BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010400
(511 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P2Z6|NMD3_XENTR 60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3
PE=2 SV=1
Length = 504
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/505 (47%), Positives = 345/505 (68%), Gaps = 21/505 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC+CGIP+ PN ANMCV+CLR +VDI+EG+ K V + C +C+ YLQPP TWI+
Sbjct: 13 GNILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+Y+ Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++
Sbjct: 133 DYIVQSQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+SHD +N +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++L+CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + YWRS F SL +
Sbjct: 252 DNLVCLSPKLAQSLGNMNQICICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV+D ++V G+ K++LA+ V + S+ + RTHLGHLLN
Sbjct: 312 QLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQQ-YHCRTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK ++E
Sbjct: 371 PGDLVLGFDLANCNLNDEFINKMNPHHIPDVVLIKKSYDRT---KRQRRRNWKLK--EIE 425
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D TD E ++Y++FL DLEE+ +R N+++Y+N + P E S TD E P +
Sbjct: 426 RDREGMDTDDE---RQYQDFLEDLEEDEVIRKNVNIYKNANL-PVE--SDTDEEGAPRIS 479
Query: 489 LDELLADLDLKSD--DGEGDDSMRE 511
L E+L DL + D GEG + + E
Sbjct: 480 LAEMLEDLHISLDATGGEGAEMLTE 504
>sp|Q55BF2|NMD3_DICDI 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum
GN=nmd3 PE=3 SV=1
Length = 530
Score = 464 bits (1195), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/466 (47%), Positives = 321/466 (68%), Gaps = 11/466 (2%)
Query: 7 MFTVPQT-VGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65
M +PQ ++LCC CG+ + N +NMCV C++S+VDITEG+ K + I C C YLQ
Sbjct: 1 MEYIPQVKQANILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWCRGCARYLQ 60
Query: 66 PPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGA 125
PP W A+LES+ELLT C+KR+K LN+V+LV+A ++WTEPHSKR+KVKL +QKEV A
Sbjct: 61 PPNHWAIAELESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSA 120
Query: 126 ILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAA 185
IL+Q +++E++ Q CD C + +A D W + VQLRQ V H+RTF Y+EQLILKH+A +
Sbjct: 121 ILQQIFIIEFIVQGQQCDKCQKFEAK-DTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHS 179
Query: 186 RAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFS 245
+ + I + G+DFFF NR+HA+KFVEF+ + PV+++ +QL+S D ++N NYKYTFS
Sbjct: 180 QTLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDEQNNAANYKYTFS 239
Query: 246 VEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSS 305
VEI P+ ++D++CLPPK+A LGN+GPLV+ KV+N I +DP TL + A +W S
Sbjct: 240 VEIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLHTGEISALTFWNSP 299
Query: 306 FKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGH 365
F++L + +QLVE+ VLDV + + +Y L+D Q+ R +DFG ND I+ IR+HLG+
Sbjct: 300 FRALSSYKQLVEFTVLDVNLTGA----TRGRYALSDIQLMRSADFGANDNIYDIRSHLGN 355
Query: 366 LLNPGDYALGYDLYSANNNDMELDKY-KGLVLPETILIKKSYEEKR-LRKRSKPRSWKLK 423
+LNPGD ALGYD+ S+N D +L K LP+ +L+KK+Y K R + R W K
Sbjct: 356 ILNPGDLALGYDVASSNFPDSDLAGMKKNQQLPDFVLVKKTYPSKNDFRFK---RHWYFK 412
Query: 424 SLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKD 469
+ E ++ + + ++M ++ EEFLR++E +PELR I++Y+ D
Sbjct: 413 EIPKEGIENPKKFEIDQMERDREEFLREIEADPELRSKINIYKEAD 458
>sp|Q96D46|NMD3_HUMAN 60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1
Length = 503
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>sp|Q5RC82|NMD3_PONAB 60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1
Length = 503
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/502 (46%), Positives = 333/502 (66%), Gaps = 20/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+
Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL VQKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MC C RV+A D W A +Q+RQ H++TF++LEQLILK+ +RI ++
Sbjct: 133 DYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYHLEQLILKYGMHQNTLRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W F SL +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+IV++ +V G+ K+ L + V + S+ + F RTHLGHLLN
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKLK L E
Sbjct: 371 PGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKLKELARE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E P +
Sbjct: 428 RENMD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSAI-PVE--SDTDDEGAPRIS 479
Query: 489 LDELLADLDLKSD-DGEGDDSM 509
L E+L DL + D GE SM
