Query 010403
Match_columns 511
No_of_seqs 151 out of 1341
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 00:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0065 LeuC 3-isopropylmalate 100.0 9E-148 2E-152 1132.1 40.8 417 67-510 1-423 (423)
2 TIGR02083 LEU2 3-isopropylmala 100.0 6E-143 1E-147 1122.3 43.8 415 69-509 1-419 (419)
3 PRK00402 3-isopropylmalate deh 100.0 4E-140 9E-145 1102.5 43.7 416 67-510 1-418 (418)
4 TIGR01343 hacA_fam homoaconita 100.0 5E-140 1E-144 1100.4 43.4 410 70-507 1-412 (412)
5 TIGR02086 IPMI_arch 3-isopropy 100.0 1E-139 2E-144 1097.8 42.6 410 69-508 1-412 (412)
6 PRK12466 isopropylmalate isome 100.0 1E-137 3E-142 1098.9 43.0 416 67-511 2-469 (471)
7 TIGR00170 leuC 3-isopropylmala 100.0 1E-136 2E-141 1090.9 42.9 414 67-509 1-465 (465)
8 PRK05478 isopropylmalate isome 100.0 2E-135 4E-140 1082.0 42.4 415 67-510 1-466 (466)
9 cd01583 IPMI 3-isopropylmalate 100.0 2E-132 5E-137 1035.8 40.0 380 97-503 1-382 (382)
10 TIGR00139 h_aconitase homoacon 100.0 8E-130 2E-134 1074.2 43.0 415 68-510 1-459 (712)
11 cd01585 AcnA_Bact Aconitase ca 100.0 5E-128 1E-132 1001.3 39.2 377 96-503 1-380 (380)
12 TIGR01342 acon_putative aconit 100.0 7E-128 2E-132 1058.7 42.8 410 70-510 1-413 (658)
13 cd01581 AcnB Aconitate hydrata 100.0 3E-127 6E-132 1007.9 39.6 394 71-503 1-436 (436)
14 PRK07229 aconitate hydratase; 100.0 6E-127 1E-131 1052.5 42.7 412 67-509 1-415 (646)
15 PF00330 Aconitase: Aconitase 100.0 3E-127 7E-132 1021.2 28.0 408 70-501 1-465 (465)
16 TIGR01340 aconitase_mito aconi 100.0 1E-124 3E-129 1040.9 43.2 410 67-503 18-472 (745)
17 cd01584 AcnA_Mitochondrial Aco 100.0 9E-124 2E-128 977.7 37.9 379 97-503 1-412 (412)
18 PRK11413 putative hydratase; P 100.0 1E-121 3E-126 1013.9 39.4 409 66-510 32-486 (751)
19 PRK09238 bifunctional aconitat 100.0 3E-121 6E-126 1012.2 40.6 415 57-510 359-816 (835)
20 cd01582 Homoaconitase Homoacon 100.0 1E-120 3E-125 939.1 37.0 351 98-503 2-363 (363)
21 TIGR00117 acnB aconitate hydra 100.0 2E-120 3E-125 1003.7 39.6 412 57-510 363-816 (844)
22 PLN00094 aconitate hydratase 2 100.0 2E-118 5E-123 985.1 38.5 415 57-510 432-890 (938)
23 cd01351 Aconitase Aconitase ca 100.0 2E-114 3E-119 907.3 36.6 378 97-503 1-389 (389)
24 PRK09277 aconitate hydratase; 100.0 2E-112 4E-117 948.2 40.3 417 81-508 70-569 (888)
25 PRK12881 acnA aconitate hydrat 100.0 4E-112 1E-116 946.3 38.4 412 86-508 74-570 (889)
26 cd01586 AcnA_IRP Aconitase A c 100.0 4E-112 1E-116 882.0 32.3 366 97-503 1-404 (404)
27 TIGR01341 aconitase_1 aconitat 100.0 1E-111 3E-116 940.0 36.7 418 81-509 52-560 (876)
28 PTZ00092 aconitate hydratase-l 100.0 5E-111 1E-115 937.3 38.3 430 68-508 62-583 (898)
29 PLN00070 aconitate hydratase 100.0 5E-111 1E-115 938.2 37.6 412 86-508 113-618 (936)
30 TIGR02333 2met_isocit_dHY 2-me 100.0 4E-111 9E-116 933.1 36.0 418 67-504 49-536 (858)
31 COG1048 AcnA Aconitase A [Ener 100.0 8.2E-99 2E-103 826.6 28.4 429 67-507 31-549 (861)
32 KOG0453 Aconitase/homoaconitas 100.0 5.8E-90 1.3E-94 728.7 32.2 418 61-506 50-505 (778)
33 KOG0452 RNA-binding translatio 100.0 2.3E-79 5E-84 643.6 21.0 420 70-504 61-570 (892)
34 COG1049 AcnB Aconitase B [Ener 100.0 5.7E-69 1.2E-73 568.3 21.1 419 55-510 359-818 (852)
35 KOG0454 3-isopropylmalate dehy 100.0 9E-65 1.9E-69 521.5 8.1 497 1-502 1-498 (502)
36 KOG0454 3-isopropylmalate dehy 99.9 1.2E-24 2.6E-29 225.4 7.8 172 323-509 20-225 (502)
37 PF04412 DUF521: Protein of un 97.1 0.0093 2E-07 64.1 14.4 288 139-492 92-395 (400)
38 COG1679 Predicted aconitase [G 97.0 0.012 2.6E-07 62.3 13.3 294 93-453 47-359 (403)
39 cd01355 AcnX Putative Aconitas 93.2 2.7 5.8E-05 45.4 15.2 296 90-452 34-347 (389)
40 cd01355 AcnX Putative Aconitas 42.8 1E+02 0.0022 33.6 8.2 79 368-452 32-116 (389)
41 PRK15447 putative protease; Pr 32.0 83 0.0018 32.6 5.4 78 364-441 23-110 (301)
42 PF04412 DUF521: Protein of un 30.0 3.1E+02 0.0066 30.1 9.4 124 368-504 39-170 (400)
43 PRK13237 tyrosine phenol-lyase 29.0 3.1E+02 0.0067 30.6 9.4 49 337-385 346-394 (460)
44 COG0853 PanD Aspartate 1-decar 28.2 25 0.00055 32.2 0.7 36 371-410 18-62 (126)
45 cd06919 Asp_decarbox Aspartate 27.8 21 0.00046 32.1 0.2 35 372-410 19-62 (111)
46 PRK05449 aspartate alpha-decar 24.0 28 0.00061 32.1 0.2 35 372-410 20-63 (126)
47 COG0129 IlvD Dihydroxyacid deh 24.0 1.2E+02 0.0025 34.8 5.0 35 247-283 55-89 (575)
48 TIGR00223 panD L-aspartate-alp 23.1 30 0.00064 31.9 0.2 35 372-410 20-63 (126)
No 1
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-148 Score=1132.12 Aligned_cols=417 Identities=43% Similarity=0.690 Sum_probs=403.9
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHH
Q 010403 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (511)
Q Consensus 67 ~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~ 146 (511)
++|||+||||++|++...+.|||.+.+++|++|+||.|+|++++.|+ +.|. +||+|+|+++++||++|+.+.+.+++
T Consensus 1 ~~~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~lr-~~g~--kV~~p~k~~~~~DH~vPt~~~~~a~~ 77 (423)
T COG0065 1 SAKTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLR-EAGR--KVRDPEKTVATFDHNVPTPDIKAAEQ 77 (423)
T ss_pred CCccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHHH-HhCC--cccCccceEEEecCCCCCccHHHHHH
Confidence 35999999999999999899999999999999999999999999996 5774 99999999999999999999999999
Q ss_pred HHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHH
Q 010403 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (511)
Q Consensus 147 ~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l 226 (511)
++.+|+||+++||.+|||.++ +|||||+++|+|+++||++|||+|||||||||||+||+|+|+||++.+|
T Consensus 78 ~~~lr~~~ke~Gi~~~~~~g~----------~GI~H~v~pE~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vl 147 (423)
T COG0065 78 QKELRENAKEFGIVNFYDVGD----------QGIVHQVGPEQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVL 147 (423)
T ss_pred HHHHHHHHHHhCCeeeecCCC----------CcEEEEEeccccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHH
Confidence 999999999999999999874 7999999999999999999999999999999999999999999999999
Q ss_pred hcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecc
Q 010403 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (511)
Q Consensus 227 ~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~ 306 (511)
+||++||++||+|+|+++|+|++|||||||||+||+++|++|++|+++||+|+.+++||||+|||||||++|+|||+|||
T Consensus 148 atg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii 227 (423)
T COG0065 148 ATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGII 227 (423)
T ss_pred HhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHhhhcCC--CCCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccc--eeeeeEEEecCCCCC
Q 010403 307 PADGTTFKYLEDKTS--LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--VKIDRVYIGSCTGGK 382 (511)
Q Consensus 307 ~~D~~t~~yl~~r~~--~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~--~~Id~a~IGSCTngr 382 (511)
+||++|++||+.+.. ..|+.|++|+||.|+++|+||+|+|||+|+||++|||+++++|+.+ ++|||||||||||||
T Consensus 228 ~pDe~T~~Y~k~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~~i~iDqVFIGSCTNgR 307 (423)
T COG0065 228 APDETTFEYLKEWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPDPIKIDQVFIGSCTNGR 307 (423)
T ss_pred CCcHhHHHHHHHHhccccccceecCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCCceeeceEEEeccCCcc
Confidence 999999999997655 6789999999999999999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHhcCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccC
Q 010403 383 TEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYAR 460 (511)
Q Consensus 383 ~eDl~~AA~iL~~~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~ 460 (511)
+|||++||+||| |+|++ ||++|+|+|++||+||+++| ++++|++|||+| ..||||||+|+| +|+
T Consensus 308 ieDLr~AA~Ilk--grkva~~Vr~iVvP~S~~V~~qA~~eG--------l~~if~~AG~~~-~~pgCg~CLg~~---~gv 373 (423)
T COG0065 308 IEDLRAAAEILK--GRKVAPGVRAIVVPGSRRVKEQAEKEG--------LDKIFIEAGFEW-REPGCGPCLGMH---PGV 373 (423)
T ss_pred HHHHHHHHHHhc--cCccCCCceEEEecCcHHHHHHHHHcc--------HHHHHHhcCcEE-cCCCCccccccC---CCc
Confidence 999999999999 99996 99999999999999999974 899999999999 599999999995 679
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCCCccccc
Q 010403 461 MNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 510 (511)
Q Consensus 461 l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~Itdpr~~~ 510 (511)
|++||+|+|||||||+||||++++++||+||++|||||++|+|+|||+++
T Consensus 374 L~~gE~c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~dpr~~~ 423 (423)
T COG0065 374 LGPGERCASTSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIVDPRELL 423 (423)
T ss_pred CCCCCEEeeccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEecChhhcC
Confidence 99999999999999999999999999999999999999999999999974
No 2
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=5.7e-143 Score=1122.31 Aligned_cols=415 Identities=41% Similarity=0.754 Sum_probs=402.7
Q ss_pred CcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHHHH
Q 010403 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 148 (511)
Q Consensus 69 ~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~~~ 148 (511)
|||+||||++|++++.|+|||+|++++|++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+.+++.+++++
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~~-~g~-~~V~dp~~v~~~~DH~vpa~~~~~a~~~~ 78 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFKE-YGG-KKVFDPDRVALVPDHFTPNKDIKSAEQCK 78 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHHH-cCC-CcCCCCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 7999999999999988999999999999999999999999999964 774 79999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhc
Q 010403 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 228 (511)
Q Consensus 149 ~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~t 228 (511)
.+|+|+|+|||++|||.+ ++|||||+++|+||++||++++|+||||||+||||+||||||+||++.+|+|
T Consensus 79 ~~r~fa~~~gi~~f~d~g----------~~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~lat 148 (419)
T TIGR02083 79 MMREFAREQGIEKFFEIG----------NMGIEHALLPEEGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMAT 148 (419)
T ss_pred HHHHHHHHcCCcceecCC----------CcceeeeeccccCccCCCeEEEecCCCccccCccceeEEccChHHHHHHHhc
Confidence 999999999999899875 2599999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccC
Q 010403 229 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308 (511)
Q Consensus 229 g~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~ 308 (511)
|++||+|||||+|+|+|+|++||++|||||+|+++|+++|++||+|||+|+++++||+++|||||||++|+|||++||||
T Consensus 149 g~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~ 228 (419)
T TIGR02083 149 GKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPV 228 (419)
T ss_pred CCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhcCCCCCccccCCCCCeecEEEEEECCCceeeeecCCCccccccccccc--ceeeeeEEEecCCCCChHHH
Q 010403 309 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK--DVKIDRVYIGSCTGGKTEDF 386 (511)
Q Consensus 309 D~~t~~yl~~r~~~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~--~~~Id~a~IGSCTngr~eDl 386 (511)
|++|++||+.|+.++|+.+.+|+||.|+++++||||+|||+||+|++|||+.+++|++ +++|||||||||||||+|||
T Consensus 229 D~~t~~yL~~r~~~~~~~~~~D~dA~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~~g~~id~v~IGSCTngr~eDl 308 (419)
T TIGR02083 229 DEITIEYEKGRGKREEKIYKADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGKEEIKIDQVVIGSCTNGRLEDL 308 (419)
T ss_pred ChHHHHHHhhCCccchhcccCCCCCCEEEEEEEEccccceeecCCCCcccCcChhhcccccCccCeEEEEcCCCCChHHH
Confidence 9999999999988899999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhcCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCC
Q 010403 387 LAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEP 464 (511)
Q Consensus 387 ~~AA~iL~~~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~g 464 (511)
++||+||| |+||+ ||++|+|+|++||.+|+++| ++++|++|||+| .+||||+|+|++ +|.+++|
T Consensus 309 ~~AA~iLk--G~kv~~~vr~~v~P~S~~v~~~a~~~G--------~~~~l~~aGa~i-~~pgCg~C~G~~---~g~l~~g 374 (419)
T TIGR02083 309 RLAAEILK--GKTVAPDVRCIIIPGSQNVYLEAMKEG--------LLEIFIEAGAVV-STPTCGPCLGGH---MGILAEG 374 (419)
T ss_pred HHHHHHHc--CCCCCCCccEEEeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-cCCccccccCcC---CCcCCCC
Confidence 99999999 99997 99999999999999999975 799999999999 699999999984 5789999
Q ss_pred cEEEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCCCcccc
Q 010403 465 MVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 509 (511)
Q Consensus 465 ev~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~Itdpr~~ 509 (511)
|+||||+||||+||||++++++|||||+|||||||+|+|+|||++
T Consensus 375 e~~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~itdpr~~ 419 (419)
T TIGR02083 375 ERAISTTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIASPEEV 419 (419)
T ss_pred CEEEEecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcCCcccC
Confidence 999999999999999998999999999999999999999999985
No 3
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=4.2e-140 Score=1102.49 Aligned_cols=416 Identities=49% Similarity=0.839 Sum_probs=402.6
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHH
Q 010403 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (511)
Q Consensus 67 ~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~ 146 (511)
|+|||+||||++|+++. ++|||++++++|++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+.+.+.+++
T Consensus 1 m~~Tl~eKIl~~h~~~~-v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-~g~-~~v~~P~~~~~~~DH~~p~~~~~~a~~ 77 (418)
T PRK00402 1 MGMTLAEKILARHSGRD-VSPGDIVEAKVDLVMAHDITGPLAIKEFEK-IGG-DKVFDPSKIVIVFDHFVPAKDIKSAEQ 77 (418)
T ss_pred CCcCHHHHHHHHhcCCC-CCCCCEEEEECCEEEEecccHHHHHHHHHH-cCC-CccCCCCcEEEECCCCCCCCChhhHHH
Confidence 68999999999999986 789999999999999999999999999964 774 789999999999999999999999999
Q ss_pred HHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHH
Q 010403 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (511)
Q Consensus 147 ~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l 226 (511)
++.+|+|+++|||++||+.+ +|||||+++|+|+++||++++|+||||||+||||+||||||+||++.+|
T Consensus 78 ~~~~r~fa~~~gi~~~~~~g-----------~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l 146 (418)
T PRK00402 78 QKILREFAKEQGIPNFFDVG-----------EGICHQVLPEKGLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAM 146 (418)
T ss_pred HHHHHHHHHHcCCcceeCCC-----------CCEeeEehhhcCccCCCcEEEeCCCCccccCccceEEecccHHHHHHHH
Confidence 99999999999999888764 6999999999999999999999999999999999999999999999999
Q ss_pred hcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecc
Q 010403 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (511)
Q Consensus 227 ~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~ 306 (511)
+||++||+|||+|+|+|+|+|++||++|||||+||++|+.+|++|++|||+|+++++||+++|||||||++|+||+++||
T Consensus 147 ~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NM~~E~GA~~~i~ 226 (418)
T PRK00402 147 ATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIF 226 (418)
T ss_pred hcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHHHHhhhhhcccccCceeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHhhhcCCCCCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHH
Q 010403 307 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDF 386 (511)
Q Consensus 307 ~~D~~t~~yl~~r~~~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl 386 (511)
|+|++|++||+.+..++|+.+.+|++|.|+++++||||+|||+||+|++|||+.+++|+++++|||||||||||||+|||
T Consensus 227 ~~D~~t~~yl~~~~~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g~~id~~~IGSCTngr~eDl 306 (418)
T PRK00402 227 APDEKTLEYLKERAGRDYKPWKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEGTKVDQVFIGSCTNGRLEDL 306 (418)
T ss_pred cCChHHHHHHHhhcccccccccCCCCCCEEEEEEEEcccceeeeecCCCccceeEchhhCCceeeEEEEecCCCCChHHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCC
Q 010403 387 LAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEP 464 (511)
Q Consensus 387 ~~AA~iL~~~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~g 464 (511)
++||+||| |+||+ ||++|+|+|++||++++++| ++++|++|||+| .+||||+|+|++ +|.+.+|
T Consensus 307 ~~aA~il~--G~kv~~~V~~~v~PgS~~V~~~~~~~G--------~~~~l~~aGa~i-~~pgCg~C~G~~---~g~~~~g 372 (418)
T PRK00402 307 RIAAEILK--GRKVAPGVRLIVIPASQKIYLQALKEG--------LIEIFVDAGAVV-STPTCGPCLGGH---MGVLAPG 372 (418)
T ss_pred HHHHHHHc--CCCCCCCccEEEeCCCHHHHHHHHHcC--------cHHHHHHcCCEE-cCCccccccCcC---CCcCCCC
Confidence 99999999 88887 99999999999999999975 799999999999 699999999985 5678999
Q ss_pred cEEEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCCCccccc
Q 010403 465 MVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 510 (511)
Q Consensus 465 ev~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~Itdpr~~~ 510 (511)
|+||||+||||+||||++++++|||||+|||||||+|+|+|||+++
T Consensus 373 e~~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~itdpr~~l 418 (418)
T PRK00402 373 EVCLSTTNRNFKGRMGSPESEVYLASPAVAAASAVTGKITDPREVL 418 (418)
T ss_pred CEEEEecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeCChHHcC
Confidence 9999999999999999999999999999999999999999999985
No 4
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=4.8e-140 Score=1100.40 Aligned_cols=410 Identities=43% Similarity=0.767 Sum_probs=398.2
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHHHHH
Q 010403 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDI 149 (511)
Q Consensus 70 Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~~~~ 149 (511)
||+||||++|+++ .|+|||++++++|++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+.+.+.+++++.
