EY F+ D+E++ E+
Sbjct: 378 --ANENKM--EYRLFVEDVEKDKEM 398
>gi|219123810|ref|XP_002182210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406171|gb|EEC46111.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 417
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 221/419 (52%), Gaps = 33/419 (7%)
Query: 11 PQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQK------HVIISHCPECDCYL 64
P T + CC CG+ APNAAN C +CL E D+ LQ+ C EC +
Sbjct: 6 PLTAVQIPCCLCGVLTAPNAANQCASCLAQEFDLKGRLQRGPSGAPFATTYQCRECRRFR 65
Query: 65 QPPRTWIKAQLESKELLTFCVKRLKNLN-----RVRLVNAEFIWTEPHSKRIKVKLKVQK 119
+ + A ES ELL C+K + L R+ L++A ++WTEPHS R KV+L V+
Sbjct: 66 RTEKHHEHAGPESPELLAICLKAIPALQSTAEPRLHLIDAGWVWTEPHSMRWKVRLTVRT 125
Query: 120 EVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTH---RRTFFYLEQ 176
E+ ++Q VVE C+ C+R N W A VQLRQ + ++ LE
Sbjct: 126 EI-QAVTVQQRVVVELHNAFRQCNDCNREFTN-RTWQALVQLRQKRSDDAPKKGLTALEM 183
Query: 177 LILKH-DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKS 235
+ K+ + ++I + G DF+F + S+A F ++ +V P+R + K+LVS D +
Sbjct: 184 ALAKNKEIRKHVLKIDAVRNGFDFYFLSLSYAQAFSAYLQRVGPMRVKTSKKLVSQDFTN 243
Query: 236 NNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCF 295
N N KYT ++ P C++DL+ + L G L + KV++ + L+D R
Sbjct: 244 NTANMKYTVVCDLVPFCKDDLVLIKKGAKGKLS--GRLALVTKVSSVVHLMDSSPKREAL 301
Query: 296 LDA------DQYWRSS--FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARV 347
LD+ D Y++ + L S + + ++VLDV+++ + V KY LAD QVAR
Sbjct: 302 LDSQMELSPDAYYKQEKLYTILQASNRTIPFVVLDVDLLENSVE----KYCLADVQVARQ 357
Query: 348 SDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDK--YKGLVLPETILIKK 404
SDFG ND +F+ THLGHL+ PGD +GYDL + D E+++ + VLP+ +L+KK
Sbjct: 358 SDFGVNDEVFNCVTHLGHLIRPGDVVMGYDLVATVGGDWEVEESLHNSFVLPDVVLVKK 416
>gi|85014391|ref|XP_955691.1| nonsense-mediated mRNA decay protein [Encephalitozoon cuniculi
GB-M1]
gi|19171385|emb|CAD27110.1| NON SENSE MEDIATED mRNA DECAY PROTEIN 3 [Encephalitozoon cuniculi
GB-M1]
Length = 424
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 240/464 (51%), Gaps = 48/464 (10%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCCKCGIP+ P NMC CL +EV I+ +++++ + C C+ YL PP++W++
Sbjct: 2 ILCCKCGIPIEPRLMNMCDRCLVTEVTISSKVKRNLAVERCRGCERYLHPPKSWMEFSWG 61
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
SKE L F ++R K LN + +V++ F++TEP+SKRI V L V++ +EQ + YV
Sbjct: 62 SKEFLLFLIRRNKTLNGLCIVDSNFVYTEPNSKRIVVALVVRE-----CGVEQPLEMRYV 116
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
++ C C++V+A W + VQ+R HRR F YLE L+LK++ I Q +G
Sbjct: 117 IRNMQCPDCAKVEAK-QFWNSLVQVRHRAGHRRMFIYLEHLVLKNNVYGDTSNIKQRKEG 175
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ R+ AV+ V F+ V PVR + ++L+S D ++ NYK++ SVEI+P+C++DL
Sbjct: 176 LDFYYIERNAAVRMVSFLQSVLPVRVKVSERLISKDVHTSKCNYKFSHSVEIAPLCKDDL 235
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW--RSSFKSLLTSRQ 314
+ + V SLG +G L I K+ I LLD ++ + YW + K L++S+
Sbjct: 236 VVVGKDVRRSLG-IGSLAIVQKIATGIVLLDARLMKSVKITGSFYWNNQDGLKVLMSSKD 294
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS-IRTHLGHLLNPGDYA 373
+Y V+ + GG+ D V+ G FS R HLG+ + D
Sbjct: 295 FTKYTVV---MKCCRRRAGGA----MDGYDLTVTSDGSE---FSEARFHLGN-VEEDDEI 343
Query: 374 LGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSK 433
LGYDL N DK PE +L+ R PR + +D+ + S
Sbjct: 344 LGYDLRHLNLAVECEDK------PEVVLV-----------RRMPRDDIVWKIDVASESS- 385
Query: 434 GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMAS 477
EY F+ D+E + E+ + R K+ EM +
Sbjct: 386 ---------MEYRLFVEDVENDREMVSGLCTIREKEGIDKEMET 420
>gi|449330246|gb|AGE96506.1| non sense mediated mRNA decay protein 3 [Encephalitozoon cuniculi]
Length = 424
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 240/464 (51%), Gaps = 48/464 (10%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCCKCGIP+ P NMC CL +EV I+ +++++ + C C+ YL PP++W++
Sbjct: 2 ILCCKCGIPIEPRLMNMCDRCLVTEVTISSKVKRNLAVERCRGCERYLHPPKSWMEFSWG 61
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
SKE L F ++R K LN + +V++ F++TEP+SKRI V L V++ +EQ + YV
Sbjct: 62 SKEFLLFLIRRNKTLNGLCIVDSNFVYTEPNSKRIVVALVVRE-----CGVEQPLEMRYV 116
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
++ C C++V+A W + VQ+R HRR F YLE L+LK++ I Q +G
Sbjct: 117 IRNMQCPDCAKVEAK-QFWNSLVQVRHKAGHRRMFIYLEHLVLKNNVYGDTSNIKQRKEG 175
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ R+ AV+ V F+ V PVR + ++L+S D ++ NYK++ SVEI+P+C++DL
Sbjct: 176 LDFYYIERNAAVRMVSFLQSVLPVRVKVSERLISKDVHTSKCNYKFSHSVEIAPLCKDDL 235
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW--RSSFKSLLTSRQ 314
+ + V SLG +G L I K+ I LLD ++ + YW + K L++S+
Sbjct: 236 VVVGKDVRRSLG-IGSLAIVQKIATGIVLLDARLMKSVKITGSFYWNNQDGLKVLMSSKD 294
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS-IRTHLGHLLNPGDYA 373
+Y V+ + GG+ D V+ G FS R HLG+ + D
Sbjct: 295 FTKYTVV---MKCCRRRAGGA----MDGYDLTVTSDGSE---FSEARFHLGN-VEEDDEI 343
Query: 374 LGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSK 433
LGYDL N DK PE +L+ R PR + +D+ + S
Sbjct: 344 LGYDLRHLNLAVECEDK------PEVVLV-----------RRMPRDDIVWKIDVASESS- 385
Query: 434 GRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMAS 477
EY F+ D+E + E+ + R K+ EM +
Sbjct: 386 ---------MEYRLFVEDVENDREMVSGLCTIREKEGIDKEMET 420
>gi|303390779|ref|XP_003073620.1| nonsense-mediated mRNA decay protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302767|gb|ADM12260.1| nonsense-mediated mRNA decay protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 422
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/456 (32%), Positives = 243/456 (53%), Gaps = 52/456 (11%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCCKCGI + P NMC CL +EV I+ +++++++ C C+ YLQPP++W
Sbjct: 2 ILCCKCGILIEPRLMNMCDRCLVTEVTISSKVKRNLVVERCRGCERYLQPPKSWEGFSWG 61
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
SKELL F +K+ K LN + +V++ F++TEP+SKRI V L V + +EQ ++YV
Sbjct: 62 SKELLLFLIKKNKTLNGLCIVDSNFVYTEPNSKRIVVALTVSE-----CGVEQPLEIKYV 116
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
++ C C++V+A W + VQ+R H+R YLE L+LK++A I Q +G
Sbjct: 117 IKNMQCSDCAKVEAK-QFWNSLVQVRHRGRHKRMMIYLEHLVLKNNAYGDTSNIKQRKEG 175
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
+DF++ +R+ A + V F+ V PV+++ ++L+S D ++ NYK+++SVEI+P+C++DL
Sbjct: 176 LDFYYIDRNAASRMVSFLQSVLPVKTKVSERLISKDVHTSKCNYKFSYSVEIAPLCKDDL 235
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW--RSSFKSLLTSRQ 314
+ + ++ SLG +G LV+ K+ SI L D ++ + YW + FK L++S+
Sbjct: 236 VVVGRSLSQSLG-IGSLVLVQKIATSIVLFDVGLMKSVRIAGSFYWSNQDEFKVLMSSKD 294
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS-IRTHLGHLLNPGDYA 373
+Y V+ + + +G V +D ++FS R HLG+ + D
Sbjct: 295 FTKYSVVMRDERRRKGGIGYDLTVTSDG------------SVFSEARFHLGN-VEEDDEI 341
Query: 374 LGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSK 433
LGYDL N +K PE +L++K PR DD
Sbjct: 342 LGYDLRHLNLTVECEEK------PEVVLVRKM-----------PR-----------DDVV 373
Query: 434 GRTD-QEKMNKEYEEFLRDLEENPELRFNISLYRNK 468
+ D ++ EY F+ D+E + E+ + L K
Sbjct: 374 WKIDVPQESQMEYRLFVEDVENDKEMVEGLCLVEEK 409
>gi|401412263|ref|XP_003885579.1| putative NMD3 protein [Neospora caninum Liverpool]
gi|325119998|emb|CBZ55551.1| putative NMD3 protein [Neospora caninum Liverpool]
Length = 721
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 168/261 (64%), Gaps = 4/261 (1%)
Query: 70 WIKAQLESKELLTFCVKRLKNLNRV-RLVNAEFIWTEPHSKRIKVKLKVQKEVLNG-AIL 127
W+ +LES+EL+ C+K+++ L +V ++V+ +++WTEPHS+R+K+KL VQ +VL+G A L
Sbjct: 7 WLACELESRELMAVCLKKVRGLKKVEKIVDCQWLWTEPHSRRVKMKLTVQSDVLDGRAGL 66
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+QS ++E V Q CD C + W A VQ+RQH H+RTF +LEQL+LKH AAR
Sbjct: 67 QQSVIIEGVIQSTQCDECKKSYTPHAGWTAMVQVRQHAEHKRTFLFLEQLVLKHRLAARL 126
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+ + + G+DF F +R A+ F +F P SR KQL+SHD SN + +KYT SV
Sbjct: 127 LNVVEKSDGLDFHFPSRQAALHFADFCQSRFPAVSRQAKQLISHDASSNIYYHKYTISVT 186
Query: 248 ISPICREDLICLPPKVAVS-LGNLGPLVICMKVTNS-IALLDPFTLRHCFLDADQYWRSS 305
++P+C+ DL+ + K A S LG L +C +V + I L DPF+ + + ++YW+S
Sbjct: 187 LAPVCKADLVYIHRKQAQSQLGGFPNLSLCTRVAGAGIQLTDPFSGKVVNVSPEKYWKSP 246
Query: 306 FKSLLTSRQLVEYIVLDVEVV 326
F+SL T + L ++VLDV V
Sbjct: 247 FQSLCTRKHLSSFLVLDVNPV 267
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 341 DAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSAN---NNDMELDKYKG 393
+ ++ R SD G +D +HLG L+ GD+ GYDL S N D EL++ G
Sbjct: 384 EVELVRASDVGVSDRRIVTHSHLGRFLSAGDWVKGYDLRSINLPGAADDELERDAG 439
>gi|429964781|gb|ELA46779.1| hypothetical protein VCUG_01738 [Vavraia culicis 'floridensis']
Length = 444
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 243/458 (53%), Gaps = 51/458 (11%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
S+ CCKCGI + PN NMC C +E+DITEG++ + C +C+ YL PP+ WI +
Sbjct: 15 SISCCKCGISILPNCLNMCTRCRSAEIDITEGIKLSYAVESCKKCNRYLLPPKKWIVLEN 74
Query: 76 ESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
E+ +LL+F + R K + + +V++ F TE HS+RI ++L++ K+ L I V +
Sbjct: 75 ET-DLLSFLLLRHKEIRNLNIVDSGFKKTEEHSRRIILELEIAKDELRCNI-----DVVF 128
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
++ C C +++A W + VQ+RQ +RTF YLEQ ILKH + I +
Sbjct: 129 KIRNKQCPDCDKMEA-KQYWTSIVQIRQRSKSKRTFLYLEQSILKHKMYKKCTNIKERKD 187
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
GIDF++ +R A + V F+ + +L++ D +N YK+++SVEI P+C++D
Sbjct: 188 GIDFYYLDRHSACEMVNFLEGAIGTKLLVSNRLMTEDRNNNKMKYKFSYSVEIFPLCKDD 247
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW--RSSFKSLLTSR 313
L+ L + A N+ L++ +KV+ I L+DP + + + +W R F ++TS+
Sbjct: 248 LVVLSEEFAKK-RNISRLMLVLKVSRRITLVDPVSSKTIDITNKCFWSNRECFNVVMTSK 306
Query: 314 QLVEYIVLDVE------VVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
L + V +VE + E + G K V D V R + ND ++HLG +L
Sbjct: 307 DLTLFRVTEVERDYRQAFGTVETDKWGFKSV--DCFVTREYN---NDV--HCKSHLGSIL 359
Query: 368 NPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
N D GYDL + N + ++ D +K IL++K+Y K+L++
Sbjct: 360 NEDDEIYGYDLGNCNLHFIDRDLFKA------ILVRKNY----------------KNLNL 397
Query: 428 EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLY 465
V+ + R ++EYE FL D+ E+ +L+ N+ LY
Sbjct: 398 SVNTERER------DREYEFFLEDVFEDDDLKKNVDLY 429
>gi|74226349|dbj|BAE25334.1| unnamed protein product [Mus musculus]
Length = 200
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 143/192 (74%), Gaps = 2/192 (1%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
++ + G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP
Sbjct: 7 SIEHSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPA 66
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W++ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL
Sbjct: 67 SWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAIL 126
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+
Sbjct: 127 QQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNT 185
Query: 188 IRITQMDQGIDF 199
+RI ++ F
Sbjct: 186 LRIKEIHGEFKF 197
>gi|440491349|gb|ELQ74007.1| NMD protein affecting ribosome stability and mRNA decay
[Trachipleistophora hominis]
Length = 444
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 241/456 (52%), Gaps = 47/456 (10%)
Query: 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQL 75
S+ CCKCGI + PN NMC C +E+DIT+G++ + +C +C+ YL PP+ W+ +
Sbjct: 15 SISCCKCGISILPNCLNMCGRCRSTEIDITQGVKLCYTVENCKKCNRYLLPPKKWLVLEN 74
Query: 76 ESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
E+ +LL+F + R K + + +VN+ F TE HS+RI ++L++ K+ L I V +
Sbjct: 75 ET-DLLSFLLLRYKEIRNLNIVNSGFKKTEEHSRRIVLELEIAKDDLKCNI-----DVVF 128
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
++ C C +++A W + VQ+RQ +RTF YLEQ ILKH R I +
Sbjct: 129 KIRNKQCLDCDKMEA-KQYWTSIVQIRQRSKSKRTFLYLEQSILKHKMYKRCTNIKERKD 187
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
GIDF++ ++ A + V F+ + +L++ D +N YK+++SVEI P+C++D
Sbjct: 188 GIDFYYLDKHSAYEMVNFLESTIGTKLLVSNRLMTEDRNNNKMKYKFSYSVEIYPLCKDD 247
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW--RSSFKSLLTSR 313
L+ L + A N+G LV+ +KV+ I L+DP + R + +W R F ++TS+
Sbjct: 248 LVVLSEEFAKK-RNVGRLVLVLKVSRKITLVDPISSRTIDVTNKCFWSNRECFTVVMTSK 306
Query: 314 QLVEYIVLDVEVVSSEVNVGGSK----YVLADAQVARVSDFGKNDTIFSIRTHLGHLLNP 369
L + V ++E ++ K + D V R + ND ++HLG +L
Sbjct: 307 DLTLFQVTEIERDYQKMYGTAEKTESCFKSVDCFVRREYN---ND--MHCKSHLGSILRE 361
Query: 370 GDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEV 429
D GYDL + N + ++ D +K IL++K+Y K L++ +
Sbjct: 362 DDEVYGYDLGNCNLHFIDRDLFKA------ILVRKNY----------------KDLNLSI 399
Query: 430 DDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLY 465
+ K + ++EYE FL D+ E+ +L+ N+ LY
Sbjct: 400 NTEK------EHDREYEFFLEDVLEDDDLKKNVDLY 429
>gi|300176472|emb|CBK23783.2| unnamed protein product [Blastocystis hominis]
Length = 454
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 206/388 (53%), Gaps = 19/388 (4%)
Query: 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLN 92
MC CL + + + I+ CPEC+ L R W+ + ES E L +K + L
Sbjct: 1 MCTKCLMMNTSVGDHIDSEATITFCPECNKILTGSRQWVFVERESVEELGIMLKMIHGLK 60
Query: 93 RVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANP 152
+ LV+A+F+WTEPHS+RI ++L +++E+ N + + + Q +C C R N
Sbjct: 61 KNELVDAKFVWTEPHSRRIVIELSIKQELENRTTVIGKKRITFTQTQRICPDCQRNVTNF 120
Query: 153 DQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVE 212
W A VQ+RQ H++T F+LEQ ++K+ ++ + + G+DF+F A FVE
Sbjct: 121 S-WEAVVQIRQRAEHKKTLFWLEQELIKNHRYEDSLSLEIVSGGLDFYFYKLKEAQSFVE 179
Query: 213 FVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGP 272
+V + ++ KQL D K++ Y+++F +E+ +C+ DL+ LP A L P
Sbjct: 180 YVKSIVATSQKYSKQLHGTDQKNHVAWYRHSFYLEVPSVCKNDLVILPRSCACDLA--VP 237
Query: 273 LVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEV------- 325
V+C ++T++++ + P + + + Y + F LL S L E+ VLDV++
Sbjct: 238 FVLCTRITSNLSFVQPTSGKVVTVSGTSYSKHPFNPLLNSNHLKEFTVLDVQLDHPSQRT 297
Query: 326 ---VSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSAN 382
++ E N+ V+ D +V R DFG ++ +R+HL +L PG +GYDL +
Sbjct: 298 NREITEENNI-----VMGDVEVIRSDDFGVSNETIIVRSHLCGVLEPGMLVMGYDLRRSA 352
Query: 383 NNDMELDKYKGLVLPETILIKKSYEEKR 410
N+ E +KY L LP+ +L+ ++ + +R
Sbjct: 353 LNNDEYEKYADL-LPDVVLVCRAKDPER 379
>gi|413951252|gb|AFW83901.1| hypothetical protein ZEAMMB73_498519 [Zea mays]
Length = 452
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 219/395 (55%), Gaps = 28/395 (7%)
Query: 38 LRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFC----VKRLKNLNR 93
LR DIT+GL +H + +CP C Y QPP +W++ + S T V R+ +L+R
Sbjct: 15 LRPRADITKGLPRHDAVLYCPSCWAYRQPPASWVRREPRSWMSTTPGTANDVARI-HLDR 73
Query: 94 VR---------LVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDS 144
VR + A T +R + L++++ G Q++VVE D +CD+
Sbjct: 74 VRRHIAGLGLTIAAARSFSTTACPRRFYLHLRLRRGHEAG-TEPQAHVVELTSHDRLCDA 132
Query: 145 CSRVQANPDQWVAAVQLRQHVTH----RRTFFYLEQLILKHDAAARAIRITQMDQG---I 197
CSR QA+PD+W A VQ+RQ + RRT ++ L++ + +R+ D G +
Sbjct: 133 CSRSQADPDRWPAVVQVRQRASTSSSCRRTLNHVMSLLVCYRGNDSLLRV-DWDAGAGVL 191
Query: 198 DFFFGNRSHAVKFVEFVGKVAPVRS-RHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
D +R+HA +FV FV VAP R ++LVS D + + + + SV+I P+C +DL
Sbjct: 192 DVHVVSRAHAARFVRFVSTVAPARVVGTARRLVSRDGEGSPYRLHF-ISVDICPVCEDDL 250
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLV 316
+ L + + +LG LGPLV+C+KVT+S+ALLD +R + + R + LL +LV
Sbjct: 251 VLLHAEASRALGRLGPLVLCIKVTSSLALLDTGNMRVVVVGVEACERFRIQPLLDRGRLV 310
Query: 317 EYIVLDVEV-VSSEVNVGGSKYVLADAQVARVSDFGKND-TIFSIRTHLGHLLNPGDYAL 374
EY+VL V+ S V G+ ++++ AQV R SD GK D + +++THLG+ L PG +AL
Sbjct: 311 EYVVLGVQHDPSGHVAALGASFMMSWAQVVRSSDVGKKDAAVITVKTHLGYDLEPGCHAL 370
Query: 375 GYDLYSANNNDMELDKY-KGLVLPETILIKKSYEE 408
GYDL + L+KY K LP +L ++ Y++
Sbjct: 371 GYDLSGDDVFGHGLEKYGKRHTLPAAVLTRRYYDD 405
>gi|237843321|ref|XP_002370958.1| NMD3 protein [Toxoplasma gondii ME49]
gi|211968622|gb|EEB03818.1| NMD3 protein [Toxoplasma gondii ME49]
gi|221502340|gb|EEE28073.1| NMD3 protein, putative [Toxoplasma gondii VEG]
Length = 721
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/253 (41%), Positives = 162/253 (64%), Gaps = 4/253 (1%)
Query: 78 KELLTFCVKRLKNLNRV-RLVNAEFIWTEPHSKRIKVKLKVQKEVLNG-AILEQSYVVEY 135
+EL+ C+K+++ L +V ++V+ +++WTEPHS+R+K+KL VQ +VL+G A L+QS ++E
Sbjct: 12 RELMAVCLKKVRGLKKVEKIVDCQWLWTEPHSRRVKMKLTVQSDVLDGRAGLQQSLIIEG 71
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
V Q+ CD C + W A VQ+RQH H+RTF +LEQL+LKH AAR + + +
Sbjct: 72 VIQNTQCDECKKSYTPHAGWTAMVQVRQHAEHKRTFLFLEQLVLKHRLAARLLNVVEKSD 131
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
G+DF F +R A+ F +F P SR KQL+SHD SN + +KYT SV ++P+C++D
Sbjct: 132 GLDFHFPSRQAALHFADFCQSRFPSVSRQAKQLISHDASSNIYYHKYTISVTLAPVCKDD 191
Query: 256 LICLPPKVA-VSLGNLGPLVICMKVTNS-IALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
L+ + K A LG L +C +V + I L DPF+ + + ++YW+S F+ L T +
Sbjct: 192 LVYIHRKQAQAQLGGFTNLSLCTRVAGAGIQLTDPFSGKVLNVSPEKYWKSPFQPLCTRK 251
Query: 314 QLVEYIVLDVEVV 326
L ++VLDV V
Sbjct: 252 HLSSFLVLDVNPV 264
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 341 DAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSAN-----NNDMELD 389
+ ++AR SD G +D THLG L+ GD+ GYDL S N +N++E D
Sbjct: 384 EVELARASDVGVSDRRVVTYTHLGRFLSAGDWVKGYDLRSINLPGAADNELERD 437
>gi|429962045|gb|ELA41589.1| hypothetical protein VICG_01337 [Vittaforma corneae ATCC 50505]
Length = 415
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 227/453 (50%), Gaps = 54/453 (11%)
Query: 19 CCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESK 78
CCKCGI + PN ++C CL +E D+T ++ + I C C Y P + W S+
Sbjct: 4 CCKCGIEIEPNMRSICFRCLNNETDVTRSIKTSMAIETCRGCKRYFFPSKGWKVLSWGSQ 63
Query: 79 ELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQ 138
+LL F + R K+L + +V++ F++TE HS R+ V++KV ++ + EQS ++ Y
Sbjct: 64 DLLIFLLGRNKSLKGLNIVDSNFVYTEEHSMRMIVEIKVAQDGI-----EQSCMLRYNVT 118
Query: 139 DHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGID 198
+ C +C R +A W A VQLRQ H+RTF Y+EQLILKH A A I + GID
Sbjct: 119 NMQCTNCMRTEA-KQYWKALVQLRQRPHHKRTFLYIEQLILKHKAHLPASNIKERKDGID 177
Query: 199 FFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLIC 258
F++ +R AV V+F+ R + +L+S D +N N K+TFSVEI P C++DL+
Sbjct: 178 FYYLDRQDAVHMVDFLSSYCGTRVINSSRLISEDESNNTANKKFTFSVEILPFCKDDLVY 237
Query: 259 LPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRS--SFKSLLTSRQLV 316
L P + LGN + +V +++ DP T + L + QY+ + FK L+ S
Sbjct: 238 LGPGNMLGLGNFA---LVSRVGSTVTFFDPVTQKSNKLYSKQYYSNEDKFKILMRSCNFK 294
