Query 010400
Match_columns 511
No_of_seqs 192 out of 369
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 05:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 89.7 0.042 1.5E-06 53.9 -1.2 49 23-72 190-240 (256)
2 2eif_A IF-5A, protein (eukaryo 84.0 1.8 6.1E-05 38.7 6.2 22 243-264 8-29 (136)
3 2jrp_A Putative cytoplasmic pr 79.9 0.62 2.1E-05 38.4 1.4 23 17-39 3-26 (81)
4 3ga8_A HTH-type transcriptiona 69.8 1.5 5.2E-05 35.1 1.3 46 16-66 2-48 (78)
5 1bkb_A Translation initiation 66.4 6.9 0.00024 34.8 5.0 26 238-264 2-27 (136)
6 3j20_Y 30S ribosomal protein S 66.2 2.9 9.9E-05 31.2 2.1 13 14-26 17-29 (50)
7 2zet_C Melanophilin; complex, 65.0 1.9 6.4E-05 39.4 1.0 55 13-82 65-122 (153)
8 2jne_A Hypothetical protein YF 64.7 2.6 8.9E-05 35.9 1.7 41 15-65 31-72 (101)
9 1vq8_Z 50S ribosomal protein L 62.4 1.6 5.6E-05 36.0 0.1 39 15-74 26-64 (83)
10 3j20_P 30S ribosomal protein S 59.9 6.8 0.00023 30.0 3.1 42 1-42 1-47 (56)
11 2kzy_A ZNF216-A20, zfand5 prot 57.9 6.5 0.00022 30.8 2.8 27 15-41 12-39 (62)
12 2csz_A Synaptotagmin-like prot 57.2 6.9 0.00023 31.8 2.9 44 12-71 21-66 (76)
13 2pk7_A Uncharacterized protein 57.2 2.7 9.1E-05 33.5 0.5 33 16-49 8-43 (69)
14 3o9x_A Uncharacterized HTH-typ 55.9 2.9 0.0001 35.9 0.6 17 51-67 33-49 (133)
15 2hf1_A Tetraacyldisaccharide-1 55.4 2.4 8.2E-05 33.7 -0.1 33 16-49 8-43 (68)
16 2jr6_A UPF0434 protein NMA0874 55.3 2.4 8.2E-05 33.6 -0.1 34 15-49 7-43 (68)
17 2jrp_A Putative cytoplasmic pr 55.0 4.4 0.00015 33.3 1.4 46 16-66 18-63 (81)
18 2zkr_2 60S ribosomal protein L 53.4 7.7 0.00026 32.9 2.7 27 1-27 1-27 (97)
19 3qt1_I DNA-directed RNA polyme 52.8 5 0.00017 35.8 1.5 29 139-171 92-120 (133)
20 2js4_A UPF0434 protein BB2007; 51.8 2.7 9.3E-05 33.5 -0.3 34 15-49 7-43 (70)
21 2k4x_A 30S ribosomal protein S 51.6 4.4 0.00015 30.8 0.9 11 16-26 18-28 (55)
22 2jny_A Uncharacterized BCR; st 49.5 3.4 0.00012 32.7 -0.1 34 15-49 9-45 (67)
23 3iz5_m 60S ribosomal protein L 49.0 7.5 0.00026 32.7 1.9 36 52-89 52-87 (92)
24 3izc_m 60S ribosomal protein R 47.9 7.7 0.00026 32.6 1.8 36 52-89 52-87 (92)
25 4a17_Y RPL37A, 60S ribosomal p 45.9 6.3 0.00021 33.8 1.0 38 52-91 52-89 (103)
26 1vq8_1 50S ribosomal protein L 42.5 5 0.00017 30.9 -0.1 31 8-38 9-39 (57)
27 3cc2_Z 50S ribosomal protein L 42.4 6 0.0002 34.6 0.3 21 53-74 77-97 (116)
28 1khi_A HEX1; membrane sealing, 42.0 32 0.0011 32.1 5.2 76 242-324 31-112 (176)
29 1vk6_A NADH pyrophosphatase; 1 41.8 15 0.0005 36.0 3.1 30 15-44 106-138 (269)
30 1qxf_A GR2, 30S ribosomal prot 41.6 5.2 0.00018 31.7 -0.1 31 33-67 9-39 (66)
31 3u5c_d S36, YS29, 40S ribosoma 39.5 13 0.00045 28.5 1.8 30 13-42 15-47 (56)
32 1zbd_B Rabphilin-3A; G protein 39.3 12 0.00041 33.3 1.8 53 15-82 54-112 (134)
33 2kq9_A DNAK suppressor protein 39.2 6.3 0.00021 33.9 -0.0 24 15-38 80-109 (112)
34 1ffk_W Ribosomal protein L37AE 39.0 18 0.00063 29.1 2.7 23 51-74 42-64 (73)
35 2kgo_A Uncharacterized protein 38.6 8 0.00027 33.4 0.5 25 16-40 56-86 (108)
36 1twf_I B12.6, DNA-directed RNA 38.5 14 0.00046 32.2 2.0 36 15-66 3-38 (122)
37 2k2d_A Ring finger and CHY zin 36.8 4.7 0.00016 32.9 -1.2 15 13-27 34-48 (79)
38 2fiy_A Protein FDHE homolog; F 36.6 17 0.00058 36.6 2.7 34 32-65 223-264 (309)
39 3iz6_N 40S ribosomal protein S 35.7 20 0.00067 27.5 2.3 30 13-42 15-47 (56)
40 2xzm_N RPS29E; ribosome, trans 34.7 26 0.0009 26.6 2.8 30 13-42 14-46 (55)
41 1gh9_A 8.3 kDa protein (gene M 32.8 28 0.00097 27.7 2.8 23 50-73 17-39 (71)
42 3j20_W 30S ribosomal protein S 32.5 7.8 0.00027 30.4 -0.5 19 50-68 30-48 (63)
43 1qyp_A RNA polymerase II; tran 32.3 30 0.001 25.8 2.8 38 16-63 15-52 (57)
44 2r5r_A UPF0343 protein NE1163; 32.1 2.4E+02 0.0081 27.8 10.0 51 113-165 129-181 (271)
45 2con_A RUH-035 protein, NIN on 31.9 11 0.00036 30.9 0.2 23 32-62 16-38 (79)
46 3iv4_A Putative oxidoreductase 31.4 49 0.0017 28.4 4.4 46 195-243 53-98 (112)
47 2c7n_A Rabex-5, GEF 1, RAB gua 31.0 15 0.00051 29.6 0.9 28 15-42 15-43 (74)
48 3j21_e 50S ribosomal protein L 30.7 12 0.0004 29.3 0.2 24 15-38 16-39 (62)
49 3oj3_I Tumor necrosis factor a 30.4 17 0.00059 27.0 1.1 29 13-41 15-45 (49)
50 3d2o_A UPF0343 protein NGO0387 30.3 3.4E+02 0.012 26.4 10.8 51 112-165 119-171 (257)
51 2vqe_N 30S ribosomal protein S 30.0 24 0.0008 27.4 1.9 36 13-49 18-54 (61)
52 1x0t_A Ribonuclease P protein 28.7 6.9 0.00023 34.1 -1.5 20 48-67 59-78 (120)
53 1twf_L ABC10-alpha, DNA-direct 28.4 21 0.00072 28.4 1.4 11 17-27 29-39 (70)
54 3vth_A Hydrogenase maturation 27.1 13 0.00044 42.0 -0.1 51 13-64 130-193 (761)
55 1pft_A TFIIB, PFTFIIBN; N-term 26.5 11 0.00038 27.3 -0.5 12 54-65 24-35 (50)
56 3ou5_A Serine hydroxymethyltra 26.5 15 0.00052 39.4 0.3 30 350-379 113-153 (490)
57 2k3r_A Ribonuclease P protein 26.0 8.4 0.00029 33.8 -1.5 20 48-67 54-73 (123)
58 2p09_A A non-biological ATP bi 25.5 14 0.00049 29.0 -0.1 30 17-46 23-60 (81)
59 4hc9_A Trans-acting T-cell-spe 25.5 21 0.00071 31.0 0.9 58 16-75 5-78 (115)
60 3j21_i 50S ribosomal protein L 25.4 20 0.00069 29.5 0.8 22 52-74 51-72 (83)
61 3cng_A Nudix hydrolase; struct 25.1 2.9E+02 0.01 24.3 8.8 26 16-41 3-35 (189)
62 2e72_A POGO transposable eleme 24.7 7.3 0.00025 29.0 -1.8 27 12-38 8-37 (49)
63 1l8d_A DNA double-strand break 23.6 17 0.00056 30.6 -0.1 10 18-27 49-58 (112)
64 3vk6_A E3 ubiquitin-protein li 23.5 5.5 0.00019 34.1 -3.0 35 30-66 36-73 (101)
65 3pih_A Uvrabc system protein A 23.2 27 0.00091 40.3 1.5 23 16-38 249-280 (916)
66 1k81_A EIF-2-beta, probable tr 22.9 25 0.00087 24.2 0.8 15 50-64 17-31 (36)
67 2jv2_A Putative uncharacterize 22.7 34 0.0012 27.9 1.7 36 250-291 41-76 (83)
68 3jyw_9 60S ribosomal protein L 22.7 21 0.0007 28.7 0.3 21 53-74 43-63 (72)
69 1iz6_A Initiation factor 5A; S 22.6 67 0.0023 28.4 3.7 50 242-297 3-59 (138)
70 2zjr_Z 50S ribosomal protein L 22.6 27 0.00091 26.9 1.0 23 14-38 28-50 (60)
71 2xzm_6 RPS27E; ribosome, trans 22.3 13 0.00043 30.6 -1.0 31 33-67 34-64 (81)
72 2k1g_A Lipoprotein SPR; soluti 22.2 51 0.0018 29.1 2.9 57 243-307 60-118 (135)
73 3iz6_X 40S ribosomal protein S 21.8 14 0.00049 30.6 -0.8 31 33-67 38-68 (86)
74 1x3z_A Peptide: N-glycanase; h 21.7 42 0.0014 34.3 2.5 47 15-65 118-166 (335)
75 4e2x_A TCAB9; kijanose, tetron 21.6 34 0.0012 34.5 1.9 50 16-67 12-66 (416)
76 4a18_A RPL37, ribosomal protei 20.9 16 0.00055 30.7 -0.6 26 12-37 12-37 (94)
77 1lv3_A Hypothetical protein YA 20.6 28 0.00097 27.6 0.7 14 14-27 7-20 (68)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.67 E-value=0.042 Score=53.88 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=31.7
Q ss_pred CcccCCCCcccchhhhcccc--ccccccCceEEEEeCCCCCceecCCCceee
Q 010400 23 GIPMAPNAANMCVACLRSEV--DITEGLQKHVIISHCPECDCYLQPPRTWIK 72 (511)
Q Consensus 23 G~~i~~~~~~mC~~C~~~~~--dI~egIp~~~~v~~C~~Cgry~~~p~~Wv~ 72 (511)
|..+.+..+|-|..|+..-- .+.+ |-..-.|.+||+|||+++.+..|-.