T Consensus 1 Tl~eKIl~~h~~~-~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-~g~-~~v~~P~~v~~~~DH~~p~~~~~~a~~~~~ 77 (412)
T TIGR01343 1 TIAEKILSKHSGK-EVYAGDLIVAEIDQAMVHDITAPLAIRRLEE-YGI-DKVFDPERIVIVVDHVVPASTIKAAEMQKL 77 (412)
T ss_pred CHHHHHHHHhcCC-ccCCCCEEEEECCEEEEecccHHHHHHHHHH-cCC-CcCCCCCcEEEEcCCCCCCCChhHHHHHHH
Confidence 8999999999998 5899999999999999999999999999964 774 799999999999999999999999999999
Q ss_pred HHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcc
Q 010403 150 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 229 (511)
Q Consensus 150 ~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg 229 (511)
+|+||++|||++|||. |+|||||+++|+|+++||++++|+||||||+||||+||||||+||++.+|+||
T Consensus 78 ~r~fa~~~gi~~~~~~-----------g~GI~H~v~~E~g~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg 146 (412)
T TIGR01343 78 AREFVKKTGIKHFFDV-----------GEGICHQVLPEEGLVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATG 146 (412)
T ss_pred HHHHHHHcCCceeecC-----------CCCEEEEEchhhCcCCCCcEEEecCCCcCCcCchhheeecccHHHHHHHHhcC
Confidence 9999999999988865 57999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccCc
Q 010403 230 KVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309 (511)
Q Consensus 230 ~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D 309 (511)
++||||||+|+|+|+|+|++||++|||||+||++|+++|++||++||+|+++++||+++|||||||++|+|||++|||+|
T Consensus 147 ~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ti~NMa~E~GA~~~i~~~D 226 (412)
T TIGR01343 147 KTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPD 226 (412)
T ss_pred cEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHHhhhhccccccCceeeEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHH
Q 010403 310 GTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 389 (511)
Q Consensus 310 ~~t~~yl~~r~~~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~A 389 (511)
++|++||+.+++++|+.+.+|+||.|+++|+||||+|||+||+|++|||+++++|++|++|||||||||||||+|||++|
T Consensus 227 e~t~~yl~~~~~~~~~~~~~D~da~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g~~id~~~IGSCTngr~~Dl~~a 306 (412)
T TIGR01343 227 EKTRAYLKERYKEPFRVYKSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEGIEVDQVFIGSCTNGRIEDLRVA 306 (412)
T ss_pred HHHHHHHHhhCcccccccCCCCCCCEEEEEEEEcccceeeEecCCCCCcEEEhHHhCCCeeeEEEEecCCCCChHHHHHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEE
Q 010403 390 AKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVC 467 (511)
Q Consensus 390 A~iL~~~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~ 467 (511)
|+||| |+||+ ||++|+|+|++||++++++| ++++|++|||+| .+||||+|+|++ +|.+++||+|
T Consensus 307 A~il~--G~kv~~~v~~~v~P~S~~V~~~~~~~G--------~~~~l~~aG~~i-~~pgCg~C~G~~---~g~l~~ge~~ 372 (412)
T TIGR01343 307 AKILK--GRKVAPDVRLIVIPASRAVYLQALKEG--------LIEIFVKAGAVV-STPGCGPCLGRH---QGVLAPGEVC 372 (412)
T ss_pred HHHHc--CCCCCCCCCEEEeCCCHHHHHHHHHcC--------cHHHHHHcCCEE-cCCccccccCcC---CCcCCCCCEE
Confidence 99999 88997 99999999999999999975 799999999999 699999999984 5789999999
Q ss_pred EEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCCCcc
Q 010403 468 VSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 507 (511)
Q Consensus 468 vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~Itdpr 507 (511)
|||+||||+||||++++++|||||+|||||||+|+|+|||
T Consensus 373 vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~itdpr 412 (412)
T TIGR01343 373 ISTSNRNFKGRMGDPNAEIYLASPATAAASAVKGRIADPR 412 (412)
T ss_pred EEecCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccCCCC
Confidence 9999999999999999999999999999999999999997
No 5
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1e-139 Score=1097.84 Aligned_cols=410 Identities=45% Similarity=0.745 Sum_probs=397.6
Q ss_pred CcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHHHH
Q 010403 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 148 (511)
Q Consensus 69 ~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~~~ 148 (511)
|||+||||++|++++ ++|||++++++|++|+||.|+|++++.|++ +| .+||||+|+++++||++|+.+.+.+++++
T Consensus 1 ~Tl~eKIl~~h~~~~-v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-~g--~~v~~p~~~~~~~DH~~p~~~~~~a~~~~ 76 (412)
T TIGR02086 1 MTLAEKILSEKVGRP-VEAGEIVEVEVDLAMAHDGTGPLAIETLRE-LG--ARVEDPEKIVIFFDHVVPPPTVEAANRQK 76 (412)
T ss_pred CCHHHHHHHHhcCCc-cCCCCEEEEECCEEEEecccHHHHHHHHHH-cC--CcccCCCCEEEECCCCCCCCCHHHHHHHH
Confidence 799999999999987 899999999999999999999999999964 77 68999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhc
Q 010403 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 228 (511)
Q Consensus 149 ~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~t 228 (511)
.+|+|++++||++ |+ |++|||||+++|+|+++||++++|+||||||+||||+||||||+||++.+|+|
T Consensus 77 ~~r~fa~~~gi~~-~~-----------~g~GI~H~v~~E~G~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~lat 144 (412)
T TIGR02086 77 EIREFAKEHGIPV-FD-----------VGEGICHQVLVEEGYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALAT 144 (412)
T ss_pred HHHHHHHHcCCcE-EC-----------CCCCeEeEEhhhcCccCCCcEEEecCCCccccchhhheeecccHHHHHHHHhc
Confidence 9999999999985 54 46899999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccC
Q 010403 229 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308 (511)
Q Consensus 229 g~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~ 308 (511)
|++||+|||+|+|+|+|+|++||++|||||+||++|+.+|++||+|||.|+++++||+++|||||||++|+||+++|||+
T Consensus 145 g~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~~i~~~ 224 (412)
T TIGR02086 145 GKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVP 224 (412)
T ss_pred CCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhcCCCCCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHH
Q 010403 309 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 388 (511)
Q Consensus 309 D~~t~~yl~~r~~~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~ 388 (511)
|++|++||+.|++.+|+.+.+|+||.|+++|+||||+|||+||+|++|||+++++++++++|||||||||||||+|||++
T Consensus 225 D~~t~~yl~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~~~~id~~~IGSCTngr~~Dl~~ 304 (412)
T TIGR02086 225 DEETYEYLKKRRGYEFRILRPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEGTEIDQVFIGSCTNGRIEDLRI 304 (412)
T ss_pred CHHHHHHHHhcCCcccccccCCCCCCEEEEEEEEccceeEEecCCCChHhcccchhhcccceeEEEEeccCCCChHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcE
Q 010403 389 AAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMV 466 (511)
Q Consensus 389 AA~iL~~~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev 466 (511)
||+||| |+||+ ||++|+|+|++||++++++| ++++|.+|||+| .+||||+|+|++ +|++++||+
T Consensus 305 aA~vLk--G~kv~~~v~~~v~P~S~~v~~~~~~~G--------~~~~~~~aGa~i-~~pgCg~C~G~~---~g~~~~ge~ 370 (412)
T TIGR02086 305 AAEILE--GRRVHPDVRLIVVPASRKVYERALEEG--------IILTLIRAGAII-CPPGCGPCLGRH---MGVLGDGEV 370 (412)
T ss_pred HHHHHc--CCCCCCCcCEEEeCCCHHHHHHHHHcC--------cHHHHHHcCCEE-cCCccccccCcC---CCcCCCCCE
Confidence 999999 99997 99999999999999999975 799999999999 699999999995 578899999
Q ss_pred EEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCCCccc
Q 010403 467 CVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 508 (511)
Q Consensus 467 ~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~Itdpr~ 508 (511)
||||+||||+||||++++++|||||+|||||||+|+|+|||+
T Consensus 371 ~vsT~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~itdpr~ 412 (412)
T TIGR02086 371 CVSTTNRNFRGRMGSPDAEIYLASPATAAASAVEGYITDPQR 412 (412)
T ss_pred EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccCCCCC
Confidence 999999999999999999999999999999999999999986
No 6
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=1.4e-137 Score=1098.88 Aligned_cols=416 Identities=36% Similarity=0.569 Sum_probs=396.8
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCc------
Q 010403 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD------ 140 (511)
Q Consensus 67 ~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~------ 140 (511)
|+|||+||||++|+++. +++| +|+++||++|+||.|+|++++.|++ +| .+||||+++++++||++|+.+
T Consensus 2 m~~Tl~eKI~~~h~~~~-~~~g-~v~~~vD~~~~hD~t~p~a~~~~~~-~g--~~v~~P~~~~~~~DH~vp~~~~~~~~~ 76 (471)
T PRK12466 2 MPRTLYDKLWDSHTVAR-LDDG-HVLLYIDRHLLNEYTSPQAFSGLRA-RG--RTVRRPDLTLAVVDHVVPTRPGRDRGI 76 (471)
T ss_pred CCcCHHHHHHHHhcCCC-CCCC-EEEEeccEEEEeccccHHHHHHHHH-cC--CcccCCCCeEEEeCCCCCCCccccccc
Confidence 88999999999999987 7777 9999999999999999999999965 66 489999999999999999998
Q ss_pred --HHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCc
Q 010403 141 --ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (511)
Q Consensus 141 --~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG 218 (511)
...+++++++|+||++|||+ ||+++ ||++|||||+++|+|+++||+++||+||||||+||||+||||||
T Consensus 77 ~~~~~~~~~~~~r~~a~~~gi~-~~~~~--------~p~~GI~Hqv~~E~G~~~PG~~ivg~DSHT~t~GalGala~GvG 147 (471)
T PRK12466 77 TDPGGALQVDYLRENCADFGIR-LFDVD--------DPRQGIVHVVAPELGLTLPGMVIVCGDSHTTTYGALGALAFGIG 147 (471)
T ss_pred cCHHHHHHHHHHHHHHHHcCCe-eeccC--------CCCCCEEeEEccccCcccCCceEEccCCCcCCcChhhheEEccC
Confidence 88899999999999999994 67764 57999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccc
Q 010403 219 NTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (511)
Q Consensus 219 ~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E 298 (511)
+||++.+|+||++||+|||+|+|+|+|+|++||++|||||+||++|+.+|++||+|||+|++|++||+++|||||||++|
T Consensus 148 ~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~~~R~Ti~NMa~E 227 (471)
T PRK12466 148 TSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVE 227 (471)
T ss_pred HHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeecccCchhHHHHhhhcCC-----------CCCccccCCCCCeecEEEEEECCCceeeeecCCCccccccccc---
Q 010403 299 AGGKNGVVPADGTTFKYLEDKTS-----------LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE--- 364 (511)
Q Consensus 299 ~GA~~~i~~~D~~t~~yl~~r~~-----------~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e--- 364 (511)
+||+++|||+|++|++||+.+++ +.|+.+++|++|.|+++++||||+|||+||+|++|||+.+++|
T Consensus 228 ~GA~~gi~~~D~~t~~yl~~~~~~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~ 307 (471)
T PRK12466 228 AGARGGLIAPDETTFDYLRGRPRAPKGALWDAALAYWRTLRSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVP 307 (471)
T ss_pred cCceEEEecCChHHHHHHHhCCCchhHHHHHHHHhhhhcccCCCCCceEEEEEEEcccceEeecCCCChhhceEccccCc
Confidence 99999999999999999999875 3477788999999999999999999999999999999999988
Q ss_pred ----------------------------ccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce--eeEEEecCcHHHH
Q 010403 365 ----------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVW 414 (511)
Q Consensus 365 ----------------------------~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--v~~~V~PaS~~V~ 414 (511)
+++++|||||||||||||+|||++||+||| |+||+ ||++|+|+|++||
T Consensus 308 ~~~~~~~~~~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA~ilk--G~kv~~~V~~~v~PgS~~V~ 385 (471)
T PRK12466 308 DPAAEADPARRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAVLR--GRKVAPGVRAMVVPGSGAVR 385 (471)
T ss_pred ChhhhcchhhhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHHHHHHc--CCCCCCCccEEEECCCHHHH
Confidence 678999999999999999999999999999 99997 9999999999999
Q ss_pred HHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHHHH
Q 010403 415 MDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTA 494 (511)
Q Consensus 415 ~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~tv 494 (511)
.+++++| ++++|++|||.| .+||||+|+|++ ++.+++||+||||+||||+||||+ ++++|||||+||
T Consensus 386 ~~~~~~G--------l~~~~~~aG~~i-~~~gCg~C~G~~---~~~~~~ge~~vsT~NRNF~GR~G~-~~~~yLaSP~~v 452 (471)
T PRK12466 386 RQAEAEG--------LARIFIAAGFEW-REPGCSMCLAMN---DDVLAPGERCASTTNRNFEGRQGP-GARTHLMSPAMV 452 (471)
T ss_pred HHHHHCC--------cHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCCCCCCCCCC-CCcEEECCHHHH
Confidence 9999975 799999999999 699999999996 457889999999999999999997 899999999999
Q ss_pred HHHHHcCCCCCcccccC
Q 010403 495 AASALTGYVTDPREFLE 511 (511)
Q Consensus 495 AAsAl~G~Itdpr~~~~ 511 (511)
|||||+|+|+|||++|+
T Consensus 453 AAsAi~G~I~dpr~~l~ 469 (471)
T PRK12466 453 AAAAVAGHITDVRSLLQ 469 (471)
T ss_pred HHHHhCcEeCCHHHhhc
Confidence 99999999999999874
No 7
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=9.9e-137 Score=1090.93 Aligned_cols=414 Identities=36% Similarity=0.569 Sum_probs=393.2
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCc------
Q 010403 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD------ 140 (511)
Q Consensus 67 ~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~------ 140 (511)
|+|||+||||++|+++. ++||+++++||++|+||.|+|++++.|++ +| .+||||+|+++++||++|+.+
T Consensus 1 M~~Tl~eKI~~~h~~~~--~~g~~v~~~vD~~~~hD~t~~~a~~~~~~-~g--~~v~~p~~~~~~~DH~vp~~~~~~~~~ 75 (465)
T TIGR00170 1 MPRTLYEKLFDAHIVYE--AEGETPLLYIDRHLIHEVTSPQAFEGLRQ-AG--RKVRRPQKTFATMDHNIPTQNRDFNIK 75 (465)
T ss_pred CCCCHHHHHHHHhcCCC--CCCCEEEEEeeeeeecccchHHHHHHHHH-cC--CCcCCCcCEEEEeCCCCCCCCcccccc
Confidence 68999999999999986 58999999999999999999999999964 66 489999999999999999976
Q ss_pred -HHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCch
Q 010403 141 -ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (511)
Q Consensus 141 -~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~ 219 (511)
...+++++++|+|+++|||+ ||+.+ ||++|||||+++|+|+++||++|+|+||||||+||||+||||||+
T Consensus 76 ~~~~~~~~~~~r~~a~~~gi~-~~~v~--------~p~~GI~Hqv~~E~g~~~PG~~ivgtDSHT~t~GalGala~GvG~ 146 (465)
T TIGR00170 76 DEVAKIQVTELEKNCKEFGVR-LFDLH--------SVDQGIVHVMGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGT 146 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCe-eeccC--------CCCCCEeCeEccccCcccCCceEEecCCCccccccccceEEccCH
Confidence 37788899999999999995 56654 679999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhccccc
Q 010403 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (511)
Q Consensus 220 td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~ 299 (511)
||++.+|+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|++|++||+++|||||||++|+
T Consensus 147 te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~R~Ti~NMa~E~ 226 (465)
T TIGR00170 147 SEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEA 226 (465)
T ss_pred HHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHHHhhhhhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecccCchhHHHHhhhcCC-----------CCCccccCCCCCeecEEEEEECCCceeeeecCCCccccccccc----
Q 010403 300 GGKNGVVPADGTTFKYLEDKTS-----------LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE---- 364 (511)
Q Consensus 300 GA~~~i~~~D~~t~~yl~~r~~-----------~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e---- 364 (511)
||++||||+|++|++||+.|++ ..|+.+.+|+||.|+++++||||+|||+||+|++|+|+.+++|
T Consensus 227 GA~~gi~~~D~~t~~yl~~r~~~~~~~~~~~~~~~~~~l~~d~~a~Y~~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~ 306 (465)
T TIGR00170 227 GARAGLIAPDETTFEYCKGRPHAPKGKEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNPGQVLPVNSEVPD 306 (465)
T ss_pred CceeeEecCChhHHHHHhcCCcccchhHHHHHHHhhhhccCCCCCceeEEEEEEcccceeeecCCCChhhccCccccCCC
Confidence 9999999999999999998765 2367788999999999999999999999999999999999998
Q ss_pred ---------------------------ccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce--eeEEEecCcHHHHH
Q 010403 365 ---------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWM 415 (511)
Q Consensus 365 ---------------------------~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--v~~~V~PaS~~V~~ 415 (511)
+++++|||||||||||||+|||++||+||| |+||+ ||++|+|+|++||.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~vlk--G~kv~~~V~~~v~PgS~~V~~ 384 (465)
T TIGR00170 307 PESFADPVDKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAAVIK--GRKVADNVKALVVPGSGLVKL 384 (465)
T ss_pred hhhhcchhhhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHHHHhc--CCCcCCCccEEEECCCHHHHH
Confidence 678999999999999999999999999999 99997 99999999999999
Q ss_pred HHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHHHHH
Q 010403 416 DVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAA 495 (511)
Q Consensus 416 ~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~tvA 495 (511)
++.++| ++++|++|||+| .+||||+|+|++ ++++++||+|+||+||||+||||+ ++++|||||+|||
T Consensus 385 ~~~~~G--------l~~~l~~aG~~i-~~~gCg~C~G~~---~~~~~~ge~~isTsNRNF~GR~G~-~~~~yLaSP~~vA 451 (465)
T TIGR00170 385 QAEKEG--------LDKIFIEAGFEW-REPGCSMCLGMN---NDRLPEGERCASTSNRNFEGRQGR-GGRTHLVSPAMAA 451 (465)
T ss_pred HHHHCC--------cHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCCCCCCCCCC-CCCEEEcCHHHHH
Confidence 999975 799999999999 699999999995 457889999999999999999997 7899999999999
Q ss_pred HHHHcCCCCCcccc
Q 010403 496 ASALTGYVTDPREF 509 (511)
Q Consensus 496 AsAl~G~Itdpr~~ 509 (511)
||||+|+|+|||+|
T Consensus 452 AsAi~G~itdpr~~ 465 (465)
T TIGR00170 452 AAAIHGHFVDIRKF 465 (465)
T ss_pred HHHhCceecCcCcC
Confidence 99999999999986
No 8
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=2e-135 Score=1082.01 Aligned_cols=415 Identities=37% Similarity=0.564 Sum_probs=394.4
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcH-----
Q 010403 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE----- 141 (511)
Q Consensus 67 ~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~----- 141 (511)
|+|||+||||++|+++. + |||.++++||++|+||.|+|++++.|++ +| .+||+|+|+++++||++|+.+.
