BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010403
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 30/343 (8%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
G+ H + E + PG +L+GTDSHT G G G+G DA V+ LK P
Sbjct: 144 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 202
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ L G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E
Sbjct: 203 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 262
Query: 299 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 350
G V P + KYL D +L E + D + ++S+L+P +
Sbjct: 263 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHI 322
Query: 351 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDF---LAAAKVFLASGKK 399
P +PD +E + I IGSCT ED A AK LA G K
Sbjct: 323 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLK 382
Query: 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA 459
K + P ++++ + +Q+ + G A+ +CG C+G
Sbjct: 383 CKSQFTITPGSEQIRATIER--------DGYAQVLRDVGGIVLAN-ACGPCIGQWDRKDI 433
Query: 460 RMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 501
+ E V++ NRNF GR + E ++ SP A A+ G
Sbjct: 434 KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG 476
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 30/343 (8%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
G+ H + E + PG +L+GTDSHT G G G+G DA V+ LK P
Sbjct: 144 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 202
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ L G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E
Sbjct: 203 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 262
Query: 299 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 350
G V P + KYL D +L E + D + ++S+L+P +
Sbjct: 263 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHI 322
Query: 351 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDF---LAAAKVFLASGKK 399
P +PD +E + I IGSCT ED A AK LA G K
Sbjct: 323 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLK 382
Query: 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA 459
K + P ++++ + +Q+ + G A+ +CG C+G
Sbjct: 383 CKSQFTITPGSEQIRATIER--------DGYAQVLRDVGGIVLAN-ACGPCIGQWDRKDI 433
Query: 460 RMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 501
+ E V++ NRNF GR + E ++ SP A A+ G
Sbjct: 434 KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG 476
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 30/343 (8%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
G+ H + E + PG +L+GTDSHT G G G+G DA V+ LK P
Sbjct: 144 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 202
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ L G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E
Sbjct: 203 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 262
Query: 299 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 350
G V P + KYL D +L E + D + ++S+L+P +
Sbjct: 263 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHI 322
Query: 351 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDF---LAAAKVFLASGKK 399
P +PD +E + I IGSCT ED A AK LA G K
Sbjct: 323 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLK 382
Query: 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA 459
K + P ++++ + +Q+ + G A+ +CG C+G
Sbjct: 383 CKSQFTITPGSEQIRATIER--------DGYAQVLRDVGGIVLAN-ACGPCIGQWDRKDI 433
Query: 460 RMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 501
+ E V++ NRNF GR + E ++ SP A A+ G
Sbjct: 434 KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG 476
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 30/343 (8%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
G+ H + E + PG +L+GTDSHT G G G+G DA V+ LK P
Sbjct: 143 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 201
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ L G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E
Sbjct: 202 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 261
Query: 299 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 350
G V P + KYL D +L E + D + ++S+L+P +
Sbjct: 262 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHI 321
Query: 351 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDF---LAAAKVFLASGKK 399
P +PD +E + I IGSCT ED A AK LA G K
Sbjct: 322 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLK 381
Query: 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA 459
K + P ++++ + +Q+ + G A+ +CG C+G
Sbjct: 382 CKSQFTITPGSEQIRATIER--------DGYAQVLRDVGGIVLAN-ACGPCIGQWDRKDI 432