Query: 317 EYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGY 376
+Y V+ + +E L +A + + F + THL + D GY
Sbjct: 295 KYRVVYCRPLGNE---------LYEATLT-----ADDLKFFDVTTHLK--IKDDDTVAGY 338
Query: 377 DLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRT 436
+L +N + D + L IL+ + + + R+W LKS + EVDD
Sbjct: 339 NLEGSN---LATD----IDLGTDILLVRVFNNSK-------RNWTLKS-EKEVDD----- 378
Query: 437 DQEKMNKEYEEFLRDLEENPELRFNISLYRNKD 469
EY F+ D+ + E+ + ++ +KD
Sbjct: 379 -------EYMYFIDDISNDKEMLNRVCVFDSKD 404
>gi|402470838|gb|EJW04876.1| hypothetical protein EDEG_00946 [Edhazardia aedis USNM 41457]
Length = 456
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 250/459 (54%), Gaps = 54/459 (11%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
++CCKCGI + P NMC C+ +E+DIT ++K+ I+ HC CD Y PP+ W +
Sbjct: 34 IICCKCGIDIEPRLMNMCDICISTEIDITSSIKKNDIVQHCRGCDRYFTPPKAWHSCEWH 93
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
SKELL +K+ K+L + ++++++F++TE HSK+I +K+ +QK+ + + + Y
Sbjct: 94 SKELLVLLLKKNKSLLKFKILDSDFLYTEEHSKQIHIKVLLQKDNITKEVQ-----INYK 148
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
++ C +C +++A W + VQ+RQ V H+RT YLEQ++LK +A I + G
Sbjct: 149 IRNFQCPACQKIEA-KQFWSSIVQVRQRVAHKRTLLYLEQVLLKSEAYKETTNIKERRDG 207
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
IDF+F +++ A+K V F+ R + ++L+S D KSN YK+++S+E++PIC++D+
Sbjct: 208 IDFYFQSKNPALKLVSFIKSRFICRVKISERLLSEDKKSNTSKYKFSYSIELAPICKDDV 267
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW--RSSFKSLLTSRQ 314
I + ++A G + + KV ++I L+DP T + +D YW F+ L++SR
Sbjct: 268 IKVSERIANKYG-INQINTVTKVNSNIKLIDPITNKLTEIDNRNYWGYLDEFEILMSSRS 326
Query: 315 LVEYIV---LDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
L ++ V +D V S+ N+ + YV D N+ + +THL + + D
Sbjct: 327 LKKFKVVEIIDTCKVDSDQNILTNLYVSCD-----------NNINYHCKTHLKN-IKEND 374
Query: 372 YALGYDL-YSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
LGY+ +S +D++ + +++K + K+ +
Sbjct: 375 IVLGYNFDHSWKQDDVDF---------KVFIVRKEVQRKK-------------------N 406
Query: 431 DSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD 469
+ K T +K + EY+ F++D+ + EL+ +I+L+ D
Sbjct: 407 NLKIHTKHKK-DDEYDLFMQDIIMDDELKEDITLFDQND 444
>gi|388508834|gb|AFK42483.1| unknown [Medicago truncatula]
Length = 342
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 181/368 (49%), Gaps = 61/368 (16%)
Query: 155 WVAAVQLRQ-HVTHRRTFFYLEQL-ILKHDAAARAIR--ITQMDQGIDFFFGNRSHAVKF 210
W + V++RQ HV+ RT F+LEQ+ ++ + + I +DQG F F S A F
Sbjct: 5 WRSVVKVRQQHVSQLRTVFHLEQISVMTNLGILDDVEKIIYDVDQGFSFCFNIISCAWYF 64
Query: 211 VEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLG-N 269
+G + PV+S + P++ +Y FSVEI PIC DLI LPP V SLG N
Sbjct: 65 ATLIGDIVPVKSNWAMII----PRTE----RYLFSVEIVPICCGDLIFLPPNVVASLGPN 116
Query: 270 LGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV------ 323
+GP+VIC +V + LLDPFTL HCFLDA QYW++ F QLVEY+VLD+
Sbjct: 117 IGPIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDIVLLQDN 176
Query: 324 ----------------EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
E + KY LADA VARV D G NDT F IRTHLG +L
Sbjct: 177 QQDNQDEEEEVVEENREKKYAAAAAAAKKYRLADAVVARVKDTGNNDTTFQIRTHLGRIL 236
Query: 368 NPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKK-SYEEKRLRKRSKPRSWKLKSLD 426
PGD+ALGYDL D LP ILI K SY E R + W+
Sbjct: 237 KPGDHALGYDLSGGEGG---ADTNTNNNLPAAILISKISYAEVNGRVVAVKDKWE----- 288
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNIS-LYRNKDYQPSEMASVTDGEDVP 485
+Y+ F DL+++P+L F I+ YRN + + D P
Sbjct: 289 ----------------SDYQLFFNDLQQDPQLLFKITAAYRNPNNHYTYGGPFVDPPTRP 332
Query: 486 SVPLDELL 493
PL++LL
Sbjct: 333 FDPLEDLL 340
>gi|357493955|ref|XP_003617266.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355518601|gb|AET00225.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 342
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 181/368 (49%), Gaps = 61/368 (16%)
Query: 155 WVAAVQLRQ-HVTHRRTFFYLEQL-ILKHDAAARAIR--ITQMDQGIDFFFGNRSHAVKF 210
W + V++RQ HV+ RT F+LEQ+ ++ + + I +DQG F F S A F
Sbjct: 5 WRSVVKVRQQHVSQLRTVFHLEQISVMTNLGILDDVEKIIYDVDQGFSFCFNIISCAWYF 64
Query: 211 VEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLG-N 269
+G + PV+S + P++ +Y FSVEI PIC DLI LPP V SLG N
Sbjct: 65 ATLIGDIVPVKSNWAMII----PRTE----RYLFSVEIVPICCGDLIFLPPNVVASLGPN 116
Query: 270 LGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV------ 323
+GP+VIC +V + LLDPFTL HCFLDA QYW++ F QLVEY+VLD+
Sbjct: 117 IGPIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDIVLLQDN 176
Query: 324 ----------------EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
E + KY LADA VARV D G NDT F IRTHLG +L
Sbjct: 177 QQDNQDEEEEVVEENREKKYAAAAAAAKKYRLADAVVARVKDTGNNDTTFQIRTHLGRIL 236
Query: 368 NPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKK-SYEEKRLRKRSKPRSWKLKSLD 426
PGD+ALGYDL D LP ILI K SY E R + W+
Sbjct: 237 KPGDHALGYDLSGGEGG---ADTNTNNNLPAAILISKISYAEVNGRVVAVKDKWE----- 288
Query: 427 MEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNIS-LYRNKDYQPSEMASVTDGEDVP 485
+Y+ F DL+++P+L F I+ YRN + + D P
Sbjct: 289 ----------------SDYQLFFNDLQQDPQLLFKITAAYRNPNNHYTYDGPFVDPPTRP 332
Query: 486 SVPLDELL 493
PL++LL
Sbjct: 333 FDPLEDLL 340
>gi|350591688|ref|XP_003483313.1| PREDICTED: 60S ribosomal export protein NMD3-like [Sus scrofa]
Length = 210
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 138/200 (69%), Gaps = 7/200 (3%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
++ +T G +LCC CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP
Sbjct: 7 SINRTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPG 66
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
TWI+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL
Sbjct: 67 TWIQCALESRELLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAIL 126
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A VQ+RQ + F ++L A
Sbjct: 127 QQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVVQVRQ-----KHFPPASPVLLNKIDGAAF 180
Query: 188 IRITQMDQGIDFFFGNRSHA 207
+++ + Q + FF H+
Sbjct: 181 VKMQAVFQSLPCFFLPSDHS 200
>gi|357494227|ref|XP_003617402.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355518737|gb|AET00361.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 341
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 181/367 (49%), Gaps = 60/367 (16%)
Query: 155 WVAAVQLRQ-HVTHRRTFFYLEQLILKHDAAA--RAIRIT-QMDQGIDFFFGNRSHAVKF 210
W + V++RQ HV+ RT F+LEQ+ + + A R RI +DQG F F S A F
Sbjct: 5 WRSVVKVRQQHVSQLRTVFHLEQISVMTNLAIVDRVERIIYDVDQGFSFCFNITSCAWHF 64
Query: 211 VEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNL 270
+G++ PV+S + P++ +Y FSVEI PIC DLI LPP V SLG
Sbjct: 65 ARLIGEIVPVKSAWAMII----PRTE----RYLFSVEIVPICCGDLIFLPPNVVASLG-- 114
Query: 271 GPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSE- 329
+VIC +V + LLDPFTL HCFLDA QYW++ F QLVEY+VLD+ ++
Sbjct: 115 PNIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDIVLLQDNQ 174
Query: 330 ---------------------VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
KY LADA VARV D G NDT F IRTHLG +L
Sbjct: 175 QDNQDEEEEVVEENKEKKDAAAAAAAKKYRLADAVVARVKDTGNNDTTFQIRTHLGRILK 234
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKK-SYEEKRLRKRSKPRSWKLKSLDM 427
PGD+ALGYDL S + D LP ILI K SY E R + W+
Sbjct: 235 PGDHALGYDL-SGGVGEGGADTNTNNNLPAAILISKISYAEVNGRVVAVKDKWE------ 287
Query: 428 EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISL-YRNKDYQPSEMASVTDGEDVPS 486
+Y+ F DL+++P+L F I+ YRN + + D P
Sbjct: 288 ---------------SDYQLFFNDLQQDPQLLFKITAPYRNPNNHYTYDGPFVDPPIRPF 332
Query: 487 VPLDELL 493
PL++LL
Sbjct: 333 DPLEDLL 339
>gi|357494087|ref|XP_003617332.1| Glycogen synthase kinase 3 beta [Medicago truncatula]
gi|355518667|gb|AET00291.1| Glycogen synthase kinase 3 beta [Medicago truncatula]
Length = 393
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 182/357 (50%), Gaps = 53/357 (14%)
Query: 162 RQHVTHRRTFFYLEQLILKH--DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAP 219
++HV H RTFF +EQ+I+ + + + RI + DQG F+F + HA VE++ + P
Sbjct: 23 QEHVCHLRTFFDVEQIIVMNCFEPLSGVKRIERNDQGFTFYFNSLDHASCLVEYIRDIVP 82
Query: 220 VRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKV 279
+ H Q+ S Y F VEI PIC DLI LPP VA S G +VIC +V
Sbjct: 83 SKI-HCHQIPSE--------CSYNFFVEIVPICCGDLIFLPPDVAASFG--ANIVICTRV 131
Query: 280 TNSIA-LLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV------EVVSSEVNV 332
I LLDPFTL L AD YW + F QLV+Y VL++ E ++++ +
Sbjct: 132 AKKITTLLDPFTLTAFSLKADHYWNAPFTHSFNRTQLVKYFVLNIVLQEDGEEIAADSST 191
Query: 333 GGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK 392
KY LADA VARV +FG NDT F IRTHLGH+L GDYALGYDL N ++
Sbjct: 192 AAKKYRLADAVVARVENFGNNDTTFQIRTHLGHILKSGDYALGYDLSGGGANTNIIN--- 248
Query: 393 GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDL 452
G LP ILI K+ DD +K +Y+ FL DL
Sbjct: 249 GGYLPAAILIAKT----------------------NCDDGS-VVIPDKWQSDYQLFLEDL 285
Query: 453 EENPELRFN-ISLYRNK-DYQPSEMASVTDGEDV-----PSVPLDELLADLDLKSDD 502
+ P L FN ++YRN+ ++ + + SV ++ PS PL+ L +L + + D
Sbjct: 286 RQGPHLTFNAAAMYRNQPNHNKTNLISVKAAKEAQASARPSCPLETLTPELLVGATD 342
>gi|388510786|gb|AFK43459.1| unknown [Medicago truncatula]
Length = 153
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/154 (68%), Positives = 124/154 (80%), Gaps = 8/154 (5%)
Query: 356 IFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRS 415
+FSIRTHLGHLL PGD ALGYDLY+AN+NDMELD+YKG + PE +LIKKSY EKR
Sbjct: 1 MFSIRTHLGHLLKPGDNALGYDLYAANSNDMELDRYKGNI-PEVVLIKKSYPEKR----- 54
Query: 416 KPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEM 475
K RS+KLK + ME DD K + +++K + EYE FL++LEENPELRFNISLY+NKDYQPSE+
Sbjct: 55 KTRSFKLKRIPMEADD-KIKVNEDKRSAEYELFLKELEENPELRFNISLYQNKDYQPSEV 113
Query: 476 ASVTDGEDVPSVPLDELLADL-DLKSDDGEGDDS 508
ASVTDGE+ PSVP DELL L DL +GEGDD
Sbjct: 114 ASVTDGEEAPSVPWDELLTGLEDLDLSEGEGDDG 147
>gi|149628335|ref|XP_001521554.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Ornithorhynchus anatinus]
Length = 158
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/158 (56%), Positives = 121/158 (76%), Gaps = 2/158 (1%)
Query: 63 YLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
YLQPP TW+ LES+ELLT C+K++K +L++VRL++A F+WTEPHSKR+KVKL +QKEV
Sbjct: 1 YLQPPGTWVPCALESRELLTLCLKKIKASLSKVRLIDAGFVWTEPHSKRLKVKLTIQKEV 60
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
+NGAIL+Q +VVEYV Q MCD C RV+A D W A VQ+RQ H++TFFYLEQLILKH
Sbjct: 61 MNGAILQQVFVVEYVVQSQMCDDCHRVEAK-DFWKAVVQVRQKTLHKKTFFYLEQLILKH 119
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAP 219
++RI ++ G+DF++G++ HA K V+F+ P
Sbjct: 120 RVHQNSLRIKEIHDGLDFYYGSKQHAQKMVDFLQGTVP 157
>gi|159486254|ref|XP_001701157.1| hypothetical protein CHLREDRAFT_194349 [Chlamydomonas reinhardtii]
gi|158271960|gb|EDO97769.1| predicted protein [Chlamydomonas reinhardtii]
Length = 337
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 187/373 (50%), Gaps = 92/373 (24%)
Query: 140 HMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDF 199
+MC +C R Q + + + ++ V F + K I++ + +GIDF
Sbjct: 35 NMCVNCIRSQVDITEGI-----QKQVKLVDAGFIWTEPHSKRIKVKLTIQVRDIHEGIDF 89
Query: 200 FFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICL 259
F+ NRSHA KF++F+ V P+R R DKQLVSHD +N +NYK+TFSVEI P+C++DL+ L
Sbjct: 90 FYANRSHAQKFIDFLQSVVPIRFRADKQLVSHDTHNNTYNYKFTFSVEIVPLCKDDLVFL 149
Query: 260 PPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYI 319
PPK+A S GNLGP V+ ++TN I+L+DP +R +
Sbjct: 150 PPKMAASAGNLGPFVLVSRITNQISLVDPANMRTHTM----------------------- 186
Query: 320 VLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLY 379
DA +ARVSDFGKNDT+F +RTHLG++L+PGD LGYDL
Sbjct: 187 ---------------------DAPIARVSDFGKNDTVFYVRTHLGNILHPGDTVLGYDLT 225
Query: 380 SANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQE 439
+A ++ D + + GR +
Sbjct: 226 TAQLTGIDYDNHMS--------------------------------------AGGRVPEI 247
Query: 440 KMNKEYEEFLRDLEENPELRFNISLYRN-KDYQPSEMASVTDGEDVPSVPLDELLADLD- 497
+ + E F+++LEE+ ++R I++Y++ + E D ED+P +PL+ELL DL+
Sbjct: 248 ILEADRERFMQELEEDADMRARINIYKDAQGLAQGEDEEDDDDEDLPQIPLEELLDDLEG 307
Query: 498 --LKSD-DGEGDD 507
L D DGE +D
Sbjct: 308 LALDPDADGEEED 320
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 77/167 (46%), Gaps = 48/167 (28%)
Query: 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67
F QT G VLCC CG + PN +NMCV C+RS+VDITEG+QK
Sbjct: 11 FQPQQTQGYVLCCLCGTNILPNPSNMCVNCIRSQVDITEGIQK----------------- 53
Query: 68 RTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+V+LV+A FIWTEPHSKRIKVKL +Q ++ I
Sbjct: 54 -------------------------QVKLVDAGFIWTEPHSKRIKVKLTIQVRDIHEGI- 87
Query: 128 EQSYVVEYVQQDHMCDSCSRVQA-NPDQWVAAVQLRQHVTHRRTFFY 173
Y + H +Q+ P ++ A QL H TH T+ Y
Sbjct: 88 ----DFFYANRSHAQKFIDFLQSVVPIRFRADKQLVSHDTHNNTYNY 130
>gi|425777906|gb|EKV16058.1| Nonsense-mediated mRNA decay protein 3 [Penicillium digitatum Pd1]
gi|425779975|gb|EKV17998.1| Nonsense-mediated mRNA decay protein 3 [Penicillium digitatum
PHI26]
Length = 293
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 165/292 (56%), Gaps = 33/292 (11%)
Query: 239 NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDA 298
NYK+ FSVEI PIC++DL+ LP K+A SL ++ PL IC +V SI LLDP TLR L
Sbjct: 9 NYKFNFSVEIIPICKDDLVALPIKLARSLSDISPLAICNRVGTSINLLDPCTLRTTDLPT 68
Query: 299 DQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
YWR F +L + +L E+IVLD+E +Y+L++A VAR SD G ND +
Sbjct: 69 STYWRQPFPNLADTTELREFIVLDIESTGH----SNGRYLLSEATVARASDLGSNDITYF 124
Query: 359 IRTHLGHLLNPGDYALGYDLYSAN-NND----MELDKYKGLVLPETILIKKSYEEKRLRK 413
RTHLG +L+ GD LGY L NND +E +P+ +LIKK Y K
Sbjct: 125 TRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRS---K 181
Query: 414 RSKPRSWKLKSLDMEVDD----------SKGRTDQE--KMNKEYEEFLRDLEENPELRFN 461
+SK RSW+LK + E ++ + R +QE +M ++YE FLRD+EE+ ELR
Sbjct: 182 KSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQT 241
Query: 462 ISLYRNKDYQ--------PSEMASVTDGEDVPSVPLDELLADLD-LKSDDGE 504
+ LY+N+ YQ + DG+ +P + +DELL D D L +D E
Sbjct: 242 LDLYKNRQYQVRADQMDEDGDDDMDEDGQALPKINMDELLDDFDELNMEDNE 293
>gi|443723709|gb|ELU12007.1| hypothetical protein CAPTEDRAFT_211705, partial [Capitella teleta]
Length = 149
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 116/147 (78%), Gaps = 2/147 (1%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC+CG + PN ANMCVACLR++VDI+EG+ K ++ C +C+ YLQPP W+KA LES
Sbjct: 3 LCCQCGTQIEPNPANMCVACLRAQVDISEGIPKQAVLHFCRQCERYLQPPSCWLKAALES 62
Query: 78 KELLTFCVKRLKNLNR-VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
+ELL C+K++K +N+ VRLV+A FIWTEPHSKR+KVK+ +QKEV+NGA+L+Q ++VE+V
Sbjct: 63 RELLAVCLKKVKGINKEVRLVDAGFIWTEPHSKRLKVKMTIQKEVMNGAVLQQVFIVEFV 122
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQ 163
+ MC+ C RV+A D W A VQ+RQ
Sbjct: 123 VHNQMCEDCHRVEAK-DYWRACVQIRQ 148
>gi|26330198|dbj|BAC28829.1| unnamed protein product [Mus musculus]
Length = 263
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 163/273 (59%), Gaps = 18/273 (6%)
Query: 243 TFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW 302
TFSVEI PIC+++++CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + +W
Sbjct: 1 TFSVEIVPICKDNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFW 60
Query: 303 RSSFKSLLTSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIF 357
F SL +QL E+IV++ V S+ V K+ L + + + S+ + F
Sbjct: 61 SHPFNSLCHPKQLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNTDKQYF 120
Query: 358 SIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKP 417
RTHLGHLLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR +
Sbjct: 121 C-RTHLGHLLNPGDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKSYDRT---KRQRR 176
Query: 418 RSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMAS 477
R+WKLK L D TD E ++Y++FL DLEE+ +R ++++YR+ P E S
Sbjct: 177 RNWKLKEL--ARDRENMDTDDE---RQYQDFLEDLEEDEAIRKHVNIYRDATI-PVE--S 228
Query: 478 VTDGEDVPSVPLDELLADLDLKSD-DGEGDDSM 509
TD E P + L E+L DL + D GE SM
Sbjct: 229 DTDDEGAPRISLAEMLEDLHISQDATGEEGASM 261
>gi|300175447|emb|CBK20758.2| unnamed protein product [Blastocystis hominis]
Length = 434
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 136/209 (65%), Gaps = 10/209 (4%)
Query: 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLN 92
MC+ C+RS+VDITEG+Q+ V++ C C+ YL+PP W A ESKELL C+K+++ L
Sbjct: 1 MCINCIRSKVDITEGIQRQVVLFQCRGCERYLRPP--WTAAPPESKELLALCLKKIRGLK 58
Query: 93 RVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSC---SRVQ 149
+V+LV+AEF+WTEPHS+RIKV + +QKEV N +L+QS+VV ++ + C+ C S
Sbjct: 59 QVKLVDAEFVWTEPHSRRIKVNVTIQKEVFN-VVLQQSFVVAFIIEAKTCEDCIMDSIQH 117
Query: 150 ANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVK 209
+N A VQLRQ V H+RTFF+LEQ I+K + RA I G+DF F RS A
Sbjct: 118 SN----RAVVQLRQKVEHKRTFFFLEQQIIKANMHRRAALIESQPDGLDFNFPERSDARS 173
Query: 210 FVEFVGKVAPVRSRHDKQLVSHDPKSNNF 238
F+ ++ V PV +QL+S D SN +
Sbjct: 174 FILWLKSVVPVNVGTARQLLSQDFSSNAY 202
>gi|68075207|ref|XP_679520.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500287|emb|CAH95620.1| conserved hypothetical protein [Plasmodium berghei]
Length = 731
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 182/318 (57%), Gaps = 6/318 (1%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITE-GLQKHV-IISHCPECDCYLQPPRTWIKAQ 74
+ C CG + N + MC CL ++ + K +I +C EC YL W+ +
Sbjct: 200 IQCILCGDNIIANNSKMCNNCLLQNIESNSMNINKDTYLIYYCRECKRYLHNK--WVYCE 257
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LESKELL C+K++ L ++++++++F++TEPHSKRIK+ L VQ+E++N I E +++
Sbjct: 258 LESKELLALCLKKVTKLKKLKILDSKFLYTEPHSKRIKIHLTVQEELINNFISEMEFILH 317
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
+V + CD C + + P + V +RQ V H++T +LE L+LK I I
Sbjct: 318 FVIKYTQCDDCKK-KYTPYTYNTCVSVRQKVDHKKTLLFLESLLLKSQVNENIINIVSNP 376
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DF F +R+ A+KF +F+ + + K L++HD +N +NY Y+FS++I PIC+
Sbjct: 377 DGLDFHFLSRTDALKFCDFILSKTISKCKSSKHLINHDANNNTYNYLYSFSIDICPICKY 436
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPF-TLRHCFLDADQYWRSSFKSLLTSR 313
DLI P ++ G +C+ V+ I L+DPF + + ++ ++Y + F +LL
Sbjct: 437 DLIFFPKDFSIKYGIKSTFYLCLHVSIFIILVDPFGSAKSVYISQEKYNKYPFVALLNKS 496
Query: 314 QLVEYIVLDVEVVSSEVN 331
+++L++E +++E N
Sbjct: 497 DAKSFLILNIEYINTEEN 514
>gi|83032912|ref|XP_729246.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23486501|gb|EAA20811.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 938