T Consensus 1 m~~tl~eKIl~~h~~~~-~-~g~~v~~~vD~~~~hD~t~~~a~~~~~~-~g--~~v~~p~~~~~~~DH~v~~~~~~~~~~ 75 (466)
T PRK05478 1 MGKTLYDKLWDAHVVHE-E-EDGPDLLYIDRHLVHEVTSPQAFEGLRL-AG--RKVRRPDLTFATMDHNVPTTDRDLPIA 75 (466)
T ss_pred CCCCHHHHHHHHhcCCC-C-CCCEEEEEeccceeecccHHHHHHHHHH-cC--CCccCCCCeEEEcCCCCCCCccccccc
Confidence 67999999999999986 3 9999999999999999999999999965 66 4899999999999999999887
Q ss_pred --HHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCch
Q 010403 142 --RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (511)
Q Consensus 142 --~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~ 219 (511)
..+++++++|+|+++|||+ ||+.+ ||++|||||+++|+|+++||+++||+||||||+||||+||||||+
T Consensus 76 ~~~~~~~~~~~r~~a~~~gi~-~~~~~--------~~~~GI~Hqv~~E~g~~~PG~~ivGtDSHT~t~GalGa~a~GvG~ 146 (466)
T PRK05478 76 DPVSRIQVETLEKNCKEFGIT-LFDLG--------DPRQGIVHVVGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGT 146 (466)
T ss_pred CHHHHHHHHHHHHHHHHcCCe-eeccC--------CCCCCEeCeEccccccccCCceEEecCCCccccchhhheEeCCCH
Confidence 7888899999999999995 56654 678999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhccccc
Q 010403 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (511)
Q Consensus 220 td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~ 299 (511)
+|++.+|+||++||+|||+|+|+|+|+|++||++|||||+||++|+.+|++|++|||+||||++||+++|||||||++|+
T Consensus 147 td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~ 226 (466)
T PRK05478 147 SEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEA 226 (466)
T ss_pred HHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHHHHhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecccCchhHHHHhhhcCCC-----------CCccccCCCCCeecEEEEEECCCceeeeecCCCccccccccc----
Q 010403 300 GGKNGVVPADGTTFKYLEDKTSL-----------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE---- 364 (511)
Q Consensus 300 GA~~~i~~~D~~t~~yl~~r~~~-----------~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e---- 364 (511)
||+++|||+|++|++||++|..+ .|+.+.+|+||+|+++++||||+|||+||+|++|||+++++|
T Consensus 227 GA~~~i~~~De~t~~yl~~r~~~~~~~~~~~a~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~ 306 (466)
T PRK05478 227 GARAGLVAPDETTFEYLKGRPFAPKGEDWDKAVAYWKTLKSDEDAVFDKVVTLDAADIEPQVTWGTNPGQVISIDGKVPD 306 (466)
T ss_pred CceeeeecCCHhHHHHHhcCCccccHHHHHHHHHhhhcccCCCCCceeEEEEEEcccceeeecCCCChhhceEccccCcC
Confidence 99999999999999999987654 467788999999999999999999999999999999999998
Q ss_pred ---------------------------ccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce--eeEEEecCcHHHHH
Q 010403 365 ---------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWM 415 (511)
Q Consensus 365 ---------------------------~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--v~~~V~PaS~~V~~ 415 (511)
+++++|||||||||||||+|||++||+||| |+||+ ||++|+|+|++||+
T Consensus 307 ~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~ilk--G~kv~~~V~~~v~PgS~~V~~ 384 (466)
T PRK05478 307 PEDFADPVKRASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVVK--GRKVAPGVRALVVPGSGLVKA 384 (466)
T ss_pred hhhhcchhhhhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHHHhc--CCCCCCCceEEEECCCHHHHH
Confidence 688999999999999999999999999999 99997 99999999999999
Q ss_pred HHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHHHHH
Q 010403 416 DVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAA 495 (511)
Q Consensus 416 ~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~tvA 495 (511)
+++++| ++++|++|||.| .+||||+|+|++ ++.+++||+||||+||||+|||| +++++|||||+|||
T Consensus 385 ~~~~~G--------l~~~l~~aG~~i-~~~gCg~C~G~~---~~~l~~ge~~vst~NRNF~GR~G-~~~~~yLaSP~~va 451 (466)
T PRK05478 385 QAEAEG--------LDKIFIEAGFEW-REPGCSMCLAMN---PDKLPPGERCASTSNRNFEGRQG-KGGRTHLVSPAMAA 451 (466)
T ss_pred HHHHCC--------cHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCCCCCCCCC-CCCCEEEcCHHHHH
Confidence 999975 799999999999 699999999985 45789999999999999999999 78999999999999
Q ss_pred HHHHcCCCCCccccc
Q 010403 496 ASALTGYVTDPREFL 510 (511)
Q Consensus 496 AsAl~G~Itdpr~~~ 510 (511)
||||+|+|+|||++.
T Consensus 452 AsAi~G~Itdpr~~~ 466 (466)
T PRK05478 452 AAAITGHFVDVRELL 466 (466)
T ss_pred HHHhCCCcCChhhcC
Confidence 999999999999973
No 9
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=2.2e-132 Score=1035.80 Aligned_cols=380 Identities=50% Similarity=0.823 Sum_probs=366.7
Q ss_pred EEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCC
Q 010403 97 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPD 176 (511)
Q Consensus 97 ~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Pp 176 (511)
++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+.+...+++++++|+|++++||+ ||+..
T Consensus 1 ~~~~hD~t~p~a~~~~~~-~g~-~~v~dp~k~~~~~DH~vp~~~~~~~~~~~~~r~~a~~~gi~-~~~~~---------- 67 (382)
T cd01583 1 LHLVHDVTSPQAFEGLRE-AGR-EKVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKEFGIN-FFDVG---------- 67 (382)
T ss_pred CEEEEeccHHHHHHHHHH-hCC-cccCCCCceEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCcc-cccCC----------
Confidence 478999999999999964 774 68999999999999999999999999999999999999995 56652
Q ss_pred CCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHH
Q 010403 177 YKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 256 (511)
Q Consensus 177 g~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDv 256 (511)
++|||||+++|+|+++||++++|+||||||+||||+||||||+||++++|+||++||||||+|+|+|+|+|++||++|||
T Consensus 68 g~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKDv 147 (382)
T cd01583 68 RQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDV 147 (382)
T ss_pred CCCEeeEEeccccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccCchhHHHHhhhcCCCCCccccCCCCCeec
Q 010403 257 ILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFL 336 (511)
Q Consensus 257 iL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~~~~~l~~D~dA~Y~ 336 (511)
||+||++|+.+|++||+|||+|++|++||+++|||||||++|+|||+||||+|++|++||+.|++++|+.+++|+||.|+
T Consensus 148 iL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~yL~~~~~~~~~~~~~D~~a~Y~ 227 (382)
T cd01583 148 ILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAEYD 227 (382)
T ss_pred HHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHHHHhcCccchhhcCCCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce--eeEEEecCcHHHH
Q 010403 337 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVW 414 (511)
Q Consensus 337 ~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--v~~~V~PaS~~V~ 414 (511)
++++||||+|||+||+|++|||+++++|+++++|||||||||||||+|||++||+||| |+||+ ||++|+|+|++||
T Consensus 228 ~~~~iDls~leP~va~P~~P~nv~~v~e~~~~~Id~v~IGSCTNgr~eDl~~AA~iLk--G~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 228 KVVEIDASELEPQVAWPHSPDNVVPVSEVEGIKIDQVFIGSCTNGRLEDLRAAAEILK--GRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred EEEEEEcccceeeEecCCCccceEECcccCCcceeEEEEeccCCCChHHHHHHHHHhc--CCCCCCCccEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 99997 9999999999999
Q ss_pred HHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHHHH
Q 010403 415 MDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTA 494 (511)
Q Consensus 415 ~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~tv 494 (511)
++++++| ++++|++|||.| .+||||+|+|++ +|++++||+||||+||||+||||++++++|||||+||
T Consensus 306 ~~~~~~G--------~~~~l~~aGa~i-~~pgCg~C~G~~---~g~~~~ge~~vsT~NRNF~GRmG~~~~~~yLaSP~~v 373 (382)
T cd01583 306 KQAEKEG--------LIEIFIEAGAEV-RPPGCGACLGGH---MGVLAPGERCVSTSNRNFKGRMGSPGARIYLASPATA 373 (382)
T ss_pred HHHHHCC--------cHHHHHHCCCEE-eCCCcccccCCC---CCcCCCCCEEEEecCCCCCcCCCCCCCcEEECCHHHH
Confidence 9999975 799999999999 699999999995 5689999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 010403 495 AASALTGYV 503 (511)
Q Consensus 495 AAsAl~G~I 503 (511)
|||||+|+|
T Consensus 374 AAsAi~G~i 382 (382)
T cd01583 374 AASAITGEI 382 (382)
T ss_pred HHHHhcccC
Confidence 999999997
No 10
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=8.1e-130 Score=1074.17 Aligned_cols=415 Identities=31% Similarity=0.508 Sum_probs=391.8
Q ss_pred CCcHHHHHHHHhc-----CCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHH
Q 010403 68 AMTLTEKIFSRAS-----EKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDER 142 (511)
Q Consensus 68 ~~Tl~EKIl~~~~-----~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~ 142 (511)
||||+||||++|+ |+ .|+|||+|+++||++|+||.|+|++++ |. ++|. .+||+|+++++++||++|+.+.+
T Consensus 1 ~~Tl~EKIl~~h~v~~~~g~-~v~~G~~i~i~vD~~l~hD~t~p~~~~-~~-~~g~-~~V~~p~~~v~~~DH~v~~~~~~ 76 (712)
T TIGR00139 1 GQNLTEKIVQKYAVGLPEGK-FVHSGDYVSIKPAHCMSHDNSWPCALK-FM-GIGA-SKIHNPDQIVMTLDHDIQNKSDK 76 (712)
T ss_pred CCCHHHHHHHHhcccccCCc-ccCCCCEEEEecCEEEEEeccHHHHHH-HH-HcCC-CccCCCCCEEEEcCCCCCCCCHH
Confidence 5899999999998 44 588999999999999999999999888 43 4784 79999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHH
Q 010403 143 ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDA 222 (511)
Q Consensus 143 ~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~ 222 (511)
.+++|+.+|+||++|||+ ||+ ||+|||||+++|+||++||+++||+||||||+||||+||||+|+||+
T Consensus 77 ~~~~~~~l~~fAkk~Gi~-f~~-----------~g~GI~Hqv~~E~g~a~PG~~ivGsDSHT~t~GalGala~GvG~tDv 144 (712)
T TIGR00139 77 NLKKYKNIEEFAKKHGID-FYP-----------AGRGIGHQIMIEEGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDA 144 (712)
T ss_pred HHHHHHHHHHHHHHhCCe-EEC-----------CCCCeEeEeecccCcccCCeEEEccCcCcCccchhhheeeccchHHH
Confidence 999999999999999995 664 46899999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEec--ccccCCChhhhhhhhhcccccC
Q 010403 223 GFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVG--TTVERLSMEERMTLCNMVVEAG 300 (511)
Q Consensus 223 a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G--~~v~~Ls~~~R~Tl~NMa~E~G 300 (511)
+.+|+||++||+|||+|+|+|+|+||+||++|||||+|+++|+.+|++|++|||+| +|+++||+++|||||||++|+|
T Consensus 145 a~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~~Ls~~~R~TI~NM~~E~G 224 (712)
T TIGR00139 145 AAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWG 224 (712)
T ss_pred HHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhhcCCHHHHhhHhhhhHhhC
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceeecccCchhHHHHhhhcCCC--------------------------CCccccCCCCCeecEEEEEECCCceeeeecCC
Q 010403 301 GKNGVVPADGTTFKYLEDKTSL--------------------------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPH 354 (511)
Q Consensus 301 A~~~i~~~D~~t~~yl~~r~~~--------------------------~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~ 354 (511)
|++++||+|++|++||+.+++. .|..|.+|+||.|+++++||||+|+|+||+|+
T Consensus 225 A~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~aD~~A~Y~~~~~iDLs~leP~vA~P~ 304 (712)
T TIGR00139 225 ALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEIPLKADKDAHYAKELFIDLASLSHYVSGPN 304 (712)
T ss_pred ceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhccCCCCCCCCEEEEEEEEcccceeeeeCCC
Confidence 9999999999999999987421 12567899999999999999999999999999
Q ss_pred Ccccccccccc--cceeeeeEEEecCCCCChHHHHHHHHHHHh-------cCCcce--eeEEEecCcHHHHHHHhcCCCC
Q 010403 355 SPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLA-------SGKKVK--VPTFLVPATQKVWMDVYTLPVP 423 (511)
Q Consensus 355 ~Pdnv~~v~e~--~~~~Id~a~IGSCTngr~eDl~~AA~iL~~-------~G~kv~--v~~~V~PaS~~V~~~a~~~g~~ 423 (511)
+|+|+.+++++ ++++|||||||||||+|+|||++||+||++ +++||+ |+++|+|+|++|++++.++|
T Consensus 305 ~p~~~~~v~el~~~~~~Id~~~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~G-- 382 (712)
T TIGR00139 305 SVKVANPLKDLEAQDIKIDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNG-- 382 (712)
T ss_pred CCCCcCcHHHhhhcCceeeeEEEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCC--
Confidence 99999999999 899999999999999999999999999984 247887 99999999999999999975
Q ss_pred CCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCC
Q 010403 424 GSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 503 (511)
Q Consensus 424 g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~I 503 (511)
++++|++|||+| .+||||+|+|++ ++.+++||+||||+||||+||||++++++|||||+|||||||+|+|
T Consensus 383 ------l~~~l~~AGa~i-~~~gCg~CiG~~---~~~~~~gev~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~I 452 (712)
T TIGR00139 383 ------AWEKLLEAGAIP-LPAGCGPCIGLG---AGLLEPGEVGISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI 452 (712)
T ss_pred ------cHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCcc
Confidence 799999999999 699999999995 5678899999999999999999999999999999999999999999
Q ss_pred CCccccc
Q 010403 504 TDPREFL 510 (511)
Q Consensus 504 tdpr~~~ 510 (511)
+|||+|+
T Consensus 453 tdPr~~~ 459 (712)
T TIGR00139 453 SGPAEVL 459 (712)
T ss_pred CCHHHHh
Confidence 9999985
No 11
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=4.5e-128 Score=1001.27 Aligned_cols=377 Identities=33% Similarity=0.545 Sum_probs=361.5
Q ss_pred eEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCC
Q 010403 96 DILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 175 (511)
Q Consensus 96 D~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~P 175 (511)
|++|+||.|+|++++.|+ ++|. .+||+| ++++++||++|+++.+.+++++++|+|+|+|||+ ||+
T Consensus 1 D~~~~hD~t~p~a~~~~~-~~g~-~~v~~~-~~~~~~DH~~p~~~~~~a~~~~~lr~~a~~~gi~-~~~----------- 65 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-AMGV-DRVRTE-LSVSYVDHNTLQTDFENADDHRFLQTVAARYGIY-FSR----------- 65 (380)
T ss_pred CceEEEeccHHHHHHHHH-HcCC-CeeCCC-CeEEEeCCCCCCCChHHHHHHHHHHHHHHHcCCE-EEC-----------
Confidence 789999999999999996 4885 689999 6999999999999999999999999999999995 665
Q ss_pred CCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHH
Q 010403 176 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 255 (511)
Q Consensus 176 pg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKD 255 (511)
|++|||||+++|+ |++||++++|+||||||+||||+||||||+||++.+|+||++||+|||+|+|+|+|+|++||++||
T Consensus 66 ~g~GI~H~v~~E~-~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKD 144 (380)
T cd01585 66 PGNGICHQVHLER-FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKD 144 (380)
T ss_pred CCCCeeeeecHhh-ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHH
Confidence 4689999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccCchhHHHHhhhcCCC-CCccccCCCCCe
Q 010403 256 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL-PYEPVYSDEKAS 334 (511)
Q Consensus 256 viL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~-~~~~l~~D~dA~ 334 (511)
|||+||++|+.+|++|++|||+|+++++||+++|||||||++|+|||++|||+|++|++||+.+++. +|+.+.+|+||.
T Consensus 145 viL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~yl~~~gr~~~~~~l~~D~~a~ 224 (380)
T cd01585 145 VILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLAAQGREDDWVELAADADAE 224 (380)
T ss_pred HHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCchhccccCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998754 688899999999
Q ss_pred ecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce--eeEEEecCcHH
Q 010403 335 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQK 412 (511)
Q Consensus 335 Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--v~~~V~PaS~~ 412 (511)
|+++++||||+|||+||+|++|||+.|++|+++++|||||||||||||+|||++||+||| |+||+ ||++|+|+|++
T Consensus 225 Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g~~Id~~~IGSCTngr~eDl~~aA~iLk--G~kv~~~V~~~v~P~S~~ 302 (380)
T cd01585 225 YDEEIEIDLSELEPLIARPHSPDNVVPVREVAGIKVDQVAIGSCTNSSYEDLMTVAAILK--GRRVHPHVSMVVAPGSKQ 302 (380)
T ss_pred eEEEEEEEcccceeeecCCCCCCceeEhhhhCCceEEEEEEecCCCCCcHHHHHHHHHHc--CCCCCCCceEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999 99997 99999999999
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHH
Q 010403 413 VWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPY 492 (511)
Q Consensus 413 V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~ 492 (511)
||++++++| ++++|++|||.| .+||||+|+|++. .+++||+||||+||||+||||++++++|||||+
T Consensus 303 V~~~a~~~G--------l~~~l~~aGa~i-~~pgCg~C~G~~~----~~~~ge~~vsT~NRNF~GRmG~~~~~~yLaSP~ 369 (380)
T cd01585 303 VLEMLARNG--------ALADLLAAGARI-LESACGPCIGMGQ----APPTGGVSVRTFNRNFEGRSGTKDDLVYLASPE 369 (380)
T ss_pred HHHHHHHCC--------cHHHHHHcCCEE-eCCCceeccCCCC----CCCCCcEEEEccCCCCCccCCCCCCcEEeCCHH
Confidence 999999975 799999999999 6999999999853 357999999999999999999999999999999
Q ss_pred HHHHHHHcCCC
Q 010403 493 TAAASALTGYV 503 (511)
Q Consensus 493 tvAAsAl~G~I 503 (511)
|||||||+|+|
T Consensus 370 ~vaAsAi~G~i 380 (380)
T cd01585 370 VAAAAALTGVI 380 (380)
T ss_pred HHHHHHhCccC
Confidence 99999999987
No 12
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=7.1e-128 Score=1058.69 Aligned_cols=410 Identities=33% Similarity=0.529 Sum_probs=391.6
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHHHHH
Q 010403 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDI 149 (511)
Q Consensus 70 Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~~~~ 149 (511)
||+||||++|+++..|++|+.|+++||++|+||.|+|+++..|++ +|. ++++ |+++++++||++|+.|.+.+++|++
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~-~g~-~~v~-~~~~~~~~DH~~~~~d~~~a~~~~~ 77 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEA-LEM-DEVK-TELAAQYCDHNMLQFDFKNADDHKF 77 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHH-cCC-CccC-CCCeEEECCCCCCCCChhhHHHHHH
Confidence 899999999999888999999999999999999999999999964 774 5676 8999999999999999999999999
Q ss_pred HHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcc
Q 010403 150 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 229 (511)
Q Consensus 150 ~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg 229 (511)
+|+|+++|||. ||+ ||+|||||++.|+ |++||+++||+||||||+||||+||||||++|++.+|+||
T Consensus 78 l~~~a~~~gi~-~~~-----------pg~GI~Hqv~~E~-~a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~matg 144 (658)
T TIGR01342 78 LMSAAGKFGAW-FSK-----------PGNGICHNVHKEN-FAAPGKTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGE 144 (658)
T ss_pred HHHHHHHhCCe-EEC-----------CCCCEEeeEchhh-ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCC
Confidence 99999999995 664 5789999999987 9999999999999999999999999999999999999999
Q ss_pred eEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccCc
Q 010403 230 KVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309 (511)
Q Consensus 230 ~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D 309 (511)
++||+|||+|+|+|+|+|++||++|||||+|+++|+++|++||+|||+|||+++||+++|||||||++|+||++||||+|
T Consensus 145 ~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D 224 (658)
T TIGR01342 145 AFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSD 224 (658)
T ss_pred cEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHhhhhccchhhCceEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCC-CCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHH
Q 010403 310 GTTFKYLEDKTSL-PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 388 (511)
Q Consensus 310 ~~t~~yl~~r~~~-~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~ 388 (511)
++|++||+.+++. +|..|.+|+||.|+++++||||+|||+||+|++|||+++++|++|++|||||||||||+|+|||++
T Consensus 225 ~~t~~yl~~~~r~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~g~~id~v~IGSCTn~~~~Dl~~ 304 (658)
T TIGR01342 225 DITEAWLAAFDREDDFVDLLADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAGIEVDQVMIGSCTNGAFEDLLP 304 (658)
T ss_pred HHHHHHHHhcCCchheeeccCCCCCcEEEEEEEEccceeeeeeCCCCCCCeeEhHHhCCceeeeEEEeCCCCCChHHHHH
Confidence 9999999998664 588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcE
Q 010403 389 AAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMV 466 (511)
Q Consensus 389 AA~iL~~~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev 466 (511)
||+||+ |+||+ |+++|+|+|++|+.++.++| ++++|++|||.| .+||||+|+|++. .+.++++
T Consensus 305 aA~il~--G~~v~~~v~~~v~PgS~~V~~~~~~~G--------~~~~l~~aGa~i-~~~gCg~CiG~~~----~~~~~~~ 369 (658)
T TIGR01342 305 AAKLLE--GREVHKDTEFAVAPGSKQALELIAQEG--------ALAEFLAAGANF-LEAACGACIGIGF----APASDGV 369 (658)
T ss_pred HHHHhC--CCccCCCccEEEeCCcHHHHHHHHHcC--------cHHHHHHcCCEE-eCCCccccccCCC----CCCCCcE
Confidence 999999 88987 99999999999999999975 799999999999 6999999999853 3668999
Q ss_pred EEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCCCccccc
Q 010403 467 CVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 510 (511)
Q Consensus 467 ~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~Itdpr~~~ 510 (511)
||||+||||+||||++++++|||||+|||||||+|+|+|||++.