T Consensus 190 g~avv~v~~~~C~GC~~~lppq~~~~-i~~~~~Iv~Cp~CgRIL~~~~~~~~ 240 (256)
T 3na7_A 190 NTSIVTIKKQACGGCFIRLNDKIYTE-VLTSGDMITCPYCGRILYAEGAYES 240 (256)
T ss_dssp GGSEEECBTTBCTTTCCBCCHHHHHH-HHHSSSCEECTTTCCEEECSCC---
T ss_pred CceEEEeeCCccCCCCeeeCHHHHHH-HHCCCCEEECCCCCeeEEeCcchhh
Confidence 44556667889999988543 2222 3223368999999999997656644
No 2
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=83.98 E-value=1.8 Score=38.68 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=19.5
Q ss_pred EEEEEEcccCCCCEEEcCchhh
Q 010400 243 TFSVEISPICREDLICLPPKVA 264 (511)
Q Consensus 243 T~SVrIppickgDlV~l~~k~a 264 (511)
||+++.+.|++|+.|.+.++++
T Consensus 8 t~~i~~~~lr~G~~I~~~g~p~ 29 (136)
T 2eif_A 8 TKQVNVGSLKVGQYVMIDGVPC 29 (136)
T ss_dssp EEEEEGGGCCTTSEEEETTEEE
T ss_pred eEEEEHHHCcCCCEEEECCEEE
Confidence 8999999999999999987653
No 3
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=79.87 E-value=0.62 Score=38.41 Aligned_cols=23 Identities=22% Similarity=0.652 Sum_probs=11.1
Q ss_pred ecccccCcccCCCCcc-cchhhhc
Q 010400 17 VLCCKCGIPMAPNAAN-MCVACLR 39 (511)
Q Consensus 17 i~C~~CG~~i~~~~~~-mC~~C~~ 39 (511)
..||.|+.+++..... -|..|-.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~ 26 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAK 26 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCC
T ss_pred CCCCCCCCccccCCCceECccccc
Confidence 4566666655543222 2555543
No 4
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=69.82 E-value=1.5 Score=35.12 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=24.9
Q ss_pred eecccccCcc-cCCCCcccchhhhccccccccccCceEEEEeCCCCCceecC
Q 010400 16 SVLCCKCGIP-MAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66 (511)
Q Consensus 16 ~i~C~~CG~~-i~~~~~~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~~ 66 (511)
.|.||.||.. ..+ +.-..=+.-.-..+. | +.+.-.+|+.||..+..
T Consensus 2 ~m~Cp~Cg~~~l~~---~~~~~~~~~~G~~~~-I-~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 2 HMKCPVCHQGEMVS---GIKDIPYTFRGRKTV-L-KGIHGLYCVHCEESIMN 48 (78)
T ss_dssp -CBCTTTSSSBEEE---EEEEEEEEETTEEEE-E-EEEEEEEETTTCCEECC
T ss_pred ceECCCCCCCeeEe---EEEEEEEEECCEEEE-E-cCceeEECCCCCCEEEC
Confidence 4789999964 321 111000001111222 3 46788999999988765
No 5
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=66.38 E-value=6.9 Score=34.76 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=21.8
Q ss_pred eeEEEEEEEEEcccCCCCEEEcCchhh
Q 010400 238 FNYKYTFSVEISPICREDLICLPPKVA 264 (511)
Q Consensus 238 ~~yr~T~SVrIppickgDlV~l~~k~a 264 (511)
+.++ ||.+....|++|..|.+.++++
T Consensus 2 ~~~~-t~~i~~~~lrkG~~i~~~g~p~ 27 (136)
T 1bkb_A 2 WVMS-TKYVEAGELKEGSYVVIDGEPC 27 (136)
T ss_dssp CCCC-CEEEEGGGCCTTCEEEETTEEE
T ss_pred cceE-EEEEEHHHccCCCEEEECCEEE
Confidence 4566 8999999999999999998654
No 6
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.17 E-value=2.9 Score=31.18 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=9.7
Q ss_pred cceecccccCccc
Q 010400 14 VGSVLCCKCGIPM 26 (511)
Q Consensus 14 ~~~i~C~~CG~~i 26 (511)
....+||.||...
T Consensus 17 ~~~k~CP~CG~~~ 29 (50)
T 3j20_Y 17 RKNKFCPRCGPGV 29 (50)
T ss_dssp CSSEECSSSCSSC
T ss_pred EecccCCCCCCce
Confidence 3457899999863
No 7
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=65.01 E-value=1.9 Score=39.44 Aligned_cols=55 Identities=16% Similarity=0.460 Sum_probs=39.1
Q ss_pred ccceecccccCcccCC--CCcccchhhhccccccccccCceEEEEeCCCCCceecCCCceeeCC-cChHHHHH
Q 010400 13 TVGSVLCCKCGIPMAP--NAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ-LESKELLT 82 (511)
Q Consensus 13 ~~~~i~C~~CG~~i~~--~~~~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~~p~~Wv~~~-les~ELL~ 82 (511)
......|.+|+.+... |.+..|.+|- ..+|+.|+.|..+.+.|+=.- .+.+||+.
T Consensus 65 ~~~~~~C~~C~~~fg~l~~~g~~C~~C~---------------~~VC~~C~~~~~~~~~W~C~vC~k~rel~~ 122 (153)
T 2zet_C 65 HLNETHCARCLQPYRLLLNSRRQCLECS---------------LFVCKSCSHAHPEEQGWLCDPCHLARVVKI 122 (153)
T ss_dssp TGGGTBCTTTCCBGGGCSSCCEECTTTC---------------CEECGGGEECCSSSSSCEEHHHHHHHHHHH
T ss_pred cCCCccchhhcCccccccCCCCcCCCCC---------------chhhcccccccCCCCcEeeHHHHHHHHHHH
Confidence 3456789999998543 5678999994 368999998887666786442 24566654
No 8
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.70 E-value=2.6 Score=35.89 Aligned_cols=41 Identities=22% Similarity=0.512 Sum_probs=28.8
Q ss_pred ceecccccCcccCCCCcc-cchhhhccccccccccCceEEEEeCCCCCceec
Q 010400 15 GSVLCCKCGIPMAPNAAN-MCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65 (511)
Q Consensus 15 ~~i~C~~CG~~i~~~~~~-mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~ 65 (511)
....||.|+.+++..... .|..|-.. -...-+||.|+.-|+
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~----------f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEF----------IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCE----------EEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecCCEEECccccch----------hhccccCcchhhHHH
Confidence 457999999998765444 49998662 234567888877664
No 9
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=62.39 E-value=1.6 Score=35.97 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=27.9
Q ss_pred ceecccccCcccCCCCcccchhhhccccccccccCceEEEEeCCCCCceecCCCceeeCC
Q 010400 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQ 74 (511)
Q Consensus 15 ~~i~C~~CG~~i~~~~~~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~~p~~Wv~~~ 74 (511)
..-.||.||.+..- + ....+-.|+.||.-+-+ |-|....
T Consensus 26 ~~y~Cp~CG~~~v~--------------r------~atGiW~C~~Cg~~~ag-gay~~~t 64 (83)
T 1vq8_Z 26 EDHACPNCGEDRVD--------------R------QGTGIWQCSYCDYKFTG-GSYKPET 64 (83)
T ss_dssp SCEECSSSCCEEEE--------------E------EETTEEEETTTCCEEEC-CSSSSSC
T ss_pred ccCcCCCCCCccee--------------c------cCCCeEECCCCCCEecC-CEecccc
Confidence 34579999986431 1 12237899999999998 6898865
No 10
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.86 E-value=6.8 Score=30.04 Aligned_cols=42 Identities=24% Similarity=0.416 Sum_probs=26.1
Q ss_pred CCCCCCCCcccC--ccceecccccCcccCC---CCcccchhhhcccc
Q 010400 1 MAQDAGMFTVPQ--TVGSVLCCKCGIPMAP---NAANMCVACLRSEV 42 (511)
Q Consensus 1 ~~~~~~~~~~~~--~~~~i~C~~CG~~i~~---~~~~mC~~C~~~~~ 42 (511)
||-..-..+-+. ..+...|..||++--- .--+||-.|+++..