Sbjct: 480 LAEMLEDLHISQDATGEEGASM 501
>sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1
Length = 503
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/508 (45%), Positives = 336/508 (66%), Gaps = 20/508 (3%)
Query: 9 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPR 68
++ + G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP
Sbjct: 7 SIEHSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPA 66
Query: 69 TWIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAIL 127
+W++ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL
Sbjct: 67 SWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAIL 126
Query: 128 EQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARA 187
+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+
Sbjct: 127 QQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNT 185
Query: 188 IRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVE 247
+RI ++ G+DF++ ++ HA K VEF+ + P R + ++L+S D SN +NYK TFSVE
Sbjct: 186 LRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKSTFSVE 245
Query: 248 ISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFK 307
I PIC+++++CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + +W F
Sbjct: 246 IVPICKDNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFN 305
Query: 308 SLLTSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTH 362
SL +QL E+IV++ V S+ V K+ L + + + S+ + F RTH
Sbjct: 306 SLCHPKQLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNTDKQYFC-RTH 364
Query: 363 LGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKL 422
LGHLLNPGD LG+DL + N ND ++K +P+ +LIKKSY+ KR + R+WKL
Sbjct: 365 LGHLLNPGDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKSYDRT---KRQRRRNWKL 421
Query: 423 KSLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGE 482
K L D TD E ++Y++FL DLEE+ +R ++++YR+ P E S TD E
Sbjct: 422 KELAR--DRENMDTDDE---RQYQDFLEDLEEDEAIRKHVNIYRDATI-PVE--SDTDDE 473
Query: 483 DVPSVPLDELLADLDLKSD-DGEGDDSM 509
P + L E+L DL + D GE SM
Sbjct: 474 GAPRISLAEMLEDLHISQDATGEEGASM 501
>sp|Q08DS5|NMD3_BOVIN 60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1
Length = 503
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/508 (45%), Positives = 338/508 (66%), Gaps = 21/508 (4%)
Query: 10 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRT 69
V T G +LCC CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP T
Sbjct: 8 VKHTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGT 67
Query: 70 WIKAQLESKELLTFCVKRLKN-LNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILE 128
W++ LES++LL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+
Sbjct: 68 WVQCALESRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQ 127
Query: 129 QSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAI 188
Q +VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +
Sbjct: 128 QVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTL 186
Query: 189 RITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEI 248
RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI
Sbjct: 187 RIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEI 246
Query: 249 SPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKS 308
PIC+++++CL PK+A SLGN+ + +C++VT+ I L+DP TL+ +D + +W F S
Sbjct: 247 VPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNS 306
Query: 309 LLTSRQLVEYIVLDVEVV-----SSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHL 363
L +QL E+IV++ +V S+ + K+ L + V + S+ + F RTHL
Sbjct: 307 LCHPKQLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC-RTHL 365
Query: 364 GHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLK 423
GHLLNPGD LG+DL + N ND ++K K +P+ +LIKKSY+ R ++R +WKLK
Sbjct: 366 GHLLNPGDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRTRRQRRR---NWKLK 422
Query: 424 SLDMEVDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGED 483
L + +++ TD E ++Y++FL DLEE+ +R N+++YR+ P E S TD E
Sbjct: 423 ELARDRENTD--TDDE---RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVE--SDTDDEG 474
Query: 484 VPSVPLDELLADLDLKSD--DGEGDDSM 509
P + L E+L DL + D GEG+ M
Sbjct: 475 APRISLAEMLEDLHISQDATGGEGESMM 502
>sp|Q6GNS3|NMD3_XENLA 60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2
SV=1
Length = 504
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/500 (47%), Positives = 340/500 (68%), Gaps = 20/500 (4%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC+CGIP+ PN ANMCVACLR++VDI+EG+ K V + C +C+ YLQPP TWI+
Sbjct: 13 GNILCCQCGIPIPPNPANMCVACLRTQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV