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 183/318 (57%), Gaps = 6/318 (1%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITE-GLQKHV-IISHCPECDCYLQPPRTWIKAQ 74
+ C CG + N + MC CL ++ + K +I +C EC YL W+ +
Sbjct: 407 IQCILCGDNILANNSKMCNNCLLQNIESNSMNINKDTYLIYYCRECKRYLH--NKWVYCE 464
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LESKELL C+K++ L ++++++++F++TEPHSKRIK+ + VQ+E++N I E +++
Sbjct: 465 LESKELLALCLKKVTKLKKLKILDSKFLYTEPHSKRIKIHITVQEELINNFISEMEFILH 524
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
+V + CD C + + P + V +RQ V H++T +LE L+LK I I
Sbjct: 525 FVIKYTQCDDCKK-KYTPYTYNTCVSVRQKVDHKKTLLFLESLLLKSQVNENIINIVSNP 583
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DF F +R+ A+KF +F+ + ++ K L++HD +N +NY Y+FS++I PIC+
Sbjct: 584 DGLDFHFLSRTDALKFCDFILSKTISKCKNSKHLINHDANNNTYNYLYSFSIDICPICKF 643
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPF-TLRHCFLDADQYWRSSFKSLLTSR 313
DLI P ++ G +C+ V+ I L+DPF + + ++ ++Y + F +LL
Sbjct: 644 DLIFFPKDFSIKYGIKSTFYLCLHVSIFIILVDPFGSAKSVYISQEKYNKYPFVALLNKS 703
Query: 314 QLVEYIVLDVEVVSSEVN 331
+++L+VE +++E N
Sbjct: 704 DAKSFLILNVEYINTEEN 721
>gi|269860229|ref|XP_002649837.1| nonsense-mediated mRnA decay protein [Enterocytozoon bieneusi H348]
gi|220066778|gb|EED44250.1| nonsense-mediated mRnA decay protein [Enterocytozoon bieneusi H348]
Length = 409
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 41/365 (11%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+ CC CG+ + PN NMC C+ ++T ++ II C C+ Y PP TW +
Sbjct: 2 IACCNCGLKIIPNNKNMCEMCIIMTSNLTSKIKTSTIIETCRGCNKYFIPPSTWKFFEWG 61
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL FC++R K + ++ +V++ FI+TE HSK++ +++K+ + Q + Y
Sbjct: 62 SQELLIFCLERNKTIKKLNIVDSNFIYTEEHSKKMIIEIKIVE-----CNTTQQIKLNYT 116
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
++ C C R+++ W + VQ+RQH + R+F YLEQLI H A I G
Sbjct: 117 IRNKQCRECMRLES-KQFWNSLVQIRQHPPNPRSFLYLEQLIKIHKAHKSTSNIKDKPDG 175
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
IDF+F N++ A++F +F+ ++ + +L+S D K+N N K TFS + P C++DL
Sbjct: 176 IDFYFFNKNDAIRFTKFIENFYGIKIKESNRLISEDRKNNTANTKTTFSCVLMPFCKDDL 235
Query: 257 ICLPPKVAVSLGNLGPLVICMKVTNSIALL-----DPFTLRHCFLDADQYWRSSFKSLLT 311
V N L I KV +I L+ D T+ + A++ W FK + T
Sbjct: 236 --------VEFNN--TLWIVSKVNCNIELVNIKTGDKRTISAKYYFANEDW---FKIIQT 282
Query: 312 SRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGD 371
++ L++Y V V+S + + ++ N+ IF I+T L ++ GD
Sbjct: 283 TKDLIQYTV----VLSYKSD-----------DFYNITLMDMNEKIFEIQTLLK--VDDGD 325
Query: 372 YALGY 376
LGY
Sbjct: 326 TILGY 330
>gi|357480997|ref|XP_003610784.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355512119|gb|AES93742.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 333
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/376 (34%), Positives = 175/376 (46%), Gaps = 82/376 (21%)
Query: 153 DQWVAAVQLRQ-HVTHRRTFFYLEQL-ILKHDAAARAIRITQ--MDQGIDFFFGNRSHAV 208
+ W A V +RQ HV+ RT F+LEQ+ + H R + +++G+ F+F + S A
Sbjct: 3 EGWRAVVNVRQQHVSELRTLFHLEQVSVWNHLGIVGNFRRIEYNINEGLSFYFNSLSDAA 62
Query: 209 KFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLG 268
+ V + + P + + +K DP Y FSVEI PIC DLI LP +A SLG
Sbjct: 63 EVVNLIVDILPAQVQWNKI----DP--------YLFSVEIVPICCGDLIILPSNIAASLG 110
Query: 269 -NLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVS 327
N+GP+VIC +V + LLDPFTL HCFL A QYW + F + QLVEY VL +E +
Sbjct: 111 PNIGPIVICTRVAKTFTLLDPFTLTHCFLKAGQYWDAPFTPSFSRPQLVEYAVLGIEKLD 170
Query: 328 -----------------------------SEVNVGGSKYVLADAQVARVSDFGKNDTIFS 358
+ KY LA+A VARV D G N+ F
Sbjct: 171 EEEEEEVEENKQKKKLVFKDEHDEDGDAFATYTAAAKKYRLANAIVARVKDIGNNNHTFQ 230
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPR 418
IRTHLG +L PGD+ALGYDL + ILI K K R P
Sbjct: 231 IRTHLGRILKPGDHALGYDLPEG----------------DPILITKISFAKEENGRVVPV 274
Query: 419 SWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNI-SLYRNKDYQPSEMAS 477
Q+K Y+ FL+DL+++P+L F+ ++YRN Y
Sbjct: 275 -------------------QDKWESGYQLFLKDLQQDPKLLFDQRAIYRNPTYCHPSGPL 315
Query: 478 VTDGEDVPSVPLDELL 493
P PL++LL
Sbjct: 316 FRSPFYRPFFPLEDLL 331
>gi|170057906|ref|XP_001864688.1| CGI-07 protein [Culex quinquefasciatus]
gi|167877198|gb|EDS40581.1| CGI-07 protein [Culex quinquefasciatus]
Length = 178
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LCC+CG P+ PN +NMCVACLR+ VDIT + K I+ C C+ YL PP W++ LE
Sbjct: 21 ILCCECGTPIEPNPSNMCVACLRTHVDITANIPKQAIVFFCRNCERYLNPPSEWVQCSLE 80
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
SKELL+ C+KRLK L V+LV+A FIWTEPHSKRIKVKL V EV++G +L+Q +VVE+
Sbjct: 81 SKELLSVCLKRLKGLKEVKLVDAGFIWTEPHSKRIKVKLTVHGEVMDGCVLQQVFVVEFT 140
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFY 173
+ MCD C R +A D W VQ+R+ + + F +
Sbjct: 141 VNNQMCDDCHRTEAK-DFWRCLVQVRRSRSQKTLFIW 176
>gi|124512110|ref|XP_001349188.1| 60S ribosomal subunit export protein, putative [Plasmodium
falciparum 3D7]
gi|23498956|emb|CAD51034.1| 60S ribosomal subunit export protein, putative [Plasmodium
falciparum 3D7]
Length = 888
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 183/317 (57%), Gaps = 6/317 (1%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITE-GLQKHV-IISHCPECDCYLQPPRTWIKAQ 74
+ C CG + N + MC C+ ++ + K +I +C EC YL W+ +
Sbjct: 321 ISCILCGDSIKANTSKMCHNCILQNIESNSININKDTYLIYYCRECKRYLH--NRWVYCE 378
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LESKELL C+K++ L ++++++A+F++TEPHSKR+KV + VQ+E++N I E ++
Sbjct: 379 LESKELLALCLKKVNKLKKLKILDAKFLYTEPHSKRLKVHVSVQEELINNFISEMEIIIH 438
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
YV + CD C + + P + V +RQ V H++T +LE L+LK + I I
Sbjct: 439 YVIKYTQCDDCKK-KYTPYTYNTCVSVRQKVEHKKTLLFLENLLLKCNMNENIINIVSNP 497
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DF F +R+ A+KF +F+ + ++ K L++HD +N +NY YTFS++I PIC+
Sbjct: 498 DGLDFHFLSRTDALKFCDFILSKTMSKCKNSKHLINHDANNNTYNYLYTFSIDICPICKY 557
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPF-TLRHCFLDADQYWRSSFKSLLTSR 313
DLI P +A G +C+ V+ I L++PF + H ++ ++Y ++ F LL+
Sbjct: 558 DLIFFPKGLANKYGIKNVFYLCIHVSIFIILINPFSSANHVYVSPERYNKNPFLPLLSKA 617
Query: 314 QLVEYIVLDVEVVSSEV 330
+++L++E ++ +V
Sbjct: 618 DAKVFLILNIEYINDDV 634
>gi|156095185|ref|XP_001613628.1| mRNA decay protein [Plasmodium vivax Sal-1]
gi|148802502|gb|EDL43901.1| mRNA decay protein, putative [Plasmodium vivax]
Length = 892
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 184/329 (55%), Gaps = 6/329 (1%)
Query: 4 DAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITE-GLQKHV-IISHCPECD 61
DA + C CG + NA+ MC C+ V+ + + K +I +C EC
Sbjct: 344 DAAEHQQSDNTQLIACILCGDSIKANASKMCSNCILQNVESSSVNINKDTYLIYYCRECK 403
Query: 62 CYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
YL W+ +LESKELL C+K++ L ++++++A+F++TEPHSKRIK+ L VQ+E+
Sbjct: 404 RYLH--NRWVYCELESKELLALCLKKVNKLKKLKILDAKFLYTEPHSKRIKIHLSVQEEL 461
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
+N I E ++ YV + CD C + P + V +RQ V H++T +LE L+LK+
Sbjct: 462 INNFISEMELILHYVIKYTQCDDCKKTYT-PYTYNTCVSVRQKVEHKKTLLFLESLLLKY 520
Query: 182 DAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYK 241
+ I I G+DF F +R+ A+KF +F+ + ++ K L++HD +N +NY
Sbjct: 521 NMNENIINIVSNPDGLDFHFLSRTDALKFCDFILSKTMSKCKNSKHLINHDANNNTYNYL 580
Query: 242 YTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPF-TLRHCFLDADQ 300
Y+FS++I PIC+ DLI P +++ G +C+ V+ I L++PF + + ++
Sbjct: 581 YSFSIDICPICKYDLIFFPKDLSIKYGMKSSFYLCLHVSIFIILINPFCSSNSAHISQER 640
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSE 329
Y + F LL+ +++L+VE + S+
Sbjct: 641 YNKHPFLPLLSKADSKVFLILNVEYIDSD 669
>gi|357494009|ref|XP_003617293.1| Nonsense-mediated mRNA decay protein [Medicago truncatula]
gi|355518628|gb|AET00252.1| Nonsense-mediated mRNA decay protein [Medicago truncatula]
Length = 312
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 149/294 (50%), Gaps = 40/294 (13%)
Query: 205 SHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVA 264
+ A V+ + + P+++R D S KY F VEI PI DLI LPP +A
Sbjct: 51 ARAGHLVDCIRRTVPIKTRCD---------SIPSEIKYHFFVEIVPIFCGDLIFLPPNIA 101
Query: 265 VSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV- 323
+LG +VIC +V I LLDPFTL L AD+YW + F T QLV+Y+VLD+
Sbjct: 102 ATLG--ANIVICTRVAKKITLLDPFTLTAFSLKADEYWNAPFTHSFTRTQLVKYVVLDIV 159
Query: 324 -EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSAN 382
+ KY LADA VARV DFG NDT F I+THLGH+L GDYALGYDL
Sbjct: 160 LQEEEEIAAAAAKKYRLADAVVARVEDFGNNDTTFQIKTHLGHILKSGDYALGYDLSGRK 219
Query: 383 NNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGR---TDQE 439
G LP ILI KS D+ GR +
Sbjct: 220 EGGGANTNING-DLPAAILITKS----------------------SYDEENGRIVVVVEG 256
Query: 440 KMNKEYEEFLRDLEENPELRFNI-SLYRNKDYQPSEMASVTDGEDVPSVPLDEL 492
K +Y+ FL+DL+++ L F + ++YRN+ Y PS ++ + PSVPL+EL
Sbjct: 257 KWESDYQLFLKDLQQDTRLTFRVAAMYRNQTYHPSSGEAIREHFTRPSVPLEEL 310
>gi|290993544|ref|XP_002679393.1| predicted protein [Naegleria gruberi]
gi|284093009|gb|EFC46649.1| predicted protein [Naegleria gruberi]
Length = 452
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 192/384 (50%), Gaps = 68/384 (17%)
Query: 159 VQLRQHVTHRRTFFYLEQLILKHDAAAR--AIRITQMDQGIDFFFG-------------- 202
VQ+RQ ++H R F+ EQL+LKH + + ++ G D ++
Sbjct: 83 VQIRQKISHERNLFFFEQLMLKHQITRKFPHLHFEKVAHGFDIYYKPNAYSELNEEMQKE 142
Query: 203 ---------NRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNF--------------- 238
S+ +KF++ + + P+R +K +++ +
Sbjct: 143 GGGENQSQEEGSNVIKFIKLINNLMPIRDLENKSVMTGAFQKGKLGGGIGAVGGASSLEG 202
Query: 239 ---NYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCF 295
+ + +EI+PIC DL+CLP ++ S G +GPLVIC KVTNS+ +DP+TL++
Sbjct: 203 PTTEHNEQYFIEIAPICVGDLVCLPQRLFNSSGQIGPLVICYKVTNSLFFIDPYTLKNFE 262
Query: 296 LDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSE----VNVGGSKYVLADAQVARVSDFG 351
+ A Y++S F++LL+ QL EY + D+EV ++ ++ ++ L++ + + S+ G
Sbjct: 263 ITAQNYFQSPFRALLSVTQLAEYTINDIEVKKNQKGRPISAQAGRFQLSEVSLVKTSELG 322
Query: 352 KNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRL 411
+ + H+ LL GD GYDL +AN N +L YK LVLP+ I++KK YE
Sbjct: 323 VAPDVQTF-CHITQLLEVGDTVYGYDLKNANLNSDDLASYKKLVLPDVIIVKKKYE---- 377
Query: 412 RKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYR--NKD 469
R WKL M D +G +Y+ FL DLEE+ ++R + L++ N
Sbjct: 378 --WETQRIWKLHHFCM---DPEGN--------DYDAFLNDLEEDQDMRSKVMLFKHENSG 424
Query: 470 YQPSEMASVTDGEDVPSVPLDELL 493
S++ +DG++ P V L+ELL
Sbjct: 425 SIASKIKFDSDGKN-PRVRLEELL 447
>gi|389581951|dbj|GAB64672.1| mRNA decay protein [Plasmodium cynomolgi strain B]
Length = 887
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 182/316 (57%), Gaps = 6/316 (1%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITE-GLQKHV-IISHCPECDCYLQPPRTWIKAQ 74
+ C CG + NA+ MC C+ V+ + + K +I +C EC YL W+ +
Sbjct: 355 IACILCGDSIKANASKMCNNCILQNVESSSVNINKDTYLIYYCRECKRYLH--NRWVYCE 412
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LESKELL C+K++ L ++++++A+F++TEPHSKRIK+ L VQ+E++N I E ++
Sbjct: 413 LESKELLALCLKKVNKLKKLKILDAKFLYTEPHSKRIKIHLSVQEELINNFISEMELILH 472
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
YV + CD C + P + V +RQ V H++T +LE L+LK++ I I
Sbjct: 473 YVIKYTQCDDCKKTYT-PYTYNTCVSVRQKVEHKKTLLFLESLLLKYNMNENIINIVSNP 531
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DF F +R+ A+KF +F+ + ++ K L++HD +N +NY Y+FS++I PIC+
Sbjct: 532 DGLDFHFLSRTDALKFCDFILSKTMSKCKNSKHLINHDANNNTYNYLYSFSIDICPICKY 591
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPF-TLRHCFLDADQYWRSSFKSLLTSR 313
DLI P +++ G +C+ V+ I L++PF + + ++Y + F LL+
Sbjct: 592 DLIFFPKDLSIKYGIKSSFYLCLHVSIFIILINPFCSSNSAHISQERYNKHPFLPLLSKA 651
Query: 314 QLVEYIVLDVEVVSSE 329
+++L+VE + ++
Sbjct: 652 DSKVFLILNVEYIDND 667
>gi|221052471|ref|XP_002257811.1| NMD3 homologue [Plasmodium knowlesi strain H]
gi|193807642|emb|CAQ38147.1| NMD3 homologue, putative [Plasmodium knowlesi strain H]
Length = 881
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 181/316 (57%), Gaps = 6/316 (1%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEG-LQKHV-IISHCPECDCYLQPPRTWIKAQ 74
+ C CG + N + MC C+ V+ + + K +I +C EC YL W+ +
Sbjct: 354 IACILCGDSIKANTSKMCSNCILQNVESSSANINKDTYLIYYCRECKRYLH--NRWVYCE 411
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LESKELL C+K++ L ++++++A+F++TEPHSKRIK+ L VQ+E++N I E ++
Sbjct: 412 LESKELLALCLKKVNKLKKLKILDAKFLYTEPHSKRIKIHLSVQEELINNFISEMELILH 471
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
YV + CD C + P + V +RQ V H++T +LE L+LK++ I I
Sbjct: 472 YVIKYTQCDDCKKTYT-PYTYNTCVSVRQKVEHKKTLLFLESLLLKYNMNENIINIVSNP 530
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
G+DF F +R+ A+KF +F+ + ++ K L++HD +N +NY Y+FS++I PIC+
Sbjct: 531 DGLDFHFLSRTDALKFCDFILSKTMSKCKNSKHLINHDANNNTYNYLYSFSIDICPICKY 590
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPF-TLRHCFLDADQYWRSSFKSLLTSR 313
DLI P +++ G +C+ V+ I L++PF + + ++Y + F LL+
Sbjct: 591 DLIFFPKDLSIKYGMKSTFYLCLHVSIFIILINPFCSANSAHISQERYNKHPFLPLLSKA 650
Query: 314 QLVEYIVLDVEVVSSE 329
+++L+VE + ++
Sbjct: 651 DSKVFLILNVEYIDND 666
>gi|357481881|ref|XP_003611226.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355512561|gb|AES94184.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 406
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 181/383 (47%), Gaps = 78/383 (20%)
Query: 153 DQWVAAVQLRQ-HVTHRRTFFYLEQLILKHDAA--ARAIRITQM---DQGIDFFFGNRSH 206
+ WV + +RQ HV RT F+LEQ+ + + + +RI D+G+ F F + S
Sbjct: 58 EGWVGVLNVRQQHVCQLRTLFHLEQISVWTNFTKLSHIMRIKNKIDDDEGLSFCFNSLSD 117
Query: 207 AVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVS 266
A V + + P + R + ++ + + FSVEI PIC DLI LP +A S
Sbjct: 118 ATDVVNLIVDILPSKVRLNMNMIPPEERC-------IFSVEIVPICCGDLIILPSHIAAS 170
Query: 267 LG-NLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV-- 323
G N+GP+VIC +V LLDPFTL HCFL A QYW + F + QLVEY+VL +
Sbjct: 171 FGPNIGPIVICTRVAKIFTLLDPFTLTHCFLKAGQYWDAPFTPSFSRPQLVEYVVLGINL 230
Query: 324 ------------------------------EVVSSEVNVGGSKYVLADAQVARVSDFGKN 353
V + KY LADA VARV D G N
Sbjct: 231 KEELEELVEENKEKKKLIIELYAADAVAAAAAVVAAEAAAAKKYRLADAMVARVKDIGNN 290
Query: 354 D-TIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKK-SYEEKRL 411
+ T F I+THLG +L PGD+ALGYDL S + LP ILI K SY E+
Sbjct: 291 NHTTFQIKTHLGRILKPGDHALGYDLSSGGVDTN---------LPAAILITKISYAEE-- 339
Query: 412 RKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFN-ISLYRNKDY 470
++ + Q+K +Y+ FL+DL+++ +L F+ ++YRN+
Sbjct: 340 ------------------ENGRVVAVQDKWESDYQLFLKDLQQDTKLLFDRRAIYRNRTN 381
Query: 471 QPSEMASVTDGEDVPSVPLDELL 493
++ P PL++LL
Sbjct: 382 CHPFDTTIKSPFRRPFYPLEDLL 404
>gi|357481287|ref|XP_003610929.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355512264|gb|AES93887.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 319
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 172/366 (46%), Gaps = 76/366 (20%)
Query: 153 DQWVAAVQLRQ-HVTHRRTFFYLEQL-ILKHDAAARAIRITQ--MDQGIDFFFGNRSHAV 208
+ + A V +RQ HV+ RT F+LEQ+ + H IR + +D+G+ F F + S A
Sbjct: 3 EGFCAVVNVRQQHVSELRTLFHLEQVSVSNHLGILEKIRRIKYNIDEGLSFCFNSISDAA 62
Query: 209 KFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLG 268
K V + + P + +K DP Y FSVEI PIC DLI LP +A SLG
Sbjct: 63 KVVNLITGILPALVQWNKI----DP--------YLFSVEIVPICCGDLIILPSNIAASLG 110
Query: 269 -NLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVE--- 324
N+GP+VIC +V + LLDPFTL CFL AD+YW + F + QLVEY+VL +E
Sbjct: 111 PNIGPIVICTRVARTFTLLDPFTLTRCFLKADRYWDAPFTPSFSRHQLVEYVVLGIEKLD 170
Query: 325 ----------------VVSSEVNVGGSKYVLADAQVARVSDFGKND-TIFSIRTHLGHLL 367
+ KY LA+A VARV D G N+ T F IRTHL +L
Sbjct: 171 EEEEEEEVEENKQKNKIFGYADAAAAKKYRLANAIVARVKDIGNNNHTTFQIRTHLSRIL 230
Query: 368 NPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDM 427
PGD+ALGYDL + ILI K K R P
Sbjct: 231 KPGDHALGYDLPEG----------------DPILITKISFAKEENGRVIPV--------- 265
Query: 428 EVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSV 487
Q+K +Y+ FL+DL+++P+L F+ RN + P
Sbjct: 266 ----------QDKWESDYQLFLKDLQQDPKLLFD----RNPTNCHPSGPPIRSPFRRPFY 311
Query: 488 PLDELL 493
PL++LL
Sbjct: 312 PLEDLL 317
>gi|357481849|ref|XP_003611210.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355512545|gb|AES94168.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 669
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 172/358 (48%), Gaps = 78/358 (21%)
Query: 153 DQWVAAVQLRQ-HVTHRRTFFYLEQLILKHDAA--ARAIRITQM---DQGIDFFFGNRSH 206
+ WV + +RQ HV RT F+LEQ+ + + + +RI D+G+ F F + S
Sbjct: 3 EGWVGVLNVRQQHVCQLRTLFHLEQISVWTNLTMLSHIMRIKNKIDDDEGLSFCFNSLSD 62
Query: 207 AVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVS 266
A V + + P + R + ++ + + FSVEI PIC DLI LP +A S
Sbjct: 63 ATDVVNLIVDILPSKVRLNMNMIPPEERC-------IFSVEIVPICCGDLIILPSHIAAS 115
Query: 267 LG-NLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV-- 323
G N+GP+VIC +V LLDPFTL HCFL A QYW + F + QLVEY+VL +
Sbjct: 116 FGPNIGPIVICTRVAKIFTLLDPFTLTHCFLKAGQYWDAPFTPSFSRPQLVEYVVLGINL 175
Query: 324 ------------------------------EVVSSEVNVGGSKYVLADAQVARVSDFGKN 353
V + KY LADA VARV D G N
Sbjct: 176 KEELEELVEENKEKKKLIIELYAADAVAAAAAVVAAEAAAAKKYRLADAMVARVKDIGNN 235
Query: 354 D-TIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKK-SYEEKRL 411
+ T F I+THLG +L PGD+ALGYDL S + LP ILI K SY E+
Sbjct: 236 NHTTFQIKTHLGRILKPGDHALGYDLSSGGVDTN---------LPAAILITKISYAEE-- 284
Query: 412 RKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFN-ISLYRNK 468
++ + Q+K +Y+ FL+DL+++ +L F+ ++YRN+
Sbjct: 285 ------------------ENGRVVAVQDKWESDYQLFLKDLQQDTKLLFDRRAIYRNR 324
>gi|305380481|gb|ADM49017.1| nonsense-mediated protein [Talaromyces verruculosus]
Length = 245
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 23/250 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPHTLQTAEVSAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD LGY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVLGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLYRNKDYQP-----------SEMASVTDGEDVPSV 487
+++ ++E FLRD+EE+ ELR +SLY+ K+ P EMA + ++ P +
Sbjct: 174 DRLEADFEMFLRDIEEDQELRSTLSLYKAKNENPRPEKMDVVEEQDEMADDSSEDEAPKI 233
Query: 488 PLDELLADLD 497
+DELL + D
Sbjct: 234 NMDELLDEFD 243
>gi|357494467|ref|XP_003617522.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355518857|gb|AET00481.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 259
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 137/274 (50%), Gaps = 45/274 (16%)