T Consensus 1 ma~~~~~~~~~r~~grg~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A 47 (56)
T 3j20_P 1 MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIQGLMLCRHCFREVA 47 (56)
T ss_dssp CCCCCCSCCSCCSSSSTTCCCSSSCCSSSCCCTTTCCCCHHHHHHHH
T ss_pred CccccccCCCCcccCCCceEeecCCCCcccccccCChHHHHHHHHHH
Confidence 555554444444 3444789999998421 12245999998753
No 11
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=57.93 E-value=6.5 Score=30.76 Aligned_cols=27 Identities=33% Similarity=0.923 Sum_probs=20.3
Q ss_pred ceecccc-cCcccCCCCcccchhhhccc
Q 010400 15 GSVLCCK-CGIPMAPNAANMCVACLRSE 41 (511)
Q Consensus 15 ~~i~C~~-CG~~i~~~~~~mC~~C~~~~ 41 (511)
..++|.. ||-.=.|...|||..||+..
T Consensus 12 ~~~lC~ngCGFfGnpaT~nlCSkCyr~~ 39 (62)
T 2kzy_A 12 GPMLCSTGCGFYGNPRTNGMCSVCYKEH 39 (62)
T ss_dssp CCCBCTTCCSSBCCTTTTSCCHHHHHHH
T ss_pred cccchhhCCCCcCChhhcCcCHHHHHHH
Confidence 4567863 87765556689999999975
No 12
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.22 E-value=6.9 Score=31.82 Aligned_cols=44 Identities=23% Similarity=0.534 Sum_probs=34.8
Q ss_pred CccceecccccCcccCC--CCcccchhhhccccccccccCceEEEEeCCCCCceecCCCcee
Q 010400 12 QTVGSVLCCKCGIPMAP--NAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWI 71 (511)
Q Consensus 12 ~~~~~i~C~~CG~~i~~--~~~~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~~p~~Wv 71 (511)
+......|.+|+.+.-. +.++.|.+|- ..+|+.|+-+..+ +.|.
T Consensus 21 ~~~~~r~CarC~~~LG~l~~~g~~C~~Ck---------------~rVC~~Crv~~~~-~~W~ 66 (76)
T 2csz_A 21 QHYSDRTCARCQESLGRLSPKTNTCRGCN---------------HLVCRDCRIQESN-GTWR 66 (76)
T ss_dssp TTCCCCBCSSSCCBCSSSCTTTSEETTTT---------------EECCTTSEEECST-TCEE
T ss_pred cCCCccchhhhCccccccccCCCcCcccC---------------hhhcccccccCCC-CCEE
Confidence 45677889999999754 3568999984 4689999999877 5896
No 13
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=57.21 E-value=2.7 Score=33.50 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=19.6
Q ss_pred eecccccCcccCCCCc---ccchhhhccccccccccC
Q 010400 16 SVLCCKCGIPMAPNAA---NMCVACLRSEVDITEGLQ 49 (511)
Q Consensus 16 ~i~C~~CG~~i~~~~~---~mC~~C~~~~~dI~egIp 49 (511)
..-||.|+.+..-... =.|..| ...++|.+|||
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~c-g~~YPI~dGIP 43 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGA-GLAYPIRDGIP 43 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTT-TEEEEEETTEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCC-CcEecCcCCee
Confidence 3569999987653221 246666 34566666665
No 14
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=55.94 E-value=2.9 Score=35.89 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=13.7
Q ss_pred eEEEEeCCCCCceecCC
Q 010400 51 HVIISHCPECDCYLQPP 67 (511)
Q Consensus 51 ~~~v~~C~~Cgry~~~p 67 (511)
.+...+|..||..+..+
T Consensus 33 ~v~~~~C~~CGE~~~d~ 49 (133)
T 3o9x_A 33 GIHGLYCVHCEESIMNK 49 (133)
T ss_dssp EEEEEEESSSSCEECCH
T ss_pred CCceeECCCCCCEeecH
Confidence 35788999999988764
No 15
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=55.37 E-value=2.4 Score=33.66 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=20.3
Q ss_pred eecccccCcccCCCCc---ccchhhhccccccccccC
Q 010400 16 SVLCCKCGIPMAPNAA---NMCVACLRSEVDITEGLQ 49 (511)
Q Consensus 16 ~i~C~~CG~~i~~~~~---~mC~~C~~~~~dI~egIp 49 (511)
-.-||.|+.+..-... =.|..| ...++|.+|||
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~c-g~~YPI~dGIP 43 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGD-RLAFPIKDGIP 43 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTT-TEEEEEETTEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCC-CcEecCCCCee
Confidence 3569999987653221 256666 35566666665
No 16
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=55.34 E-value=2.4 Score=33.65 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=20.7
Q ss_pred ceecccccCcccCCCCc---ccchhhhccccccccccC
Q 010400 15 GSVLCCKCGIPMAPNAA---NMCVACLRSEVDITEGLQ 49 (511)
Q Consensus 15 ~~i~C~~CG~~i~~~~~---~mC~~C~~~~~dI~egIp 49 (511)
.-.-||.|+.+..-... =.|..| ...++|.+|||
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~c-g~~YPI~dGIP 43 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQA-KLAYPIKDGIP 43 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTT-TEEEEEETTEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCC-CcEecCCCCee
Confidence 34569999987653221 256666 35566666665
No 17
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=54.98 E-value=4.4 Score=33.33 Aligned_cols=46 Identities=13% Similarity=0.332 Sum_probs=27.6
Q ss_pred eecccccCcccCCCCcccchhhhccccccccccCceEEEEeCCCCCceecC
Q 010400 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66 (511)
Q Consensus 16 ~i~C~~CG~~i~~~~~~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~~ 66 (511)
...|..||+.+.++. .|++|=..--.+.. . .+.-+||..|+-...+
T Consensus 18 ~~~C~~C~~~~~~~a--fCPeCgq~Le~lkA-C--GA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA--LCPDCRQPLQVLKA-C--GAVDYFCQNGHGLISK 63 (81)
T ss_dssp EEECTTTCCEEEEEE--ECSSSCSCCCEEEE-T--TEEEECCTTTTCCCCT
T ss_pred ceECccccccCCCcc--cCcchhhHHHHHHh-c--CCcCeeeccCCCEeec
Confidence 345777777766533 77777554333322 1 2347888888876654
No 18
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=53.41 E-value=7.7 Score=32.88 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=17.2
Q ss_pred CCCCCCCCcccCccceecccccCcccC
Q 010400 1 MAQDAGMFTVPQTVGSVLCCKCGIPMA 27 (511)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~C~~CG~~i~ 27 (511)
|..+...+.-......++|++||...-
T Consensus 1 M~KGT~SfGkr~~KtH~lCrRCG~~sf 27 (97)
T 2zkr_2 1 MTKGTSSFGKRRNKTHTLCRRCGSKAY 27 (97)
T ss_dssp --CCSSSCSCSCCCCEECCTTTCSSCE
T ss_pred CCCCCCCcccccCCCCCcCCCCCCccC
Confidence 444455555555666789999999743
No 19
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=52.81 E-value=5 Score=35.78 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=0.0
Q ss_pred ccCCchhhhhccCCcceEEEEEEeeccCchhhH
Q 010400 139 DHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTF 171 (511)
Q Consensus 139 ~~~C~~C~R~~~~~~~w~AiVQVRq~~~~krt~ 171 (511)
...||.|....+- || .+|+|.......+|
T Consensus 92 ~~~CpkCg~~~a~--f~--q~Q~RsaDE~mT~f 120 (133)
T 3qt1_I 92 DRECPKCHSRENV--FF--QLQIRSADEPMTTF 120 (133)
T ss_dssp ---------------------------------
T ss_pred cCCCCCCCCceEE--EE--EEeeecCCCCCcEE
Confidence 4689999876653 45 67888665544333
No 20
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=51.76 E-value=2.7 Score=33.53 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=20.2
Q ss_pred ceecccccCcccCCCCc---ccchhhhccccccccccC
Q 010400 15 GSVLCCKCGIPMAPNAA---NMCVACLRSEVDITEGLQ 49 (511)
Q Consensus 15 ~~i~C~~CG~~i~~~~~---~mC~~C~~~~~dI~egIp 49 (511)
.-.-||.|+.+..-... =.|..| ...++|.+|||
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~c-g~~YPI~dGIP 43 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNAD-RLAFPVRDGVP 43 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTT-TEEEEEETTEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCC-CceecCCCCee
Confidence 34569999997543221 246666 34566666665
No 21
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=51.60 E-value=4.4 Score=30.77 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=8.8
Q ss_pred eecccccCccc
Q 010400 16 SVLCCKCGIPM 26 (511)
Q Consensus 16 ~i~C~~CG~~i 26 (511)
..+||.||...