Sbjct: 73 LESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
+YV Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++
Sbjct: 133 DYVVQAQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
G+DF++ ++ H K VEF+ P R + ++L+SHD +N +NYK TFSVEI P+C+
Sbjct: 192 HDGLDFYYASKQHGQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++L+CL PK+A SLGN+ + IC +VT++I L+DP TL+ +D + YWR F SL +
Sbjct: 252 DNLVCLSPKLAQSLGNMNQICICARVTSTIHLIDPSTLQIAEVDGNTYWRYPFNSLFHPK 311
Query: 314 QLVEYIVLDVEVVSSEVNVGGS-----KYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
Q+ E+IV+D E++ G+ K+VLA+ V + S+ + RTHLGHLLN
Sbjct: 312 QMEEFIVMDTEIIRDRKQAAGAGMRSNKHVLAEVWVQKTSEMNTTQQ-YHCRTHLGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
PGD LG+DL + N ND ++K +P+ +LIKKSY+ R ++R +WKLK +D
Sbjct: 371 PGDLVLGFDLSNCNLNDEFINKMNPHHIPDVVLIKKSYDRARRQRRR---NWKLKEMDR- 426
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D TD E ++Y++FL DLEE+ LR N+++++N + P E S TD E P +
Sbjct: 427 -DREGMDTDDE---RQYQDFLEDLEEDELLRKNVNIFKNANV-PVE--SDTDEEGAPRIS 479
Query: 489 LDELLADLDLKSDDGEGDDS 508
L E+L DL + S D G++
Sbjct: 480 LAEMLEDLHI-SQDATGEEG 498
>sp|Q09817|NMD3_SCHPO 60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nmd3 PE=3 SV=1
Length = 498
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/492 (43%), Positives = 310/492 (63%), Gaps = 26/492 (5%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
++LCC+CG+P PNAA MC+ C++ DIT G+ + ++HC EC+ Y+QPP W+ A
Sbjct: 20 STILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAP 79
Query: 75 LESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVE 134
LES+EL+ C+K+L+ LN+VRLV+A FIWTEPHS+RIKVKL VQKE IL+QS+ VE
Sbjct: 80 LESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVE 139
Query: 135 YVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMD 194
+ + C C+R P W A Q+RQ V H+RTF YLEQ+ILKH A + I +
Sbjct: 140 FYVNNTQCPDCARTYT-PHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETK 198
Query: 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICRE 254
GIDF+FG R+HA+K VEF+ V P+R + ++L+S D KSN NYK+T+S+EI PIC++
Sbjct: 199 DGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVPICKD 258
Query: 255 DLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSRQ 314
DL+CLP VA + GN+ LV+C KV +I LDP TL+ C + YWR+ F +L +
Sbjct: 259 DLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALADIPE 318
Query: 315 LVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPGDYAL 374
L E+IV DV+++ KY LAD ++ + SD + T RTHLG +LN G+ L
Sbjct: 319 LTEFIVADVDLLGP----TNGKYALADVELIKSSDGSTHLT----RTHLGGILNAGNTVL 370
Query: 375 GYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVDDSKG 434
Y L N N+ D + +PE +++KK+Y + + K R+W+LK++ M+ +
Sbjct: 371 AYHLAVTNFNNEVYDTLREDSIPEVVIVKKTYPQ----TKKKNRNWRLKTIGMQKAEDVK 426
Query: 435 RTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVT---------DGEDVP 485
+ D E+ ++YE FL++LEE+PELR ++LY+ P + +V ED+P
Sbjct: 427 KQDIERQERDYELFLQNLEEDPELRQGVNLYK----APVKAIAVADTDMDEEDEVDEDIP 482
Query: 486 SVPLDELLADLD 497
+ +DELL D++
Sbjct: 483 QISVDELLDDVE 494
>sp|Q5BLF0|NMD3_DANRE 60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1
Length = 505
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/502 (46%), Positives = 338/502 (67%), Gaps = 18/502 (3%)
Query: 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74
G++LCC CG+P+ PN ANMCV+CLR++VDI+EG+ K V I C +C+ YLQPP +W++
Sbjct: 13 GNILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCA 72
Query: 75 LESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 133
LES+ELL C+K+LK ++++VRL++A F+WTEPHSKRIK+KL +QKEV+NGAIL+Q + V
Sbjct: 73 LESRELLALCLKKLKASMSKVRLIDAGFLWTEPHSKRIKIKLTIQKEVMNGAILQQVFTV 132
Query: 134 EYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQM 193
E+V Q MC+ C RV+A D W A VQ+RQ H++TF+YLEQLILKH +RI ++
Sbjct: 133 EFVVQGQMCEDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVRIKEI 191
Query: 194 DQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICR 253
+GIDF++ + HA K V+F+ P RS+ ++L+SHD SN +NYK TFSVEI P+C+
Sbjct: 192 HEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHSNTYNYKSTFSVEIVPVCK 251
Query: 254 EDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLLTSR 313
++++CL P++A SLGN+G + +C++VT+SI L+DP TL+ +D +WR F SL + R
Sbjct: 252 DNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAEVDGSTFWRHPFNSLCSPR 311
Query: 314 QLVEY-----IVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLN 368
QL E+ ++ + + + + +K+ LA+ V + S+ + + RT +GHLLN