Query: 241 KYTFSVEISPICREDLICLPPKVAVSLG-NLGPLVICMKVTNSIALLDPFTLRHCFLDAD 299
+Y F VEI PIC DLI LPP V S G N+GP+VIC +V + LLDPFTL HCFLDA
Sbjct: 8 RYLFRVEIVPICCGDLIFLPPNVVASFGENIGPIVICTRVAKTFTLLDPFTLTHCFLDAH 67
Query: 300 QYWRSSFKSLLTSRQLVEYIVLDVEVVSSE------------------VNVGGSKYVLAD 341
QYW++ F QLVEY+VLD ++ KY LAD
Sbjct: 68 QYWKAPFTHSFNRTQLVEYVVLDTVLLQDNQDEEEEEDKEKKKNYDADAVAAAKKYCLAD 127
Query: 342 AQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETIL 401
A VARV D G NDT F IRTHLG +L PGD+ALGYDL D + LP IL
Sbjct: 128 AVVARVKDIGNNDTTFQIRTHLGRILKPGDHALGYDLSGGEGG---ADTNININLPAAIL 184
Query: 402 IKK-SYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRF 460
I K SY E+ R + W+ +Y+ F DL+++ +L F
Sbjct: 185 ITKISYAEENGRVVALHDKWE---------------------SDYQLFFNDLQQDTKLLF 223
Query: 461 NI-SLYRNKDYQPSEMASVTDGEDVPSVPLDELL 493
N+ + YR++ + P VPL++LL
Sbjct: 224 NVRAAYRDQTKSYTYDGPFVIPPTRPFVPLEDLL 257
>gi|305380544|gb|ADM49045.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 243
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 147/250 (58%), Gaps = 23/250 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L +N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIHESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPARKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSV 487
+++ ++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P +
Sbjct: 174 DRLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEHHEMADDSSEDEAPKI 233
Query: 488 PLDELLADLD 497
++ELL + D
Sbjct: 234 NMEELLDEFD 243
>gi|305380500|gb|ADM49025.1| nonsense-mediated protein [Talaromyces pinophilus]
gi|305380502|gb|ADM49026.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 245
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 147/250 (58%), Gaps = 23/250 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSV 487
E++ ++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P +
Sbjct: 174 ERLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKI 233
Query: 488 PLDELLADLD 497
++ELL + D
Sbjct: 234 SMEELLDEFD 243
>gi|305380498|gb|ADM49024.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 243
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 147/250 (58%), Gaps = 23/250 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSV 487
E++ ++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P +
Sbjct: 174 ERLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKI 233
Query: 488 PLDELLADLD 497
++ELL + D
Sbjct: 234 SMEELLDEFD 243
>gi|305380522|gb|ADM49035.1| nonsense-mediated protein [Penicillium cecidicola]
Length = 245
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 147/250 (58%), Gaps = 23/250 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNSYFARTHLGGVLHVGDSVMGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSV 487
E++ ++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P +
Sbjct: 174 ERLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKI 233
Query: 488 PLDELLADLD 497
++ELL + D
Sbjct: 234 SMEELLDEFD 243
>gi|305380510|gb|ADM49029.1| nonsense-mediated protein [Talaromyces pinophilus]
gi|305380512|gb|ADM49030.1| nonsense-mediated protein [Talaromyces pinophilus]
gi|305380514|gb|ADM49031.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 245
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 146/250 (58%), Gaps = 23/250 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G +P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIQESSQYGSTIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSV 487
E++ ++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P +
Sbjct: 174 ERLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKI 233
Query: 488 PLDELLADLD 497
++ELL + D
Sbjct: 234 SMEELLDEFD 243
>gi|305380542|gb|ADM49044.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 245
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 147/250 (58%), Gaps = 23/250 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L +N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIHESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPARKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSV 487
+++ ++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P +
Sbjct: 174 DRLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKI 233
Query: 488 PLDELLADLD 497
++ELL + D
Sbjct: 234 NMEELLDEFD 243
>gi|305380563|gb|ADM49054.1| nonsense-mediated protein [Talaromyces flavus]
Length = 245
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 146/250 (58%), Gaps = 23/250 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G ++P+ +L++K Y K K+ K R+WKLK + E ++ + D
Sbjct: 117 NDPNFDAIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMSYEEEEPGRKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSV 487
E++ ++E FLRD+EE+ ELR +SLY +N++ +P EMA ++ P++
Sbjct: 174 ERLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADERSEDEAPTI 233
Query: 488 PLDELLADLD 497
++ELL + D
Sbjct: 234 NMEELLDEFD 243
>gi|305380486|gb|ADM49019.1| nonsense-mediated protein [Talaromyces aculeatus]
Length = 245
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 147/250 (58%), Gaps = 23/250 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSV 487
E++ ++E FLRD+EE+ +LR +SLY +N++ +P EMA + ++ P +
Sbjct: 174 ERLEADFEMFLRDIEEDQDLRSTLSLYKAKNENRRPEKMDVVEEHDEMADDSSEDEAPKI 233
Query: 488 PLDELLADLD 497
+DELL + D
Sbjct: 234 NMDELLDEFD 243
>gi|305380507|gb|ADM49028.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 243
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 145/248 (58%), Gaps = 23/248 (9%)
Query: 266 SLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEV 325
SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E
Sbjct: 1 SLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEP 60
Query: 326 VSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNND 385
V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N ND
Sbjct: 61 VGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFND 116
Query: 386 MELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEK 440
D + G +P+ +L++K Y K K+ K R+WKLK ++ E ++ + D E+
Sbjct: 117 PNFDAIQESSQYGSTIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDAER 173
Query: 441 MNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSVPL 489
+ ++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P + +
Sbjct: 174 LEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKISM 233
Query: 490 DELLADLD 497
+ELL + D
Sbjct: 234 EELLDEFD 241
>gi|305380529|gb|ADM49038.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 243
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 146/248 (58%), Gaps = 23/248 (9%)
Query: 266 SLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEV 325
SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E
Sbjct: 2 SLGNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEP 61
Query: 326 VSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNND 385
V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L +N ND
Sbjct: 62 VGE----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFND 117
Query: 386 MELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEK 440
D G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D ++
Sbjct: 118 PNFDAIHESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPARKQDADR 174
Query: 441 MNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSVPL 489
+ ++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P + +
Sbjct: 175 LEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKINM 234
Query: 490 DELLADLD 497
+ELL + D
Sbjct: 235 EELLDEFD 242
>gi|305380525|gb|ADM49036.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 239
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 145/246 (58%), Gaps = 23/246 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L +N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIHESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPARKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSV 487
+++ ++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P +
Sbjct: 174 DRLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKI 233
Query: 488 PLDELL 493
++ELL
Sbjct: 234 NMEELL 239
>gi|242059969|ref|XP_002459130.1| hypothetical protein SORBIDRAFT_03g046345 [Sorghum bicolor]
gi|241931105|gb|EES04250.1| hypothetical protein SORBIDRAFT_03g046345 [Sorghum bicolor]
Length = 584
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 118/169 (69%), Gaps = 5/169 (2%)
Query: 243 TFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYW 302
+SVE+ ICR+DLI LP + +LG LGPLV+C+KV+ SIALLD T+R + +Y
Sbjct: 371 AYSVELCAICRDDLIFLPREACRALGGLGPLVLCVKVSKSIALLDTNTMRLAVMGIAEYD 430
Query: 303 RSSFKSLLTSRQLVEYIVLDVEVVSSEVNVG----GSKYVLADAQVARVSDFGKNDTIFS 358
R F+ LL+S +LVEY+VLDVE+ EV+V GS Y+++ QVAR SD GKNDT+F+
Sbjct: 431 RYMFEPLLSSSRLVEYVVLDVELDHREVHVSVLVHGSPYLMSWVQVARASDLGKNDTVFT 490
Query: 359 IRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYE 407
++TH+G LNPGDY LGYDL + NN D+E + LP+ +L+KK Y+
Sbjct: 491 VKTHIGWRLNPGDYVLGYDLCNVNNQDLESYGQRH-ELPDAVLVKKKYK 538
>gi|300706359|ref|XP_002995452.1| hypothetical protein NCER_101641 [Nosema ceranae BRL01]
gi|239604564|gb|EEQ81781.1| hypothetical protein NCER_101641 [Nosema ceranae BRL01]
Length = 245
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 143/250 (57%), Gaps = 6/250 (2%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LC KCGIP +C+ C + + I+E L+K + + C C+ YL P+TW K +
Sbjct: 2 ILCYKCGIPTESTEYKLCIRCTTTTITISEKLKKFINVDWCKGCERYLNKPKTWSKYEWG 61
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYV 136
S+ELL + +K +LN ++++ F +TE HSKR+ +++ ++ NG + ++ + Y
Sbjct: 62 SRELLIYLIKSNTSLNYFEILDSCFDYTEEHSKRMNIQVLLEA---NG--IRENVEIRYT 116
Query: 137 QQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQG 196
++ C C +++A W A VQ+R + H R F LEQLI+K+ I G
Sbjct: 117 IKNKQCPDCEKIEAK-QHWKAVVQVRHRMEHPRIFILLEQLIIKNKQYLDTTNIKMRKGG 175
Query: 197 IDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDL 256
IDF+F +R+ A K V F+ V PV+ ++L+S D ++ NYK++FS+EI+P+C +DL
Sbjct: 176 IDFYFTDRTCAYKLVNFIESVLPVKIILSERLISKDIQNAKSNYKFSFSIEIAPLCTDDL 235
Query: 257 ICLPPKVAVS 266
+ L A S
Sbjct: 236 VILEKSFAHS 245
>gi|305380520|gb|ADM49034.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 241
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 144/246 (58%), Gaps = 23/246 (9%)
Query: 268 GNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVS 327
GN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 1 GNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVG 60
Query: 328 SEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDME 387
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N ND
Sbjct: 61 E----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPN 116
Query: 388 LDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMN 442
D + G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D E++
Sbjct: 117 FDAIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDAERLE 173
Query: 443 KEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSVPLDE 491
++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P + ++E
Sbjct: 174 ADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDESPKISMEE 233
Query: 492 LLADLD 497
LL + D
Sbjct: 234 LLDEFD 239
>gi|305380557|gb|ADM49051.1| nonsense-mediated protein [Talaromyces sp. LCP 4272]
Length = 241
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 143/247 (57%), Gaps = 23/247 (9%)
Query: 266 SLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEV 325
SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E
Sbjct: 2 SLGNINPLTLCYRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEP 61
Query: 326 VSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNND 385
V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N ND
Sbjct: 62 VGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFND 117
Query: 386 MELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEK 440
D + G +P+ +L++K Y K K+ K R+WKLK ++ E ++ + D E+
Sbjct: 118 PNFDAIQESSQYGSTIPDVVLVRKFYARK---KKGKSRNWKLKRMNYEEEEPGRKQDAER 174
Query: 441 MNKEYEEFLRDLEENPELRFNISLY--RNKDYQPSEMASVTDGE---------DVPSVPL 489
+ ++E FLRD+EE+ ELR +SLY +N++ +P +M V + D P + +
Sbjct: 175 LEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDLVEEHHEIDDDIPESDTPKINM 234
Query: 490 DELLADL 496
+ELL +
Sbjct: 235 EELLDEF 241
>gi|305380538|gb|ADM49042.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 229
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 136/224 (60%), Gaps = 14/224 (6%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L +N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIHESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPARKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPSEMASVTD 480
+++ ++E FLRD+EE+ ELR +SLY +N++ +P +M V +
Sbjct: 174 DRLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEE 217
>gi|305380569|gb|ADM49057.1| nonsense-mediated protein [Talaromyces flavus]
Length = 227
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 14/228 (6%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G ++P+ +L++K Y K K+ K R+WKLK + E ++ + D
Sbjct: 117 NDPNFDAIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMSYEEEEPGRKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPSEMASVTDGEDV 484
E++ ++E FLRD+EE+ ELR +SLY +N++ +P +M V + +++
Sbjct: 174 ERLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEM 221
>gi|357494285|ref|XP_003617431.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355518766|gb|AET00390.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 322
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 126/355 (35%), Positives = 166/355 (46%), Gaps = 72/355 (20%)
Query: 162 RQHVTHRRTFFYLEQL-ILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPV 220
+QHV RTFF+LEQ+ +L + R + + D ID + VKF
Sbjct: 15 QQHVCQLRTFFHLEQISVLNNFGTVRKAKRIKYD--ID---EENTSCVKF---------- 59
Query: 221 RSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVT 280
D ++ P+S Y F V+I PIC DLI LPP V SLG +VIC +V
Sbjct: 60 ----DWDMIL--PESE----IYLFRVKIVPICCGDLIFLPPNVVASLG--PNIVICTRVA 107
Query: 281 NSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVV-------------- 326
+ LLDPFTL HCFLDA QYW++ F QLVEY+VLD+ ++
Sbjct: 108 KTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDIVLLQDNQDEEEEEEVVE 167
Query: 327 ------SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYS 380
+ KY LADA VARV D G NDT F IRTHLG +L PGD+ALGYDL S
Sbjct: 168 ENKKEKDAAAAAAAKKYRLADAVVARVKDTGNNDTTFQIRTHLGRILKPGDHALGYDL-S 226
Query: 381 ANNNDMELDKYKGLVLPETILIKK-SYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQE 439
+ D LP ILI K SY E R + W+
Sbjct: 227 GGVGEGGADTNTNNNLPAAILISKISYAEVNGRVVAVKDKWE------------------ 268
Query: 440 KMNKEYEEFLRDLEENPELRFNI-SLYRNKDYQPSEMASVTDGEDVPSVPLDELL 493
+Y+ F DL++N +L F++ + YR++ + P PL++LL
Sbjct: 269 ---SDYQLFFNDLQQNTKLIFSVRAAYRDQTKSYTYDGPFRIPPTRPFFPLEDLL 320
>gi|305380496|gb|ADM49023.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 206
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 128/211 (60%), Gaps = 12/211 (5%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G +P+ +L++K Y K K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIQESSQYGSTIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLYRNKD 469
E++ ++E FLRD+EE+ ELR +SLY+ K+
Sbjct: 174 ERLEADFEMFLRDIEEDQELRSTLSLYKAKN 204
>gi|305380561|gb|ADM49053.1| nonsense-mediated protein [Talaromyces flavus]
Length = 239
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 142/245 (57%), Gaps = 23/245 (9%)
Query: 269 NLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSS 328
N+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 1 NINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE 60
Query: 329 EVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMEL 388
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N ND
Sbjct: 61 ----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNF 116
Query: 389 DKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNK 443
D + G ++P+ +L++K Y K K+ K R+WKLK + E ++ + D E++
Sbjct: 117 DAIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMSYEEEEPGRKQDAERLEA 173
Query: 444 EYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSVPLDEL 492
++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P + ++EL
Sbjct: 174 DFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKINMEEL 233
Query: 493 LADLD 497
L + D
Sbjct: 234 LDEFD 238
>gi|444705851|gb|ELW47238.1| 60S ribosomal export protein NMD3 [Tupaia chinensis]
Length = 360
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 9/160 (5%)
Query: 63 YLQPPRTWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV 121
Y QPP WI+ LESKELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV
Sbjct: 16 YFQPPGAWIQCALESKELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEV 75
Query: 122 LNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKH 181
+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+
Sbjct: 76 MNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKY 134
Query: 182 DAAARAIRITQMD----QGIDFF---FGNRSHAVKFVEFV 214
+RI ++ G F+ F + H + EF+
Sbjct: 135 GMHQNTLRIKEIHVADIDGSTFWSHPFNSLCHPKQLEEFI 174
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 18/220 (8%)
Query: 296 LDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDF 350
+D +W F SL +QL E+IV++ +V + G+ K+ L + V + S+
Sbjct: 151 IDGSTFWSHPFNSLCHPKQLEEFIVMECSIVQNLKRSAGAGMISKKHTLGEVWVQKTSEM 210
Query: 351 GKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKR 410
+ F RTHLGHLLNPGD LG+DL + N ND ++K +P+ +LIKKSY+
Sbjct: 211 STDKQYFC-RTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT- 268
Query: 411 LRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDY 470
KR + R+WKLK L D TD E ++Y++FL DLEE+ +R N+++YR+
Sbjct: 269 --KRQRRRNWKLKELAR--DRENMDTDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSSI 321
Query: 471 QPSEMASVTDGEDVPSVPLDELLADLDLKSD-DGEGDDSM 509
P E S TD E P + L E+L DL + D GE SM
Sbjct: 322 -PVE--SDTDDEGAPRISLAEMLEDLHISQDATGEEGASM 358
>gi|305380550|gb|ADM49048.1| nonsense-mediated protein [Talaromyces ruber]
Length = 219
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 137/224 (61%), Gaps = 14/224 (6%)
Query: 268 GNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVS 327