T Consensus 18 ~~fCPkCG~~~ 28 (55)
T 2k4x_A 18 HRFCPRCGPGV 28 (55)
T ss_dssp SCCCTTTTTTC
T ss_pred cccCcCCCCce
Confidence 57899999853
No 22
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=49.50 E-value=3.4 Score=32.74 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=22.6
Q ss_pred ceecccccCcccCCCCc---ccchhhhccccccccccC
Q 010400 15 GSVLCCKCGIPMAPNAA---NMCVACLRSEVDITEGLQ 49 (511)
Q Consensus 15 ~~i~C~~CG~~i~~~~~---~mC~~C~~~~~dI~egIp 49 (511)
.-.-||.|+.+..-... -.|..| ...++|.+|||
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c-~~~YPI~dGIP 45 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERL-NLAYRIDDGIP 45 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTT-TEEEEEETTEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCC-CccccCCCCEe
Confidence 34569999998653222 267777 46677777776
No 23
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=48.95 E-value=7.5 Score=32.69 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=24.6
Q ss_pred EEEEeCCCCCceecCCCceeeCCcChHHHHHHHHHHhc
Q 010400 52 VIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK 89 (511)
Q Consensus 52 ~~v~~C~~Cgry~~~p~~Wv~~~les~ELL~~~Lkki~ 89 (511)
+-|-.|+.||..+-+ |-|....+ +-..+...+++++
T Consensus 52 ~GIW~C~~Cg~~~AG-GAy~~~T~-~~~tv~~~irrl~ 87 (92)
T 3iz5_m 52 VGIWGCKDCGKVKAG-GAYTMNTA-SAVTVRSTIRRLR 87 (92)
T ss_dssp TTEEECSSSCCEEEC-CSSSSCCH-HHHHHHHHHHHHH
T ss_pred cceEEcCCCCCEEeC-CcccCCCc-HHHHHHHHHHHHH
Confidence 456789999999999 79988764 3333344455544
No 24
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=47.92 E-value=7.7 Score=32.64 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=24.3
Q ss_pred EEEEeCCCCCceecCCCceeeCCcChHHHHHHHHHHhc
Q 010400 52 VIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK 89 (511)
Q Consensus 52 ~~v~~C~~Cgry~~~p~~Wv~~~les~ELL~~~Lkki~ 89 (511)
+-|-.|+.|+..+-+ |-|....+ +-..+...+++++
T Consensus 52 ~GIW~C~~C~~~~AG-GAy~~~T~-~~~tv~~~irrl~ 87 (92)
T 3izc_m 52 AGIWTCSCCKKTVAG-GAYTVSTA-AAATVRSTIRRLR 87 (92)
T ss_dssp TTEEECTTTCCEEEC-CSSSSCCH-HHHHHHHHHHHHH
T ss_pred cceEEcCCCCCEEeC-CcccCCCc-HHHHHHHHHHHHH
Confidence 346789999999999 79988764 3333333455444
No 25
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=45.91 E-value=6.3 Score=33.80 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=26.0
Q ss_pred EEEEeCCCCCceecCCCceeeCCcChHHHHHHHHHHhccc
Q 010400 52 VIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNL 91 (511)
Q Consensus 52 ~~v~~C~~Cgry~~~p~~Wv~~~les~ELL~~~Lkki~gl 91 (511)
+-|-.|+.||..+-+ |-|....+ +-..+...+++++.+
T Consensus 52 ~GIW~C~kCg~~~AG-GAy~~~T~-~a~tv~~~irrl~e~ 89 (103)
T 4a17_Y 52 VGIWKCKPCKKIIAG-GAWELTTP-PAVTAKTTMNRLKKL 89 (103)
T ss_dssp TTEEEETTTTEEEEC-CSSCSSCH-HHHHHHHHHHHHHHH
T ss_pred cceEEcCCCCCEEeC-CcccCCCc-HHHHHHHHHHHHHHH
Confidence 456789999999999 79988764 333444455555443
No 26
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=42.51 E-value=5 Score=30.90 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=20.2
Q ss_pred CcccCccceecccccCcccCCCCcccchhhh
Q 010400 8 FTVPQTVGSVLCCKCGIPMAPNAANMCVACL 38 (511)
Q Consensus 8 ~~~~~~~~~i~C~~CG~~i~~~~~~mC~~C~ 38 (511)
|.-......++|.+||+..--.--..|..|=
T Consensus 9 fGKr~~ktH~~CrRCG~~syH~qK~~Ca~CG 39 (57)
T 1vq8_1 9 QGKKNTTTHTKCRRCGEKSYHTKKKVCSSCG 39 (57)
T ss_dssp HTTCCCCCEEECTTTCSEEEETTTTEETTTC
T ss_pred ccccCCCccccccccCChhhhcccccccccc
Confidence 3333445668999999875544456777774
No 27
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=42.38 E-value=6 Score=34.63 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.1
Q ss_pred EEEeCCCCCceecCCCceeeCC
Q 010400 53 IISHCPECDCYLQPPRTWIKAQ 74 (511)
Q Consensus 53 ~v~~C~~Cgry~~~p~~Wv~~~ 74 (511)
.|-.|+.|+..+-+ |.|....
T Consensus 77 GIW~C~~Cgk~fAG-GAy~~~T 97 (116)
T 3cc2_Z 77 GIWQCSYCDYKFTG-GSYKPET 97 (116)
T ss_dssp TEEEETTTCCEEEC-CSSSSSC
T ss_pred eeEECCCCCCEEEC-CCccccc
Confidence 37899999999998 6898775
No 28
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=41.98 E-value=32 Score=32.06 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=47.8
Q ss_pred EEEEEEEcccCCCCEEEcCchhhhhcCCCCCEEEEE-EeCC-eEEEEcCCCCeEEEecCccccccccccc----cCccce
Q 010400 242 YTFSVEISPICREDLICLPPKVAVSLGNLGPLVICM-KVTN-SIALLDPFTLRHCFLDADQYWRSSFKSL----LTSRQL 315 (511)
Q Consensus 242 ~T~SVrIppickgDlV~l~~k~a~~lG~i~~~~lv~-kv~~-~I~llDP~T~~~~~l~~~~yw~~pf~~l----~~~~~l 315 (511)
.||-+..-.+++|+.|.+.++..+... +-.+ +.++ .|.-+|.+|++..+...+.- +|-.++ +.....
T Consensus 31 ~T~p~q~~~LrkG~yv~IkGrPCKIve-----iStS~KtGKH~ivaiDIFTgkK~edi~Pss--~p~p~~~~hnm~VPvV 103 (176)
T 1khi_A 31 QTVTIPCHHIRLGDILILQGRPCQVIR-----ISTSAATGQHRYLGVDLFTKQLHEESSFVS--NPAPSVVVQTMLGPVF 103 (176)
T ss_dssp CEEEEEGGGCCTTCEEEETTEEEEEEE-----EEECTTTCCEEEEEEETTTCCEEEEECCEE--CSSTTCCEEEEEEECC
T ss_pred ccEEEEhhheeeCCEEEECCeeeEEEE-----EEccCCCCceEEEEEEccCCcEeEEecccc--CCCcccccceecccee
Confidence 488999999999999999997663221 1111 1222 57789999999887766542 111110 111222
Q ss_pred eEEEEEEee
Q 010400 316 VEYIVLDVE 324 (511)
Q Consensus 316 ~ef~Vldve 324 (511)
.+|-||||+
T Consensus 104 k~yQlldI~ 112 (176)
T 1khi_A 104 KQYRVLDMQ 112 (176)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEc
Confidence 389999984
No 29
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=41.79 E-value=15 Score=36.05 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=21.8
Q ss_pred ceecccccCcccCCC---Ccccchhhhcccccc
Q 010400 15 GSVLCCKCGIPMAPN---AANMCVACLRSEVDI 44 (511)
Q Consensus 15 ~~i~C~~CG~~i~~~---~~~mC~~C~~~~~dI 44 (511)
...||+.||.+.... ....|..|-...++-
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~~~yp~ 138 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRERYYPQ 138 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSCEECCC
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCCEecCC
Confidence 357999999987443 345899997776653
No 30
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=41.60 E-value=5.2 Score=31.68 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=20.8
Q ss_pred cchhhhccccccccccCceEEEEeCCCCCceecCC
Q 010400 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67 (511)
Q Consensus 33 mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~~p 67 (511)
-|++|+..++-. . ...++..|..||..|-.|
T Consensus 9 KCp~C~niq~VF-S---hA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 9 KCPDCEHEQVIF-D---HPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp ECTTTCCEEEEE-S---SCSSCEECSSSCCEEEEC
T ss_pred ECCCCCCceEEE-e---cCceEEEcccCCCEEeec
Confidence 355555554432 2 355788999999999766
No 31
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=39.53 E-value=13 Score=28.48 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=20.5
Q ss_pred ccceecccccCcccCC---CCcccchhhhcccc
Q 010400 13 TVGSVLCCKCGIPMAP---NAANMCVACLRSEV 42 (511)
Q Consensus 13 ~~~~i~C~~CG~~i~~---~~~~mC~~C~~~~~ 42 (511)
..+...|..||++--- .--+||-.|+++..