T Consensus 370 ~vst~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i~dp~~l~ 413 (658)
T TIGR01342 370 SLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGEIIDPRDLA 413 (658)
T ss_pred EEEccCCCCCccCCCCCCeEEECCHHHHHHHHHcCCcCCHHHhc
Confidence 99999999999999999999999999999999999999999863
No 13
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=2.9e-127 Score=1007.93 Aligned_cols=394 Identities=26% Similarity=0.367 Sum_probs=370.9
Q ss_pred HHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHHHHHH
Q 010403 71 LTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDIL 150 (511)
Q Consensus 71 l~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~~~~~ 150 (511)
|+||||++|++++.|+|||+|++++|++|+||.|+|++++.|++ +|. +||||+|+++++||++|+.+.+.+++|+.+
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-~~~--~v~d~~~~v~~~DH~~p~~~~~~a~~~~~~ 77 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-LAC--LGFSADLVMQSFCHTAAYPKPVDVKTHRTL 77 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-cCC--cccCCccEEEEcCCCCCCCCHHHHHHHHHH
Confidence 58999999999988999999999999999999999999999965 763 899999999999999999999999999999
Q ss_pred HHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcce
Q 010403 151 RDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK 230 (511)
Q Consensus 151 r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~ 230 (511)
|+|+++|||+ ||+. ++|||||+++| +++||++++|+||||||+|| ||||+|++|++.+|+||+
T Consensus 78 r~fa~~~gi~-~~~~-----------g~GI~Hqv~~e--~~~PG~~ivGtDSHT~t~ga---~a~GvG~td~a~~latG~ 140 (436)
T cd01581 78 PDFISNRGGV-ALRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGV 140 (436)
T ss_pred HHHHHHcCCc-EECC-----------CCCeeeeeehh--hccCCceEEeeccccCCCCc---eEEeecHHHHHHHHHhCe
Confidence 9999999995 7775 57999999988 58999999999999999986 899999999999999999
Q ss_pred EEeecCCeeeEEEEeeCCCCCcHHHHHHH----HHHH--------hhccCCCceEEEEecccccCCChhhhhhhhhcccc
Q 010403 231 VLLKVPPTLRFVLDGEMPDYLLAKDLILQ----IIGE--------ISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (511)
Q Consensus 231 ~~lkvPetv~V~l~G~l~~gV~aKDviL~----li~~--------l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E 298 (511)
+||+|||+|+|+|+|+|++||++|||||+ ||++ +|.+|++||+|||.| +++||+++|||||||++|
T Consensus 141 ~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~G--v~~Ls~~~R~Ti~NMa~E 218 (436)
T cd01581 141 MPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIEG--LPDLKVEQAFELTDASAE 218 (436)
T ss_pred eeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEECC--cccCCHhHHHHHHhhhhh
Confidence 99999999999999999999999999997 5777 778889999999964 999999999999999999
Q ss_pred cCceeecccCchhH-HHHhhhc----------CC-----------------CCCccccCCCCCeecEEEEEECCCc-eee
Q 010403 299 AGGKNGVVPADGTT-FKYLEDK----------TS-----------------LPYEPVYSDEKASFLSEYRFDISKL-EPL 349 (511)
Q Consensus 299 ~GA~~~i~~~D~~t-~~yl~~r----------~~-----------------~~~~~l~~D~dA~Y~~~i~iDls~l-eP~ 349 (511)
+|||++|||+|++| ++||+.+ ++ ++|+.+++|+||.|+++|+||||+| ||+
T Consensus 219 ~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~da~Y~~~ieiDls~l~eP~ 298 (436)
T cd01581 219 RSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLLEPDADAEYAAVIEIDLDDIKEPI 298 (436)
T ss_pred hCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccccCCCCCceEEEEEEEhHhCCCCe
Confidence 99999999999988 8999986 21 1345688999999999999999999 999
Q ss_pred eecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce-eeEEEecCcHHHHHHHhcCCCCCCCCc
Q 010403 350 VAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK-VPTFLVPATQKVWMDVYTLPVPGSGGK 428 (511)
Q Consensus 350 VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~-v~~~V~PaS~~V~~~a~~~g~~g~~~~ 428 (511)
||+|++|||+++++|+++++|||+||||||| |+|||++||+||| |+|++ ||++|+|+|++||++++++|
T Consensus 299 VA~P~~pdn~~~v~e~~g~~id~~~IGSCTn-r~eDl~~AA~ilk--g~~~~~vr~~v~P~S~~V~~~~~~~G------- 368 (436)
T cd01581 299 LACPNDPDDVKLLSEVAGKKIDEVFIGSCMT-NIGHFRAAAKILR--GKEFKPTRLWVAPPTRMDWAILQEEG------- 368 (436)
T ss_pred ecCCCChhhceEhHHhcCCccceEEEecCCC-CHHHHHHHHHHHc--CCCCCCCCEEEECCCHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999 9999999999999 77776 99999999999999999964
Q ss_pred hHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCC
Q 010403 429 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 503 (511)
Q Consensus 429 g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~I 503 (511)
++++|++|||.+ .+||||+|+|+ ++.+++||+||||+||||+||||+ ++++|||||+|||||||+|+|
T Consensus 369 -~~~~l~~aGa~v-~~pgCg~C~G~----~~~~~~gev~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 369 -YYSIFGDAGART-EMPGCSLCMGN----QARVADGATVFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred -hHHHHHHcCCEE-CCCccccccCc----CCcCCCCCEEEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 799999999999 69999999997 467899999999999999999998 899999999999999999987
No 14
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=5.7e-127 Score=1052.54 Aligned_cols=412 Identities=35% Similarity=0.572 Sum_probs=393.1
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHH
Q 010403 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (511)
Q Consensus 67 ~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~ 146 (511)
|+|||+||||++|+++..|++||.|+++||++++||.|+|+++..|++ +|. .++|+|..+ +++||++|..+.+.++.
T Consensus 1 m~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~-~G~-~~~~~p~~~-~~~DH~~~~~~~~~~~~ 77 (646)
T PRK07229 1 MGLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEA-MGL-DRVKTELSV-QYVDHNLLQADFENADD 77 (646)
T ss_pred CCcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHH-cCC-CcCCCCCeE-EECCCCCCCCChhhHHH
Confidence 689999999999999877999999999999999999999999999964 784 789999666 78999999999999999
Q ss_pred HHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHH
Q 010403 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (511)
Q Consensus 147 ~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l 226 (511)
++++|+|++++|| +||+ ||+|||||++.|+ |++||+++|||||||||+||||+||||||++|++.+|
T Consensus 78 ~~~l~~~a~~~gi-~~~~-----------~g~GI~Hqv~~E~-~a~PG~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m 144 (646)
T PRK07229 78 HRFLQSVAAKYGI-YFSK-----------PGNGICHQVHLER-FAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAM 144 (646)
T ss_pred HHHHHHHHHHhCC-eEEC-----------CCCCCcceehhhh-ccCCCCEEEeCCCCcCcCCcccccEEccCHHHHHHHH
Confidence 9999999999999 4664 5789999999997 9999999999999999999999999999999999999
Q ss_pred hcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecc
Q 010403 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (511)
Q Consensus 227 ~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~ 306 (511)
+||++||+|||+|+|+|+|+|++||++|||||+|+++|+++|++||+|||+|||+++||+++|||||||++|+||++++|
T Consensus 145 ~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if 224 (646)
T PRK07229 145 AGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAELGATTSIF 224 (646)
T ss_pred hcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHHHHhhhhccccccCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHhhhcCC-CCCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHH
Q 010403 307 PADGTTFKYLEDKTS-LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTED 385 (511)
Q Consensus 307 ~~D~~t~~yl~~r~~-~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eD 385 (511)
|+|++|++||+.+++ ++|..+.+|++|.|+++++||||+|||+||+|++|||++|++|+++.+||+||||||||+|+||
T Consensus 225 ~~D~~t~~yL~~~gr~~~~~~l~~D~~a~Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~~~~I~~a~IGSCTN~~~~D 304 (646)
T PRK07229 225 PSDERTREFLKAQGREDDWVELLADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVAGIKVDQVLIGSCTNSSYED 304 (646)
T ss_pred cCcHHHHHHHHhcCCcccceeccCCCCCCeeEEEEEEccceeeeeecCCCccceeEhHHhCCCeEEEEEEecCCCCChHH
Confidence 999999999999866 4578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCC
Q 010403 386 FLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNE 463 (511)
Q Consensus 386 l~~AA~iL~~~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ 463 (511)
|++||+||+ |+||+ |+++|+|+|++|+.+++++| ++++|++|||.+ .+||||+|+|+. +.+++
T Consensus 305 l~~aA~iL~--G~~v~~~v~~~v~PgS~~V~~~l~~~G--------l~~~l~~aGa~i-~~~gCg~CiG~g----~~~~~ 369 (646)
T PRK07229 305 LMRAASILK--GKKVHPKVSLVINPGSRQVLEMLARDG--------ALADLIAAGARI-LENACGPCIGMG----QAPAT 369 (646)
T ss_pred HHHHHHHhc--CCCCCCCeeEEEeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-eCCCccccccCC----CCCCC
Confidence 999999999 88887 99999999999999999975 799999999999 699999999973 24678
Q ss_pred CcEEEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCCCcccc
Q 010403 464 PMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 509 (511)
Q Consensus 464 gev~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~Itdpr~~ 509 (511)
|++||||+||||+||||++++++|||||+||||||++|+|+|||++
T Consensus 370 ~~~~vst~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~dp~~~ 415 (646)
T PRK07229 370 GNVSLRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVITDPRTL 415 (646)
T ss_pred CcEEEEccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccCChhhc
Confidence 9999999999999999999999999999999999999999999986
No 15
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=3.2e-127 Score=1021.20 Aligned_cols=408 Identities=44% Similarity=0.722 Sum_probs=343.6
Q ss_pred cHHHHHHHHhcCCCC-CCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcH-------
Q 010403 70 TLTEKIFSRASEKPQ-LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE------- 141 (511)
Q Consensus 70 Tl~EKIl~~~~~~~~-v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~------- 141 (511)
||+||||++|++... ..+|++|+++||++|+||+|+|++++.|++ +| .++++|+++++++||++|+.+.
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~-~g--~~v~~p~~v~~~~DH~vp~~~~~~~~~~~ 77 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRA-MG--EKVRDPDKVVLVIDHSVPADDIGSANLQI 77 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHH-HC--HCCHSTTSEEEE--SS--BSS-HHHHHHH
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHH-CC--CceecCCCceEEecCccccccccchhcch
Confidence 899999999999886 567899999999999999999999999975 66 4789999999999999999887
Q ss_pred ---HHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCc
Q 010403 142 ---RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (511)
Q Consensus 142 ---~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG 218 (511)
+..++++++|+|++++|+.+| +.+ +.|||||+++|+|+++||++|||+||||||+||||+||||||
T Consensus 78 ~~~~n~~~~~~l~~~~~~~gi~~~-~~~----------~~GI~Hqv~~E~g~~~PG~~vvg~DSHT~t~GalGa~a~GvG 146 (465)
T PF00330_consen 78 EDARNRERYRFLRWFAKEFGIKFF-DPG----------GPGICHQVLPEEGLVLPGMTVVGTDSHTCTYGALGAFATGVG 146 (465)
T ss_dssp HHHHCHHHHHHHHHHHHHCTTEEE-ETT----------SSBSHHHHHHHHTT-STTEEEEESSTTGGGGGGGTSEEEE--
T ss_pred hhHHHHHHHHHHHHHHHHcCCcee-cCC----------CCCeeeeeehhhccccceeEEEeCCCCcchhhhceeEEeccC
Confidence 344567889999999999764 432 459999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccc
Q 010403 219 NTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (511)
Q Consensus 219 ~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E 298 (511)
+||++++|+||++||+|||+|+|+|+|+|++||++|||||+||++|+.+|++|++|||+|++|++||+++|||||||++|
T Consensus 147 ~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E 226 (465)
T PF00330_consen 147 STDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDDRMTICNMAIE 226 (465)
T ss_dssp HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHHHHHHHHCGGH
T ss_pred HHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeecccCchhHHHHhhhcCCCC-----------CccccCCCCCeecEEEEEECCCceeeeecCCCccccccccccc-
Q 010403 299 AGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK- 366 (511)
Q Consensus 299 ~GA~~~i~~~D~~t~~yl~~r~~~~-----------~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~- 366 (511)
+||++||||||++|++||+.+++.+ |+.|++|+||.|+++++||||+|||+||+|++|||+++++|+.