Query: 460 RMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 501
+ E V++ NRNF GR + E ++ SP A A+ G
Sbjct: 433 KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG 475
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 30/343 (8%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
G+ H + E + PG +L+GTDSHT G G G+G DA V+ LK P
Sbjct: 143 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 201
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ L G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E
Sbjct: 202 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 261
Query: 299 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 350
G V P + KYL D +L E + D + ++S+L+P +
Sbjct: 262 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHI 321
Query: 351 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDF---LAAAKVFLASGKK 399
P +PD +E + I IGSCT ED A AK LA G K
Sbjct: 322 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLK 381
Query: 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA 459
K + P ++++ + +Q+ + G A+ +CG C+G
Sbjct: 382 CKSQFTITPGSEQIRATIER--------DGYAQVLRDVGGIVLAN-ACGPCIGQWDRKDI 432
Query: 460 RMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 501
+ E V++ NRNF GR + E ++ SP A A+ G
Sbjct: 433 KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG 475
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 30/343 (8%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
G+ H + E + PG +L+GTDSHT G G G+G DA V+ LK P
Sbjct: 144 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 202
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ L G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E
Sbjct: 203 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 262
Query: 299 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 350
G V P + KYL D +L E + D + ++S+L+P +
Sbjct: 263 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHI 322
Query: 351 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDF---LAAAKVFLASGKK 399
P +PD +E + I IGSCT ED A AK LA G K
Sbjct: 323 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLK 382
Query: 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA 459
K + P ++++ + +Q+ + G A+ +CG C+G
Sbjct: 383 CKSQFTITPGSEQIRATIER--------DGYAQVLRDVGGIVLAN-ACGPCIGQWDRKDI 433
Query: 460 RMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 501
+ E V++ NRNF GR + E ++ SP A A+ G
Sbjct: 434 KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG 476
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 30/343 (8%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
G+ H + E + PG +L+GTDSHT G G G+G DA V+ LK P
Sbjct: 144 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 202
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ L G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E
Sbjct: 203 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 262
Query: 299 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 350
G V P + KYL D +L E + D + ++S+L+P +
Sbjct: 263 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHI 322
Query: 351 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDF---LAAAKVFLASGKK 399
P +PD +E + I IGSCT ED A AK LA G K
Sbjct: 323 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLK 382
Query: 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA 459
K + P ++++ + +Q+ + G A+ +CG C+G
Sbjct: 383 CKSQFTITPGSEQIRATIER--------DGYAQVLRDVGGIVLAN-ACGPCIGQWDRKDI 433
Query: 460 RMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 501
+ E V++ NRNF GR + E ++ SP A A+ G
Sbjct: 434 KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG 476
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 30/343 (8%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
G+ H + E + PG +L+GTDSHT G G G+G DA V+ LK P
Sbjct: 143 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 201
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ L G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E
Sbjct: 202 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 261
Query: 299 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 350
G V P + KYL D +L E + D + ++S+L+P +
Sbjct: 262 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHI 321
Query: 351 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDF---LAAAKVFLASGKK 399
P +PD +E + I IGSCT ED A AK LA G K
Sbjct: 322 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLK 381