T Consensus 15 G~gs~rC~vcGr~~g~iRkfGl~lcR~cfRe~A 47 (56)
T 3u5c_d 15 GKGSRQCRVCSSHTGLIRKYGLNICRQCFREKA 47 (56)
T ss_dssp SGGGCCCTTTCCCSSEECGGGCCEEHHHHHHHH
T ss_pred CCCcceeecCCCCcccccccCcchhHHHHHHHH
Confidence 3445789999998321 11259999998753
No 32
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=39.28 E-value=12 Score=33.29 Aligned_cols=53 Identities=25% Similarity=0.565 Sum_probs=35.0
Q ss_pred ceecccccCcccCC--CCcccchhhhccccccccccCceEEEEeCCCCCceecC---CCceeeCC-cChHHHHH
Q 010400 15 GSVLCCKCGIPMAP--NAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP---PRTWIKAQ-LESKELLT 82 (511)
Q Consensus 15 ~~i~C~~CG~~i~~--~~~~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~~---p~~Wv~~~-les~ELL~ 82 (511)
....|.+|+.+... +.+..|.+|- ..+|+.||.+... -..|+=.- ...+||+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~---------------~~VC~~C~~~~~~~~~~~~W~C~vC~k~rel~~ 112 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCK---------------KNVCTKCGVETSNNRPHPVWLCKICLEQREVWK 112 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTC---------------CEEETTSEEECCCSSSSCCEEEHHHHHHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCC---------------cccccccCCccCCCCCccceechhhHHHHHHHH
Confidence 34579999998742 4667999994 4689999998732 12576432 13455543
No 33
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=39.23 E-value=6.3 Score=33.87 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=18.4
Q ss_pred ceecccccCcccCC-----C-Ccccchhhh
Q 010400 15 GSVLCCKCGIPMAP-----N-AANMCVACL 38 (511)
Q Consensus 15 ~~i~C~~CG~~i~~-----~-~~~mC~~C~ 38 (511)
...+|-.||.||+. . ...+|++|-
T Consensus 80 ~yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq 109 (112)
T 2kq9_A 80 TFGTCVKCGKRISEDRLKAVPYTPFCQECA 109 (112)
T ss_dssp CCSEETTTTEECCHHHHHHCSCCSSCHHHH
T ss_pred CcCeeCCCCCcccHHHHhcCCCcchhHHHH
Confidence 34589999999975 2 357999995
No 34
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=39.03 E-value=18 Score=29.05 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCceecCCCceeeCC
Q 010400 51 HVIISHCPECDCYLQPPRTWIKAQ 74 (511)
Q Consensus 51 ~~~v~~C~~Cgry~~~p~~Wv~~~ 74 (511)
.+-|-.|+.|+..+-+ |-|....
T Consensus 42 a~GIW~C~~C~~~~AG-GAy~~~T 64 (73)
T 1ffk_W 42 STSIWVCGHCGYKIAG-GAYTPET 64 (73)
T ss_pred EeEEEECCCCCcEEEC-CCccccc
Confidence 3567899999999988 6887653
No 35
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=38.63 E-value=8 Score=33.42 Aligned_cols=25 Identities=24% Similarity=0.776 Sum_probs=19.5
Q ss_pred eecccccCcccCCC------Ccccchhhhcc
Q 010400 16 SVLCCKCGIPMAPN------AANMCVACLRS 40 (511)
Q Consensus 16 ~i~C~~CG~~i~~~------~~~mC~~C~~~ 40 (511)
.-+|-.||.+|++- ...+|++|-..
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~ 86 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQE 86 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHH
Confidence 56899999999752 35799999653
No 36
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=38.50 E-value=14 Score=32.21 Aligned_cols=36 Identities=14% Similarity=0.432 Sum_probs=24.3
Q ss_pred ceecccccCcccCCCCcccchhhhccccccccccCceEEEEeCCCCCceecC
Q 010400 15 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQP 66 (511)
Q Consensus 15 ~~i~C~~CG~~i~~~~~~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~~ 66 (511)
...|||.||....+..+. ........|+.||.....
T Consensus 3 ~~~FCp~CgnlL~~~~~~----------------~~~~~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDK----------------ENNRLLFECRTCSYVEEA 38 (122)
T ss_dssp CCCBCSSSCCBCEEEEET----------------TTTEEEEECSSSSCEEEC
T ss_pred CCCcccccCccCcccccC----------------cCCCCEEECCcCCCeeec
Confidence 457999999876532111 123578899999986654
No 37
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=36.82 E-value=4.7 Score=32.85 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=10.5
Q ss_pred ccceecccccCcccC
Q 010400 13 TVGSVLCCKCGIPMA 27 (511)
Q Consensus 13 ~~~~i~C~~CG~~i~ 27 (511)
....++|-.||....
T Consensus 34 ~~v~I~CnDC~~~s~ 48 (79)
T 2k2d_A 34 MTVDILCNDCNGRST 48 (79)
T ss_dssp CEEEEEESSSCCEEE
T ss_pred CEeEEECCCCCCCcc
Confidence 345678888888654
No 38
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.63 E-value=17 Score=36.65 Aligned_cols=34 Identities=26% Similarity=0.564 Sum_probs=22.8
Q ss_pred ccchhhhccc-cccc--cc-----cCceEEEEeCCCCCceec
Q 010400 32 NMCVACLRSE-VDIT--EG-----LQKHVIISHCPECDCYLQ 65 (511)
Q Consensus 32 ~mC~~C~~~~-~dI~--eg-----Ip~~~~v~~C~~Cgry~~ 65 (511)
..|+.|--+. .... ++ -...+.+..|..|++|+.
T Consensus 223 ~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 223 IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 4677887642 2222 22 235689999999999985
No 39
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=35.74 E-value=20 Score=27.46 Aligned_cols=30 Identities=30% Similarity=0.613 Sum_probs=20.6
Q ss_pred ccceecccccCcccCC---CCcccchhhhcccc
Q 010400 13 TVGSVLCCKCGIPMAP---NAANMCVACLRSEV 42 (511)
Q Consensus 13 ~~~~i~C~~CG~~i~~---~~~~mC~~C~~~~~ 42 (511)
..+...|..||++--- .--+||-.|+++..
T Consensus 15 G~g~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A 47 (56)
T 3iz6_N 15 GAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDA 47 (56)
T ss_dssp CCCCCCCSSCCCSCCCTTTTSCTTHHHHHHTTC
T ss_pred CCCcceeecCCCCcccccccCCcHHHHHHHHHH
Confidence 3445789999998321 12245999999864
No 40
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=34.72 E-value=26 Score=26.62 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=20.7
Q ss_pred ccceecccccCcccC---CCCcccchhhhcccc
Q 010400 13 TVGSVLCCKCGIPMA---PNAANMCVACLRSEV 42 (511)
Q Consensus 13 ~~~~i~C~~CG~~i~---~~~~~mC~~C~~~~~ 42 (511)
+.....|..||++-. ..--+||-.||++..
T Consensus 14 ~r~~nrC~~cGr~rg~iRkfgl~lcR~cFRe~A 46 (55)
T 2xzm_N 14 GKDSKECRVCGARQGLITKYEMMTCRRCFREQA 46 (55)
T ss_dssp SGGGCCCTTTCCSSTTCCCSSSCCCHHHHHHHH
T ss_pred CCCceEeecCCCCcchHHHhCCchhhHHHHHHH
Confidence 455578999999832 112259999999753
No 41
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=32.76 E-value=28 Score=27.73 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=15.3
Q ss_pred ceEEEEeCCCCCceecCCCceeeC
Q 010400 50 KHVIISHCPECDCYLQPPRTWIKA 73 (511)
Q Consensus 50 ~~~~v~~C~~Cgry~~~p~~Wv~~ 73 (511)
....-..|+ ||+.+.-...=+..
T Consensus 17 ~~~kT~~C~-CG~~~~~~k~rif~ 39 (71)
T 1gh9_A 17 EGAKTRKCV-CGRTVNVKDRRIFG 39 (71)
T ss_dssp TTCSEEEET-TTEEEECCSSSCBS
T ss_pred CCCcEEECC-CCCeeeeceEEEEE
Confidence 445678899 99988764333444
No 42
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.54 E-value=7.8 Score=30.43 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.0
Q ss_pred ceEEEEeCCCCCceecCCC
Q 010400 50 KHVIISHCPECDCYLQPPR 68 (511)
Q Consensus 50 ~~~~v~~C~~Cgry~~~p~ 68 (511)
...++..|..||..|-.|.
T Consensus 30 ha~t~V~C~~Cgt~L~~PT 48 (63)
T 3j20_W 30 HPATKVRCLICGATLVEPT 48 (63)
T ss_dssp SCSSCEECSSSCCEEEECC
T ss_pred cCCeEEEccCcCCEEecCC
Confidence 3457789999999997763
No 43
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=32.34 E-value=30 Score=25.81 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=21.4
Q ss_pred eecccccCcccCCCCcccchhhhccccccccccCceEEEEeCCCCCce
Q 010400 16 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCY 63 (511)
Q Consensus 16 ~i~C~~CG~~i~~~~~~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry 63 (511)
.+.||.||... ++..+..+-..--.......|..||-.
T Consensus 15 ~~~Cp~Cg~~~----------~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDT----------AYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSE----------EEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCE----------EEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 56799999742 122222221111134578899999853
No 44
>2r5r_A UPF0343 protein NE1163; APC86493, DUF198, structural genomics, PSI-2, protein structure initiative; 3.05A {Nitrosomonas europaea atcc 19718}
Probab=32.08 E-value=2.4e+02 Score=27.82 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=29.0
Q ss_pred EEEEEEEEEecCeeEEEEEEEEEEEeccCCchhhhhcc--CCcceEEEEEEeecc
Q 010400 113 VKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQA--NPDQWVAAVQLRQHV 165 (511)
Q Consensus 113 vkltvq~ev~~g~~lqq~~~Ve~~v~~~~C~~C~R~~~--~~~~w~AiVQVRq~~ 165 (511)
..+++.++.-+|..+.....|++.+ .+.|| |++.-+ ++|.=++.+.|.-..
