BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010400
         (511 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZU1|A Chain A, Solution Structure Of The N-Terminal Zinc Fingers Of The
           Xenopus Laevis Double Stranded Rna Binding Protein Zfa
          Length = 127

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 115 LKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYL 174
           L V K+ +N  I E S++      D  C  CS V  +  Q +A  Q R+H    R +  +
Sbjct: 12  LPVGKDAVNSLIRENSHIF----SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI 67

Query: 175 EQ 176
            Q
Sbjct: 68  NQ 69


>pdb|3H8E|A Chain A, Low Ph Native Structure Of Leucine Aminopeptidase From
           Pseud Putida
 pdb|3H8E|B Chain B, Low Ph Native Structure Of Leucine Aminopeptidase From
           Pseud Putida
 pdb|3H8F|A Chain A, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|B Chain B, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|C Chain C, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|D Chain D, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|E Chain E, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|F Chain F, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|F Chain F, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|A Chain A, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|B Chain B, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|C Chain C, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|D Chain D, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|E Chain E, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
          Length = 497

 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 367 LNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLD 426
           LN  D  L  D  + NN D    KY+  +L ET+L  +   ++   ++ +PR+ K  +L 
Sbjct: 103 LNGADAVLALDDVAVNNRDAHYGKYR--LLAETLLDGEYVFDRFKSQKVEPRALKKVTL- 159

Query: 427 MEVDDSKGRTDQEKMNKEYE------EFLRDLEENP 456
             + D  G+ + E+  K          F RDL   P
Sbjct: 160 --LADKAGQAEVERAVKHASAIATGMAFTRDLGNLP 193


>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
           Angstroms
          Length = 1046

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 221 RSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLP--------PKVAVSLGNLGP 272
           +SR      SH   +  F Y++T   E+ P    D +CL         P   +  G +GP
Sbjct: 479 QSRSVPPSASHVAPTETFTYEWTVPKEVGP-TNADPVCLAKMYYSAVDPTKDIFTGLIGP 537

Query: 273 LVICMK 278
           + IC K
Sbjct: 538 MKICKK 543


>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles
           Of Various Metal Cation Binding Sites
          Length = 1065

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 221 RSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLP--------PKVAVSLGNLGP 272
           +SR      SH   +  F Y++T   E+ P    D +CL         P   +  G +GP
Sbjct: 498 QSRSVPPSASHVAPTETFTYEWTVPKEVGP-TNADPVCLAKMYYSAVDPTKDIFTGLIGP 556

Query: 273 LVICMK 278
           + IC K
Sbjct: 557 MKICKK 562


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,857,394
Number of Sequences: 62578
Number of extensions: 604949
Number of successful extensions: 1294
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 10
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)