Query: 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA 459
K + P ++++ + +Q+ + G A+ +CG C+G
Sbjct: 382 CKSQFTITPGSEQIRATIER--------DGYAQVLRDVGGIVLAN-ACGPCIGQWDRKDI 432
Query: 460 RMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 501
+ E V++ NRNF GR + E ++ SP A A+ G
Sbjct: 433 KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG 475
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 108/454 (23%), Positives = 166/454 (36%), Gaps = 89/454 (19%)
Query: 130 IIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIK----DLGNFKANPDYKGVCH--- 182
++ DH I R ++ +D E+N + F +K N + P G+ H
Sbjct: 121 LVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVN 180
Query: 183 ------IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVP 236
+ Q+G+ P + L+GTDSHT G G+G +A V+ + + +P
Sbjct: 181 LEYLARVVFDQDGYYYP-DSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239
Query: 237 PTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMV 296
+ + L G+ + + D++L I + G K +EF G V +LS+ +R T+ NM
Sbjct: 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMC 299
Query: 297 VEAGGKNGVVPADGTTFKYL----EDKTSLPYEPVY------------SDEKASFLSEYR 340
E G P D + YL D+ L Y Y + F
Sbjct: 300 PEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVE 359
Query: 341 FDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGK------------------ 382
D+ + P + P P ++ D+K D SC G K
Sbjct: 360 LDLKTVVPCCSGPKRPQDKV---AVSDMKKD---FESCLGAKQGFKGFQVAPEHHNDHKT 413
Query: 383 -----TEDFLAAAKVFLA---SGKKVKVPTFL----------VPATQKVWMDVYTLPVPG 424
TE LA V +A S P+ + V A V + T PG
Sbjct: 414 FIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPG 473
Query: 425 SGGKTCSQIFEEAGCDTPASP--------SCGACLG--GPK-----DTYARMNEPMVCVS 469
SG + +E+G S C C+G GP + + + V V
Sbjct: 474 SG--VVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVL 531
Query: 470 TTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 503
+ NRNF GR+ YLASP A A+ G +
Sbjct: 532 SGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTI 565
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 109/455 (23%), Positives = 168/455 (36%), Gaps = 91/455 (20%)
Query: 130 IIPDHYIFTSDERANRNVDILRDFCMEQNIKYF----YDIKDLGNFKANPDYKGVCH--- 182
++ DH I R ++ +D E+N + F + K N + P G+ H
Sbjct: 141 LVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSKAFRNMRIIPPGSGIIHQVN 200
Query: 183 ------IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVP 236
+ Q+G+ P + L+GTDSHT G G+G +A V+ + + +P
Sbjct: 201 LEYLARVVFDQDGYYYP-DSLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLP 259
Query: 237 PTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMV 296
+ + L G+ + + D++L I + G K +EF G V +LS+ +R T+ NM
Sbjct: 260 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMC 319
Query: 297 VEAGGKNGVVPADGTTFKYL------EDKTSLPYEPV--------YSD--EKASFLSEYR 340
E G P D + KYL E K + + YSD + F
Sbjct: 320 PEYGATATFFPVDEVSIKYLVQTGRDESKVKQIRKYLQAVGMFRDYSDPSQDPDFTQVVE 379
Query: 341 FDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGK------------------ 382
D+ + P + P P ++ D+K D SC G K
Sbjct: 380 LDLKTVVPCCSGPKRPQDKV---AVSDMKKD---FESCLGAKQGFKGFQVAPDHHNDHKT 433
Query: 383 -----TEDFLAAAKVFLA---SGKKVKVPTFL----------VPATQKVWMDVYTLPVPG 424
+E L+ V +A S P+ + V A V V T PG
Sbjct: 434 FIYNDSEFTLSHGSVVIAAITSSTNTSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPG 493
Query: 425 SGGKTCSQIFEEAGCDTPASPSCG---------ACLG--GPK-----DTYARMNEPMVCV 468
SG + E+G P G C+G GP + + + V V
Sbjct: 494 SG--VVTYYLRESGV-MPYLSQLGFDVVGYGSMTCIGNSGPLPEPVVEAITQGDLVAVGV 550
Query: 469 STTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 503
+ NRNF GR+ YLASP A A+ G +
Sbjct: 551 LSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTI 585
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 347 EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFL 406
EP++ P+ PD+ + KID V+IGSC F AA K+ A ++ ++
Sbjct: 679 EPILCAPNDPDDARPLSAVQGEKIDEVFIGSCM-TNIGHFRAAGKLLDAHKGQLPTRLWV 737
Query: 407 VPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMV 466
P T+ MD L G +F ++G P C C+G AR+ +
Sbjct: 738 APPTR---MDAAQLTEEG-----YYSVFGKSGARIEI-PGCSLCMG----NQARVADGAT 784
Query: 467 CVSTTNRNFPGRMG 480
VST+ RNFP R+G
Sbjct: 785 VVSTSTRNFPNRLG 798
>pdb|2XW6|A Chain A, The Crystal Structure Of Methylglyoxal Synthase From
Thermus Sp. Gh5 Bound To Phosphate Ion.
pdb|2XW6|B Chain B, The Crystal Structure Of Methylglyoxal Synthase From
Thermus Sp. Gh5 Bound To Phosphate Ion.