T Consensus 129 Y~v~~~~~~~~~~~~~~~l~v~Vp~-~T~CP-CS~~is~~~aHnQRs~~~i~v~~ 181 (271)
T 2r5r_A 129 YEVTFIGEIKHGNQYSFTMKVIVPV-TSLCP-CSKKISDYGAHNQRSHVTISVRT 181 (271)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEEEE-EEECH-HHHHHSSSCCCEEEEEEEEEEEE
T ss_pred EEEEEEEEEcCCceEEEEEEEEEEE-EecCc-ChHhhccCCCccccEEEEEEEEe
Confidence 5566666664552244455555444 35899 998644 345555666665443
No 45
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=31.86 E-value=11 Score=30.91 Aligned_cols=23 Identities=22% Similarity=0.710 Sum_probs=17.1
Q ss_pred ccchhhhccccccccccCceEEEEeCCCCCc
Q 010400 32 NMCVACLRSEVDITEGLQKHVIISHCPECDC 62 (511)
Q Consensus 32 ~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgr 62 (511)
-.|..||.-..+.+. .|||.||-
T Consensus 16 LrC~aCf~~t~~~~k--------~FCp~CGn 38 (79)
T 2con_A 16 LRCHGCFKTTSDMNR--------VFCGHCGN 38 (79)
T ss_dssp EECSSSCCEESCSSC--------CSCSSSCC
T ss_pred eEecccceECCCccc--------ccccccCc
Confidence 468889887655444 68999986
No 46
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=31.43 E-value=49 Score=28.41 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=38.2
Q ss_pred CceeEEEcChhHHHHHHHHhcccCCeEEeecCceeeecCCCCeeeEEEE
Q 010400 195 QGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYT 243 (511)
Q Consensus 195 dGlDfyf~s~~~Ark~v~fl~s~~p~~vkeS~kLVg~D~~~g~~~yr~T 243 (511)
+.++||+-+-...|-+++.|...++++- +|++++=. ++|+..++.+
T Consensus 53 ~~v~~~~vdVde~r~~Sn~IA~~~~V~h-~sPq~il~--k~G~~v~~~S 98 (112)
T 3iv4_A 53 RDMDGYYLIVQQERDLSDYIAKKTNVKH-ESPQAFYF--VNGEMVWNRD 98 (112)
T ss_dssp HTCCEEEEEGGGGHHHHHHHHHHHTCCC-CSSEEEEE--ETTEEEEEEE
T ss_pred CCceEEEEEeecCchhhHHHHHHhCCcc-CCCeEEEE--ECCEEEEEee
Confidence 5789999999999999999999887652 48888884 8999888754
No 47
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=31.01 E-value=15 Score=29.64 Aligned_cols=28 Identities=36% Similarity=0.749 Sum_probs=18.4
Q ss_pred ceecccc-cCcccCCCCcccchhhhcccc
Q 010400 15 GSVLCCK-CGIPMAPNAANMCVACLRSEV 42 (511)
Q Consensus 15 ~~i~C~~-CG~~i~~~~~~mC~~C~~~~~ 42 (511)
..++|.. ||-.=.|...|||..||+...
T Consensus 15 ~~~lC~ngCGFfGnpaT~nlCSkCyrd~~ 43 (74)
T 2c7n_A 15 SDLLCKKGCGYYGNPAWQGFCSKCWREEY 43 (74)
T ss_dssp ---CCTTCSSSCCCGGGTTCCHHHHHHHH
T ss_pred cchhHHhCCCCCCChhhcCccHHHHHHHH
Confidence 4457764 776555556799999999753
No 48
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.66 E-value=12 Score=29.33 Aligned_cols=24 Identities=25% Similarity=0.546 Sum_probs=16.8
Q ss_pred ceecccccCcccCCCCcccchhhh
Q 010400 15 GSVLCCKCGIPMAPNAANMCVACL 38 (511)
Q Consensus 15 ~~i~C~~CG~~i~~~~~~mC~~C~ 38 (511)
..++|.+||+..--.--..|..|=
T Consensus 16 tH~lCrRCG~~syH~qK~~Ca~CG 39 (62)
T 3j21_e 16 THIRCRRCGRVSYNVKKGYCAACG 39 (62)
T ss_dssp CCCBCSSSCSBCEETTTTEETTTC
T ss_pred ceeeecccCcchhccccccccccC
Confidence 568999999975433456677774
No 49
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=30.39 E-value=17 Score=27.05 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=20.6
Q ss_pred ccceeccc--ccCcccCCCCcccchhhhccc
Q 010400 13 TVGSVLCC--KCGIPMAPNAANMCVACLRSE 41 (511)
Q Consensus 13 ~~~~i~C~--~CG~~i~~~~~~mC~~C~~~~ 41 (511)
.....+|. .||--=.|...|||..||++.
T Consensus 15 r~gq~lC~~ngCGFfG~p~t~n~CSkCyre~ 45 (49)
T 3oj3_I 15 RTGTSKCRKAGCVYFGTPENKGFCTLCFIEY 45 (49)
T ss_dssp --CCCBCSSTTCSSBCBGGGTTBCHHHHHHH
T ss_pred hcCccccccCCCCCccCcccCCcchHHHHHH
Confidence 45567887 688655555689999999864
No 50
>3d2o_A UPF0343 protein NGO0387; bimodular tunnel fold, tunneling fold, folate biosynthesis, GTP cyclohydrolase, metalloenzyme, manganese; 2.04A {Neisseria gonorrhoeae} PDB: 3d1t_A
Probab=30.30 E-value=3.4e+02 Score=26.40 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=29.2
Q ss_pred EEEEEEEEEEecCeeEEEEEEEEEEEeccCCchhhhhcc--CCcceEEEEEEeecc
Q 010400 112 KVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQA--NPDQWVAAVQLRQHV 165 (511)
Q Consensus 112 kvkltvq~ev~~g~~lqq~~~Ve~~v~~~~C~~C~R~~~--~~~~w~AiVQVRq~~ 165 (511)
.+.+++.++..+|. +.....|++.+ .+.|| |++.-+ ++|.=++.+.|.-..
T Consensus 119 ~Y~~~~~~~~~~~~-~~~~l~v~V~~-~t~CP-CS~~is~~~~HnQRs~~~i~v~~ 171 (257)
T 3d2o_A 119 DYDVSLTGEMKDGA-YGHSMKVMIPV-TSLCP-CSKEISQYGAHNQRSHVTVSLTS 171 (257)
T ss_dssp EEEEEEEEEEETTE-EEEEEEEEEEE-EEECH-HHHHHSSSCCCEEEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCe-EEEEEEEEEEE-EecCC-CchhhccCCCcCceEEEEEEEEe
Confidence 35556666664453 44455555543 46899 998544 344456666665443
No 51
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=29.96 E-value=24 Score=27.38 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=24.6
Q ss_pred ccceecccccCcccCCC-CcccchhhhccccccccccC
Q 010400 13 TVGSVLCCKCGIPMAPN-AANMCVACLRSEVDITEGLQ 49 (511)
Q Consensus 13 ~~~~i~C~~CG~~i~~~-~~~mC~~C~~~~~dI~egIp 49 (511)
+.....|..||++-.-. .-+||--||++...--+ ||
T Consensus 18 ~r~~nRC~~~GR~rg~iRkfglcR~~FRe~A~~g~-lp 54 (61)
T 2vqe_N 18 VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQ-LP 54 (61)
T ss_dssp GGCCCCCTTTCCCTTCCTTTSSCHHHHHHHHHHTC-SS
T ss_pred CCCceeeecCCCCceeeccCceeHHHHHHHHhCCc-cC
Confidence 44556799999983211 23699999998765555 54
No 52
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=28.69 E-value=6.9 Score=34.13 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=18.0
Q ss_pred cCceEEEEeCCCCCceecCC
Q 010400 48 LQKHVIISHCPECDCYLQPP 67 (511)
Q Consensus 48 Ip~~~~v~~C~~Cgry~~~p 67 (511)
+|+.+.-.+|+.||+++.||
T Consensus 59 lp~~~KR~~Ck~C~s~LiPG 78 (120)
T 1x0t_A 59 IPRKWKRRYCKRCHTFLIPG 78 (120)
T ss_dssp CCTTTTTSBCTTTCCBCCBT
T ss_pred CCHHHHHHhccCCCCEeECC
Confidence 78888888999999999995
No 53
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=28.36 E-value=21 Score=28.37 Aligned_cols=11 Identities=18% Similarity=0.857 Sum_probs=8.6
Q ss_pred ecccccCcccC
Q 010400 17 VLCCKCGIPMA 27 (511)
Q Consensus 17 i~C~~CG~~i~ 27 (511)
-.|..||..++
T Consensus 29 Y~C~~CG~~~e 39 (70)
T 1twf_L 29 YICAECSSKLS 39 (70)
T ss_dssp EECSSSCCEEC
T ss_pred EECCCCCCcce
Confidence 46999998865
No 54
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=27.07 E-value=13 Score=42.02 Aligned_cols=51 Identities=24% Similarity=0.400 Sum_probs=36.0
Q ss_pred ccceecccccCcc---cCCC----------CcccchhhhccccccccccCceEEEEeCCCCCcee
Q 010400 13 TVGSVLCCKCGIP---MAPN----------AANMCVACLRSEVDITEGLQKHVIISHCPECDCYL 64 (511)
Q Consensus 13 ~~~~i~C~~CG~~---i~~~----------~~~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~ 64 (511)
.++-+-|-.||=- |..+ .--||.+|..+-.|... ---++.-+-|+.||=.+
T Consensus 130 ~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~-RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 130 RYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHD-RRFHAQPVACFDCGPSL 193 (761)
T ss_dssp TCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTS-TTTTCTTCCCTTTSCCE
T ss_pred CCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCccc-ccccCCCCcCCccCCee
Confidence 4566779999932 1111 12599999999999887 33446777899999644
No 55
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=26.55 E-value=11 Score=27.33 Aligned_cols=12 Identities=17% Similarity=0.584 Sum_probs=8.2
Q ss_pred EEeCCCCCceec
Q 010400 54 ISHCPECDCYLQ 65 (511)
Q Consensus 54 v~~C~~Cgry~~ 65 (511)
-.+|+.||..+.