Sbjct: 312 QLEEFIIMDIDIIRDQRLGAGAGLKSNKHTLAEVWVQKTSEMDSSHQ-YHCRTFMGHLLN 370
Query: 369 PGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDME 428
GD LG+D +AN ND L+K +P+ +LIKKSY+ KR++ R WKLK +D E
Sbjct: 371 IGDLVLGFDFANANINDEFLNKMNPQHVPDVVLIKKSYDR---MKRARKRVWKLKEMDRE 427
Query: 429 VDDSKGRTDQEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQPSEMASVTDGEDVPSVP 488
D + TD E ++Y EFL DLEE+ LR NI+++R+ P E S TD + P +
Sbjct: 428 KDAAD--TDDE---RQYTEFLEDLEEDEMLRKNINIFRDASKIPVE-ESDTDDDGAPRIS 481
Query: 489 LDELLADLDLK-SDDGEGDDSM 509
L E+L DL L + GEG D M
Sbjct: 482 LAEMLEDLSLSDATGGEGADMM 503
>sp|P38861|NMD3_YEAST 60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NMD3 PE=1 SV=3
Length = 518
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/506 (41%), Positives = 313/506 (61%), Gaps = 23/506 (4%)
Query: 12 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTW 70
Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP W
Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQW 71
Query: 71 IKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQS 130
I+A+LES+ELL C++RLK L +VRLV+A FIWTEPHS+RI++KL VQ E + I++Q+
Sbjct: 72 IRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQT 131
Query: 131 YVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRI 190
+ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I
Sbjct: 132 FEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 190
Query: 191 TQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISP 250
++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI P
Sbjct: 191 SEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVP 250
Query: 251 ICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWRSSFKSLL 310
IC++DL+ LP K+A S+GN+ V+C K++N++ +DP TL+ L YWR+ F +L
Sbjct: 251 ICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALA 310
Query: 311 TSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSDFGKNDTIFSIRTHLGHLLNPG 370
QLVE+IVLDV+ S+ ++ G VLAD VAR SD G ND ++ +R+HLG + + G
Sbjct: 311 DVTQLVEFIVLDVD--STGISRGNR--VLADITVARTSDLGVNDQVYYVRSHLGGICHAG 366
Query: 371 DYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEKRLRKRSKPRSWKLKSLDMEVD 430
D +GY + ++N N D +P+ +L+KK Y+ RK K R WKLK + E
Sbjct: 367 DSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQ----RKSKKSRHWKLKRMAKEHK 422
Query: 431 DSKGRTD---------QEKMNKEYEEFLRDLEENPELRFNISLYRNKDYQ---PSEMASV 478
D D E+ K+YE FL++LEE+ ELR +++LY+N++
Sbjct: 423 DIDASLDYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDE 482
Query: 479 TDGEDVPSVPLDELLADLD-LKSDDG 503
+ ED P + +DELL +LD + +DG
Sbjct: 483 DEDEDAPQINIDELLDELDEMTLEDG 508
>sp|D4ABH7|BN3D2_RAT Pre-miRNA 5'-monophosphate methyltransferase OS=Rattus norvegicus
GN=Bcdin3d PE=3 SV=1
Length = 285
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 140 HMCDSCSRVQANPDQW----VAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
H+ CS + P W AA +LR+ H F + L ++ D A++ +RI D
Sbjct: 186 HVSSLCSYLLVEPQPWKCYRAAARRLRKLGLH--NFDHFRSLAIRGDMASQIVRILTQDH 243
Query: 196 GIDFF--FGNRSHAVKFVEFVGK 216
G++ FGN S + F K
Sbjct: 244 GMELACCFGNTSWDRSLLLFRAK 266
>sp|B0JZ85|ZN346_XENTR Zinc finger protein 346 OS=Xenopus tropicalis GN=znf346 PE=2 SV=2
Length = 354
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 113 VKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFF 172
V+L V KE ++ I E S++ D C CS V + Q +A Q R+H R +
Sbjct: 11 VELPVGKEAVDALIRENSHIFS----DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM 66
Query: 173 YLEQ 176
+ Q
Sbjct: 67 SIHQ 70
>sp|Q91YP1|BN3D2_MOUSE Pre-miRNA 5'-monophosphate methyltransferase OS=Mus musculus
GN=Bcdin3d PE=2 SV=1
Length = 285
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 140 HMCDSCSRVQANPDQW----VAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQ 195
H+ CS + P W AA +LR+ H +F + L ++ D A + +RI D
Sbjct: 186 HVSSLCSYLLVEPQPWKCYRAAARRLRKLGLH--SFDHFRSLAIRGDMAKQIVRILTQDH 243
Query: 196 GIDFF--FGNRSHAVKFVEFVGK 216
G++ FGN S + F K
Sbjct: 244 GMELACCFGNTSWDRSLLLFRAK 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,423,163
Number of Sequences: 539616
Number of extensions: 8160223
Number of successful extensions: 22442
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 22339
Number of HSP's gapped (non-prelim): 85
length of query: 511
length of database: 191,569,459
effective HSP length: 122
effective length of query: 389
effective length of database: 125,736,307
effective search space: 48911423423
effective search space used: 48911423423
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)