T Consensus 227 ~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~~D~dA~Y~~~i~iDls~leP~va~P~~P~~~~~v~e~~~ 306 (465)
T PF00330_consen 227 MGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLKSDPDAEYDKVIEIDLSELEPQVAGPHSPDNVVPVSEVAP 306 (465)
T ss_dssp HTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS--TT---SEEEEEEGGG-SSEEE-SSSTTSEEEHHHHHH
T ss_pred cCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhccCCCccCeeEEEEEEcCccccccccCCCCccccccccccc
Confidence 9999999999999999999987643 5778999999999999999999999999999999999987642
Q ss_pred ------------------------------ceeeeeEEEecCCCCChHHHHHHHHHHHhc-CCcce--eeEEEecCcHHH
Q 010403 367 ------------------------------DVKIDRVYIGSCTGGKTEDFLAAAKVFLAS-GKKVK--VPTFLVPATQKV 413 (511)
Q Consensus 367 ------------------------------~~~Id~a~IGSCTngr~eDl~~AA~iL~~~-G~kv~--v~~~V~PaS~~V 413 (511)
+++||+||||||||||+|||++||+||+++ .++++ |+++|+|+|++|
T Consensus 307 ~~~~~~~~v~~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il~~~~~~~v~~~v~~~v~PgS~~v 386 (465)
T PF00330_consen 307 DFASILDPVEREAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGILKGKAVLKVAPGVKTSVVPGSRQV 386 (465)
T ss_dssp HHHHHH----CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHHHHHHCTTS-TSSEEEEE-SBHHH
T ss_pred ccccccccccccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHHHhhchhhccCcceeEEEEcCCCHHH
Confidence 478999999999999999999999999954 12554 999999999999
Q ss_pred HHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCC-CcEEEEecCCCCCCCCCCCCCcEEecCHH
Q 010403 414 WMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNE-PMVCVSTTNRNFPGRMGHKEGQIYLASPY 492 (511)
Q Consensus 414 ~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~-gev~vsT~NRNF~GRmG~~~a~iyLASP~ 492 (511)
+.++.++| ++++|++|||+| .+||||+|+|+++ ..+.+++ +++||||+||||+||||+..+.+|||||+
T Consensus 387 ~~~~~~~G--------l~~~l~~aG~~v-~~~gC~~C~G~~~-~~~~~~~~~~~~vst~NRNF~GR~g~~~~~~yLaSP~ 456 (465)
T PF00330_consen 387 YEQLEREG--------LLEILEEAGFEV-RGPGCGPCIGMSG-LPDVLAPLGEVCVSTSNRNFEGRMGPKDATVYLASPA 456 (465)
T ss_dssp HHHHHHTT--------HHHHHHHTTEEE---SSSGGGGTSBS---CCHCCTTEEEEESSSS-CTTTTTTTTTEEEE--HH
T ss_pred HHHHHHcC--------CchhhhccceEE-ecCCccEEECCCC-CCcccccccceEEEecCCCCCCCCCCCcCeEEECCHH
Confidence 99999964 899999999999 6999999999973 2446677 99999999999999999999999999999
Q ss_pred HHHHHHHcC
Q 010403 493 TAAASALTG 501 (511)
Q Consensus 493 tvAAsAl~G 501 (511)
+||||||+|
T Consensus 457 ~vaA~Ai~G 465 (465)
T PF00330_consen 457 TVAASAIAG 465 (465)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 999999998
No 16
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=1.2e-124 Score=1040.89 Aligned_cols=410 Identities=29% Similarity=0.422 Sum_probs=379.7
Q ss_pred CCCcHHHHHHHHhcCCCC----------CCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCC
Q 010403 67 NAMTLTEKIFSRASEKPQ----------LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYI 136 (511)
Q Consensus 67 ~~~Tl~EKIl~~~~~~~~----------v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~v 136 (511)
|+|||+||||++|++++. |++||+|+++||++|+||.|+|+++..|++ +|. .++|+|. .+++||++
T Consensus 18 ~~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~-~g~-~~v~~P~--~v~~DH~~ 93 (745)
T TIGR01340 18 RPLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMT-CGL-PQVAVPA--SIHCDHLI 93 (745)
T ss_pred CCcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHH-cCC-CCCCCCC--eEEeCCCC
Confidence 789999999999998763 689999999999999999999999998964 774 6999996 55699999
Q ss_pred CCC-----cHHHH-----HHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcC
Q 010403 137 FTS-----DERAN-----RNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCT 206 (511)
Q Consensus 137 p~~-----~~~~a-----~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t 206 (511)
|+. +.+.+ ++++++|+|+++|||+ ||+ ||+|||||+++|+ |++||+++|||||||||
T Consensus 94 ~~~~~~~~~~~~a~~~N~e~~~~lr~~a~~~gi~-~~~-----------~g~GI~Hqv~~E~-~a~PG~~ivGtDSHT~t 160 (745)
T TIGR01340 94 VGQKGGDKDLARAIATNKEVFDFLESAGKKYGIG-FWK-----------PGSGIIHQIVLEN-YAFPGLMMLGTDSHTPN 160 (745)
T ss_pred ccccCccccHHHHhHhHHHHHHHHHHHHHHCCCE-EEC-----------CCCCeeceEchhh-ccCCCCeEEccCCCccc
Confidence 876 55444 7799999999999994 664 5689999999886 99999999999999999
Q ss_pred CCcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCCh
Q 010403 207 AGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSM 286 (511)
Q Consensus 207 ~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~ 286 (511)
+||||+||||||++|++++|+++++||+|||+|+|+|+|+|++||++|||||+|+++|+++|++|++|||+|+|+++||+
T Consensus 161 ~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~G~gv~~Ls~ 240 (745)
T TIGR01340 161 AGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSC 240 (745)
T ss_pred ccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEeCcccccCCH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccccCceeecccCchhHHHHhhhcCCCC-----------CccccCCCCCeecEEEEEECCCceeeeecCCC
Q 010403 287 EERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHS 355 (511)
Q Consensus 287 ~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~~-----------~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~ 355 (511)
++|||||||++|+||++||||+|++|++||+.+++++ |+.+++|+||.|+++|+||||+|||+||+|++
T Consensus 241 ~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~vA~P~~ 320 (745)
T TIGR01340 241 TGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDELIEIDLSKLEPHINGPFT 320 (745)
T ss_pred HHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhcccccCCCCCCeEEEEEEEccceeEeecCCCC
Confidence 9999999999999999999999999999999987653 56788999999999999999999999999999
Q ss_pred cccccccccccc--------eeeeeEEEecCCCCChHHHHHHHHHHHh---cCCcceeeEEEecCcHHHHHHHhcCCCCC
Q 010403 356 PDNRALARECKD--------VKIDRVYIGSCTGGKTEDFLAAAKVFLA---SGKKVKVPTFLVPATQKVWMDVYTLPVPG 424 (511)
Q Consensus 356 Pdnv~~v~e~~~--------~~Id~a~IGSCTngr~eDl~~AA~iL~~---~G~kv~v~~~V~PaS~~V~~~a~~~g~~g 424 (511)
|||+++++|+++ ++|||||||||||||+|||++||+|||+ +|.+.+|+++|+|+|++|+++++++|
T Consensus 321 Pdn~~~v~e~~~~~~~~g~~~~Id~a~IGSCTNgr~~Dl~~AA~ilk~a~~~~v~~~v~~~v~PgS~~V~~~l~~~G--- 397 (745)
T TIGR01340 321 PDLSTPISKFKETVQKNGWPEKLSAGLIGSCTNSSYEDMSRCASIVKDAEQAGLKPKSPFYVTPGSEQIRATLERDG--- 397 (745)
T ss_pred hhcccChHHhCchhhhcCCCceecEEEEEcCCCCCHHHHHHHHHHhhhhhhCCCCCCCCEEEECCCHHHHHHHHHCC---
Confidence 999999999999 7999999999999999999999999994 34444499999999999999999975
Q ss_pred CCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCc--EEEEecCCCCCCCC-CCCCCcEEecCHHHHHHHHHcC
Q 010403 425 SGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPM--VCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 501 (511)
Q Consensus 425 ~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge--v~vsT~NRNF~GRm-G~~~a~iyLASP~tvAAsAl~G 501 (511)
++++|++|||.+ .+||||+|+|++. +.+.+++|| +||||+||||+||| |+..+++|||||+|||||||+|
T Consensus 398 -----l~~~l~~aGa~v-~~~gCg~CiG~~~-~~~~~~~ge~~~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG 470 (745)
T TIGR01340 398 -----ILQTFEKFGGIV-LANACGPCIGQWD-RKDDVKKGEPNTILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAG 470 (745)
T ss_pred -----cHHHHHHcCCEE-eCCCccccccCCC-CcCccCCCCceEEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhc
Confidence 799999999999 6999999999963 356788998 89999999999999 7778999999999999999999
Q ss_pred CC
Q 010403 502 YV 503 (511)
Q Consensus 502 ~I 503 (511)
+|
T Consensus 471 ~i 472 (745)
T TIGR01340 471 SL 472 (745)
T ss_pred ee
Confidence 99
No 17
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=8.6e-124 Score=977.75 Aligned_cols=379 Identities=28% Similarity=0.415 Sum_probs=351.4
Q ss_pred EEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCC-----cHHHH-----HHHHHHHHHHHHcCcceeeccc
Q 010403 97 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS-----DERAN-----RNVDILRDFCMEQNIKYFYDIK 166 (511)
Q Consensus 97 ~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~-----~~~~a-----~~~~~~r~far~~gi~~f~d~~ 166 (511)
++|+||+|+|.+++.|+ ++|. .++|+|+ ++++||++|+. +.+.+ ++++++|+|++++||+ ||+
T Consensus 1 rv~~~D~tg~~a~~~f~-~~g~-~~v~~p~--~~~~DH~~~~~~~~~~~~~~a~~~n~~~~~~~r~~a~~~gi~-~~~-- 73 (412)
T cd01584 1 RVAMQDATAQMALLQFM-SSGL-PKVAVPS--TIHCDHLIEAQVGGEKDLKRAKDINKEVYDFLASAGAKYGIG-FWK-- 73 (412)
T ss_pred CeeEEecccHHHHHHHH-HhCC-CCCCCCC--eEEeCCCccccccCCCchhhhhhhhHHHHHHHHHHHHHcCCe-EEC--
Confidence 47899999999999996 4884 7899999 56799999874 65544 5788999999999995 664
Q ss_pred ccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEee
Q 010403 167 DLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGE 246 (511)
Q Consensus 167 ~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~ 246 (511)
||+|||||+++|+ +++||++++|+||||||+||||+||||||+||++.+|+++.+||+|||+|+|+|+|+
T Consensus 74 ---------~g~GI~Hqv~~E~-~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~ 143 (412)
T cd01584 74 ---------PGSGIIHQIVLEN-YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGK 143 (412)
T ss_pred ---------CCCCeeceEchhh-ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcc
Confidence 4689999999998 999999999999999999999999999999999999997777799999999999999
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccCchhHHHHhhhcCCCC---
Q 010403 247 MPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--- 323 (511)
Q Consensus 247 l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~~--- 323 (511)
|++||++|||||+||++|+.+|++|++|||+|+|+++||+++|||||||++|+|||++|||+|++|++||+.+++++
T Consensus 144 l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~~ 223 (412)
T cd01584 144 LSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRAEIAD 223 (412)
T ss_pred cCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHHHhcCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred ----C--ccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccc--------eeeeeEEEecCCCCChHHHHHH
Q 010403 324 ----Y--EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--------VKIDRVYIGSCTGGKTEDFLAA 389 (511)
Q Consensus 324 ----~--~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~--------~~Id~a~IGSCTngr~eDl~~A 389 (511)
| +.+++|+||.|+++++||||+|||+||+|++|||+++++|+++ ++|||||||||||||+|||++|
T Consensus 224 ~~~~y~~~~l~~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~~g~~~~Id~a~IGSCTNgr~~Dl~~A 303 (412)
T cd01584 224 LADEFKDDLLVADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEKNGWPLDLRVGLIGSCTNSSYEDMGRA 303 (412)
T ss_pred HHHHHHhcccCCCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhccCCceeEEEEEEeccCCCChHHHHHH
Confidence 5 7889999999999999999999999999999999999999999 7999999999999999999999
Q ss_pred HHHHH---hcCCcceeeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCc-
Q 010403 390 AKVFL---ASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPM- 465 (511)
Q Consensus 390 A~iL~---~~G~kv~v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge- 465 (511)
|+||| ++|+|++||++|+|+|++||++++++| ++++|.+|||.| .+||||+|+|++.+ ..+++|+
T Consensus 304 A~ilk~a~~~g~~v~vr~~v~PgS~~V~~~~~~~G--------l~~~l~~aG~~i-~~pgCg~C~G~~~~--~~~~~g~~ 372 (412)
T cd01584 304 ASIAKQALAHGLKCKSIFTITPGSEQIRATIERDG--------LLQTFRDAGGIV-LANACGPCIGQWDR--KDIKKGEK 372 (412)
T ss_pred HHHHhhHHhCCCCCCCcEEEeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-cCCcccccccCCCC--cccCCCCc
Confidence 99998 469999999999999999999999975 799999999999 69999999999642 0354554
Q ss_pred -EEEEecCCCCCCCC-CCCCCcEEecCHHHHHHHHHcCCC
Q 010403 466 -VCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTGYV 503 (511)
Q Consensus 466 -v~vsT~NRNF~GRm-G~~~a~iyLASP~tvAAsAl~G~I 503 (511)
+||||+||||+||| |++.+++|||||+|||||||+|++
T Consensus 373 ~~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsAi~G~~ 412 (412)
T cd01584 373 NTIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAGTL 412 (412)
T ss_pred eEEEEecCCCCCCCCCCCCCceEEeCCHHHHHHHHhcccC
Confidence 89999999999998 677899999999999999999986
No 18
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=1.2e-121 Score=1013.87 Aligned_cols=409 Identities=24% Similarity=0.313 Sum_probs=382.8
Q ss_pred CCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCC--cHHH
Q 010403 66 KNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS--DERA 143 (511)
Q Consensus 66 ~~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~--~~~~ 143 (511)
-|.+||+||||++|++. .+||+|++++|++++||.|+|++++.|++ +|. .+| |+++++++||++|+. +...
T Consensus 32 ~~~~TlaeKIL~~h~~~---~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-~G~-~~v--p~~~v~~~DH~~~~~~g~~~n 104 (751)
T PRK11413 32 AKKGTIAWSILSSHNTS---GNMDKLKIKFDSLASHDITFVGIIQTAKA-SGM-ERF--PLPYVLTNCHNSLCAVGGTIN 104 (751)
T ss_pred HhhCCHHHHHHHHhhCC---CCCCEEEEEcceeeeehhhHHHHHHHHHH-cCC-CcC--CCCEEEECCCCCcCCCCCCcc
Confidence 37789999999999985 48999999999999999999999999964 884 677 999999999999998 2344
Q ss_pred HHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHH
Q 010403 144 NRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAG 223 (511)
Q Consensus 144 a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a 223 (511)
+++|+++|+||++|||. ||+ |++|||||++.|. |++||++++|+||||+ +||||+||||+|++|++
T Consensus 105 ~~~~~~~~~~a~k~Gi~-f~~-----------pg~GI~Hqv~~E~-~a~PG~~ivGtDSHT~-~GalG~la~GvGgtd~a 170 (751)
T PRK11413 105 EDDHVFGLSAAQKYGGI-FVP-----------PHIAVIHQYMREM-MAGGGKMILGSDSHTR-YGALGTMAVGEGGGELV 170 (751)
T ss_pred HHHHHHHHHHHHHcCCc-EEC-----------CCCCeECcCchhh-ccCCCcEEEeeCcCcc-cchhhhceeCCChHHHH
Confidence 47999999999999994 664 5789999999887 9999999999999995 99999999999999999
Q ss_pred HHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCC-CceEEEEecccccCCChhhhhhhhhcccccCce
Q 010403 224 FVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGA-TYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 302 (511)
Q Consensus 224 ~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~-~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~ 302 (511)
.+|+++++||+|||+|+|+|+|+|++||++|||||+||++++++|+ +||+|||+||||++||+++|||||||++|+||+
T Consensus 171 ~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R~TI~NM~~E~GA~ 250 (751)
T PRK11413 171 KQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNGVDVMTTETTCL 250 (751)
T ss_pred HHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHHhhhhhcccccCce
Confidence 9999999999999999999999999999999999999999999999 799999999999999999999999999999999
Q ss_pred eecccCchhHHHHhhhcCCC-CCccccCCCCCeecEEEEEECCCceeeeecCCCccccccccccc---------------
Q 010403 303 NGVVPADGTTFKYLEDKTSL-PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK--------------- 366 (511)
Q Consensus 303 ~~i~~~D~~t~~yl~~r~~~-~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~--------------- 366 (511)
++|||+|++|++||+.+++. +|+.|.+|++|.|+++++||||+|||+||+|++|||+.+++|+.
T Consensus 251 ~~ifp~De~t~~yL~~~gr~~~~~~l~~D~~A~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~~~~~~ 330 (751)
T PRK11413 251 SSIWQTDEEVHNWLALHGRGQDYCELNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVEIESE 330 (751)
T ss_pred EEEecCcHHHHHHHHhCCChhhceeccCCCCCCeeEEEEEEcccceeeecCCCChhhCcChhhcccchhhhcchhhhhhh
Confidence 99999999999999998854 78899999999999999999999999999999999999999984
Q ss_pred ------------------ceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce---eeEEEecCcHHHHHHHhcCCCCCC
Q 010403 367 ------------------DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK---VPTFLVPATQKVWMDVYTLPVPGS 425 (511)
Q Consensus 367 ------------------~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~---v~~~V~PaS~~V~~~a~~~g~~g~ 425 (511)
+++|||||||||||||+|||++||+||+ |++++ |+++|+|+|++||++++++|
T Consensus 331 ~~~~~~~~~~~~~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~ILk--gk~v~~~~v~~~V~PgS~~V~~~l~~~G---- 404 (751)
T PRK11413 331 RVAHGKAKLSLLDKIENGRLKVQQGIIAGCSGGNYENVIAAANALR--GQSCGNDTFSLSVYPSSQPVFMDLAKKG---- 404 (751)
T ss_pred hhhhhhccccccccccCCCcEeeeEEEecCCCCCHHHHHHHHHHhc--CcccCCCceeEEEECCCHHHHHHHHHcC----
Confidence 7899999999999999999999999999 88886 99999999999999999975
Q ss_pred CCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCc-----EEecCHHHHHHHHHc
Q 010403 426 GGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQ-----IYLASPYTAAASALT 500 (511)
Q Consensus 426 ~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~-----iyLASP~tvAAsAl~ 500 (511)
++++|++|||+| .+||||+|+|++ ..+.+|++||||+||||+||||++.++ +||+||+++||+|+.
T Consensus 405 ----~~~~l~~AGa~i-~~~gCgpCiG~~----~~~~~ge~~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~ 475 (751)
T PRK11413 405 ----VVADLMGAGAII-RTAFCGPCFGAG----DTPANNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAAN 475 (751)
T ss_pred ----cHHHHHHcCCEE-CCCchhhhhCcC----CcCCCCCEEEeecCCCCCCCCCCccccceecccccCCHHHHHHHHHh
Confidence 799999999999 699999999984 247899999999999999999998887 788889999999999
Q ss_pred -CCCCCccccc
Q 010403 501 -GYVTDPREFL 510 (511)
Q Consensus 501 -G~Itdpr~~~ 510 (511)
|+|||||++.