T Consensus 24 elvC~~CG~v~~ 35 (50)
T 1pft_A 24 EIVCAKCGYVIE 35 (50)
T ss_dssp EEEESSSCCBCC
T ss_pred eEECcccCCccc
Confidence 367888887553
No 56
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=26.46 E-value=15 Score=39.37 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=21.2
Q ss_pred CCCCccEE--EEccccC---------CcCCCCCeeeeeecC
Q 010400 350 FGKNDTIF--SIRTHLG---------HLLNPGDYALGYDLY 379 (511)
Q Consensus 350 ~g~~~~~~--~~rtHLg---------~~l~~Gd~v~gydl~ 379 (511)
||.+-..| .||.|=| .+|+|||+|||-||.
T Consensus 113 F~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~ 153 (490)
T 3ou5_A 113 FDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 153 (490)
T ss_dssp TTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC--
T ss_pred hCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccC
Confidence 56555444 6899988 569999999999986
No 57
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=25.99 E-value=8.4 Score=33.79 Aligned_cols=20 Identities=20% Similarity=0.575 Sum_probs=17.8
Q ss_pred cCceEEEEeCCCCCceecCC
Q 010400 48 LQKHVIISHCPECDCYLQPP 67 (511)
Q Consensus 48 Ip~~~~v~~C~~Cgry~~~p 67 (511)
+|+.+.-.+|+.|++++.||
T Consensus 54 lp~~~KR~~Ck~C~s~LIPG 73 (123)
T 2k3r_A 54 IPRKWKRRYCKKCHAFLVPG 73 (123)
T ss_dssp CSSTTTTSBCTTTCCBCCBT
T ss_pred CCHHHHHHhccCCCCEeECC
Confidence 77778888999999999995
No 58
>2p09_A A non-biological ATP binding protein with two MUT N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A*
Probab=25.52 E-value=14 Score=28.99 Aligned_cols=30 Identities=33% Similarity=0.757 Sum_probs=23.4
Q ss_pred ecccccCcccCC----C----Ccccchhhhcccccccc
Q 010400 17 VLCCKCGIPMAP----N----AANMCVACLRSEVDITE 46 (511)
Q Consensus 17 i~C~~CG~~i~~----~----~~~mC~~C~~~~~dI~e 46 (511)
..|..|-..--. | +-|||..||-...+|.+
T Consensus 23 rpcvkckvaprdwkvknkhlriynmcktcfnnsidigd 60 (81)
T 2p09_A 23 RPCVKCKVAPRDWKVKNKHLRIYNMCKTCFNNSIDIGD 60 (81)
T ss_dssp SCCTTTSSSCCCEEEETTEEEEESSCHHHHHHHHHHTC
T ss_pred ccceeeeecCccceeccceeeHHHHHHHHhcCceecCc
Confidence 579999875211 2 56999999999999977
No 59
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=25.47 E-value=21 Score=30.96 Aligned_cols=58 Identities=17% Similarity=0.386 Sum_probs=36.6
Q ss_pred eecccccCcccCCC----Ccc--cchhhhccc--cccccc--cC------ceEEEEeCCCCCceecCCCceeeCCc
Q 010400 16 SVLCCKCGIPMAPN----AAN--MCVACLRSE--VDITEG--LQ------KHVIISHCPECDCYLQPPRTWIKAQL 75 (511)
Q Consensus 16 ~i~C~~CG~~i~~~----~~~--mC~~C~~~~--~dI~eg--Ip------~~~~v~~C~~Cgry~~~p~~Wv~~~l 75 (511)
...|..||....|. +.| ||..|.+-. +..... .| .......|.+|+.-..| .|.....
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp--~WRr~~~ 78 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTT--LWRRNAN 78 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCS--SCEECTT
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcc--eeEECCC
Confidence 46799999887774 344 999996421 111110 01 11234799999998877 6998753
No 60
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.35 E-value=20 Score=29.54 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=18.3
Q ss_pred EEEEeCCCCCceecCCCceeeCC
Q 010400 52 VIISHCPECDCYLQPPRTWIKAQ 74 (511)
Q Consensus 52 ~~v~~C~~Cgry~~~p~~Wv~~~ 74 (511)
+-|-.|+.||..+-+ |-|....
T Consensus 51 ~GIW~C~kCg~~~AG-GAy~~~T 72 (83)
T 3j21_i 51 TGIWQCQKCGATFAG-GAYLPVT 72 (83)
T ss_dssp TTEEEETTTCCEEEC-CSSSSSC
T ss_pred cCeEEcCCCCCEEeC-CccccCc
Confidence 456789999999998 7898765
No 61
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=25.14 E-value=2.9e+02 Score=24.34 Aligned_cols=26 Identities=19% Similarity=0.499 Sum_probs=17.7
Q ss_pred eecccccCcccCC-CC------cccchhhhccc
Q 010400 16 SVLCCKCGIPMAP-NA------ANMCVACLRSE 41 (511)
Q Consensus 16 ~i~C~~CG~~i~~-~~------~~mC~~C~~~~ 41 (511)
..||+.||.+... .+ ...|..|-...
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCcc
Confidence 3699999998642 22 24799996443
No 62
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.69 E-value=7.3 Score=29.02 Aligned_cols=27 Identities=26% Similarity=0.658 Sum_probs=18.7
Q ss_pred CccceecccccCccc---CCCCcccchhhh
Q 010400 12 QTVGSVLCCKCGIPM---APNAANMCVACL 38 (511)
Q Consensus 12 ~~~~~i~C~~CG~~i---~~~~~~mC~~C~ 38 (511)
|+.....||+||+.. +++..-||..|=
T Consensus 8 ~~~~~~~CPrCn~~f~~~~sLr~HmkycCp 37 (49)
T 2e72_A 8 QDGGRKICPRCNAQFRVTEALRGHMCYCCP 37 (49)
T ss_dssp CCSSCCCCTTTCCCCSSHHHHHHHHHHHCT
T ss_pred ccCCceeCCcccccccchHHHHhhhhhcCc
Confidence 345778899999874 445556887763
No 63
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.57 E-value=17 Score=30.57 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=6.0
Q ss_pred cccccCcccC
Q 010400 18 LCCKCGIPMA 27 (511)
Q Consensus 18 ~C~~CG~~i~ 27 (511)
.||.||.++.
T Consensus 49 ~CPvCgs~l~ 58 (112)
T 1l8d_A 49 KCPVCGRELT 58 (112)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCCCcCC
Confidence 4666666655
No 64
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=23.54 E-value=5.5 Score=34.07 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=22.3
Q ss_pred CcccchhhhccccccccccCceEEEEeCC---CCCceecC
Q 010400 30 AANMCVACLRSEVDITEGLQKHVIISHCP---ECDCYLQP 66 (511)
Q Consensus 30 ~~~mC~~C~~~~~dI~egIp~~~~v~~C~---~Cgry~~~ 66 (511)
.+++|+.|-..-.+|-. ++. -+|.+|+ +|.|.+..
T Consensus 36 ~~k~Cp~C~~~V~rVe~-~~~-~~if~C~~~~~CkrtyLs 73 (101)
T 3vk6_A 36 GDKMCPGCSDPVQRIEQ-CTR-GSLFMCSIVQGCKRTYLS 73 (101)
T ss_dssp TCCBCTTTCCBCSEEEE-EEG-GGCCCCCCCCCCCCCCSS
T ss_pred cCCCCcCcCCeeeeeEE-ecc-CCEEECCCCCCHHHHhcC
Confidence 34566666666666655 654 6778887 67666544
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=23.15 E-value=27 Score=40.28 Aligned_cols=23 Identities=26% Similarity=0.751 Sum_probs=17.1
Q ss_pred eecccccCcccCC---------CCcccchhhh
Q 010400 16 SVLCCKCGIPMAP---------NAANMCVACL 38 (511)
Q Consensus 16 ~i~C~~CG~~i~~---------~~~~mC~~C~ 38 (511)
..-||.||...++ ++.|+|+.|-
T Consensus 249 ~~~c~~~~~~~~~~~~~~fsfn~p~g~C~~C~ 280 (916)
T 3pih_A 249 NLMCPVCGIGFPEITPKLFSFNSPYGACPNCH 280 (916)
T ss_dssp SCBCTTTCCCCCCCSGGGGCTTSTTTBCTTTT
T ss_pred cccCcccCCccCCCCHhhcCCCCCCCcCCeee
Confidence 3469999976432 2789999995
No 66
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=22.93 E-value=25 Score=24.24 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.4
Q ss_pred ceEEEEeCCCCCcee
Q 010400 50 KHVIISHCPECDCYL 64 (511)
Q Consensus 50 ~~~~v~~C~~Cgry~ 64 (511)
++.-+..|..||+..
T Consensus 17 ~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 17 GRVHLLKCMACGAIR 31 (36)
T ss_dssp TTEEEEEEETTTEEE
T ss_pred CCcEEEEhhcCCCcc
Confidence 577889999999864
No 67
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=22.72 E-value=34 Score=27.91 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=26.9
Q ss_pred ccCCCCEEEcCchhhhhcCCCCCEEEEEEeCCeEEEEcCCCC
Q 010400 250 PICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTL 291 (511)
Q Consensus 250 pickgDlV~l~~k~a~~lG~i~~~~lv~kv~~~I~llDP~T~ 291 (511)
|+.+||+|.++- +|+-=++.|++-.++ +-++++.|-
T Consensus 41 PV~~GD~I~i~~-----~G~~i~F~Vv~t~P~-~V~Vt~~T~ 76 (83)
T 2jv2_A 41 TVRTGDVIGISI-----LGKEVKFKVVQAYPS-PLRVEDRTK 76 (83)
T ss_dssp EECTTCEEEEEE-----TTEEEEEEEEEEESS-SEECCTTSE
T ss_pred CccCCCEEEEee-----CCCEEEEEEEEecCc-cEEECCCcE
Confidence 688999998754 442227888888888 888888774
No 68
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=22.66 E-value=21 Score=28.71 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=16.6
Q ss_pred EEEeCCCCCceecCCCceeeCC
Q 010400 53 IISHCPECDCYLQPPRTWIKAQ 74 (511)
Q Consensus 53 ~v~~C~~Cgry~~~p~~Wv~~~ 74 (511)
-|-.|+.|+..+-+ |-|....