GN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 1 GNINPLTLCFRVGTSISLLDPHTLQTAEVAAPIYWRQPFKNLADVQELVEFVVMDIEPVG 60
Query: 328 SEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDME 387
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L +N ND
Sbjct: 61 E----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPN 116
Query: 388 LDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMN 442
D G ++P+ +L++K Y K K++K R+WKLK ++ E ++ + D +++
Sbjct: 117 FDAIHESSQYGSMIPDVVLVRKYYARK---KKTKSRNWKLKRMNYEEEEPARKQDADRLE 173
Query: 443 KEYEEFLRDLEENPELRFNISLY--RNKDYQPSEMASVTDGEDV 484
++E FLRD+EE+ ELR +SLY +N++ +P +M V + +++
Sbjct: 174 ADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVQEQDEM 217
>gi|294888247|ref|XP_002772404.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
gi|239876562|gb|EER04220.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
Length = 165
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 102/144 (70%), Gaps = 3/144 (2%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
+VLCC CG M PN +NMCV C++ EVDITEG+ K ++++C EC+ Y +PP W+ +
Sbjct: 25 ANVLCCVCGASMTPNQSNMCVNCMKGEVDITEGISKQAVVNYCRECNRYQRPP--WVPCE 82
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
ES+ELL C+K++K LN+V+LV+A FIW P SKR+KVKL VQKEV+NGA+++QS +V+
Sbjct: 83 PESRELLGICLKKIKGLNKVKLVDANFIWQAPTSKRMKVKLTVQKEVMNGAVMQQSMIVD 142
Query: 135 YVQQDHMCDSCSRVQANPDQWVAA 158
++ CD C R P W A+
Sbjct: 143 FIVAWQQCDDCKRTYT-PHTWNAS 165
>gi|305380565|gb|ADM49055.1| nonsense-mediated protein [Talaromyces flavus]
Length = 240
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 142/245 (57%), Gaps = 23/245 (9%)
Query: 269 NLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSS 328
N+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 1 NINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE 60
Query: 329 EVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMEL 388
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N ND
Sbjct: 61 ----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNF 116
Query: 389 DKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNK 443
D + G ++P+ +L++K Y K K+ K R+WKLK + E ++ + D E++
Sbjct: 117 DAIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMSYEEEEPGRKQDAERLEA 173
Query: 444 EYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSVPLDEL 492
++E FLRD+EE+ ELR +SLY +N++ +P E+A + ++ P + ++EL
Sbjct: 174 DFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDELADDSSEDEAPKINMEEL 233
Query: 493 LADLD 497
L + D
Sbjct: 234 LDEFD 238
>gi|305380533|gb|ADM49040.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 215
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 132/218 (60%), Gaps = 14/218 (6%)
Query: 268 GNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVS 327
GN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 1 GNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVG 60
Query: 328 SEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDME 387
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L +N ND
Sbjct: 61 E----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPN 116
Query: 388 LDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMN 442
D G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D +++
Sbjct: 117 FDAIHESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPARKQDADRLE 173
Query: 443 KEYEEFLRDLEENPELRFNISLY--RNKDYQPSEMASV 478
++E FLRD+EE+ ELR +SLY +N++ +P +M V
Sbjct: 174 ADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVV 211
>gi|422294126|gb|EKU21426.1| 60s ribosomal export protein, partial [Nannochloropsis gaditana
CCMP526]
Length = 223
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 137/229 (59%), Gaps = 17/229 (7%)
Query: 26 MAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCV 85
M NAAN C C+R+E+D+ ++ + C +C + + W+ A+LES+ELL +
Sbjct: 1 MESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVL 60
Query: 86 KRLKNLNR-----------VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
K + L++ + +V A +IWTEPHSKR+K+KL V+KEVLNG +++Q E
Sbjct: 61 KFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAE 120
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
+V CD+C+ + W A QLRQ VTH+RTFF+LEQL+L ++ + +
Sbjct: 121 FV-----CDACA-LSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTR 174
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243
G+D +FG+++ A++F+ F+ P+RS+ ++L++ D ++N +++
Sbjct: 175 HGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWS 223
>gi|305380548|gb|ADM49047.1| nonsense-mediated protein [Talaromyces ruber]
Length = 197
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 125/204 (61%), Gaps = 12/204 (5%)
Query: 267 LGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVV 326
LGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 1 LGNINPLTLCFRVGTSISLLDPHTLQTAEVTAPIYWRQPFKNLADVQELVEFVVMDIEPV 60
Query: 327 SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDM 386
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L +N ND
Sbjct: 61 GE----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDP 116
Query: 387 ELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKM 441
D G ++P+ +L++K Y K K++K R+WKLK ++ E ++ + D +++
Sbjct: 117 NFDAIHESSQYGSMIPDVVLVRKYYARK---KKTKSRNWKLKRMNYEEEEPARKQDADRL 173
Query: 442 NKEYEEFLRDLEENPELRFNISLY 465
++E FLRD+EE+ ELR +SLY
Sbjct: 174 EADFEMFLRDIEEDQELRSTLSLY 197
>gi|305380567|gb|ADM49056.1| nonsense-mediated protein [Talaromyces flavus]
Length = 236
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 140/243 (57%), Gaps = 23/243 (9%)
Query: 270 LGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSE 329
+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 1 INPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE- 59
Query: 330 VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELD 389
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N ND D
Sbjct: 60 ---SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFD 116
Query: 390 KYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKE 444
+ G ++P+ +L++K Y K K+ K R+WKLK + E ++ + D E++ +
Sbjct: 117 AIQESSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMSYEEEEPGRKQDAERLEAD 173
Query: 445 YEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSVPLDELL 493
+E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P + ++ELL
Sbjct: 174 FEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDALEEQDEMADDSSEDEAPKINMEELL 233
Query: 494 ADL 496
+
Sbjct: 234 DEF 236
>gi|305380552|gb|ADM49049.1| nonsense-mediated protein [Talaromyces stipitatus]
Length = 238
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 138/243 (56%), Gaps = 23/243 (9%)
Query: 271 GPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEV 330
PL +C +V SI+LLDP TL+ + + YWR FK+L ++LVE++V+D+E V
Sbjct: 1 NPLTLCFRVGTSISLLDPNTLQTAEVPSAIYWRQPFKNLADVQELVEFVVMDIEPVGE-- 58
Query: 331 NVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDK 390
++ LA+ VAR S+ G ND + RTHLG +L+ GD LGY L N ND D
Sbjct: 59 --SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGILHVGDSVLGYHLTGTNFNDPNFDA 116
Query: 391 YK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEY 445
+ +P+ +L++K Y K K+ K R+WKLK ++ E ++ + D +++ ++
Sbjct: 117 IQESNQYASTIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDADRLEADF 173
Query: 446 EEFLRDLEENPELRFNISLYRNKD-----------YQPSEMASVTDGEDVPSVPLDELLA 494
E FLRD+EE+ ELR +SLY+ K+ + EMA + ++VP + +DELL
Sbjct: 174 EMFLRDIEEDQELRSTLSLYKAKNETRRPDRMDVVEEKDEMADDSTDDEVPKINMDELLD 233
Query: 495 DLD 497
+ D
Sbjct: 234 EFD 236
>gi|305380518|gb|ADM49033.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 244
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 146/250 (58%), Gaps = 23/250 (9%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G ++P+ +L++K +K+ K R+WKLK ++ E ++ + D
Sbjct: 117 NDPNFDAIQESSQYGSMIPDVVLVRKY---YPRKKKPKSRNWKLKRMNYEEEEPGRKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSV 487
E++ ++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P +
Sbjct: 174 ERLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKI 233
Query: 488 PLDELLADLD 497
++ELL + D
Sbjct: 234 SMEELLDEFD 243
>gi|305380488|gb|ADM49020.1| nonsense-mediated protein [Talaromyces purpurogenus]
Length = 199
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 124/206 (60%), Gaps = 12/206 (5%)
Query: 264 AVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
A SLGN+ PL IC +V SI+LLDP TL+ + + YWR FK+L ++LVE++V+D+
Sbjct: 1 ARSLGNIHPLTICFRVGTSISLLDPTTLQTADVPSAVYWRQPFKNLADVQELVEFVVMDI 60
Query: 324 EVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANN 383
E V ++ LA+ VAR S+ G ND + RTHLG +L+ GD LGY L N
Sbjct: 61 EPVGE----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGGVLHVGDSVLGYHLTGTNF 116
Query: 384 NDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQ 438
ND D + G +P+ +L++K Y K K+ K R+WKL+ + +E ++ + D
Sbjct: 117 NDPNFDAIQESNQYGSTIPDVVLVRKYYARK---KKPKSRNWKLRRMALEEEEPARKQDA 173
Query: 439 EKMNKEYEEFLRDLEENPELRFNISL 464
+++ ++E FLRD+EE+ ELR +SL
Sbjct: 174 DRLEADFEMFLRDIEEDQELRSTLSL 199
>gi|301125090|ref|XP_002909758.1| 60S ribosomal export protein NMD3, putative [Phytophthora infestans
T30-4]
gi|262105249|gb|EEY63301.1| 60S ribosomal export protein NMD3, putative [Phytophthora infestans
T30-4]
Length = 339
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 139/249 (55%), Gaps = 19/249 (7%)
Query: 220 VRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKV 279
+RS+ +L+S + + N + T+SVE+SPIC++DL+ LP K+A S GN+ + +C +
Sbjct: 1 MRSKSSSKLISENVHNATANLQLTYSVELSPICKDDLLVLPRKLAQSCGNISDVTLCART 60
Query: 280 TNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSS----EVNVG-- 333
T + LLDP + + L D+YW+ F L TS +VE++VLDVE V V+VG
Sbjct: 61 TAMVHLLDPVSGQKAELPTDRYWKLPFLPLATSSDMVEFVVLDVEPVDPHELRHVHVGPV 120
Query: 334 -------GSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDM 386
SK+V+AD +VAR SDFG NDT F +RTHLG +L+ GD GYDL +A
Sbjct: 121 ATSGRGCKSKFVVADVEVARESDFGVNDTTFHVRTHLGVVLSAGDTVKGYDLSTAIFGSS 180
Query: 387 ELDKYKGLVLPETILIKKSY-EEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEY 445
+ K LP+ +L++K Y E R RK + KLK+L + + +M E
Sbjct: 181 QTYTLKE-ELPDVVLVRKVYPRENRHRKGDR----KLKTLGASRRGKVSKAETARMEHEM 235
Query: 446 EEFLRDLEE 454
E F + E
Sbjct: 236 EVFTEEFLE 244
>gi|305380546|gb|ADM49046.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 234
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 139/239 (58%), Gaps = 23/239 (9%)
Query: 275 ICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGG 334
+C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 1 LCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE----SK 56
Query: 335 SKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK-- 392
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L +N ND D
Sbjct: 57 GRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPNFDAIHES 116
Query: 393 ---GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFL 449
G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D +++ ++E FL
Sbjct: 117 SQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPARKQDADRLEADFEMFL 173
Query: 450 RDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSVPLDELLADLD 497
RD+EE+ ELR +SLY +N++ +P EMA + ++ P + ++ELL + D
Sbjct: 174 RDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKINMEELLDEFD 232
>gi|305380555|gb|ADM49050.1| nonsense-mediated protein [Talaromyces macrosporus]
Length = 242
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 145/247 (58%), Gaps = 23/247 (9%)
Query: 267 LGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVV 326
LGN+ PL +C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 1 LGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPV 60
Query: 327 SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDM 386
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N ND
Sbjct: 61 GE----SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDP 116
Query: 387 ELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKM 441
D + G ++P+ +L++K +K++K R+WKLK ++ E ++ + D E++
Sbjct: 117 NFDAIQESSQYGSMIPDVVLVRKY---YARKKKAKSRNWKLKRMNYEEEEPGRKQDAERL 173
Query: 442 NKEYEEFLRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSVPLD 490
++E FLRD+EE+ ELR +SLY +N++ +P EMA + ++ P + ++
Sbjct: 174 EADFEMFLRDIEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKINME 233
Query: 491 ELLADLD 497
ELL + D
Sbjct: 234 ELLDEFD 240
>gi|350591690|ref|XP_003483314.1| PREDICTED: 60S ribosomal export protein NMD3-like [Sus scrofa]
Length = 273
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 116/185 (62%), Gaps = 6/185 (3%)
Query: 221 RSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVT 280
R + ++L+S D SN +NYK TFSVEI PIC+++++CL PK+A SLGN+ + +C++VT
Sbjct: 88 RYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVT 147
Query: 281 NSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVV-----SSEVNVGGS 335
+ I L+DP TL+ +D + +W F SL +QL E+IV++ +V S+ +
Sbjct: 148 SVIHLIDPNTLQVADIDGNTFWTHPFNSLCHPKQLEEFIVMECSIVRDLKRSAGAGMISK 207
Query: 336 KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLV 395
K+ L + V + S+ + F RTHLGHLLNPGD LG+DL + N ND ++K K
Sbjct: 208 KHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMKSDR 266
Query: 396 LPETI 400
+P+ +
Sbjct: 267 IPDVV 271
>gi|305380484|gb|ADM49018.1| nonsense-mediated protein [Talaromyces aculeatus]
Length = 236
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 139/240 (57%), Gaps = 23/240 (9%)
Query: 274 VICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVG 333
+C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 2 TLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE----S 57
Query: 334 GSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK- 392
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N ND D +
Sbjct: 58 KGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQE 117
Query: 393 ----GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEF 448
G ++P+ +L++K Y K K+ K R+WKLK ++ E ++ + D E++ ++E F
Sbjct: 118 SSQYGSMIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDAERLEADFEMF 174
Query: 449 LRDLEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSVPLDELLADLD 497
LRD+EE+ +LR +SLY +N++ +P EMA + ++ P + +D+LL + D
Sbjct: 175 LRDIEEDQDLRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKINMDKLLDEFD 234
>gi|305380505|gb|ADM49027.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 232
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 136/237 (57%), Gaps = 23/237 (9%)
Query: 277 MKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSK 336
+V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V +
Sbjct: 1 FRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE----SKGR 56
Query: 337 YVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK---- 392
+ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N ND D +
Sbjct: 57 FFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQESSQ 116
Query: 393 -GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRD 451
G +P+ +L++K Y K K+ K R+WKLK ++ E ++ + D E++ ++E FLRD
Sbjct: 117 YGSTIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDAERLEADFEMFLRD 173
Query: 452 LEENPELRFNISLY--RNKDYQPS---------EMASVTDGEDVPSVPLDELLADLD 497
+EE+ ELR +SLY +N++ +P EMA + ++ P + ++ELL + D
Sbjct: 174 IEEDQELRSTLSLYKAKNENRRPEKMDVVEEQDEMADDSSEDEAPKISMEELLDEFD 230
>gi|392339482|ref|XP_003753822.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal export protein
NMD3-like [Rattus norvegicus]
gi|392346353|ref|XP_003749529.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal export protein
NMD3-like [Rattus norvegicus]
Length = 450
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 135/496 (27%), Positives = 230/496 (46%), Gaps = 52/496 (10%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+LC +CG ++ + N+CV CL +VD + G+ K ++I C +C Y Q P TW + L
Sbjct: 2 ILCYECGSTISLSPVNICVVCLXKQVDSSXGILKQLLIPFCKQCQGYFQSPETWAQCAL- 60
Query: 77 SKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
E + C+K++K L++ LV A F+W EP + +EV+NG IL+ +V +Y
Sbjct: 61 --EFIVLCLKKIKVPLSKGELVGAGFVWVEP-------LIGYSEEVMNGVILQXVFVPDY 111
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
V MC R +A D A +++ Q + ++ YLEQLIL + I ++
Sbjct: 112 VILFQMCVDFHRAKAK-DYXKAEIEIEQKMAQKKILHYLEQLILNXGMHHNTLHIKEIHD 170
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT-FSVEISPICRE 254
G D + ++ +K + F+ + P R + ++L+S D SN +N K T S+EI + +
Sbjct: 171 GPDCYSSSKQCVLK-IXFLQCMVPSRYKTSRRLISQDIYSNTYNSKNTPHSIEIV-LTFK 228
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
D IC + LGNL + +C++VT I L+DP + +DA +W S ++
Sbjct: 229 DNIC---QSWYHLGNLKXVCMCIRVT--IYLIDPNXVAD--IDASDFWSHLVDSPWHRKR 281
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYAL 374
L E ++ E+ S +L Q + + + P ++
Sbjct: 282 LEEXFIVKGCSTVXELKCSASFGML--VQKCYMEEVCPS--------------TPWGPSV 325
Query: 375 GYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKG 434
G+DL + N ND + K V + I Y K+ R + K ++
Sbjct: 326 GFDLVNCNVNDDHVSKMNXRV-SDVI-----YXSKKARTVLDQHCMRXKLKELATHRENM 379
Query: 435 RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLA 494
D+ K+ Y+ FL D ++ +R N++ YR+ P E S T+ ++P + E+L
Sbjct: 380 DLDEXKI---YQGFLED-HKDEAIRKNVNSYRDSAI-PVE--SDTEHGNMPELGQVEMLK 432
Query: 495 DLDLKSD-DGEGDDSM 509
+ + D GE SM
Sbjct: 433 NPQISQDATGEEGASM 448
>gi|305380516|gb|ADM49032.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 207
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 127/213 (59%), Gaps = 14/213 (6%)
Query: 275 ICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGG 334
+C +V SI+LLDP TL+ + A YWR FK+L ++LVE++V+D+E V
Sbjct: 1 LCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE----SK 56
Query: 335 SKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK-- 392
++ LA+ VAR S+ G ND + RTHLG +L+ GD +GY L N ND D +
Sbjct: 57 GRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQES 116
Query: 393 ---GLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFL 449
G +P+ +L++K Y K K+ K R+WKLK ++ E ++ + D E++ ++E FL
Sbjct: 117 SQYGSTIPDVVLVRKYYARK---KKPKSRNWKLKRMNYEEEEPGRKQDAERLEADFEMFL 173
Query: 450 RDLEENPELRFNISLY--RNKDYQPSEMASVTD 480
RD+EE+ ELR +SLY +N++ +P +M V +
Sbjct: 174 RDIEEDQELRSTLSLYKAKNENRRPEKMDVVEE 206