T Consensus 476 gG~it~p~~~~ 486 (751)
T PRK11413 476 GGYLTSATELD 486 (751)
T ss_pred CCccCCHHHcc
Confidence 6999999873
No 19
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=2.8e-121 Score=1012.20 Aligned_cols=415 Identities=26% Similarity=0.365 Sum_probs=385.8
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCC
Q 010403 57 RRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYI 136 (511)
Q Consensus 57 r~~~~~~~~~~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~v 136 (511)
+.|.......|||||+||||++|+|++.|+|||+|++++|.+|+||.|+|++++.|+ ++|. ++|||+++++++||++
T Consensus 359 ~~~~~~~~~~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~-~lg~--~~~~~d~v~~~~dH~~ 435 (835)
T PRK09238 359 RKPKQPADSGKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDELK-DLAC--LGFSADLVMQSFCHTA 435 (835)
T ss_pred CCCCCCCcCCCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHHH-HcCC--cccCCCcEEEEccCCC
Confidence 445444455699999999999999998899999999999999999999999999996 4874 8999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceecc
Q 010403 137 FTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 216 (511)
Q Consensus 137 p~~~~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~G 216 (511)
|.++++.+++|+.+|+|++++|+. ||+ ||+|||||||+ ++++||++++|+||||||+|| ||||
T Consensus 436 p~~~~~~a~~~~~lr~Fa~~~Gi~-~~~-----------pG~GI~H~vl~--~~~~Pg~vivG~DSHT~t~ga---~a~G 498 (835)
T PRK09238 436 AYPKPVDVKTHHTLPDFIMNRGGV-SLR-----------PGDGVIHSWLN--RMLLPDTVGTGGDSHTRFPIG---ISFP 498 (835)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCc-EeC-----------CCCCeeeeccc--ccccCCeEEEecccccCCCCc---eEec
Confidence 999999999999999999999996 465 46899999985 699999999999999999997 8899
Q ss_pred CchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHH----HHH--------hhccCCCceEEEEecccccCC
Q 010403 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----IGE--------ISVAGATYKSMEFVGTTVERL 284 (511)
Q Consensus 217 vG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~l----i~~--------l~~~g~~~~~vEF~G~~v~~L 284 (511)
+|++|++++|+||++||+|||+|+|+|+|+|++||++|||||+| |++ ++.++++|+++||. |+++|
T Consensus 499 ~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~lEf~--Gv~~L 576 (835)
T PRK09238 499 AGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE--GLPDL 576 (835)
T ss_pred cchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEEEEc--CcccC
Confidence 99999999999999999999999999999999999999999999 774 67778899999996 59999
Q ss_pred ChhhhhhhhhcccccCceeeccc-CchhHHHHhhhc----------CCC-----------------CCccccCCCCCeec
Q 010403 285 SMEERMTLCNMVVEAGGKNGVVP-ADGTTFKYLEDK----------TSL-----------------PYEPVYSDEKASFL 336 (511)
Q Consensus 285 s~~~R~Tl~NMa~E~GA~~~i~~-~D~~t~~yl~~r----------~~~-----------------~~~~l~~D~dA~Y~ 336 (511)
|+++|||||||++|+||++++|| +|++|++||+.+ ++. .++.+.+|+||+|+
T Consensus 577 sve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ll~aD~dA~Y~ 656 (835)
T PRK09238 577 KVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPELLEADADAEYA 656 (835)
T ss_pred CHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhcccccCCCCCceE
Confidence 99999999999999999999999 889999999976 221 23457899999999
Q ss_pred EEEEEECCCc-eeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce--eeEEEecCcHHH
Q 010403 337 SEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKV 413 (511)
Q Consensus 337 ~~i~iDls~l-eP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--v~~~V~PaS~~V 413 (511)
++|+||||+| ||+||+|++|||+++++|+++++||+||||||| ||++||++||+||| |++++ ||++|+|+|++|
T Consensus 657 ~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~~Id~vfIGSCT-gr~~DlraAA~ILk--g~~v~~~vr~~V~P~S~~v 733 (835)
T PRK09238 657 AVIEIDLAEIKEPILACPNDPDDVRLLSEVAGTKIDEVFIGSCM-TNIGHFRAAGKLLE--GKKGQLPTRLWVAPPTKMD 733 (835)
T ss_pred EEEEEEhhhcCCCeecCCCChhhheEHHHhcCCccCeEEEEcCC-CCHHHHHHHHHHHc--CCccCCCCCEEEECCCHHH
Confidence 9999999999 999999999999999999999999999999999 99999999999999 77765 999999999999
Q ss_pred HHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHHH
Q 010403 414 WMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYT 493 (511)
Q Consensus 414 ~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~t 493 (511)
|.++.++| ++++|.+|||.+ ..||||+|+|+ ++++++|++||||+||||+||||+ ++++||+||++
T Consensus 734 ~~~l~~eG--------~~~~l~~AGa~v-~~pGCg~C~G~----~~~~~~ge~~vSTsNRNF~GRmG~-~a~vYLaSP~~ 799 (835)
T PRK09238 734 ADQLTEEG--------YYSIFGKAGARI-EMPGCSLCMGN----QARVADGATVFSTSTRNFPNRLGK-GANVYLGSAEL 799 (835)
T ss_pred HHHHHHcC--------cHHHHHHcCCEE-CCCcchhhhCc----cCcCCCCCEEEeecCCCCCCCCCC-CCCeEeCCHHH
Confidence 99999975 799999999999 69999999997 468999999999999999999996 89999999999
Q ss_pred HHHHHHcCCCCCccccc
Q 010403 494 AAASALTGYVTDPREFL 510 (511)
Q Consensus 494 vAAsAl~G~Itdpr~~~ 510 (511)
||||||+|+|+|||+|+
T Consensus 800 aAAsAi~G~I~~p~e~~ 816 (835)
T PRK09238 800 AAVCALLGRIPTVEEYQ 816 (835)
T ss_pred HHHHHhCCccCCHHHHH
Confidence 99999999999999985
No 20
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.3e-120 Score=939.08 Aligned_cols=351 Identities=32% Similarity=0.535 Sum_probs=336.1
Q ss_pred EEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCC
Q 010403 98 LMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDY 177 (511)
Q Consensus 98 v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg 177 (511)
+|+||.|+|++++ |. ++|. .+||||+|+++++||++|+.+.+.+++++++|+|||++||+ ||+. +
T Consensus 2 ~~~hd~t~p~~~~-~~-~~g~-~~v~~p~~~~~~~DH~vp~~~~~~~~~~~~lr~~ak~~gi~-~~~~-----------g 66 (363)
T cd01582 2 CMTHDNSWPVALK-FM-SIGA-TKIHNPDQIVMTLDHDVQNKSEKNLKKYKNIESFAKKHGID-FYPA-----------G 66 (363)
T ss_pred eeEEeCcHHHHHH-HH-HcCC-CccCCCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCCe-EECC-----------C
Confidence 6899999999999 64 4774 79999999999999999999999999999999999999995 6754 5
Q ss_pred CceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHH
Q 010403 178 KGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLI 257 (511)
Q Consensus 178 ~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDvi 257 (511)
+|||||+++|+|+++||++++|+||||||+||||+||||||+||++.+|+||++|++|||+|+|+|+|+|++||++||||
T Consensus 67 ~GI~Hqv~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDvi 146 (363)
T cd01582 67 RGIGHQIMIEEGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVI 146 (363)
T ss_pred CCEEEEeccccCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccCchhHHHHhhhcCCCCCccccCCCCCeecE
Q 010403 258 LQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLS 337 (511)
Q Consensus 258 L~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~~~~~l~~D~dA~Y~~ 337 (511)
|+|+++|+.+|++|+++||+|+++++||+++|||||||++|+||+++|||+| ++
T Consensus 147 L~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D--------------------------~~ 200 (363)
T cd01582 147 VALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD--------------------------AK 200 (363)
T ss_pred HHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC--------------------------ce
Confidence 9999999999999999999999999999999999999999999999999999 67
Q ss_pred EEEEECCCceeeeecCCCcccccccccc--cceeeeeEEEecCCCCChHHHHHHHHHHHhcCCc-------ce--eeEEE
Q 010403 338 EYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKK-------VK--VPTFL 406 (511)
Q Consensus 338 ~i~iDls~leP~VA~P~~Pdnv~~v~e~--~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~k-------v~--v~~~V 406 (511)
+++||||+|||+||+|++|||+.+++++ ++++|||||||||||||+|||++||+||| |+| |+ ||++|
T Consensus 201 ~~~iDls~leP~va~P~~p~~~~~~~~~~~~~~~id~~~IGSCTngr~~Dl~~aA~il~--gk~~~~~~~~v~~~Vr~~v 278 (363)
T cd01582 201 HLILDLSTLSPYVSGPNSVKVSTPLKELEAQNIKINKAYLVSCTNSRASDIAAAADVVK--GKKEKNGKIPVAPGVEFYV 278 (363)
T ss_pred EEEEEcccceeeeeCCCCCCCcCCHHHhhhcCceEeEEEEEcCCCCChHHHHHHHHHHh--CccccccCcccCCCceEEE
Confidence 9999999999999999999999999999 58999999999999999999999999999 666 76 99999
Q ss_pred ecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcE
Q 010403 407 VPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQI 486 (511)
Q Consensus 407 ~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~i 486 (511)
+|+|++||++++++| ++++|++|||+| .+||||+|+|++ ++.+++||+||||+||||+||||++++++
T Consensus 279 ~PgS~~V~~~a~~~G--------l~~~l~~aGa~i-~~pgCg~C~G~~---~~~~~~ge~~vsT~NRNF~GR~G~~~~~~ 346 (363)
T cd01582 279 AAASSEVQAAAEKNG--------DWQTLLEAGATP-LPAGCGPCIGLG---QGLLEPGEVGISATNRNFKGRMGSTEALA 346 (363)
T ss_pred eCCCHHHHHHHHHcC--------cHHHHHHCCCEE-ECCCCeeccCCC---CCCCCCCCEEEEecCCCCCcCCCCCCCcE
Confidence 999999999999975 799999999999 699999999995 45788999999999999999999999999
Q ss_pred EecCHHHHHHHHHcCCC
Q 010403 487 YLASPYTAAASALTGYV 503 (511)
Q Consensus 487 yLASP~tvAAsAl~G~I 503 (511)
|||||+|||||||+|+|
T Consensus 347 yLaSP~~vaAsAi~G~i 363 (363)
T cd01582 347 YLASPAVVAASAISGKI 363 (363)
T ss_pred EECCHHHHHHHHhCccC
Confidence 99999999999999987
No 21
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=1.6e-120 Score=1003.72 Aligned_cols=412 Identities=26% Similarity=0.376 Sum_probs=382.2
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCC
Q 010403 57 RRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYI 136 (511)
Q Consensus 57 r~~~~~~~~~~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~v 136 (511)
++|+.+| |||||+||||++|+|++.|+|||+|++++|.+++||+|+|++++.|++ ++. ++|||+++++++||++
T Consensus 363 ~~~~~~~---mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~~-l~~--~vfdpd~v~~~~DH~~ 436 (844)
T TIGR00117 363 KAPAESD---KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELKE-LAC--LGFSADLVLQSFCHTA 436 (844)
T ss_pred CCCCcCC---CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHH-hCC--ceECCCcEEEEeCCCC
Confidence 4455555 999999999999999988999999999999999999999999999964 763 8999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceecc
Q 010403 137 FTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 216 (511)
Q Consensus 137 p~~~~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~G 216 (511)
|.+++..+++|+.+|+|++++|+. ||+. |+|||||+|+| +++||++++|+||||||+ +| ||||
T Consensus 437 p~~~~~~a~~~~~lr~Fa~~~Gi~-~~~p-----------G~GI~Hqvl~e--~~~PG~vivG~DSHT~t~--~G-~a~G 499 (844)
T TIGR00117 437 AYPKPVDVNTHHTLPDFIMNRGGV-ALRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFP--LG-ISFP 499 (844)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCe-EECC-----------CCceecccchh--hccCCeeEEecccccccc--ce-EEec
Confidence 999999999999999999999996 6664 58999999977 689999999999999998 57 9999
Q ss_pred CchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHH----H--HHhhc------cCCCceEEEEecccccCC
Q 010403 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----I--GEISV------AGATYKSMEFVGTTVERL 284 (511)
Q Consensus 217 vG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~l----i--~~l~~------~g~~~~~vEF~G~~v~~L 284 (511)
+|++|++++|+||++||+|||+|+|+|+|+|++||++|||||+| | +.|++ +|++|+++||. |+++|
T Consensus 500 ~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~lEf~--Gi~~L 577 (844)
T TIGR00117 500 AGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIE--GLPDL 577 (844)
T ss_pred ccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEEEEC--CcccC
Confidence 99999999999999999999999999999999999999999999 5 45544 67899999996 49999
Q ss_pred ChhhhhhhhhcccccCceeecccCch-hHHHHhhhc----------CCC-----------------CCccccCCCCCeec
Q 010403 285 SMEERMTLCNMVVEAGGKNGVVPADG-TTFKYLEDK----------TSL-----------------PYEPVYSDEKASFL 336 (511)
Q Consensus 285 s~~~R~Tl~NMa~E~GA~~~i~~~D~-~t~~yl~~r----------~~~-----------------~~~~l~~D~dA~Y~ 336 (511)
|+++|||||||++|+||++|+|++|+ +|++||+.+ ++. .++.|.+|+||.|+
T Consensus 578 sve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~ll~aD~dA~Y~ 657 (844)
T TIGR00117 578 KVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYA 657 (844)
T ss_pred CHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhcccccCCCCCceE
Confidence 99999999999999999999999996 589999985 321 23457899999999
Q ss_pred EEEEEECCCc-eeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce-eeEEEecCcHHHH
Q 010403 337 SEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK-VPTFLVPATQKVW 414 (511)
Q Consensus 337 ~~i~iDls~l-eP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~-v~~~V~PaS~~V~ 414 (511)
++|+||||+| ||+||+|++|||+++++|+++++||+||||||| ++++||++||+||| |+++. ||++|+|+|++||
T Consensus 658 ~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~~IdqVfIGSCT-~n~~DlraAA~ILk--g~~v~~vrl~V~P~S~~V~ 734 (844)
T TIGR00117 658 AVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGDKIDEVFIGSCM-TNIGHFRAAGKILD--AAGQLPTRLWVAPPTRMDE 734 (844)
T ss_pred EEEEEEhHhCCCCeeCCCCChhhccChHhhcCcccceEEEEcCC-CCHHHHHHHHHHHc--CCCcCCCCEEEECCCHHHH
Confidence 9999999999 999999999999999999999999999999999 79999999999999 77776 9999999999999
Q ss_pred HHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHHHH
Q 010403 415 MDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTA 494 (511)
Q Consensus 415 ~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~tv 494 (511)
.++.++| ++++|.+|||.+ ..||||+|+|+ ++++++|++|+||+||||+||||+ ++++|||||++|
T Consensus 735 ~~l~~eG--------~~~~f~~AGa~i-~~pGCg~C~Gn----~~~v~~Ge~vvSTsNRNF~GRmG~-~a~vYLaSP~~a 800 (844)
T TIGR00117 735 QQLTEEG--------YYSIFGAAGART-EIPGCSLCMGN----QARVADGATVFSTSTRNFPNRMGT-GANVYLGSAELA 800 (844)
T ss_pred HHHHHcC--------cHHHHHHcCCEE-CCCccccccCC----CCcCCCCCEEEeccCCCCCCCCCC-CccEEeCCHHHH
Confidence 9999975 799999999999 69999999997 568899999999999999999997 899999999999
Q ss_pred HHHHHcCCCCCccccc
Q 010403 495 AASALTGYVTDPREFL 510 (511)
Q Consensus 495 AAsAl~G~Itdpr~~~ 510 (511)
|||||+|+|+|||+|+
T Consensus 801 AAsAi~G~I~dp~e~~ 816 (844)
T TIGR00117 801 AVCALLGKIPTPEEYQ 816 (844)
T ss_pred HHHHhCcccCCHHHHH
Confidence 9999999999999986
No 22
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=2.2e-118 Score=985.13 Aligned_cols=415 Identities=25% Similarity=0.350 Sum_probs=377.9
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCC-CCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCC
Q 010403 57 RRPATTGSVKNAMTLTEKIFSRASEK-PQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHY 135 (511)
Q Consensus 57 r~~~~~~~~~~~~Tl~EKIl~~~~~~-~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~ 135 (511)
+.|.......|||||+||||++|+|+ +.|+|||+|++++|.+++||.|+|++++.|+ ++|. .+|||+++++++||+
T Consensus 432 ~~p~~~~~~~mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efk-el~~--~~~dpdkv~~~fDH~ 508 (938)
T PLN00094 432 RMPSVPESKPKGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELK-DLAC--LGFSADLVMQSFCHT 508 (938)
T ss_pred cCCCCCCcCCCchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHH-Hhcc--cccCcccEEEEccCC
Confidence 44444444459999999999999998 4699999999999999999999999999996 4763 488999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceec
Q 010403 136 IFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFAT 215 (511)
Q Consensus 136 vp~~~~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~ 215 (511)
+|.+++...++|+.+|+|++++|+. ||+. |+|||||+|+| +++||++++|+|||||+.+++ +|
T Consensus 509 ap~p~~~~~~~~~~lr~Fa~~~Gi~-~~~~-----------G~GI~HqvL~e--~~lPG~vivGgDSHT~fa~GI---sf 571 (938)
T PLN00094 509 AAYPKPVDVVTHHTLPDFIRNRGGV-SLRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIGI---SF 571 (938)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCE-EECC-----------CCceecccccc--cccCCeEEEeecCCCCCcccc---cC
Confidence 9999999999999999999999996 7764 57999999876 999999999999999977764 56
Q ss_pred cCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHH------HHhhc------cCCCceEEEEecccccC
Q 010403 216 GIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQII------GEISV------AGATYKSMEFVGTTVER 283 (511)
Q Consensus 216 GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li------~~l~~------~g~~~~~vEF~G~~v~~ 283 (511)
|.|++|++++|+||++||+|||+|+|+|+|+|++||++|||||+|+ ++|++ ++.+||++|| +|+++
T Consensus 572 ~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~GkilEf--~Gl~~ 649 (938)
T PLN00094 572 PAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRILEI--EGLPH 649 (938)
T ss_pred CCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEEEEe--CCccc
Confidence 8899999999999999999999999999999999999999999996 55554 3457889999 66999
Q ss_pred CChhhhhhhhhcccccCceeecccCc-hhHHHHhhh----------cCC-----------------CCCccccCCCCCee
Q 010403 284 LSMEERMTLCNMVVEAGGKNGVVPAD-GTTFKYLED----------KTS-----------------LPYEPVYSDEKASF 335 (511)
Q Consensus 284 Ls~~~R~Tl~NMa~E~GA~~~i~~~D-~~t~~yl~~----------r~~-----------------~~~~~l~~D~dA~Y 335 (511)
||+++|||||||++|+||++|+|++| ++|++||+. +++ +.++.+.+|+||+|
T Consensus 650 Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ll~aD~dA~Y 729 (938)
T PLN00094 650 LKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPELLEADPDAEY 729 (938)
T ss_pred CCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcccccCCCCCce
Confidence 99999999999999999999999999 578999986 221 12345789999999
Q ss_pred cEEEEEECCCc-eeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce--eeEEEecCcHH
Q 010403 336 LSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQK 412 (511)
Q Consensus 336 ~~~i~iDls~l-eP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--v~~~V~PaS~~ 412 (511)
+++|+||||+| ||+||+|++|||+++++|++|++||+||||||| +|++||++||+||+ |++++ ||++|+|+|++
T Consensus 730 ~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g~kIDqVFIGSCT-grieDlraAA~ILk--Grkv~~~Vrl~V~P~Sr~ 806 (938)
T PLN00094 730 AAVIEIDMDEIKEPILCAPNDPDDARLLSEVTGDKIDEVFIGSCM-TNIGHFRAAGKLLN--DNLSQLPTRLWVAPPTKM 806 (938)
T ss_pred EEEEEEEhHHCCCCeEeCCCChhhceECchhcCCccCeEEEEeCC-CCHHHHHHHHHHHc--CCCCCCCCcEEEeCCCHH
Confidence 99999999999 999999999999999999999999999999999 79999999999999 76665 99999999999
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHH
Q 010403 413 VWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPY 492 (511)
Q Consensus 413 V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~ 492 (511)
||.++.++| ++++|.+|||++ ..||||+|+|+ +|++++|++||||+||||+||||+ ++++||+||+
T Consensus 807 V~~ql~~eG--------~~~if~~AGA~i-~~PGCg~CmG~----~g~l~~Gev~vSTSNRNF~GRmG~-~a~VYLaSP~ 872 (938)
T PLN00094 807 DEAQLKAEG--------YYSTFGTVGART-EMPGCSLCMGN----QARVAEKSTVVSTSTRNFPNRLGK-GANVYLASAE 872 (938)
T ss_pred HHHHHHHcC--------cHHHHHhCCCEE-cCCccccccCC----CCcCCCCCeEEeecCCCCCCCCCC-CccEEecCHH
Confidence 999999975 799999999999 69999999997 468899999999999999999996 8999999999
Q ss_pred HHHHHHHcCCCCCccccc
Q 010403 493 TAAASALTGYVTDPREFL 510 (511)
Q Consensus 493 tvAAsAl~G~Itdpr~~~ 510 (511)
+||||||+|+|+|||+|+
T Consensus 873 ~AAASAi~G~Itdpre~l 890 (938)
T PLN00094 873 LAAVAAILGRLPTVEEYL 890 (938)
T ss_pred HHHHHHhCCccCCHHHHH
Confidence 999999999999999985
No 23
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=1.5e-114 Score=907.33 Aligned_cols=378 Identities=35% Similarity=0.588 Sum_probs=362.0
Q ss_pred EEEecCCChhHHHHHHHHHhCCCC-cccCCCcEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCC
Q 010403 97 ILMTHDVCGPGSFGIFKKEFGENA-KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 175 (511)
Q Consensus 97 ~v~~hD~tgp~~~~~~~~e~g~~~-~V~~p~kv~~~~DH~vp~~~~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~P 175 (511)
++|+||.|+|++++.|++ +|. . +||||+|+++++||++|+++.+.+++++.+|+|++++||+ ||+.