pdb|2XW6|C Chain C, The Crystal Structure Of Methylglyoxal Synthase From
Thermus Sp. Gh5 Bound To Phosphate Ion
Length = 134
Score = 35.4 bits (80), Expect = 0.071, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 287 EERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYE-----PVYSDEK-ASFLSEYR 340
EE + C E + +V A GTT + +E+ T L E P+ D++ + ++E R
Sbjct: 16 EEMVAFCQRHREVLARFPLV-ATGTTGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGR 74
Query: 341 F--DISKLEPLVAKPHSPDNRALAREC 365
I +PL A+PH PD +AL R C
Sbjct: 75 ILAVIFFRDPLTAQPHEPDVQALLRVC 101
>pdb|2X8W|A Chain A, The Crystal Structure Of Methylglyoxal Synthase From
Thermus Sp. Gh5 Bound To Malonate
Length = 132
Score = 35.4 bits (80), Expect = 0.076, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 287 EERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYE-----PVYSDEK-ASFLSEYR 340
EE + C E + +V A GTT + +E+ T L E P+ D++ + ++E R
Sbjct: 14 EEMVAFCQRHREVLARFPLV-ATGTTGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGR 72
Query: 341 F--DISKLEPLVAKPHSPDNRALAREC 365
I +PL A+PH PD +AL R C
Sbjct: 73 ILAVIFFRDPLTAQPHEPDVQALLRVC 99
>pdb|1WO8|A Chain A, Crystal Structure Of Methylglyoxal Synthase From Thermus
Thermophilus Hb8
pdb|1WO8|B Chain B, Crystal Structure Of Methylglyoxal Synthase From Thermus
Thermophilus Hb8
pdb|1WO8|C Chain C, Crystal Structure Of Methylglyoxal Synthase From Thermus
Thermophilus Hb8
pdb|1WO8|D Chain D, Crystal Structure Of Methylglyoxal Synthase From Thermus
Thermophilus Hb8
pdb|1WO8|E Chain E, Crystal Structure Of Methylglyoxal Synthase From Thermus
Thermophilus Hb8
pdb|1WO8|F Chain F, Crystal Structure Of Methylglyoxal Synthase From Thermus
Thermophilus Hb8
Length = 126
Score = 32.0 bits (71), Expect = 0.80, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 308 ADGTTFKYLEDKTSLPYEPVYSDEKASFLS-EYRFDISKL-------EPLVAKPHSPDNR 359
A GTT +++ T L E V S L R K+ +PL AKPH PD +
Sbjct: 34 ATGTTGARIQEATGLAVERVLSGPLGGDLQIGARVAEGKVLAVVFLQDPLTAKPHEPDVQ 93
Query: 360 ALAREC 365
AL R C
Sbjct: 94 ALMRVC 99
>pdb|3NOJ|A Chain A, The Structure Of HmgCHA ALDOLASE FROM THE PROTOCATECHUATE
DEGRADATION Pathway Of Pseudomonas Putida
Length = 238
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 182 HIALAQEGHCRPGEVLLGTDSHTCTAGAFGQF 213
H+A+ Q CRPG+VL+ + S CT G FG
Sbjct: 75 HVAVEQ---CRPGDVLVVSPSSPCTDGYFGDL 103
>pdb|1ODI|A Chain A, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODI|B Chain B, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODI|C Chain C, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODI|D Chain D, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODI|E Chain E, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODI|F Chain F, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODK|A Chain A, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODK|B Chain B, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODK|C Chain C, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODK|D Chain D, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODK|E Chain E, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODK|F Chain F, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODL|A Chain A, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODL|B Chain B, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODL|C Chain C, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODL|D Chain D, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODL|E Chain E, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODL|F Chain F, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODJ|A Chain A, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODJ|B Chain B, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODJ|C Chain C, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODJ|D Chain D, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODJ|E Chain E, Purine Nucleoside Phosphorylase From Thermus Thermophilus