>gi|308466664|ref|XP_003095584.1| hypothetical protein CRE_14247 [Caenorhabditis remanei]
gi|308245108|gb|EFO89060.1| hypothetical protein CRE_14247 [Caenorhabditis remanei]
Length = 379
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 90/126 (71%), Gaps = 1/126 (0%)
Query: 12 QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71
QTVG + CC+ G+ + PN ANMC CLRS VDITEG+Q+ I C CD Y PP W+
Sbjct: 234 QTVGLMACCEYGVAIEPNPANMCSGCLRSRVDITEGIQRSCTIYMCKFCDRYFVPPSAWM 293
Query: 72 KAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
+A+LES+ELL+ C+K+LK L +VRL +A F+W+E HSK IKVK+ +QKEV IL+Q+
Sbjct: 294 RAELESRELLSICLKKLKPMLTKVRLTDACFVWSEAHSKHIKVKITIQKEVFTNTILQQA 353
Query: 131 YVVEYV 136
VVE+
Sbjct: 354 VVVEFT 359
>gi|378756769|gb|EHY66793.1| hypothetical protein NERG_00433 [Nematocida sp. 1 ERTm2]
Length = 445
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/428 (28%), Positives = 191/428 (44%), Gaps = 51/428 (11%)
Query: 19 CCKCGIPMAPNAANMCVACLRSE-----VDITEGLQKHVIISHCPECDCYLQPPRTWIKA 73
CC CG + +MC C E VD + + C C Y PP W
Sbjct: 3 CCLCGTE-SMFETSMCFECTVRELPKLNVDTSRE------VDRCSTCMRYSVPPSGWTTL 55
Query: 74 QLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV---LNGAILEQS 130
+ E E+L + +K++ L +++LV+A FI +E HSKR+++K+ + + + G +
Sbjct: 56 RFEGPEMLAYLLKKIPELAKLKLVDAYFIHSEEHSKRVRMKVSIDRTSEMDIFGLEHAEE 115
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ +V + C C+R +N W VQLRQ ++T LEQ ILK I
Sbjct: 116 LDITWVIKGKHCLDCARAASN-QTWNCVVQLRQKCQSKQTLLLLEQAILKAGLHEETTDI 174
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
GIDFF+ +R+ ++K V F+ + AP + + +QLV D KSNN YK+ +SVEI
Sbjct: 175 KGEQDGIDFFYISRTASLKLVRFIEEYAPAKVKISEQLVKLDKKSNNSRYKFAYSVEIPA 234
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
+ DL+ LP + L +L + + ++++ SI L D + + + +L
Sbjct: 235 LNVNDLVYLPDTLGKKL-SLTDMCVVLRISKSILLADSKGQVKDLGRIEYFKYARAMRVL 293
Query: 311 TS---RQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFG----------KNDTIF 357
S ++ E I +D + + S+++ DA +FG KND
Sbjct: 294 GSSKAQRSFEVIEVDGKGIPSKMDETAK-----DAAPGMQLNFGKNRIYDVVLLKNDGEM 348
Query: 358 SIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKP 417
L L GD +GYDL + N N +E+D L+KK E
Sbjct: 349 VNAKTLVKGLGAGDRVIGYDLMNLNTN-LEID-------ASIFLLKKESE--------VS 392
Query: 418 RSWKLKSL 425
WK+K L
Sbjct: 393 SKWKIKRL 400
>gi|361127637|gb|EHK99598.1| putative 60S ribosomal export protein NMD3 [Glarea lozoyensis
74030]
Length = 352
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 132/224 (58%), Gaps = 20/224 (8%)
Query: 286 LDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVA 345
L+ L+H + A YWR+ F +L ++LVE+IV+D+E + + K++LA+A VA
Sbjct: 128 LEQLILKHD-ISAPIYWRAPFSTLADVQELVEFIVMDIEPIGGQ----KGKWLLAEATVA 182
Query: 346 RVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETI 400
R SD G ND + RTHLG++L+PGD +GY L N N + D + +P+ +
Sbjct: 183 RASDLGSNDKTYYTRTHLGNVLHPGDSVMGYMLTGTNFNSPQYDALEESNTYSSQIPDVL 242
Query: 401 LIKKSYEEKRLRKRSKPRSWKLKSLDMEVDD-SKGRTDQEKMNKEYEEFLRDLEENPELR 459
L+KK Y KR +SK R+W+LK ++ + D + DQEK++ +YE FLRD+EE+ ELR
Sbjct: 243 LVKKFYARKR---KSKNRNWRLKRMNRDDGDLLPKKADQEKLDNDYEMFLRDVEEDAELR 299
Query: 460 FNISLYR-----NKDYQPSEMASVTDGED-VPSVPLDELLADLD 497
++LY+ +D + +A D +D P V ++ELL + D
Sbjct: 300 ATMALYKEQQQAKRDAEAMSVAETDDADDETPKVNMEELLDEFD 343
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 65 QPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNG 124
Q TWI A LES+ELL C+K+L+ L++VR+++A FIWTEPHS+R+KVKL +Q V G
Sbjct: 20 QTNATWIVAALESRELLALCLKKLRGLHKVRIIDASFIWTEPHSRRVKVKLTIQDSVSEG 79
Query: 125 AILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAA 184
+L+Q++ VEYV C C++ + W A VQ+RQ V H+RTF YLEQLILKHD +
Sbjct: 80 VVLQQAFEVEYVVAYQQCPDCAK-SYTANTWRACVQVRQKVPHKRTFLYLEQLILKHDIS 138
Query: 185 A 185
A
Sbjct: 139 A 139
>gi|387594352|gb|EIJ89376.1| hypothetical protein NEQG_00146 [Nematocida parisii ERTm3]
gi|387596804|gb|EIJ94425.1| hypothetical protein NEPG_01093 [Nematocida parisii ERTm1]
Length = 495
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 17/277 (6%)
Query: 19 CCKCGIPMAPNAANMCVACLRSE-----VDITEGLQKHVIISHCPECDCYLQPPRTWIKA 73
CC CG + + MC C E +D T + + C C Y PP W
Sbjct: 3 CCLCGSESMFDTS-MCYECTVRELPKLSIDTTREVDR------CGTCMRYSVPPSGWTTL 55
Query: 74 QLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEV-LNGAILEQSYV 132
+ E E+L + +K++ L R++LV+A FI +E HSKR+++++ + + LN +E S
Sbjct: 56 RFEGPEMLAYLLKKVPELARMKLVDAYFIHSEEHSKRVRMRISIDRTGELNMCSVEYSQE 115
Query: 133 VE--YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+E +V + C C+R +N W VQLRQ ++T LEQ ILK I
Sbjct: 116 LEIMWVIKGKHCLDCARAASN-QTWNCVVQLRQKSELKQTLLLLEQSILKAGLHEECTDI 174
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
GIDFF+ +R+ +K V F+ + P + + +QLV D KSNN YK+ +SVEI
Sbjct: 175 KGEQDGIDFFYMSRTACLKLVRFIEESVPTKVKSSEQLVKLDKKSNNSRYKFAYSVEIPA 234
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLD 287
+ DL+ +P + L +L + I ++++ S+ L D
Sbjct: 235 LNLNDLLYVPVPLCKKL-SLTEMCIVLRISKSVLLAD 270
>gi|305380491|gb|ADM49021.1| nonsense-mediated protein [Talaromyces purpurogenus]
Length = 186
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 116/193 (60%), Gaps = 12/193 (6%)
Query: 282 SIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLAD 341
SI+LLDP TL+ + + YWR FK+L ++LVE++V+D+E V ++ LA+
Sbjct: 1 SISLLDPTTLQTADVPSAVYWRQPFKNLADVQELVEFVVMDIEPVGE----SKGRFFLAE 56
Query: 342 AQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVL 396
VAR S+ G ND + RTHLG +L+ GD LGY L N ND D + G +
Sbjct: 57 ITVARASEMGVNDNTYFTRTHLGGVLHVGDSVLGYHLTGTNFNDPNFDAIQESNQYGSTI 116
Query: 397 PETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENP 456
P+ +L++K Y K K+ K R+WKL+ + +E ++ + D +++ ++E FLRD+EE+
Sbjct: 117 PDVVLVRKYYARK---KKPKSRNWKLRRMALEEEEPARKQDADRLEADFEMFLRDIEEDQ 173
Query: 457 ELRFNISLYRNKD 469
ELR +SLY+ K+
Sbjct: 174 ELRSTLSLYKAKN 186
>gi|305380559|gb|ADM49052.1| nonsense-mediated protein [Talaromyces sp. LCP 4224]
Length = 222
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 23/227 (10%)
Query: 287 DPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVAR 346
DP TL+ + A YWR FK+L ++LVE++V+D+E V ++ LA+ VAR
Sbjct: 1 DPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE----SKGRFFLAEITVAR 56
Query: 347 VSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETIL 401
S+ G ND + RTHLG +L+ GD +GY L N ND D + G +P+ +L
Sbjct: 57 ASEMGINDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQESSQYGSTIPDVVL 116
Query: 402 IKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFN 461
++K Y K K+ K R+WKLK ++ E ++ + D E++ ++E FLRD+EE+ ELR
Sbjct: 117 VRKFYARK---KKGKSRNWKLKRMNYEEEEPGRKQDAERLEADFEMFLRDIEEDQELRST 173
Query: 462 ISLY--RNKDYQPSEMASVTD---------GEDVPSVPLDELLADLD 497
+SLY +N++ +P +M V + ++ P + ++ELL + D
Sbjct: 174 LSLYKAKNENRRPEKMDVVEEQDEMDDDSSEDEAPKINMEELLDEFD 220
>gi|305380527|gb|ADM49037.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 193
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 114/190 (60%), Gaps = 12/190 (6%)
Query: 285 LLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQV 344
LLDP TL+ + A YWR FK+L ++LVE++V+D+E V ++ LA+ V
Sbjct: 1 LLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE----SKGRFFLAEITV 56
Query: 345 ARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPET 399
AR S+ G ND + RTHLG +L+ GD +GY L +N ND D G ++P+
Sbjct: 57 ARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPNFDAIHESSQYGSMIPDV 116
Query: 400 ILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELR 459
+L++K Y K K+ K R+WKLK ++ E ++ + D +++ ++E FLRD+EE+ ELR
Sbjct: 117 VLVRKYYARK---KKPKSRNWKLKRMNYEEEEPARKQDADRLEADFEMFLRDIEEDQELR 173
Query: 460 FNISLYRNKD 469
+SLY+ K+
Sbjct: 174 STLSLYKAKN 183
>gi|305380540|gb|ADM49043.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 186
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 110/182 (60%), Gaps = 14/182 (7%)
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR 360
YWR FK+L ++LVE++V+D+E V ++ LA+ VAR S+ G ND + R
Sbjct: 9 YWRQPFKNLADVQELVEFVVMDIEPVGE----SKGRFFLAEITVARASEMGVNDNTYFTR 64
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRS 415
THLG +L+ GD +GY L +N ND D G ++P+ +L++K Y K K+
Sbjct: 65 THLGGILHVGDSVMGYHLTGSNFNDPNFDAIHESSQYGSMIPDVVLVRKYYARK---KKP 121
Query: 416 KPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPS 473
K R+WKLK ++ E ++ + D +++ ++E FLRD+EE+ ELR +SLY +N++ +P
Sbjct: 122 KSRNWKLKRMNYEEEEPARKQDADRLEADFEMFLRDIEEDQELRSTLSLYKAKNENRRPE 181
Query: 474 EM 475
+M
Sbjct: 182 KM 183
>gi|397570210|gb|EJK47192.1| hypothetical protein THAOC_34108 [Thalassiosira oceanica]
Length = 625
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 142/283 (50%), Gaps = 45/283 (15%)
Query: 196 GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
G DF+F + A FV ++ VAP+R++ + LVS D K+N N K+T + ++ P+CR+D
Sbjct: 263 GFDFYFPSLDKARHFVNYLQGVAPMRTKTTQSLVSADSKNNTANIKHTLNCDMVPLCRDD 322
Query: 256 LICLPPKVAVSLGNLGPLVICMKVTNSIALLDP-------FTLRHCFLDADQYWRS---- 304
LI + K G G L + ++V++ + L+D + R + +D YWR
Sbjct: 323 LIVVERKARGVGGLSGRLCLVLRVSSVVHLVDASPARDAEVSTRFADMHSDAYWRGGEDK 382
Query: 305 SFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSK------------YVLADAQVARVSDFGK 352
S++ L+ ++L ++VLDVE+ GG++ + LAD +VAR SDFG
Sbjct: 383 SYRLFLSPKRLARFVVLDVELCD-----GGARSGKDGGGAGAAKFALADVEVARESDFGV 437
Query: 353 NDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKG-----LVLPETILIKKSYE 407
D F THLGHLLN GD LGYDL S + +G V+P+ +
Sbjct: 438 TDETFRCVTHLGHLLNVGDVVLGYDLVSTVLSGTAESSSEGSFNSNFVMPD--------D 489
Query: 408 EKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLR 450
E +L+K + + +S + D + R +Q+K + E R
Sbjct: 490 ESKLKK----KGGRARSAASKKRDRRNRKEQQKQRRLAEAASR 528
>gi|449707072|gb|EMD46794.1| nonsense-mediated mRNA decay protein, putative, partial [Entamoeba
histolytica KU27]
Length = 136
Score = 122 bits (305), Expect = 5e-25, Method: Composition-based stats.
Identities = 52/122 (42%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
+P+ +LCC CG + N ++MC CL +DITEG+ K + I C C +L T
Sbjct: 15 LPERKAEMLCCVCGALIEVNPSSMCANCLHKTIDITEGIPKQITIDQCKRCKKFLAGT-T 73
Query: 70 WIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQ 129
W + ES+EL+T+ +KR+K LN+++L+NA +IWTE HSKR+K+KL V+KEV +++Q
Sbjct: 74 WFYCEPESRELMTYLIKRVKGLNKLKLINASYIWTEEHSKRLKIKLTVEKEVFKNTVIQQ 133
Query: 130 SY 131
+
Sbjct: 134 DF 135
>gi|305380494|gb|ADM49022.1| nonsense-mediated protein [Talaromyces purpurogenus]
Length = 170
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 12/169 (7%)
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR 360
YWR FK+L ++LVE++V+D+E V ++ LA+ VAR S+ G ND + R
Sbjct: 7 YWRQPFKNLADVQELVEFVVMDIEPVGE----SKGRFFLAEITVARASEMGVNDNTYFTR 62
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRS 415
THLG +L+ GD LGY L N ND D + G +P+ +L++K Y K K+
Sbjct: 63 THLGGVLHVGDSVLGYHLTGTNFNDPNFDAIQESNQYGSTIPDVVLVRKYYARK---KKP 119
Query: 416 KPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISL 464
K R+WKL+ + +E ++ + D +++ ++E FLRD+EE+ ELR +SL
Sbjct: 120 KSRNWKLRRMALEEEEPARKQDADRLEADFEMFLRDIEEDQELRSALSL 168
>gi|305380531|gb|ADM49039.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 161
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 12/168 (7%)
Query: 301 YWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIR 360
YWR FK+L ++LVE++V+D+E V ++ LA+ VAR S+ G ND + R
Sbjct: 1 YWRQPFKNLADVQELVEFVVMDIEPVGE----SKGRFFLAEITVARASEMGVNDNTYFTR 56
Query: 361 THLGHLLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRS 415
THLG +L+ GD +GY L +N ND D G ++P+ +L++K Y K K+
Sbjct: 57 THLGGILHVGDSVMGYHLTGSNFNDPNFDAIHESSQYGSMIPDVVLVRKYYARK---KKP 113
Query: 416 KPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNIS 463
K R+WKLK ++ E ++ + D +++ ++E FLRD+EE+ ELR +S
Sbjct: 114 KSRNWKLKRMNYEEEEPARKQDADRLEADFEMFLRDIEEDQELRSTLS 161
>gi|305380535|gb|ADM49041.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 171
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 105/176 (59%), Gaps = 14/176 (7%)
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
FK+L ++LVE++V+D+E V ++ LA+ VAR S+ G ND + RTHLG
Sbjct: 3 FKNLADVQELVEFVVMDIEPVGE----SKGRFFLAEITVARASEMGVNDNTYFTRTHLGG 58
Query: 366 LLNPGDYALGYDLYSANNNDMELDKYK-----GLVLPETILIKKSYEEKRLRKRSKPRSW 420
+L+ GD +GY L +N ND D G ++P+ +L++K Y K K+ K R+W
Sbjct: 59 ILHVGDSVMGYHLTGSNFNDPNFDAIHESSQYGSMIPDVVLVRKYYARK---KKPKSRNW 115
Query: 421 KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLY--RNKDYQPSE 474
KLK ++ E ++ + D +++ ++E FLRD+EE+ LR +SL+ +N++ +P E
Sbjct: 116 KLKRMNYEEEEPARKQDADRLEADFEMFLRDIEEDQGLRSTLSLHKAKNENRRPEE 171
>gi|307169026|gb|EFN61877.1| 60S ribosomal export protein NMD3 [Camponotus floridanus]
Length = 120
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 74/98 (75%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
LCC+CG + PN ANMCV CLR+ VDITEG+ K + C C+ YLQPP WI A LES
Sbjct: 11 LCCECGTLIEPNPANMCVVCLRNHVDITEGIPKQATLQFCKGCERYLQPPAEWIHAALES 70
Query: 78 KELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKL 115
+ELL+ C+K+LK LNRV+L++A F+WTEPHSKR+KV
Sbjct: 71 RELLSLCLKKLKGLNRVKLIDAGFVWTEPHSKRLKVNF 108
>gi|349602939|gb|AEP98922.1| 60S ribosomal export protein NMD3-like protein, partial [Equus
caballus]
Length = 185
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 103/175 (58%), Gaps = 13/175 (7%)
Query: 336 KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLV 395
K+ L + V + S+ + F RTHLGHLLNPGD LG+DL + N ND ++K
Sbjct: 21 KHTLGEVWVQKTSEMNTDKQYF-CRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDR 79
Query: 396 LPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEEN 455
+P+ +LIKKSY+ KR + R+WKLK L E ++ TD E ++Y++FL DLEE+
Sbjct: 80 VPDVVLIKKSYDRT---KRQRRRNWKLKELPRERENMD--TDDE---RQYQDFLEDLEED 131
Query: 456 PELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSD-DGEGDDSM 509
+R N+++YR+ P E S TD E P + L E+L DL + D GE DSM
Sbjct: 132 EAIRKNVNVYRDSTI-PVE--SDTDDEGAPRISLAEMLEDLHISQDATGEEGDSM 183
>gi|147852319|emb|CAN82227.1| hypothetical protein VITISV_011876 [Vitis vinifera]
Length = 359
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 61/81 (75%)
Query: 342 AQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETIL 401
++V DFGKNDTIF+I THLGH LNPGDYALGYDLY+AN+NDMEL+KY+ VLP+ IL
Sbjct: 40 SEVDITEDFGKNDTIFNIPTHLGHYLNPGDYALGYDLYAANSNDMELEKYRYFVLPDAIL 99
Query: 402 IKKSYEEKRLRKRSKPRSWKL 422
IKK Y E RK KP L
Sbjct: 100 IKKIYVENCQRKGGKPPELSL 120
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 1 MAQDAGMFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCP-E 59
MAQ++ MF TVG VLCCKCGIP+ PNAA+MCV CL SEVDITE K+ I + P
Sbjct: 1 MAQESSMFRGHPTVGRVLCCKCGIPIVPNAASMCVKCLSSEVDITEDFGKNDTIFNIPTH 60
Query: 60 CDCYLQP 66
YL P
Sbjct: 61 LGHYLNP 67
>gi|149414089|ref|XP_001507475.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Ornithorhynchus anatinus]
Length = 164
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 14/175 (8%)
Query: 337 YVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVL 396
+ LA+ V + S+ ++ F RTH+GHLLNPGD LG+DL + N ND +K +
Sbjct: 1 HTLAEVWVQKTSEMNTDNQYF-CRTHMGHLLNPGDLVLGFDLANCNLNDEFANKMNPNHV 59
Query: 397 PETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENP 456
P+ +LIKKSY+ KR + R+WKLK L E D TD E ++Y++FL DLEE+
Sbjct: 60 PDVVLIKKSYDRT---KRQRRRNWKLKEL--ERDREGMDTDDE---RQYQDFLEDLEEDE 111
Query: 457 ELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSD--DGEGDDSM 509
+R N+++Y+N + P E S TD E P + L E+L DL + D GEG + M
Sbjct: 112 AIRRNVNIYKNLEV-PVE--SDTDDEGAPRISLAEMLEDLHISHDATGGEGAEMM 163
>gi|70953092|ref|XP_745669.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526066|emb|CAH77946.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 385
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Query: 167 HRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDK 226
H++T +LE L+LK I I G+DF F +R+ A+KF +F+ + ++ K
Sbjct: 1 HKKTLLFLESLLLKSQMNENIINIVSNPDGLDFHFLSRTDALKFCDFILSKTMAKCKNSK 60
Query: 227 QLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALL 286
L++HD +NN+NY Y+FS++I PIC+ DLI P A+ G +CM V+ I L+
Sbjct: 61 HLINHDA-NNNYNYLYSFSIDICPICKHDLIFFPKNFAIKYGIKSTFYLCMHVSIYIILV 119
Query: 287 DPF-TLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSE 329
DPF + ++ ++Y + F SLL ++VL+VE +SSE
Sbjct: 120 DPFGAANNVYISQERYNKYPFLSLLNKNDAKSFLVLNVEHISSE 163
>gi|222641016|gb|EEE69148.1| hypothetical protein OsJ_28274 [Oryza sativa Japonica Group]
Length = 311
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 7 MFTVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66
MF QTVG+VLCC G+ M PN ANMC C+R+ V+I EG+ H + +CP+C YLQP
Sbjct: 14 MFMPTQTVGTVLCCIYGVAMQPNPANMCTRCIRAGVNIIEGVPSHAAV-YCPDCTSYLQP 72
Query: 67 PRTWIKAQLESKELLTFCVKRLKNLNR 93
PR+W++A ES EL+ L+ LNR
Sbjct: 73 PRSWLRAAPESPELMQIL---LRGLNR 96
>gi|422293348|gb|EKU20648.1| nonsense-mediated mrna decay protein, partial [Nannochloropsis
gaditana CCMP526]
Length = 87
Score = 97.1 bits (240), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 94 VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPD 153
+ +V A +IWTEPHSKR+K+KL V+KEVLNG +++Q E+V + CD+C+ +
Sbjct: 1 MEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACA-LSYTEQ 59
Query: 154 QWVAAVQLRQHVTHRRTFFYLEQLIL 179
W A QLRQ VTH+RTFF+LEQL+L
Sbjct: 60 AWKAVCQLRQRVTHKRTFFFLEQLLL 85
>gi|255952737|ref|XP_002567121.1| Pc21g00470 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588832|emb|CAP94944.1| Pc21g00470 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 98
Score = 88.6 bits (218), Expect = 7e-15, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 52/68 (76%)
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LESKELL C+++L+ LN+VR+++A FIWTEPHSKR++VK+ +Q E G I++Q + VE
Sbjct: 2 LESKELLAICLRKLRGLNKVRIIDASFIWTEPHSKRLRVKITIQTEAFQGTIVQQQFEVE 61
Query: 135 YVQQDHMC 142
YV + C
Sbjct: 62 YVVANQQC 69
>gi|297739634|emb|CBI29816.3| unnamed protein product [Vitis vinifera]
Length = 78
Score = 79.7 bits (195), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 1 MAQDAGMFTVP-QTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVII 54
+A+++ MF V QT+G V CCKCGIP AP AANMCV CL SEVDI EGLQKH +
Sbjct: 19 VARESSMFRVHHQTIGRVPCCKCGIPTAPTAANMCVNCLPSEVDIPEGLQKHATL 73
>gi|449702985|gb|EMD43514.1| nonsense-mediated mRNA decay protein, putative [Entamoeba
histolytica KU27]
Length = 135