T Consensus 1 ~v~~hD~tgp~a~~~~~~-~~~-~~~v~~p~~v~~~~DH~~p~~~~~~~~~~~~lr~f~~~~gi~-~~~~---------- 67 (389)
T cd01351 1 RVMLQDATGPMAMKAFEI-LAA-LGKVADPSQIACVHDHAVQLEKPVNNEGHKFLSFFAALQGIA-FYRP---------- 67 (389)
T ss_pred CEEEEecchHHHHHHHHH-cCC-CCCCCCcccEEEEECCCCCCCChhHHHHHHHHHHHHHHcCCc-EECC----------
Confidence 378999999999999964 774 5 8999999999999999999999999999999999999995 6664
Q ss_pred CCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHH
Q 010403 176 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 255 (511)
Q Consensus 176 pg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKD 255 (511)
++|||||+++|+ +++||++++|+||||||+||||+||||+|+||++++|+||++|+++||+++|+|+|+|++||++||
T Consensus 68 -g~Gi~H~~~~E~-~~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kD 145 (389)
T cd01351 68 -GVGIIHQIMVEN-LALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKD 145 (389)
T ss_pred -CCCeECcccccc-cCCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeH
Confidence 589999999887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccCchhHHHHhhhcCCC--------CCccc
Q 010403 256 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPV 327 (511)
Q Consensus 256 viL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~--------~~~~l 327 (511)
++|+|++.|+.+|++|+++||.|+++++||+|+|||||||++|+||++|+||+|++|++||+.+++. +|+.|
T Consensus 146 l~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~~~~~~~~~l 225 (389)
T cd01351 146 VVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKNLWLAFPEEL 225 (389)
T ss_pred HHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHHHhcCCchhhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998876 57788
Q ss_pred cCCCCCeecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcce--eeEE
Q 010403 328 YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTF 405 (511)
Q Consensus 328 ~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~--v~~~ 405 (511)
.+|+||.|+++|+||||+|||+|++|++|||+++++|+++.+||+||||||||+|+|||++||+||| |+|++ ||++
T Consensus 226 ~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~~~Id~v~IGSCtn~~~~dl~~aA~ilk--gk~v~~~v~~~ 303 (389)
T cd01351 226 LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEGTKIDQVLIGSCTNNRYSDMLAAAKLLK--GAKVAPGVRLI 303 (389)
T ss_pred CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccCCceeEEEEecCCCCCHHHHHHHHHHHc--CCcCCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 88887 9999
Q ss_pred EecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCc
Q 010403 406 LVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQ 485 (511)
Q Consensus 406 V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~ 485 (511)
|+|+|++||+++.++| ++++|++||+.+ .+|||++|+|++ +|++++|++||||+||||+||||+..++
T Consensus 304 v~P~S~~v~~~a~~~G--------l~~~l~~aG~~i-~~~gC~~C~G~~---~~~~~~g~~~vst~nRNF~GR~g~~~~~ 371 (389)
T cd01351 304 VTPGSRMVYATLSREG--------YYEILVDSGARI-LPPGCGPCMGNG---ARLVADGEVGVSSGNRNFPGRLGTYERH 371 (389)
T ss_pred EECCCHHHHHHHHHcC--------hHHHHHHCCCEE-eCCCCcccCCCC---CCcCCCCcEEEEeecCCCccccCCCCCc
Confidence 9999999999999864 899999999999 699999999995 5688999999999999999999998899
Q ss_pred EEecCHHHHHHHHHcCCC
Q 010403 486 IYLASPYTAAASALTGYV 503 (511)
Q Consensus 486 iyLASP~tvAAsAl~G~I 503 (511)
+|||||+|||||||+|+|
T Consensus 372 ~yLaSP~~vaAsAl~G~i 389 (389)
T cd01351 372 VYLASPELAAATAIAGKI 389 (389)
T ss_pred eEECCHHHHHHHHhcCcC
Confidence 999999999999999987
No 24
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=1.7e-112 Score=948.17 Aligned_cols=417 Identities=25% Similarity=0.361 Sum_probs=366.8
Q ss_pred CCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHH------HhCCCCcccCCC-cEEEEecCCCCCCc-----HHHHHHHH
Q 010403 81 EKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKK------EFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVD 148 (511)
Q Consensus 81 ~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~------e~g~~~~V~~p~-kv~~~~DH~vp~~~-----~~~a~~~~ 148 (511)
+.+.-++|..|.++||++++||+||.+++-.|+. ++|.+++..+|. ++.+++||++++.. ....+..+
T Consensus 70 w~~~~~~~~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~ 149 (888)
T PRK09277 70 WLPKAKPDREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVEL 149 (888)
T ss_pred chhcCCCCceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHH
Confidence 3333457889999999999999999555444422 357667788998 59999999997753 22333345
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecc----------ee--eeeCCceEEcCCCCCcCCCcccceecc
Q 010403 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ----------EG--HCRPGEVLLGTDSHTCTAGAFGQFATG 216 (511)
Q Consensus 149 ~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~e----------eg--~~~PG~~vvGtDSHT~t~GAlGa~a~G 216 (511)
.+++.+++|++-. |....+.||++.|||+|||||+.+| .| ++.| +++|||||||||+||||+||||
T Consensus 150 e~~rN~er~~fLk-w~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~P-dtlVGtDSHT~t~GalG~la~G 227 (888)
T PRK09277 150 EFERNEERYQFLK-WGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYP-DTLVGTDSHTTMINGLGVLGWG 227 (888)
T ss_pred HHHhCHHHHhHHH-HHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeecc-ceEEecCCCCCCCCcccccEEc
Confidence 5555555554321 8888889999999999999999999 77 8999 5999999999999999999999
Q ss_pred CchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcc
Q 010403 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMV 296 (511)
Q Consensus 217 vG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa 296 (511)
||++|++++|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|||+++||+++|||||||+
T Consensus 228 VGg~Eaeaam~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa 307 (888)
T PRK09277 228 VGGIEAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMA 307 (888)
T ss_pred cCHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceeecccCchhHHHHhhhcCCCC--------Cc----ccc-CCCCCeecEEEEEECCCceeeeecCCCcccccccc
Q 010403 297 VEAGGKNGVVPADGTTFKYLEDKTSLP--------YE----PVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR 363 (511)
Q Consensus 297 ~E~GA~~~i~~~D~~t~~yl~~r~~~~--------~~----~l~-~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~ 363 (511)
+|+||++|+||+|++|++||+.+++.+ |. .+. +|++|.|+++++||||+|||+||+|++|||+.+++
T Consensus 308 ~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~ 387 (888)
T PRK09277 308 PEYGATCGFFPIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLS 387 (888)
T ss_pred hhhCceEEEecCChhHHHHHHhcCCChHHHHHHHHHHHHHhhhccCCCCCCEEEEEEEEccceeEecCCCCCcccCcChh
Confidence 999999999999999999999987754 31 233 59999999999999999999999999999999999
Q ss_pred cccce----------------------------eeeeEEEecCCCCChHHHHHHHHHHHh----cCCcce--eeEEEecC
Q 010403 364 ECKDV----------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTFLVPA 409 (511)
Q Consensus 364 e~~~~----------------------------~Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~--v~~~V~Pa 409 (511)
|+.+. +|++||||||||+|+||+++||+||++ +|+||+ |+++|+|+
T Consensus 388 e~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PG 467 (888)
T PRK09277 388 DVKEAFAKSAELGVQGFGLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPG 467 (888)
T ss_pred hcCcchhhhchhhhhhhhhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCC
Confidence 98875 678999999999999999999999963 599998 99999999
Q ss_pred cHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----CCCCCc---EEEEecCCCCCCCCCCC
Q 010403 410 TQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNEPM---VCVSTTNRNFPGRMGHK 482 (511)
Q Consensus 410 S~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g----~l~~ge---v~vsT~NRNF~GRmG~~ 482 (511)
|++|+.++.++| ++++|++|||.| .+||||+|+|++++... .+.+++ +||||+||||+||||+.
T Consensus 468 S~~V~~~l~~~G--------l~~~l~~aGf~i-~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~ 538 (888)
T PRK09277 468 SKVVTDYLEKAG--------LLPYLEALGFNL-VGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPL 538 (888)
T ss_pred CHHHHHHHHHCC--------hHHHHHHcCCEE-eCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCC
Confidence 999999999975 799999999999 69999999999754322 234566 57999999999999998
Q ss_pred CCcEEecCHHHHHHHHHcCCCC-----Cccc
Q 010403 483 EGQIYLASPYTAAASALTGYVT-----DPRE 508 (511)
Q Consensus 483 ~a~iyLASP~tvAAsAl~G~It-----dpr~ 508 (511)
.+.+|||||++||||||+|+|+ ||..
T Consensus 539 ~~~~yLaSP~lvaA~AlaG~I~~d~~~dplg 569 (888)
T PRK09277 539 VKANYLASPPLVVAYALAGTVDIDLEKDPLG 569 (888)
T ss_pred CCceEEcCHHHHHHHHHcCccccCCCCCCcc
Confidence 8999999999999999999998 7764
No 25
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=4.5e-112 Score=946.33 Aligned_cols=412 Identities=24% Similarity=0.335 Sum_probs=362.1
Q ss_pred CCCCeEEEeeeEEEecCCChhHHHHHHH------HHhCCCCcccCCC-cEEEEecCCCCCCc-----HHHHHHHHHHHHH
Q 010403 86 SPGDNVWVNVDILMTHDVCGPGSFGIFK------KEFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVDILRDF 153 (511)
Q Consensus 86 ~~Gd~v~v~vD~v~~hD~tgp~~~~~~~------~e~g~~~~V~~p~-kv~~~~DH~vp~~~-----~~~a~~~~~~r~f 153 (511)
+.+..|.+++|++++||+|+++++..|. +++|.+.+..+|. ++.+++||++++.. ....+..+++++.
T Consensus 74 ~~~~ei~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN 153 (889)
T PRK12881 74 KSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRN 153 (889)
T ss_pred CCCceeccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999988776662 2357654555665 57799999997752 2233334555555
Q ss_pred HHHcCcceeecccccCCcccCCCCCceeeeEecce-------------eeeeCCceEEcCCCCCcCCCcccceeccCchh
Q 010403 154 CMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE-------------GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNT 220 (511)
Q Consensus 154 ar~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~ee-------------g~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~t 220 (511)
+++|++-+ |....+.||+++|||+|||||+.+|. |+++| +++|||||||||+||||+||||||++
T Consensus 154 ~ery~fLk-w~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~P-dtlVGtDSHT~~~galG~lg~GVGg~ 231 (889)
T PRK12881 154 AERYQFLK-WGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYP-DTLVGTDSHTTMINGIGVLGWGVGGI 231 (889)
T ss_pred HHHhChHH-HHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecC-CeEEecCCCCCCCccccceEecccHH
Confidence 55555322 88888999999999999999999995 89999 59999999999999999999999999
Q ss_pred HHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccC
Q 010403 221 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAG 300 (511)
Q Consensus 221 d~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~G 300 (511)
|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|
T Consensus 232 Eaeaamlgq~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~G 311 (889)
T PRK12881 232 EAEAVMLGQPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYG 311 (889)
T ss_pred HHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecccCchhHHHHhhhcCCCCC--------c---c-c-cCCCCCeecEEEEEECCCceeeeecCCCccccccccccc-
Q 010403 301 GKNGVVPADGTTFKYLEDKTSLPY--------E---P-V-YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK- 366 (511)
Q Consensus 301 A~~~i~~~D~~t~~yl~~r~~~~~--------~---~-l-~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~- 366 (511)
|++||||+|++|++||+.+++.+. . . + .+|++|.|+++++||||+|||+||+|++|||+.++++++
T Consensus 312 At~g~fp~De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~ 391 (889)
T PRK12881 312 ATMGFFPVDEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKS 391 (889)
T ss_pred ceEEEecCChhHHHHHHhcccchHHHHHHHHHHHHHHhhcCcCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCc
Confidence 999999999999999999876542 1 1 1 278999999999999999999999999999999999887
Q ss_pred -------------------------ce---eeeeEEEecCCCCChHHHHHHHHHHHh----cCCcce--eeEEEecCcHH
Q 010403 367 -------------------------DV---KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTFLVPATQK 412 (511)
Q Consensus 367 -------------------------~~---~Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~--v~~~V~PaS~~ 412 (511)
++ +||+||||||||+|+|||++||+||++ +|+||+ |+++|+|+|+.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~ 471 (889)
T PRK12881 392 AFSDLFSKPVAENGFAKKAQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKV 471 (889)
T ss_pred CHHHHhhhHHHhhhhhcccccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCHH
Confidence 22 799999999999999999999999953 499998 99999999999
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----CCCCCc---EEEEecCCCCCCCCCCCCCc
Q 010403 413 VWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNEPM---VCVSTTNRNFPGRMGHKEGQ 485 (511)
Q Consensus 413 V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g----~l~~ge---v~vsT~NRNF~GRmG~~~a~ 485 (511)
|+.++.++| ++++|+++||.+ .+||||+|+|++++... .+.+|+ +||||+||||+||||+..+.
T Consensus 472 V~~~l~~~G--------l~~~l~~aGf~i-~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~ 542 (889)
T PRK12881 472 VTEYLERAG--------LLPYLEKLGFGI-VGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKA 542 (889)
T ss_pred HHHHHHHcC--------cHHHHHHcCCEE-eCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCc
Confidence 999999975 799999999999 69999999999754321 234564 78999999999999999899
Q ss_pred EEecCHHHHHHHHHcCCCC-----Cccc
Q 010403 486 IYLASPYTAAASALTGYVT-----DPRE 508 (511)
Q Consensus 486 iyLASP~tvAAsAl~G~It-----dpr~ 508 (511)
+|||||++||||||+|+|+ ||..
T Consensus 543 ~yLaSP~lvaA~AlaG~i~~d~~~dplg 570 (889)
T PRK12881 543 NFLASPPLVVAYALAGTVRRDLMTEPLG 570 (889)
T ss_pred eEECCHHHHHHHHhcCceecCCCCCCcc
Confidence 9999999999999999999 7763
No 26
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=4.4e-112 Score=881.97 Aligned_cols=366 Identities=27% Similarity=0.379 Sum_probs=335.1
Q ss_pred EEEecCCCh-hHHHHHH-----HHHhCCCCcccCCC-cEEEEecCCCCCC-----cHHHHHHHHHHHHHHHHcCcceeec
Q 010403 97 ILMTHDVCG-PGSFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTS-----DERANRNVDILRDFCMEQNIKYFYD 164 (511)
Q Consensus 97 ~v~~hD~tg-p~~~~~~-----~~e~g~~~~V~~p~-kv~~~~DH~vp~~-----~~~~a~~~~~~r~far~~gi~~f~d 164 (511)
++++||+|+ |.++|+. ..++|.+++..+|. ++.+++||++++. +....++.+.+++.+++|++.+ |.
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~-~~ 79 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLK-WG 79 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHH-HH
Confidence 467899999 7766653 23478778888996 8999999999876 4455577788899999998864 77
Q ss_pred ccccCCcccCCCCCceeeeEecc-------------eeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcceE
Q 010403 165 IKDLGNFKANPDYKGVCHIALAQ-------------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKV 231 (511)
Q Consensus 165 ~~~~~n~~~~Ppg~GI~Hq~l~e-------------eg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~~ 231 (511)
...++|+++.||++|||||++.| +|+++| ++++|+||||||+||||+||||||++|++.+|+||++
T Consensus 80 ~~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P-~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~ 158 (404)
T cd01586 80 QKAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYP-DSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPI 158 (404)
T ss_pred HHHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEee-eeEeecCCCCccCCcccceEecccHHHHHHHHhCCcc
Confidence 77889999999999999999855 799999 5999999999999999999999999999999999999
Q ss_pred EeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccCchh
Q 010403 232 LLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGT 311 (511)
Q Consensus 232 ~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D~~ 311 (511)
||++||+|+|+|+|+|++||++|||||+||++|+.+|++|+++||+||++++||+++|||||||++|+||+++|||+|
T Consensus 159 ~~~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D-- 236 (404)
T cd01586 159 SMLLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD-- 236 (404)
T ss_pred ccCCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHH
Q 010403 312 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAK 391 (511)
Q Consensus 312 t~~yl~~r~~~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~ 391 (511)
+++|+||||+|||+||+|++|||+.++ +.+||+||||||||||+|||++||+
T Consensus 237 ------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v----~~~Id~v~IGSCTNgr~eDl~~aA~ 288 (404)
T cd01586 237 ------------------------TQVVELDLSTVEPSVSGPKRPQDRVPL----HGSVVIAAITSCTNTSNPSVMLAAG 288 (404)
T ss_pred ------------------------ceEEEEEcccceeeecCCCCcccccCc----CCcEeEEEEEcCCCCCCHHHHHHHH
Confidence 689999999999999999999999999 4599999999999999999999999
Q ss_pred HHHh----cCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----CC
Q 010403 392 VFLA----SGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RM 461 (511)
Q Consensus 392 iL~~----~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g----~l 461 (511)
||.+ +|+|++ |+++|+|+|++|+++++++| ++++|++|||+| .+||||+|+|++++... .+
T Consensus 289 iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~G--------l~~~l~~aGa~v-~~pgCg~CiG~~g~~~~~~~~~~ 359 (404)
T cd01586 289 LLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASG--------LLPYLEKLGFHV-VGYGCTTCIGNSGPLPEEVEEAI 359 (404)
T ss_pred HHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCC--------hHHHHHHcCCEE-cCCcchhccCCCCCCCchhhhhc
Confidence 9932 499998 99999999999999999975 799999999999 69999999998654211 16
Q ss_pred CCCcEE---EEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCC
Q 010403 462 NEPMVC---VSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 503 (511)
Q Consensus 462 ~~gev~---vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~I 503 (511)
.+||+| |||+||||+||||+..+++|||||+|||||||+|+|
T Consensus 360 ~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAAsAi~G~i 404 (404)
T cd01586 360 KENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred cCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHHHHhcccC
Confidence 789995 799999999999998899999999999999999987
No 27
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=1.4e-111 Score=939.97 Aligned_cols=418 Identities=26% Similarity=0.356 Sum_probs=364.5
Q ss_pred CCCCCCCCCeEEEeeeEEEecCCCh-hHHHHH--HH---HHhCCCCcccCCC-cEEEEecCCCCCC-----cHHHHHHHH
Q 010403 81 EKPQLSPGDNVWVNVDILMTHDVCG-PGSFGI--FK---KEFGENAKVWDRE-KIVIIPDHYIFTS-----DERANRNVD 148 (511)
Q Consensus 81 ~~~~v~~Gd~v~v~vD~v~~hD~tg-p~~~~~--~~---~e~g~~~~V~~p~-kv~~~~DH~vp~~-----~~~~a~~~~ 148 (511)
+++....+..|.++||++++||+|| |.++++ ++ .++|.++...+|. ++.+++||++++. +....+..+
T Consensus 52 w~~~~~~~~ei~f~p~RvllQD~TGvpa~vdlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~ 131 (876)
T TIGR01341 52 WKIGEVADTEIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMEL 131 (876)
T ss_pred CcccCCCCceeccCchhheeccccCchHHHHHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHH
Confidence 3433445678999999999999999 555554 21 2357777778886 7999999999775 222333344
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecce-------------eeeeCCceEEcCCCCCcCCCcccceec
Q 010403 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE-------------GHCRPGEVLLGTDSHTCTAGAFGQFAT 215 (511)
Q Consensus 149 ~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~ee-------------g~~~PG~~vvGtDSHT~t~GAlGa~a~ 215 (511)
++++.+++|++-. |....++||+++|||+|||||+..|. |++.| +++|||||||||+||||+|||
T Consensus 132 e~~rN~ery~fLk-w~~~~f~~~~v~ppg~GI~HqV~lE~la~~v~~~~~~g~g~a~P-dtlVGtDSHT~t~GalG~la~ 209 (876)
T TIGR01341 132 EFERNLERYQFLK-WAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAEVDGELTAYP-DSLVGTDSHTTMINGLGVLGW 209 (876)
T ss_pred HHHhCHHHHhHHH-HHHHHcccCCCCCCCCCeeceechhhcccceeecccCCcceecc-ceeeecCCCCCCCCeecceEe
Confidence 4455555554311 88888999999999999999998885 69999 489999999999999999999
Q ss_pred cCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhc
Q 010403 216 GIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNM 295 (511)
Q Consensus 216 GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NM 295 (511)
|||++|++++|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|||+++||+++|||||||
T Consensus 210 GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNM 289 (876)
T TIGR01341 210 GVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANM 289 (876)
T ss_pred cccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceeecccCchhHHHHhhhcCCCC--------C----ccccCC-CCCeecEEEEEECCCceeeeecCCCccccccc
Q 010403 296 VVEAGGKNGVVPADGTTFKYLEDKTSLP--------Y----EPVYSD-EKASFLSEYRFDISKLEPLVAKPHSPDNRALA 362 (511)
Q Consensus 296 a~E~GA~~~i~~~D~~t~~yl~~r~~~~--------~----~~l~~D-~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v 362 (511)
++|+||++||||+|++|++||+.+++.+ | ..+++| ++|.|+++++||||+|||+||+|++|||+.++
T Consensus 290 a~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~l~~~y~k~~~l~~~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l 369 (876)
T TIGR01341 290 APEYGATCGFFPIDDVTLQYLRLTGRDGDHVELVEKYARAQGLFYDDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPL 369 (876)
T ss_pred chhhCceEEEEcCChhHHHHHHhCCCCHHHHHHHHHHHHhcccccCCCCCCceeEEEEEEcccceeeccCCCChhhccCh
Confidence 9999999999999999999999988754 2 134677 89999999999999999999999999999999
Q ss_pred ccccce-----------------------------------eeeeEEEecCCCCChHHHHHHHHHHHh----cCCcce--
Q 010403 363 RECKDV-----------------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK-- 401 (511)
Q Consensus 363 ~e~~~~-----------------------------------~Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~-- 401 (511)
+++.+. +||+||||||||+|+||+++||+||++ +|+||+
T Consensus 370 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~ 449 (876)
T TIGR01341 370 REVKAKFSKELEKNGGDKGFTLRKEPLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPY 449 (876)
T ss_pred hhcchhhhhHhhhhcccccccchhhhhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCC
Confidence 988764 599999999999999999999999963 499998
Q ss_pred eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----CCCCC---cEEEEecCCC
Q 010403 402 VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNEP---MVCVSTTNRN 474 (511)
Q Consensus 402 v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g----~l~~g---ev~vsT~NRN 474 (511)
|+++|+|+|+.|+.++.++| ++++|+++||.| .+||||+|+|++++... .+.++ ++||||+|||
T Consensus 450 Vk~~v~PGS~~V~~~l~~~G--------l~~~L~~aGf~i-~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRN 520 (876)
T TIGR01341 450 VKTSLAPGSKVVTDYLAESG--------LLPYLEELGFNL-VGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRN 520 (876)
T ss_pred ccEEEeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-ecCCccccccCCCCCCcchhcccccCCceEEEEeccCCC
Confidence 99999999999999999975 799999999999 69999999998754221 12334 3899999999
Q ss_pred CCCCCCCCCCcEEecCHHHHHHHHHcCCC-----CCcccc
Q 010403 475 FPGRMGHKEGQIYLASPYTAAASALTGYV-----TDPREF 509 (511)
Q Consensus 475 F~GRmG~~~a~iyLASP~tvAAsAl~G~I-----tdpr~~ 509 (511)
|+||||+..+.+|||||++||||||+|+| +||..+
T Consensus 521 FeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~ 560 (876)
T TIGR01341 521 FEGRIHPLVKGNYLASPPLVVAYALAGNIDINLYTEPIGT 560 (876)
T ss_pred CCCCCCCCCCceEECCHHHHHHHHHhCCcccCccCCCccc
Confidence 99999998889999999999999999999 788643
No 28
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=4.8e-111 Score=937.27 Aligned_cols=430 Identities=25% Similarity=0.335 Sum_probs=371.8
Q ss_pred CCcHHHH-HHHHhcCCCCCCCCCeEEEeeeEEEecCCCh-hHHHHH-----HHHHhCCCCcccCCC-cEEEEecCCCCCC
Q 010403 68 AMTLTEK-IFSRASEKPQLSPGDNVWVNVDILMTHDVCG-PGSFGI-----FKKEFGENAKVWDRE-KIVIIPDHYIFTS 139 (511)
Q Consensus 68 ~~Tl~EK-Il~~~~~~~~v~~Gd~v~v~vD~v~~hD~tg-p~~~~~-----~~~e~g~~~~V~~p~-kv~~~~DH~vp~~ 139 (511)
|..+.|+ |.+-..+.+...+|..|.++||++++||+|| |.++++ +..++|.++...+|. ++.+++||++++.