pdb|1ODJ|F Chain F, Purine Nucleoside Phosphorylase From Thermus Thermophilus
Length = 235
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 303 NGVVPADGTTFKYLEDKTSLPYEPV 327
G VP DGTT +YLE + PY PV
Sbjct: 107 QGAVPLDGTTRQYLEGR---PYAPV 128
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 383 TEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTP 442
T+D LA ++ + G KV+ F++ +K+ +DV + G T + F +A D+
Sbjct: 157 TDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 443 ASPSCGACLG-------------GPKDTYARMNEPM-VCVSTTNRNFPGRMG----HKEG 484
G LG G +D + E V + ++FP + + G
Sbjct: 217 FVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPG 276
Query: 485 QIYLASPYTAAASALTGYVT 504
+ Y+AS +T A + + VT
Sbjct: 277 RYYVASAFTLAVNVIAKKVT 296
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 383 TEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTP 442
T+D LA ++ + G KV+ F++ +K+ +DV + G T + F +A D+
Sbjct: 157 TDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 443 ASPSCGACLG-------------GPKDTYARMNEPM-VCVSTTNRNFPGRMG----HKEG 484
G LG G +D + E V + ++FP + + G
Sbjct: 217 FVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPG 276
Query: 485 QIYLASPYTAAASALTGYVT 504
+ Y+AS +T A + + VT
Sbjct: 277 RYYVASAFTLAVNVIAKKVT 296
>pdb|2KMG|A Chain A, The Structure Of The Klca And Ardb Proteins Show A Novel
Fold And Antirestriction Activity Against Type I Dna
Restriction Systems In Vivo But Not In Vitro
Length = 142
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 150 LRDFCMEQNIKY--FYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTA 207
+R C N Y +Y + D G F PD G I + G GE+ T
Sbjct: 42 MRRLCERYNGAYWHYYALSD-GGFYMAPDLAGRLEIEVNGNGF--RGELSADAAGIVATL 98
Query: 208 GAFGQFATGIGNTDAGFVL 226
A GQ A I +TDA L
Sbjct: 99 FALGQLAAEIADTDAADAL 117
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 383 TEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTP 442
T+D LA ++ + G KV+ F++ +K+ +DV + G T + F +A D+
Sbjct: 157 TDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 443 ASPSCGACLG-------------GPKDTYARMNEPM-VCVSTTNRNFPGRMG----HKEG 484
G LG G +D + E V + ++FP + + G
Sbjct: 217 FVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPG 276
Query: 485 QIYLASPYTAAASALTGYVT 504
+ Y+AS +T A + + VT
Sbjct: 277 RYYVASAFTLAVNVIAKAVT 296
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 383 TEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTP 442
T+D LA ++ + G KV+ F++ +K+ +DV + G T + F +A D+
Sbjct: 157 TDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 443 ASPSCGACLG-------------GPKDTYARMNEPM-VCVSTTNRNFPGRMG----HKEG 484
G LG G +D + E V + ++FP + + G
Sbjct: 217 FVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPG 276
Query: 485 QIYLASPYTAAASALTGYVT 504
+ Y+AS +T A + + VT
Sbjct: 277 RYYVASAFTLAVNVIAKKVT 296
>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
Length = 823
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 236 PPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSM 274
PPTL F LDG +YL +L +I ++ G K+M
Sbjct: 110 PPTLLFSLDGFRAEYLHTWGGLLPVISKLKNCGTYTKNM 148
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 236 PPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSM 274
PPTL F LDG +YL +L +I ++ G K+M
Sbjct: 106 PPTLLFSLDGFRAEYLHTWGGLLPVISKLKNCGTYTKNM 144
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 358 NRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPAT 410
N L+ C+ + +DR+ G GKTE + AA + + + K+V V LVP T
Sbjct: 613 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV---LVPTT 662
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,013,825
Number of Sequences: 62578
Number of extensions: 704781
Number of successful extensions: 1509
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1479
Number of HSP's gapped (non-prelim): 29
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)