T Consensus 43 GIW~C~~C~~~~AG-GAy~~~T 63 (72)
T 3jyw_9 43 GIWTCSCCKKTVAG-GAYTVST 63 (72)
T ss_dssp SCBCCSSSCCCCCC-SSSSSCC
T ss_pred CeEECCCCCCEEeC-CccccCC
Confidence 45679999999988 6897664
No 69
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=22.62 E-value=67 Score=28.45 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=35.1
Q ss_pred EEEEEEEcccCCCCEEEcCchhhhhc-------CCCCCEEEEEEeCCeEEEEcCCCCeEEEec
Q 010400 242 YTFSVEISPICREDLICLPPKVAVSL-------GNLGPLVICMKVTNSIALLDPFTLRHCFLD 297 (511)
Q Consensus 242 ~T~SVrIppickgDlV~l~~k~a~~l-------G~i~~~~lv~kv~~~I~llDP~T~~~~~l~ 297 (511)
.||.+....|++|..|.+.+++++.+ |..+... -.+.+.|..||+..+..
T Consensus 3 ~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~------vr~k~knl~tG~~~e~t 59 (138)
T 1iz6_A 3 DKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAK------ARIEAVGIFDGKVRSIV 59 (138)
T ss_dssp CEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCE------EEEEEEETTTCCEEEEE
T ss_pred ceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceE------EEEEEEECCCCCEEEEE
Confidence 48899999999999999998754322 1111111 15788999999987544
No 70
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.56 E-value=27 Score=26.93 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=16.2
Q ss_pred cceecccccCcccCCCCcccchhhh
Q 010400 14 VGSVLCCKCGIPMAPNAANMCVACL 38 (511)
Q Consensus 14 ~~~i~C~~CG~~i~~~~~~mC~~C~ 38 (511)
.+-..|+.||... .+-.+|+.|.
T Consensus 28 p~l~~c~~cG~~~--~pH~vc~~CG 50 (60)
T 2zjr_Z 28 PNLTECPQCHGKK--LSHHICPNCG 50 (60)
T ss_dssp CCCEECTTTCCEE--CTTBCCTTTC
T ss_pred CCceECCCCCCEe--CCceEcCCCC
Confidence 3446799999873 4467787775
No 71
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=22.29 E-value=13 Score=30.61 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=20.2
Q ss_pred cchhhhccccccccccCceEEEEeCCCCCceecCC
Q 010400 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67 (511)
Q Consensus 33 mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~~p 67 (511)
-|++|+..++-. . ...++..|..||..|-.|
T Consensus 34 kCp~C~n~q~VF-S---hA~t~V~C~~Cg~~L~~P 64 (81)
T 2xzm_6 34 KCAQCQNIQMIF-S---NAQSTIICEKCSAILCKP 64 (81)
T ss_dssp ECSSSCCEEEEE-T---TCSSCEECSSSCCEEEEE
T ss_pred ECCCCCCeeEEE-e---cCccEEEccCCCCEEeec
Confidence 455555554432 2 345788999999998655
No 72
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=22.16 E-value=51 Score=29.06 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=32.7
Q ss_pred EEEEEEcccCCCCEEEcCchhhhhcCCCCCEEEEEEeCCeEEEEcCCCCeEEEec--Cccccccccc
Q 010400 243 TFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLD--ADQYWRSSFK 307 (511)
Q Consensus 243 T~SVrIppickgDlV~l~~k~a~~lG~i~~~~lv~kv~~~I~llDP~T~~~~~l~--~~~yw~~pf~ 307 (511)
.-.|....+.+||||++... +.++.+.|..-.+..||-- .+.. +.++ .+.||+..|.
T Consensus 60 g~~V~~~~l~pGDLvFf~~~-----~~~~HVGIyiG~g~~IHA~--~~~g-V~i~~l~~~yw~~~~~ 118 (135)
T 2k1g_A 60 GKSVSRSNLRTGDLVLFRAG-----STGRHVGIYIGNNQFVHAS--TSSG-VIISSMNEPYWKKRYN 118 (135)
T ss_dssp SEEECGGGCCTTEEEEEEET-----TTEEEEEEEEETTEEEEEE--TTTE-EEEEETTSHHHHHHEE
T ss_pred CcEecHHHccCCcEEEECCC-----CCCeEEEEEecCCEEEEEC--CCCC-EEEEeCCCHHhhhhee
Confidence 33566778999999999642 2233455554444455542 2222 2222 3579998874
No 73
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.80 E-value=14 Score=30.61 Aligned_cols=31 Identities=23% Similarity=0.614 Sum_probs=20.5
Q ss_pred cchhhhccccccccccCceEEEEeCCCCCceecCC
Q 010400 33 MCVACLRSEVDITEGLQKHVIISHCPECDCYLQPP 67 (511)
Q Consensus 33 mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~~p 67 (511)
-|++|+..++-.. ...++..|..||..|-.|
T Consensus 38 kCp~C~~~~~VFS----hA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 38 KCQGCFNITTVFS----HSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp ECTTTCCEEEEET----TCSSCCCCSSSCCCCSCC
T ss_pred ECCCCCCeeEEEe----cCCcEEEccCCCCEeecC
Confidence 4666665554332 345778899999988766
No 74
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=21.71 E-value=42 Score=34.27 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=26.5
Q ss_pred ceecccccCcccCCCCc--ccchhhhccccccccccCceEEEEeCCCCCceec
Q 010400 15 GSVLCCKCGIPMAPNAA--NMCVACLRSEVDITEGLQKHVIISHCPECDCYLQ 65 (511)
Q Consensus 15 ~~i~C~~CG~~i~~~~~--~mC~~C~~~~~dI~egIp~~~~v~~C~~Cgry~~ 65 (511)
....|..||.+.+.... |+... ...+... =...++++.|+.||..-.
T Consensus 118 n~p~C~~Cg~~~~~~~~~~g~~~p---~~~E~~~-ga~~vE~y~C~~C~~~~r 166 (335)
T 1x3z_A 118 NKPDCNHCGQNTSENMTPLGSQGP---NGEESKF-NCGTVEIYKCNRCGNITR 166 (335)
T ss_dssp SSCCCSSSCSSCCSSEEEEEEECC---CSGGGSS-SEEEEEEEEETTTCCEEE
T ss_pred CCCCccccCCCccccccccCCCCC---Chhhhcc-CCceEEEeecCCCCcccc
Confidence 34579999987432111 33311 1111112 235699999999998653
No 75
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=21.65 E-value=34 Score=34.50 Aligned_cols=50 Identities=12% Similarity=0.298 Sum_probs=29.0
Q ss_pred eecccccCcccCCCC-cc---cchhhhccccccccccC-ceEEEEeCCCCCceecCC
Q 010400 16 SVLCCKCGIPMAPNA-AN---MCVACLRSEVDITEGLQ-KHVIISHCPECDCYLQPP 67 (511)
Q Consensus 16 ~i~C~~CG~~i~~~~-~~---mC~~C~~~~~dI~egIp-~~~~v~~C~~Cgry~~~p 67 (511)
...|+.||.+..+.. -+ .| +.+....++.. .+ -.+.+.+|+.||-.+..+
T Consensus 12 ~~~C~~Cg~~~~~~~~~~~~p~~-~~~~~~~~~~~-~~~~~l~~~~C~~Cg~v~~~~ 66 (416)
T 4e2x_A 12 PTACRVCGGGVQEFLDLGRQPLS-DRFRKPDELDD-EFTYRLAVGRCDSCEMVQLTE 66 (416)
T ss_dssp CEECTTTSCEEEEEEEEEEEECT-TCCBCTTSCSC-CCEEEEEEEEETTTCCEEESS
T ss_pred CCcCCCCCCeeeeeeECCCCCcc-ccCCChhhcCc-cceecceEEECCCCCceeecC
Confidence 356999998832211 11 22 44444444321 22 247899999999877653
No 76
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=20.87 E-value=16 Score=30.68 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=15.4
Q ss_pred CccceecccccCcccCCCCcccchhh
Q 010400 12 QTVGSVLCCKCGIPMAPNAANMCVAC 37 (511)
Q Consensus 12 ~~~~~i~C~~CG~~i~~~~~~mC~~C 37 (511)
.....++|.+||+..--.--..|..|
T Consensus 12 ~~KtHtlCrRCG~~syH~qK~~Ca~C 37 (94)
T 4a18_A 12 HQKTHTLCRRCGKATYHKQKLRCAAC 37 (94)
T ss_dssp CCCCEEECTTTCSEEEETTTTEESSS
T ss_pred CCCccceecCcCchhhhhcccccccc
Confidence 34556889999986432223444444
No 77
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.65 E-value=28 Score=27.62 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=10.9
Q ss_pred cceecccccCcccC
Q 010400 14 VGSVLCCKCGIPMA 27 (511)
Q Consensus 14 ~~~i~C~~CG~~i~ 27 (511)
...+.||.||+++.
T Consensus 7 ~~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 7 TITVNCPTCGKTVV 20 (68)
T ss_dssp CCEEECTTTCCEEE
T ss_pred CCcCcCCCCCCccc
Confidence 45678999999875
Done!