Score = 78.6 bits (192), Expect = 7e-12, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 9/138 (6%)
Query: 274 VICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVG 333
++C +V ++ L+D L A Q+++ F +L S+ LVEY V++V + V
Sbjct: 1 MVCTQVAGTLHLVDVLKGTEVELYAHQFFQHPFDALTNSKNLVEYYVVEVTKIGKPV--- 57
Query: 334 GSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDL--YSANNNDMELDKY 391
+Y LAD Q+ + DFG + ++T G+ + G+ ALGYDL +ANN++ E +
Sbjct: 58 -GQYQLADCQIIKSEDFGVTEDYLYVKTIFGNTIREGETALGYDLVNLNANNDNFESYQQ 116
Query: 392 KGL---VLPETILIKKSY 406
+GL LPE ILI + +
Sbjct: 117 RGLEEGTLPEVILIGRGH 134
>gi|392585330|gb|EIW74670.1| hypothetical protein CONPUDRAFT_159961 [Coniophora puteana
RWD-64-598 SS2]
Length = 498
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%)
Query: 220 VRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKV 279
++S+ +QL+S D +S+ NYK+ +SVEI+PIC +LIC+PPK A L N+ PL IC +
Sbjct: 127 MKSKSTEQLLSTDSRSDTANYKFAYSVEIAPICENNLICIPPKQAKQLSNMSPLTICTHI 186
Query: 280 TNSIALLDPFTLRHCFLDADQYWRS 304
+ S+ L D TL++ + A + S
Sbjct: 187 STSLQLTDLATLQNIKVTAVHHHAS 211
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 54 ISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKV 113
+ H C+ L P+ W Q ES++LL C+K+LK ++VRL + FIWTEP SKR+KV
Sbjct: 54 LQHLSFCEHSLSLPQAWTLVQPESQQLLAICLKKLKGFHKVRLTDMHFIWTEPRSKRLKV 113
Query: 114 KLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCS 146
VQK VL +++ + + D D+ +
Sbjct: 114 SPMVQKAVLTNTVMKSKSTEQLLSTDSRSDTAN 146
>gi|383162666|gb|AFG63996.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162668|gb|AFG63997.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162670|gb|AFG63998.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162672|gb|AFG63999.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162674|gb|AFG64000.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162676|gb|AFG64001.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162678|gb|AFG64002.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162680|gb|AFG64003.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162682|gb|AFG64004.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162684|gb|AFG64005.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162686|gb|AFG64006.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162688|gb|AFG64007.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162690|gb|AFG64008.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162692|gb|AFG64009.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162694|gb|AFG64010.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162696|gb|AFG64011.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162698|gb|AFG64012.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162700|gb|AFG64013.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
Length = 75
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 49/59 (83%)
Query: 440 KMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDL 498
K ++YE+FL +LEE+ E+R I+LYRN++YQ ++ AS+TDGEDVPSVPLDELL DL L
Sbjct: 5 KEGEDYEKFLDELEEDQEMRSKIALYRNENYQRADTASMTDGEDVPSVPLDELLGDLTL 63
>gi|344245933|gb|EGW02037.1| Histone H3.3 [Cricetulus griseus]
Length = 365
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 225 DKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIA 284
D V +P S K T E ++++CL PK+A SLGN+ + IC++VT++I
Sbjct: 153 DAGFVWTEPHSKRLKVKLTIQKE------DNVVCLSPKLAQSLGNMSQICICIRVTSAIH 206
Query: 285 LLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYV 338
L+DP TL+ +D + +W F SL +QL E+IV++ +V G+ +
Sbjct: 207 LIDPNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVMECSIVRDLKRSAGAGII 260
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 22/121 (18%)
Query: 395 VLPETILIKKSYEEKRLRKRSKPRSWKLKSL-----DMEVDDSKGRTDQEKMNKEYEEFL 449
++ + +LIKKSY+ KR + R+WKLK L DM+ DD ++Y++FL
Sbjct: 259 IISKKVLIKKSYDRT---KRQRRRNWKLKELARDREDMDTDD----------ERQYQDFL 305
Query: 450 RDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSD-DGEGDDS 508
DLEE+ +R N+++YR+ P E S TD E P + L E+L DL + D GE S
Sbjct: 306 EDLEEDEAIRKNVNIYRDSTV-PVE--SDTDDEGAPRISLAEMLEDLHISQDATGEEGAS 362
Query: 509 M 509
M
Sbjct: 363 M 363
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 29/32 (90%)
Query: 89 KNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE 120
++ N+VRLV+A F+WTEPHSKR+KVKL +QKE
Sbjct: 144 RDANKVRLVDAGFVWTEPHSKRLKVKLTIQKE 175
>gi|361066521|gb|AEW07572.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
Length = 75
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 48/59 (81%)
Query: 440 KMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDL 498
K ++YE+FL +LEE+ E+R I+LYRN++YQ + AS+TDGEDVPSVPLDELL DL L
Sbjct: 5 KEGEDYEKFLDELEEDQEMRSKIALYRNENYQRVDTASMTDGEDVPSVPLDELLGDLTL 63
>gi|349806117|gb|AEQ18531.1| putative 60s ribosomal export protein nmd3 [Hymenochirus curtipes]
Length = 163
Score = 75.5 bits (184), Expect = 7e-11, Method: Composition-based stats.
Identities = 63/172 (36%), Positives = 93/172 (54%), Gaps = 25/172 (14%)
Query: 335 SKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGL 394
+K+ LA+A V + S+ + RTHLGHLLN GD +G+ L + N ND ++ +
Sbjct: 10 NKHTLAEAWVQKTSEMNTFQQ-YHCRTHLGHLLNVGDLGMGF-LANCNLNDEYINMNQHH 67
Query: 395 VLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEE 454
+ P+ +LIKK KR R+R++ M+ DD + +Y++FL DLEE
Sbjct: 68 I-PDVVLIKKYDRTKRQRRRNE---------GMDTDDER----------QYQDFLEDLEE 107
Query: 455 NPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDLKSDDGEGD 506
+ LR NI++YRN + P E S TD E P + L E+L DL + D GD
Sbjct: 108 DELLRKNINIYRNANV-PVE--SDTDEEGAPRISLAEMLEDLHISQDATGGD 156
>gi|45736103|dbj|BAD13134.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 162
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 26 MAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCV 85
M PN ANMC C+R+ V+I EG+ +H + +CP+C YLQPPR+W++A ES EL+
Sbjct: 1 MQPNPANMCTRCIRAGVNIIEGVPRHAAV-YCPDCTSYLQPPRSWLRAAPESPELMQIL- 58
Query: 86 KRLKNLNR 93
L+ LNR
Sbjct: 59 --LRGLNR 64
>gi|449703243|gb|EMD43728.1| nonsense-mediated mRNA decay protein, putative [Entamoeba
histolytica KU27]
Length = 140
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 16/144 (11%)
Query: 274 VICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVG 333
++C +V ++ L+D L A Q+++ F +L S+ LVEY V++V + V
Sbjct: 1 MVCTQVAGTLHLVDVLKGTEVELYAHQFFQHPFDALTNSKNLVEYYVVEVTKIGKPV--- 57
Query: 334 GSKYVLADAQVARVSDFGKND------TIFSIRTHLGHLLNPGDYALGYDL--YSANNND 385
+Y LAD Q+ + DFG + TIF +T G+ + G+ ALGYDL +ANN++
Sbjct: 58 -GQYQLADCQIIKSEDFGVTEDYLYVKTIFG-KTIFGNTIREGETALGYDLVNLNANNDN 115
Query: 386 MELDKYKGL---VLPETILIKKSY 406
E + +GL LPE ILI + +
Sbjct: 116 FESYQQRGLEEGTLPEVILIGRGH 139
>gi|170058465|ref|XP_001864933.1| NMD protein [Culex quinquefasciatus]
gi|167877565|gb|EDS40948.1| NMD protein [Culex quinquefasciatus]
Length = 294
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 85/187 (45%), Gaps = 32/187 (17%)
Query: 210 FVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVA-VSLG 268
V+FV V PV+ + K+L+ HD SN++NYKY++ + + P + ++CL K A V +
Sbjct: 88 LVDFVQAVLPVKVTNAKKLIPHDIHSNSYNYKYSYELHVVPFSKGSIVCLRKKAAEVPVA 147
Query: 269 NLGPLVICMKVTNSIALLDPFTLRHCFLDAD-QYWRSSFKSLLTS--RQLVEYIVLDVEV 325
+L H +D ++ R S K L + +VE++V D+E+
Sbjct: 148 HLA--------------------YHQSGQSDLRFRRISLKESLETIGGHMVEFVVTDMEI 187
Query: 326 VSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNND 385
K V+ F R HLGHLL GD LGYDL ANNN+
Sbjct: 188 DRDN----KKKNFPRQGPVS----FRNCPNWAHTRAHLGHLLKVGDSVLGYDLAEANNNN 239
Query: 386 MELDKYK 392
+K K
Sbjct: 240 GNFEKLK 246
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 15/79 (18%)
Query: 34 CVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNR 93
CV CLR+ VDIT + K I+ YL PP W++ LESKELL
Sbjct: 9 CVTCLRTHVDITANIPKQAIVFCGRNWVRYLNPPSEWVQCSLESKELL------------ 56
Query: 94 VRLVNAEFIWTEPHSKRIK 112
V+A FIWTEPHSKRIK
Sbjct: 57 ---VDAGFIWTEPHSKRIK 72
>gi|170054659|ref|XP_001863230.1| nonsense-mediated mRNA decay protein [Culex quinquefasciatus]
gi|167874917|gb|EDS38300.1| nonsense-mediated mRNA decay protein [Culex quinquefasciatus]
Length = 297
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 85/187 (45%), Gaps = 32/187 (17%)
Query: 210 FVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVA-VSLG 268
V+FV V PV+ + K+L+ HD SN++NYKY++ + + P + ++CL K A V +
Sbjct: 91 LVDFVQAVLPVKVTNAKKLIPHDIHSNSYNYKYSYELHVVPFSKGSIVCLRKKAAEVPVA 150
Query: 269 NLGPLVICMKVTNSIALLDPFTLRHCFLDAD-QYWRSSFKSLLTS--RQLVEYIVLDVEV 325
+L H +D ++ R S K L + +VE++V D+E+
Sbjct: 151 HLA--------------------YHQSGQSDLRFRRISLKESLETIGGHMVEFVVTDMEI 190
Query: 326 VSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNND 385
K V+ F R HLGHLL GD LGYDL ANNN+
Sbjct: 191 DRDN----KKKNFPRQGPVS----FRNCPNWAHTRAHLGHLLKVGDSVLGYDLAEANNNN 242
Query: 386 MELDKYK 392
+K K
Sbjct: 243 GNFEKLK 249
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 15/79 (18%)
Query: 34 CVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNR 93
CV CLR+ VDIT + K I+ YL PP W++ LESKELL
Sbjct: 12 CVTCLRTHVDITANIPKQAIVFCGRNWVRYLNPPSEWVQCSLESKELL------------ 59
Query: 94 VRLVNAEFIWTEPHSKRIK 112
V+A FIWTEPHSKRIK
Sbjct: 60 ---VDAGFIWTEPHSKRIK 75
>gi|358345174|ref|XP_003636657.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355502592|gb|AES83795.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 89
Score = 71.2 bits (173), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 42/63 (66%)
Query: 235 SNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHC 294
++ + Y + +SPI EDLICLPP A LGN+GP+V C KV+NSIALLD L+
Sbjct: 7 THRLTFYYLEQLFLSPIRLEDLICLPPNAAAILGNIGPIVFCSKVSNSIALLDSLALKFG 66
Query: 295 FLD 297
F+D
Sbjct: 67 FMD 69
>gi|357470469|ref|XP_003605519.1| hypothetical protein MTR_4g032550 [Medicago truncatula]
gi|355506574|gb|AES87716.1| hypothetical protein MTR_4g032550 [Medicago truncatula]
Length = 387
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 24 IPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLT 82
I M PNAANMCV CLRSEV ITEGL +++ H PEC+ YL + Q+E K L+
Sbjct: 208 ICMQPNAANMCVKCLRSEVYITEGLLMLLVLVHSPECESYLH-----LSGQVERKYSLS 261
>gi|422294127|gb|EKU21427.1| 60s ribosomal export protein [Nannochloropsis gaditana CCMP526]
Length = 187
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 296 LDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGS-------------------- 335
+ A +YW++ + L+ S L+ Y VLDVE++ G
Sbjct: 1 MTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQREAGYPEGGNGPSR 60
Query: 336 KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGL 394
K+ LA+ ++ + SDFG D +HLGHLL GD LGYDL +A ++G+
Sbjct: 61 KWQLAEVEIIKSSDFGVRDVTHRAVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGM 119
>gi|357494549|ref|XP_003617563.1| hypothetical protein MTR_5g092980 [Medicago truncatula]
gi|355518898|gb|AET00522.1| hypothetical protein MTR_5g092980 [Medicago truncatula]
Length = 119
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 52/107 (48%), Gaps = 24/107 (22%)
Query: 217 VAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVIC 276
+ R+R K L +HD S+ +YTFSVEI PIC DL
Sbjct: 4 IVSSRTRQAKFLFNHDIYSD----RYTFSVEIVPICYGDL-------------------- 39
Query: 277 MKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDV 323
+ + L FTLR+C L+ DQYW + F LT QLVEY VLD+
Sbjct: 40 IFLLLKELLCLIFTLRYCILNVDQYWNALFTPSLTRSQLVEYSVLDI 86
>gi|170054763|ref|XP_001863278.1| nonsense-mediated mRNA decay protein [Culex quinquefasciatus]
gi|167874965|gb|EDS38348.1| nonsense-mediated mRNA decay protein [Culex quinquefasciatus]
Length = 438
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 21/123 (17%)
Query: 171 FFYLEQLILKHDAAARAI-----RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHD 225
FF L + + + RA+ R+ + G++ E V PV+ +
Sbjct: 241 FFLLTHMDITANCELRALPESAERVGPVQSGVE-------------ETSVAVMPVKVTNS 287
Query: 226 KQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIAL 285
K+L+SHD SN++NYKY++++++ PI L+ L K+ +LG + P+ K NSI L
Sbjct: 288 KKLISHDIHSNSYNYKYSYALDVVPISEGSLVFLGNKLHKTLGYISPIT---KKANSIHL 344
Query: 286 LDP 288
+DP
Sbjct: 345 IDP 347
>gi|238611079|ref|XP_002397880.1| hypothetical protein MPER_01619 [Moniliophthora perniciosa FA553]
gi|215473271|gb|EEB98810.1| hypothetical protein MPER_01619 [Moniliophthora perniciosa FA553]
Length = 123
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 34/116 (29%)
Query: 412 RKRSKPRSWKLKSLDMEVDDSKGRT-------------DQEKMNKEYEEFLRDLEENPEL 458
RK++KPR+WKL+S+ E + +G T DQ+K+ ++YE FLRDLEE+PE+
Sbjct: 6 RKKNKPRNWKLRSIGKEAGE-EGETGSGRGVVGRIGGRDQKKVEEDYELFLRDLEEDPEM 64
Query: 459 RFNISLYRN--------------------KDYQPSEMASVTDGEDVPSVPLDELLA 494
R ++LY+ D+Q + D D P V LDE++
Sbjct: 65 RGAVNLYKAAADVKIKSEGARKNQYAMDVDDHQAAGGEDEEDEADFPEVQLDEVVG 120
>gi|726476|gb|AAA76741.1| putative ORF1, partial [Avena fatua]
Length = 59
Score = 54.7 bits (130), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 36/42 (85%), Gaps = 2/42 (4%)
Query: 457 ELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLADLDL 498
ELRF I+LY+N+DY+ SEMAS T G+DVP+VP++EL+ DL L
Sbjct: 1 ELRFGINLYKNEDYR-SEMAS-TIGDDVPTVPIEELIEDLSL 40
>gi|170053269|ref|XP_001862596.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167873851|gb|EDS37234.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 481
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 211 VEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVA 264
VEF V PV+ + K+L+SHD SN++NYKY++ + + P + L+CL K A
Sbjct: 410 VEFTA-VQPVKVTNSKKLISHDIHSNSYNYKYSYELHVVPTSKRSLVCLGKKAA 462
>gi|170062484|ref|XP_001866689.1| NMD protein [Culex quinquefasciatus]
gi|167880370|gb|EDS43753.1| NMD protein [Culex quinquefasciatus]
Length = 348
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 15/133 (11%)
Query: 356 IFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRS 415
+F R L+ P ++ D YS ++ L K K + E +L K +Y +K LR++
Sbjct: 157 VFFCRNCERFLIPPSEW----DQYSLEPKEL-LSKLKQDAISELLLFK-NYYDKSLRRQC 210
Query: 416 KPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEM 475
R+WKLK L E D+ +E N EFL DLEE+PE+R N+ ++++ Q S
Sbjct: 211 --RNWKLKHLTEE--DALDTDIKEDCN----EFLEDLEEDPEMRQNVDIFKDAARQQSVP 262
Query: 476 ASVTDGEDVPSVP 488
V D D PSVP
Sbjct: 263 VDVNDKAD-PSVP 274
>gi|18071400|gb|AAL58259.1|AC068923_1 hypothetical protein [Oryza sativa Japonica Group]
gi|31432861|gb|AAP54437.1| hypothetical protein LOC_Os10g35360 [Oryza sativa Japonica Group]
Length = 140
Score = 48.1 bits (113), Expect = 0.010, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 174 LEQLILKHDAAARAIRI--TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSH 231
+EQ ++ H A A+ + + G+DFF +RSHA + ++ V ++ R KQLVSH
Sbjct: 49 VEQQVVTHGAVGDALHVGAARGHGGLDFFV-SRSHAARLIDLVTSLSSARVVTSKQLVSH 107
Query: 232 DPKSNNFNYKYTFSVEISPICREDLICLP 260
V++ +CR+DLI LP
Sbjct: 108 --------------VKLCLVCRDDLIFLP 122
>gi|294894098|ref|XP_002774735.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
gi|239880262|gb|EER06551.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
Length = 121
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 17/109 (15%)
Query: 398 ETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPE 457
+ I++KK+Y R R + R W L+ L+ E D +E + +YE+F+RD+EE+ +
Sbjct: 8 DVIIVKKTY----TRHRQRKRPWILRRLEREED-----AGEESNDGDYEQFMRDIEEDKD 58
Query: 458 LRFNISLYRNKDYQP--------SEMASVTDGEDVPSVPLDELLADLDL 498
LR I+L+R+ ++ E D + P V L ELL L L
Sbjct: 59 LRQEINLFRDPAWKEPCNVAAAQEEEEGEADDNEAPEVDLAELLDGLTL 107
>gi|307353137|ref|YP_003894188.1| NMD3 family protein [Methanoplanus petrolearius DSM 11571]
gi|307156370|gb|ADN35750.1| NMD3 family protein [Methanoplanus petrolearius DSM 11571]
Length = 347
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 97/261 (37%), Gaps = 41/261 (15%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGL--QKHVIISHCPECDCYLQPPRTWIKAQL 75
+C KCG P +C C V+ TE + Q V + CP C L+ W + L
Sbjct: 7 ICPKCG---RPTEEGLCSNC---RVEETEWMICQPRVQCTQCPTCGS-LKTGSIWTDSHL 59
Query: 76 ESKELLT-FCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
E + L+ + +K V + +P R VK+ V+ L G +EQS +
Sbjct: 60 ERESLIGELAMSGVKLHEDVEDIKVTLSHHDPTPNRTSVKVTVEA-TLYGIQVEQSCNIL 118
Query: 135 YVQQDHMCDSCSRVQAN--------------PDQWVAAVQLRQHVTHRRTFFYLEQLILK 180
V CD CSR+ N PD W A + T +
Sbjct: 119 IVWIGEQCDRCSRLSGNYYAGVIQVRADGRKPDDWEKAKAIEIAYTVEDSC--------- 169
Query: 181 HDAAARAIRITQMDQ---GIDFFFGNRSHAVKFV-EFVGKVAPVRSRHDKQLVSHDPKSN 236
++ R IT+ ++ G+D + + E ++ SRH K + + K
Sbjct: 170 QNSGDRLSFITKTEETRDGVDIVISSHTIGESIAKEIKNRLGGKYSRHPKLIGEKNGKQ- 228
Query: 237 NFNYKYTFSVEISPICREDLI 257
Y+ T+ V + R D++
Sbjct: 229 --VYRITYPVRLPKFRRGDIL 247
>gi|88602121|ref|YP_502299.1| hypothetical protein Mhun_0828 [Methanospirillum hungatei JF-1]
gi|88187583|gb|ABD40580.1| NMD3 [Methanospirillum hungatei JF-1]
Length = 345
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 109/293 (37%), Gaps = 40/293 (13%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+C KCG P +P ++C C S+++ V + CP C+ ++ W
Sbjct: 6 AICPKCGGP-SP-TGDICGKCRASDIEWFT-CDGRVRLVRCPNCNS-MRDNNGW------ 55
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKE-----------VLNGA 125
C + ++L ++A ++ + I +KL+ + +L
Sbjct: 56 -----NDCERSREDLEYEAAISAIHLFQDVQKPEISIKLEENSKNRTFAHISITGLLYNE 110
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLR----------QHVTHRRTFFYLE 175
E + VE + Q CD CSR N W VQLR Q R + E
Sbjct: 111 PREGACTVEILWQFDSCDRCSRYHGN--YWQGVVQLRADGRKATPEEQERAKRIAYQAEE 168
Query: 176 QLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKS 235
+L L+ D + R+ + +G+D G ++ K + + + LV K
Sbjct: 169 ELQLQGDRLSFVTRMEEGREGLDIIVGTQTLGEKISRDITRRMGGKFSLHPTLVGE--KE 226
Query: 236 NNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDP 288
++ T++V + + D+I + LG G + + + + I P
Sbjct: 227 GKKLFRITYAVRLPRYTKGDIIFIRNTYGEILGAEGKTISYLDLASGIPRTVP 279
>gi|350591686|ref|XP_003483312.1| PREDICTED: 60S ribosomal export protein NMD3-like [Sus scrofa]
Length = 73
Score = 44.3 bits (103), Expect = 0.14, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 436 TDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVPLDELLAD 495
TD E+ +Y++FL DLEE+ +R N+++YR+ P E S TD E P + L E+L D
Sbjct: 3 TDNER---QYQDFLEDLEEDEAIRKNVNIYRDPTI-PVE--SDTDDEGAPRISLAEMLED 56
Query: 496 LDLKSD 501
L + D
Sbjct: 57 LHISQD 62
>gi|304314112|ref|YP_003849259.1| NMD3-related protein [Methanothermobacter marburgensis str.
Marburg]
gi|302587571|gb|ADL57946.1| NMD3-related protein [Methanothermobacter marburgensis str.
Marburg]
Length = 351
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 33/260 (12%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSE---VDITEGLQKHVIISHCPECDCYLQPPRTWIKA 73
+ C +CG + +C C + + I G++ +V C C L + W+
Sbjct: 1 MFCVRCGSSDSELYDGLCRDCFLEDYTILSIPSGIEVYV----CSHCHAKLISGQ-WVDE 55
Query: 74 QLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVK---LKVQKEVLNGAILEQS 130
L +E++ ++ +N++ V I E +R + ++V EVL G ++ Q
Sbjct: 56 GLPEEEIVYRALE--ENISWEPPVENPEIELEIIQQRGTIYQCLVEVDAEVL-GRMVSQE 112
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQH-------------VTHRRTFFYLEQL 177
Y VE + +C +CS+ QA+ + A +QLR +T +RT L
Sbjct: 113 YGVEVRLTNTVCPACSK-QAS-GYYEAVIQLRADGRELDKSEIEKADLTVKRTLLKLS-- 168
Query: 178 ILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNN 237
+ D A + ++++GID++ G+ A K V + + +R +L+ D S
Sbjct: 169 --RRDKLAYLPQRIEVNEGIDYYIGSHKSARKVVSALREELGGIARESPRLMGQDRSSGK 226
Query: 238 FNYKYTFSVEISPICREDLI 257
Y+ S+ + R D +
Sbjct: 227 GLYRTWISLRLPDFRRGDFL 246
>gi|325958285|ref|YP_004289751.1| NMD3 family protein [Methanobacterium sp. AL-21]
gi|325329717|gb|ADZ08779.1| NMD3 family protein [Methanobacterium sp. AL-21]
Length = 351
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 98/252 (38%), Gaps = 17/252 (6%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+ C +CG +C +C E I G+ + I+ C C+ L + W ++L
Sbjct: 1 MFCPRCGSDDEELIEGICKSCFIKEAKIV-GMDDDLKITICAHCNSILNGIK-WEDSELS 58
Query: 77 SKELLTFCV-KRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
+EL++F V + L+ + V + + + + ++L ++E+ Y V
Sbjct: 59 DEELVSFAVMENLRAMEHVEDLEISVDILTVRGSNYECLVHAEGKLLGTMVVEE-YKVNV 117
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQ----------HVTHRRTFFYLEQLILKHDAAA 185
++C CS+ + + + +Q+R V L L LK+ A
Sbjct: 118 KIVKNVCPDCSKFASG--YFESVIQIRADNRFPTPEELRVVDEIVRTKLGNLSLKNRMAY 175
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
+ + + +G+D++ G+ A K E + + +LV D Y+ S
Sbjct: 176 VS-DVAMLKEGVDYYVGSYKAAKKVAETIKDSLGGVMQESPRLVGRDKSRGKDLYRIWIS 234
Query: 246 VEISPICREDLI 257
+ + R D +
Sbjct: 235 IRMPDFQRGDFV 246
>gi|339478688|gb|ABE95143.1| Acetyltransferase (cell wall biosynthesis) [Bifidobacterium breve
UCC2003]
Length = 237
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 330 VNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELD 389
V +G + ++ + + + ++ G N I + GHL YA G ++ D+ +D
Sbjct: 92 VRIGNNVFIGQKSLILKGAEIGDNTIIGAGSVVTGHLEGNAVYA-GVPAKKISSLDVYVD 150
Query: 390 KYKGLVLPETILIKKSYEEKRLRKRSKPR----SWKLKSLDME----------VDDSKGR 435
K + L L E L+ + YEE ++ SK W +S D + +DD+ R
Sbjct: 151 KRRNLQLEEATLLVRKYEEVYDKRPSKELLREFFWLFESRDAQLNETFQDVFRLDDNAER 210
Query: 436 TDQ-----EKMNKEYEEFLRDLEENPE 457
+ Q E M ++YE FL +E +P+
Sbjct: 211 SQQAFIRSEPMFEDYEAFLEYVESDPQ 237
>gi|70929557|ref|XP_736820.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56511686|emb|CAH74253.1| hypothetical protein PC000002.00.0 [Plasmodium chabaudi chabaudi]
Length = 254
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 11 PQTVGSVLCCKCGIPMAPNAANMCVACLRS--EVDITEGLQKHVIISHCPECDCYLQPPR 68
P + + C CG + N + MC CL E + T + +I +C EC YL
Sbjct: 161 PTSRRIIQCILCGDNIISNNSKMCNNCLLQSIESNSTNINRDSYLIYYCRECKRYLH--N 218
Query: 69 TWIKAQLESKELL 81
W+ +LESKELL
Sbjct: 219 KWVFCELESKELL 231
>gi|284161810|ref|YP_003400433.1| NMD3 family protein [Archaeoglobus profundus DSM 5631]
gi|284011807|gb|ADB57760.1| NMD3 family protein [Archaeoglobus profundus DSM 5631]
Length = 332
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 105/259 (40%), Gaps = 21/259 (8%)
Query: 19 CCKCGIPMAPNAANMCVACL--RSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
C CG + MC+ C R+++ + + + + CP+C Y + R W E
Sbjct: 3 CAICGNTAVIDG--MCIDCYMKRNKLSWVDDI---IEVVRCPKCG-YFKVGRRWENLDFE 56
Query: 77 SKEL-LTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEY 135
S L L R+ V + E + T K I +++ V ++++S +VE
Sbjct: 57 SALLELIHSSVRIHPQFDVEHLEVEPLTTGEVGKYI---IRLVGNVEGYDVVDES-IVEV 112
Query: 136 VQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK------HDAAARAIR 189
+ C+ C+R+ + + ++ R ++ +I + + A +
Sbjct: 113 RLKSRTCERCTRLSGGYYEAIVQIRADDREIERDELETVKDIINRVLERESDNQKAFVSK 172
Query: 190 ITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEIS 249
I + +GIDF+FG+++ K + K R ++L H Y+YTF+V +
Sbjct: 173 IVERKEGIDFYFGDKNIGRKVSREIVKALGGRLIESRKL--HTRIDGRDVYRYTFAVRLP 230
Query: 250 PICREDLICLPPKVAVSLG 268
D++ ++ + G
Sbjct: 231 CYRIGDIVLDNGRICIVTG 249
>gi|397780159|ref|YP_006544632.1| hypothetical protein BN140_0993 [Methanoculleus bourgensis MS2]
gi|396938661|emb|CCJ35916.1| putative protein MJ1650 [Methanoculleus bourgensis MS2]
Length = 348
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 25/249 (10%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T+ + +C +CG P +C C ++ + + V +CP CD + +TW
Sbjct: 2 TIQTSICPRCG---QPTEGGLCPQCRAADTRLL-SCESRVTAVYCPVCDSQ-KRGKTWSD 56
Query: 73 AQLESKELLT-FCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
++ ++L+ V + + V E S R L V+ L + ++
Sbjct: 57 LRMPREDLIAELAVSAMSIHEDAKNVRLTVRSEETASNRTACTLDVEA-TLYSVPVHETC 115
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK---------HD 182
VE + Q CD CSR+ + VQ+R T R+ Y ++ +
Sbjct: 116 EVEILWQKEACDRCSRISGG--YYEGIVQVR--ATDRKINGYEREVAVSIAEQTEESLQQ 171
Query: 183 AAARAIRITQMD---QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFN 239
A R I++++ G+D G++ + + R +LV K
Sbjct: 172 AGDRLSFISELEDSKDGVDITVGSQHLGQEIARMITGALGGRYTTHPKLVGE--KEGKAL 229
Query: 240 YKYTFSVEI 248
Y+ T+S+ +
Sbjct: 230 YRVTYSIRL 238
>gi|145475505|ref|XP_001423775.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390836|emb|CAK56377.1| unnamed protein product [Paramecium tetraurelia]
Length = 174
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 317 EYIVLDVEV---------VSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLL 367
E+I +D+E + E V +K L D V R + +GK D + I G +
Sbjct: 3 EWIAIDIETPEGKFFKSPIYQEEQVHNAKRNLIDNIVQRCAQYGKLDNPYQIARKTGAMQ 62
Query: 368 NPGDYALGYDLYSANN---NDMELDKYK-GLVLPETIL 401
DY G ++Y ++ +D E+DK +V+PET L
Sbjct: 63 KDFDYEKGQNVYDQDDSFIDDEEIDKENHAMVIPETEL 100
>gi|170053271|ref|XP_001862597.1| NMD protein [Culex quinquefasciatus]
gi|167873852|gb|EDS37235.1| NMD protein [Culex quinquefasciatus]
Length = 94
Score = 40.0 bits (92), Expect = 3.1, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 20/67 (29%)
Query: 360 RTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSK-PR 418
R HLGH+L GD LGYDL AN+N ++E+ +L K R
Sbjct: 45 RAHLGHILKMGDSVLGYDLAEANDNG-------------------NFEKLKLDAMHKQSR 85
Query: 419 SWKLKSL 425
+WKLK L
Sbjct: 86 NWKLKHL 92
>gi|288559846|ref|YP_003423332.1| NMD3 family protein [Methanobrevibacter ruminantium M1]
gi|288542556|gb|ADC46440.1| NMD3 family protein [Methanobrevibacter ruminantium M1]
Length = 346
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 103/253 (40%), Gaps = 19/253 (7%)
Query: 17 VLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLE 76
+ C +CG +C C + + E + +++ ++ C C+ L+ + W +
Sbjct: 1 MFCPECGATDVEMVDGICKNCYLKKFQLME-IPENITVTICKHCNAKLEEGK-WKDEYIP 58
Query: 77 SKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVK---LKVQKEVLNGAILEQSYVV 133
E++ ++ LN L E I E R + ++ VL I+E ++
Sbjct: 59 EDEIIYRTLENNIKLND--LAENEEIELEIDQMRGTIAECYIEAVATVLGEEIVE-THTP 115
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRT--FFYLEQLI-------LKHDAA 184
+ +C CS+ N + A +QLR + E++I K D
Sbjct: 116 NVKIKYSVCPDCSK--RNAGYYEAVIQLRADNRELKEDEIIKAEEIIGRTLDKQFKKDKL 173
Query: 185 ARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTF 244
A ++ ++ +G D++ G+ A K VE + + + + +L+S D + Y+
Sbjct: 174 AYIPQVAKLKEGNDYYIGSLKSAKKVVEHLKEELGGKVKESPRLISEDKSTGKGLYRIWI 233
Query: 245 SVEISPICREDLI 257
S+ + +E++I
Sbjct: 234 SLRLPKFEKENII 246
>gi|126179186|ref|YP_001047151.1| hypothetical protein Memar_1238 [Methanoculleus marisnigri JR1]
gi|125861980|gb|ABN57169.1| Nmd3 [Methanoculleus marisnigri JR1]
Length = 347
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 99/249 (39%), Gaps = 25/249 (10%)
Query: 13 TVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIK 72
T+ + +C +CG P+ +C C ++V + + +V +CP C+ + +TW
Sbjct: 2 TIQTSICPRCG---KPSEEGLCPECRAADVRLLT-CEPYVTTIYCPVCESQ-KRGKTWSD 56
Query: 73 AQLESKELLTFCVKRLKNLNR-VRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSY 131
Q+ ++L+T N++ + V E S R ++V+ L G + ++
Sbjct: 57 LQMPREDLVTELAVSAVNIHEDAKDVRVTVRAEEIASNRTACTVEVEAS-LYGVPVRETC 115
Query: 132 VVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK---------HD 182
E Q CD CSR+ + VQ+R T+R+ Y ++ +
Sbjct: 116 KTEIRWQRESCDRCSRISGG--YYEGIVQVR--ATNRKINAYEREVAVNLAQQAEESLQQ 171
Query: 183 AAARAIRITQMD---QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFN 239
+ R I+ +D G+D G + + + R +LV K
Sbjct: 172 SGDRFSFISDLDDTKDGVDITVGTQHLGQEIARTITGALGGRFTTHPKLVGE--KEGKAL 229
Query: 240 YKYTFSVEI 248
Y+ T+S+ +
Sbjct: 230 YRITYSLRL 238
>gi|84489174|ref|YP_447406.1| NMD3-related protein [Methanosphaera stadtmanae DSM 3091]
gi|84372493|gb|ABC56763.1| predicted NMD3-related protein [Methanosphaera stadtmanae DSM 3091]
Length = 346
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 29/248 (11%)
Query: 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLN 92
+C C E ++ E + ++ + C C L+ + W++ E++ +++ +N
Sbjct: 16 LCKECFLKEFELVE-VPEYATFTVCSHCGATLKHDK-WVQTGYYDDEIINDAIQKDIEIN 73
Query: 93 RVRLVNAEFIWTEPHSKRIKVK---LKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQ 149
+L+N I T+ + R V L V ++ G +E+ Y +E + +C CS+
Sbjct: 74 P-KLLNP-VIETQITNNRGTVYDCILHVSGNII-GEPIEKKYPIEVKVEKGVCSDCSKFY 130
Query: 150 ANPDQWVAAVQLR--------QHVTHRRTFFYLE-QLILKHDAAARAIRITQMDQGIDFF 200
+ + A +QLR + F E Q I K + A + +GID+
Sbjct: 131 SG--YYEAVIQLRADDRKLEESEIEEADLFISNEIQRISKTNKLAYVTERIVLKEGIDYE 188
Query: 201 FGNRSHAVKFV-----EFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRED 255
G+ + A K +F G + R ++V HD + Y+ SV + R D
Sbjct: 189 VGSYNAAHKIAINMQKQFGGHITESR-----KIVGHDKSKSKDLYRSWLSVRLPSFHRND 243
Query: 256 LICLPPKV 263
I K+
Sbjct: 244 FIEYDNKI 251
>gi|388522501|gb|AFK49312.1| unknown [Lotus japonicus]
Length = 208
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 6/164 (3%)
Query: 302 WRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRT 361
W + +K + + + + Y+ D ++ S +L ARVSDFG + +T
Sbjct: 22 WSTRYKIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNLEARVSDFGLATLMEPNKT 81
Query: 362 HLGHLLNPGDYALGYDLYSANNNDMELDKYK-GLVLPETILIKKSYEEKRLRKRSKPRSW 420
H+ ++ L + + + D Y G+VL E + KK +E + + +K +W
Sbjct: 82 HVSTIVAGTFGYLAPEYFDTGRATFKGDVYSFGVVLLELLTGKKPSDETFMEEGTKLVTW 141
Query: 421 -----KLKSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELR 459
+ K ++ +D S G ++ +NK + + LE +P +R
Sbjct: 142 VKAVVREKKEELVLDSSLGSCPEQDVNKVFNIAMMCLEADPLMR 185
>gi|257076884|ref|ZP_05571245.1| NMD protein affecting ribosome stability and mRNA decay
[Ferroplasma acidarmanus fer1]
Length = 330
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 22/188 (11%)
Query: 142 CDSCSRVQANPDQWVAAVQLRQHVTH--------RRTFFYLEQLILKHDAAARAIRITQM 193
C C++V + + + +QLR + T + T + + KHD + RI +
Sbjct: 116 CPVCNKVTGS--YYESVIQLRTYTTAYGKILEEAKDTIVKFMKNLNKHDPNSFISRIDTL 173
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
+G+D + G + AVK + + + K L + F +YT V I + +
Sbjct: 174 KEGLDIYLGKKEDAVKIDKLMELDYFCNMKITKSLAGRKDSKDLF--RYTHLVRILDLQK 231
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++ K + N+ P N+I LLD + + +++R++++ ++
Sbjct: 232 GSVV--YNKAYYMVKNIKP--------NTIELLDIHNGSTLTVSSKEFFRATYRIVMKEP 281
Query: 314 QLVEYIVL 321
+ ++IVL
Sbjct: 282 EATKFIVL 289
>gi|154151211|ref|YP_001404829.1| hypothetical protein Mboo_1669 [Methanoregula boonei 6A8]
gi|153999763|gb|ABS56186.1| NMD3 [Methanoregula boonei 6A8]
Length = 347
Score = 38.5 bits (88), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 24/260 (9%)
Query: 18 LCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLES 77
C KCG P ++ +C AC ++ V HCP C Q TW E
Sbjct: 8 FCPKCGKP--SDSDGLCAACRVADTQWAT-CDTRVTSIHCPGCGATKQV-NTWTDTNRER 63
Query: 78 KELLTFCVKRLKNLN---RVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
++L + + + + RL+ E S R + LK+ L G +E+ VE
Sbjct: 64 EDLAPDLARSAVHFHPDVKKRLIEVRI--RELSSNRSRAYLKISG-TLYGQPVEKECTVE 120
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILK-------HDAAARA 187
CD C+R+ + + VQ+R F + + R
Sbjct: 121 IAWHREQCDRCNRITGS--YYEGIVQVRADGRDMSPFEMQKAAAIATQIEDSLQQGGERL 178
Query: 188 IRITQMDQ---GIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTF 244
I+ M + G+D G++ + V+ G A + R+ K+ ++ T+
Sbjct: 179 SFISDMAETRDGLDVTVGSQHIGLLIVQ--GITAQLGGRYTTHPKLVGEKNGRQLFRITY 236
Query: 245 SVEISPICREDLICLPPKVA 264
V + R D++ LP A
Sbjct: 237 LVRLPRYQRHDVVKLPRTYA 256
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,026,035,346
Number of Sequences: 23463169
Number of extensions: 335440201
Number of successful extensions: 871659
Number of sequences better than 100.0: 578
Number of HSP's better than 100.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 868563
Number of HSP's gapped (non-prelim): 708
length of query: 511
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 364
effective length of database: 8,910,109,524
effective search space: 3243279866736
effective search space used: 3243279866736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)