T Consensus 62 ~~~~~~~~~~~~~~w~~~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d 141 (898)
T PTZ00092 62 EFDVTSKDVENILNWEENSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVD 141 (898)
T ss_pred CcCCCHHHHHHHHcCcccCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCC
Confidence 4555533 2222334444467889999999999999999 555552 122367666677886 8999999999775
Q ss_pred c-----HHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecc---------eeeeeCCceEEcCCCCCc
Q 010403 140 D-----ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTC 205 (511)
Q Consensus 140 ~-----~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~e---------eg~~~PG~~vvGtDSHT~ 205 (511)
. ....+...++++.+++|++. .|..+.+.||+++|||+|||||++.| .|++.|| ++||||||||
T Consensus 142 ~~~~~da~~~n~~~e~~rN~ery~fl-~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd-~lvGtDSHT~ 219 (898)
T PTZ00092 142 FSRSPDALELNQEIEFERNLERFEFL-KWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPD-SVVGTDSHTT 219 (898)
T ss_pred CCCCcCHHHHHHHHHHHhhHHHhChH-HhhhhhhcCCcccCCCCceeceechhhhccccccccCcccCC-eEEecCCCCC
Confidence 2 33334445666677777654 38898899999999999999999876 7899995 6999999999
Q ss_pred CCCcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCC
Q 010403 206 TAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLS 285 (511)
Q Consensus 206 t~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls 285 (511)
|+||||+||||||++|++++|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|||+++||
T Consensus 220 ~~GalG~la~GVGg~Eaeaamlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS 299 (898)
T PTZ00092 220 MINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLS 299 (898)
T ss_pred CCCcccccEecccHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccccCceeecccCchhHHHHhhhcCCCCC------------cccc-CCCCCeecEEEEEECCCceeeeec
Q 010403 286 MEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPY------------EPVY-SDEKASFLSEYRFDISKLEPLVAK 352 (511)
Q Consensus 286 ~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~~~------------~~l~-~D~dA~Y~~~i~iDls~leP~VA~ 352 (511)
+++|||||||++|+||++||||+|++|++||+.+++.+. ..++ +|++|.|+++|+||||+|||+||+
T Consensus 300 v~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~~D~da~Y~~vieiDLs~veP~VAg 379 (898)
T PTZ00092 300 LADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRTYAEQIEYSDVLELDLSTVVPSVAG 379 (898)
T ss_pred HHHhhhhhccccccCceEEEecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEcccceEeccC
Confidence 999999999999999999999999999999999776532 1233 799999999999999999999999
Q ss_pred CCCcccccccccccc-------------------------ee--------------eeeEEEecCCCCChHHHHHHHHHH
Q 010403 353 PHSPDNRALARECKD-------------------------VK--------------IDRVYIGSCTGGKTEDFLAAAKVF 393 (511)
Q Consensus 353 P~~Pdnv~~v~e~~~-------------------------~~--------------Id~a~IGSCTngr~eDl~~AA~iL 393 (511)
|++|||+.+++++.. ++ ||+||||||||+|+||+++||+||
T Consensus 380 P~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lL 459 (898)
T PTZ00092 380 PKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLL 459 (898)
T ss_pred CCChhhccCccccCCCHHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHH
Confidence 999999999998853 12 899999999999999999999999
Q ss_pred Hh----cCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----CCCC
Q 010403 394 LA----SGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNE 463 (511)
Q Consensus 394 ~~----~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g----~l~~ 463 (511)
++ +|+||+ |+++|+|+|+.|+.++.++| ++++|+++||.+ .+||||+|+|++++... .+.+
T Consensus 460 akkAv~kG~kv~p~Vk~~v~PGS~~V~~~l~~~G--------l~~~l~~aGf~i-~~~GCg~CiG~~g~l~~~~~~~i~~ 530 (898)
T PTZ00092 460 AKKAVEKGLKVPPYIKTSLSPGSKVVTKYLEASG--------LLKYLEKLGFYT-AGYGCMTCIGNSGDLDPEVSEAITN 530 (898)
T ss_pred HHHHHhcCCccCCCccEEEeCCCHHHHHHHHHcC--------cHHHHHHcCCEE-eCCccccccCcCCCCCchhhhhhcc
Confidence 53 599998 99999999999999999975 799999999999 69999999999765322 2456
Q ss_pred CcE---EEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCC-----Cccc
Q 010403 464 PMV---CVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVT-----DPRE 508 (511)
Q Consensus 464 gev---~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~It-----dpr~ 508 (511)
+++ +|||+||||+||||+..+.+|||||++||||||+|+|+ ||..
T Consensus 531 ~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~dplg 583 (898)
T PTZ00092 531 NDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLG 583 (898)
T ss_pred CCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCceecccccCCcc
Confidence 776 67999999999999988999999999999999999999 7754
No 29
>PLN00070 aconitate hydratase
Probab=100.00 E-value=5.4e-111 Score=938.22 Aligned_cols=412 Identities=23% Similarity=0.337 Sum_probs=365.5
Q ss_pred CCCCeEEEeeeEEEecCCCh-hHHHHH--H---HHHhCCCCcccCCC-cEEEEecCCCCCC----cHHHH-HHHHHHHHH
Q 010403 86 SPGDNVWVNVDILMTHDVCG-PGSFGI--F---KKEFGENAKVWDRE-KIVIIPDHYIFTS----DERAN-RNVDILRDF 153 (511)
Q Consensus 86 ~~Gd~v~v~vD~v~~hD~tg-p~~~~~--~---~~e~g~~~~V~~p~-kv~~~~DH~vp~~----~~~~a-~~~~~~r~f 153 (511)
..+..|.++|++|++||+|+ |.++|+ + .+++|.+++..+|. ++.+++||++... ..... +..+++++.
T Consensus 113 ~~~~ei~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN 192 (936)
T PLN00070 113 PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRN 192 (936)
T ss_pred CCCceeccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHh
Confidence 34568999999999999999 766665 2 23477778888997 8999999999543 22333 334566677
Q ss_pred HHHcCcceeecccccCCcccCCCCCceeeeEecc---------eeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHH
Q 010403 154 CMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGF 224 (511)
Q Consensus 154 ar~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~e---------eg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~ 224 (511)
+++|++. .|+.+.+.||+++|||+|||||+..| +|++.|| ++|||||||||+||||+||||||++|+++
T Consensus 193 ~Ery~fl-kw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~Pd-tlVGtDSHT~~~GglG~lg~GVGg~Eaea 270 (936)
T PLN00070 193 KERFAFL-KWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEA 270 (936)
T ss_pred HHHhChh-hhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCC-eEEeCCcccCCCCcccccEecccHHHHHH
Confidence 7777764 38998999999999999999999999 8999995 59999999999999999999999999999
Q ss_pred HHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceee
Q 010403 225 VLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNG 304 (511)
Q Consensus 225 ~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~ 304 (511)
+|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||++|
T Consensus 271 aMlgqp~~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g 350 (936)
T PLN00070 271 AMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMG 350 (936)
T ss_pred HHhCCeEEeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHhhhcCCCCC---------c-------cccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccce
Q 010403 305 VVPADGTTFKYLEDKTSLPY---------E-------PVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDV 368 (511)
Q Consensus 305 i~~~D~~t~~yl~~r~~~~~---------~-------~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~ 368 (511)
+||+|++|++||+.+++.+. + ...+|++|.|+++++||||+|||+||+|++|||+.+++++...
T Consensus 351 ~FP~De~T~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~ 430 (936)
T PLN00070 351 FFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKAD 430 (936)
T ss_pred EecCChHHHHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhh
Confidence 99999999999999876542 1 1257899999999999999999999999999999999987431
Q ss_pred ---------------------------------------eeeeEEEecCCCCChHHHHHHHHHHHh----cCCcce--ee
Q 010403 369 ---------------------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VP 403 (511)
Q Consensus 369 ---------------------------------------~Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~--v~ 403 (511)
.|++||||||||+|+||+++||+||++ +|+||+ |+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk 510 (936)
T PLN00070 431 WHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIK 510 (936)
T ss_pred HHHhhcccccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 267899999999999999999999964 599998 99
Q ss_pred EEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcc----cCCCCCcE---EEEecCCCCC
Q 010403 404 TFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTY----ARMNEPMV---CVSTTNRNFP 476 (511)
Q Consensus 404 ~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~----g~l~~gev---~vsT~NRNF~ 476 (511)
++|+|+|++|+.++.++| ++++|+++||.+ .+||||+|+|++++.. ..+.+|++ ||||+||||+
T Consensus 511 ~~vaPGS~~V~~~l~~~G--------l~~~L~~aGf~v-~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFe 581 (936)
T PLN00070 511 TSLAPGSGVVTKYLLKSG--------LQKYLNQQGFHI-VGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFE 581 (936)
T ss_pred EEEeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-cCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCC
Confidence 999999999999999975 799999999999 6999999999976431 12567775 7999999999
Q ss_pred CCCCCCCCcEEecCHHHHHHHHHcCCC-----CCccc
Q 010403 477 GRMGHKEGQIYLASPYTAAASALTGYV-----TDPRE 508 (511)
Q Consensus 477 GRmG~~~a~iyLASP~tvAAsAl~G~I-----tdpr~ 508 (511)
||||+..+.+|||||++||||||+|+| +||..
T Consensus 582 GR~gp~~~~~yLaSP~lVaA~AlaG~i~~d~~~dplg 618 (936)
T PLN00070 582 GRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIG 618 (936)
T ss_pred CCCCCCCCceEEcCHHHHHHHHHcCCcccCCCCCCCc
Confidence 999998889999999999999999999 78864
No 30
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=4.1e-111 Score=933.13 Aligned_cols=418 Identities=22% Similarity=0.299 Sum_probs=369.5
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCCh-hHHHHHH-----HHHhCCCCcccCCC-cEEEEecCCCCCC
Q 010403 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCG-PGSFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTS 139 (511)
Q Consensus 67 ~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tg-p~~~~~~-----~~e~g~~~~V~~p~-kv~~~~DH~vp~~ 139 (511)
.+.++.|+|.+-..+ +.+..|.++|++|++||+|+ |.++|+. ..++|.+++..||. ++.+++||++...
T Consensus 49 d~~~~~~~~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd 124 (858)
T TIGR02333 49 DPETLSASLLQIIER----KRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVE 124 (858)
T ss_pred CChhhHHHHHHHHcC----CCCCeeccCcceeeeccccCcchhhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceec
Confidence 456777774444334 35667999999999999999 5555442 13478788889996 8999999999443
Q ss_pred -----cHHHHHHHHHHHHHHHHcCccee--ecccccCCcccCCCCCceeeeEecce---------eeeeCCceEEcCCCC
Q 010403 140 -----DERANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQE---------GHCRPGEVLLGTDSH 203 (511)
Q Consensus 140 -----~~~~a~~~~~~r~far~~gi~~f--~d~~~~~n~~~~Ppg~GI~Hq~l~ee---------g~~~PG~~vvGtDSH 203 (511)
......|.+ ++|.|+..++.| |....+.||+++|||+|||||++.|. |++.| +++||||||
T Consensus 125 ~~g~~~da~~~n~~--~e~~rN~Ery~FLkwa~~af~~~~~~ppG~GI~HQV~lE~la~vv~~~~G~a~P-d~ivGTDSH 201 (858)
T TIGR02333 125 YGGFDPDAFEKNRA--IEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKMSPVIQVKNGVAFP-DTCVGTDSH 201 (858)
T ss_pred cCCCCcchhHHHHH--HHHhhhHHHHHHHHHHHHHhCCcEEeCCCCCEeeeEchhhccccccccCCcccC-CeEEecCCC
Confidence 222233444 488888888888 88888999999999999999999885 89999 689999999
Q ss_pred CcCCCcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccC
Q 010403 204 TCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVER 283 (511)
Q Consensus 204 T~t~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~ 283 (511)
|||+||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++
T Consensus 202 T~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~ 281 (858)
T TIGR02333 202 TPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARA 281 (858)
T ss_pred CCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecCCCCCHhHHHHHHHHHHhhcCccceEEEEeCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhhcccccCceeecccCchhHHHHhhhcCCCC--Cc---------ccc--CCCCCeecEEEEEECCCceeee
Q 010403 284 LSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--YE---------PVY--SDEKASFLSEYRFDISKLEPLV 350 (511)
Q Consensus 284 Ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~~--~~---------~l~--~D~dA~Y~~~i~iDls~leP~V 350 (511)
||+++|||||||++|+||++||||+|++|++||+.+++.+ ++ .+| +|++|.|+++|+||||+|||+|
T Consensus 282 LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~k~~~l~~d~d~~a~Y~~vieiDLs~leP~V 361 (858)
T TIGR02333 282 LTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAKAAGLWADSLKHAVYERVLEFDLSSVVRNM 361 (858)
T ss_pred CCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHHHHHHHHHHHhhcCcCCCCCeEEEEEEEcccceecc
Confidence 9999999999999999999999999999999999877654 11 234 4689999999999999999999
Q ss_pred ecCCCcccccccccccce-----------------eeeeEEEecCCCCChHHHHHHHHHHHh----cCCcce--eeEEEe
Q 010403 351 AKPHSPDNRALARECKDV-----------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTFLV 407 (511)
Q Consensus 351 A~P~~Pdnv~~v~e~~~~-----------------~Id~a~IGSCTngr~eDl~~AA~iL~~----~G~kv~--v~~~V~ 407 (511)
|+|++|||+.+++|+++. +|++||||||||+|+||+++||+||++ +|+||+ |+++|+
T Consensus 362 AgP~~Pd~~vpl~e~~~~~~~~~~~~~~~g~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~ 441 (858)
T TIGR02333 362 AGPSNPHARVPTSDLAARGIAGPAEEQPEGLMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFA 441 (858)
T ss_pred cCCCChhhcCCHHHhhhccccccccccccCcccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEe
Confidence 999999999999998754 378999999999999999999999964 599998 999999
Q ss_pred cCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCC-----------cEEEEecCCCCC
Q 010403 408 PATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEP-----------MVCVSTTNRNFP 476 (511)
Q Consensus 408 PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~g-----------ev~vsT~NRNF~ 476 (511)
|+|++|+.++.++| ++++|+++||.+ .+||||+|+|+++ .+.++ ++||||+||||+
T Consensus 442 PGS~~V~~~l~~~G--------l~~~L~~aGf~v-~~~GCg~CiG~~G----~l~~~~~~~i~~~~~~~~~VsS~NRNF~ 508 (858)
T TIGR02333 442 PGSKVAQLYLEEAG--------LLPELEQLGFGI-VAFACTTCNGMSG----ALDPVIQQEIIDRDLYATAVLSGNRNFD 508 (858)
T ss_pred CCCHHHHHHHHHcC--------cHHHHHHcCCEE-eCCcchhccCcCC----CCCcchhhhhcccCceeEEEeccCCCCC
Confidence 99999999999975 799999999999 6999999999864 33333 589999999999
Q ss_pred CCCCCCCCcEEecCHHHHHHHHHcCCCC
Q 010403 477 GRMGHKEGQIYLASPYTAAASALTGYVT 504 (511)
Q Consensus 477 GRmG~~~a~iyLASP~tvAAsAl~G~It 504 (511)
||||+..+.+|||||++||||||+|+|+
T Consensus 509 GR~g~~~~~~yLASP~lVaA~AlaG~I~ 536 (858)
T TIGR02333 509 GRIHPYAKQAFLASPPLVVAYAIAGTIR 536 (858)
T ss_pred CCCCCCcceeEecCHHHHHHHHHhCcee
Confidence 9999998899999999999999999997
No 31
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=8.2e-99 Score=826.60 Aligned_cols=429 Identities=27% Similarity=0.413 Sum_probs=366.7
Q ss_pred CCCcHHHHHHHHhcCCC---------CCC-------CCCeEEEeeeEEEecCCCh-hHHH------HHHHHHhCCCCccc
Q 010403 67 NAMTLTEKIFSRASEKP---------QLS-------PGDNVWVNVDILMTHDVCG-PGSF------GIFKKEFGENAKVW 123 (511)
Q Consensus 67 ~~~Tl~EKIl~~~~~~~---------~v~-------~Gd~v~v~vD~v~~hD~tg-p~~~------~~~~~e~g~~~~V~ 123 (511)
...+.++|||.+|.-+. .+. +...+..++++|++||+|+ |.++ +.+. ++|.++...
T Consensus 31 ~~Lp~s~kiL~e~l~r~~d~~~~~i~~~~~w~~~~~~~~ei~~~p~RVvmQD~tgvpa~vdla~mr~a~~-~~g~dp~~i 109 (861)
T COG1048 31 SKLPYSLKILLENLLRGEDGTEEHIEALARWLPSGKPEKEIAFRPARVVMQDFTGVPAVVDLAAMRDAMV-ELGGDPAKI 109 (861)
T ss_pred ccCChhHHHHHHHhccccccchhHHHHHhccccccCcccccccccceeeeecccCCCeeEEhhhHHHHHH-HhcCChhhc
Confidence 45688999999887443 112 2356889999999999999 4333 2233 466544444
Q ss_pred CC-CcEEEEecCCCCCC----cHHHHHHHHHHHHHHHHcCccee--ecccccCCcccCCCCCceeeeEeccee----eee
Q 010403 124 DR-EKIVIIPDHYIFTS----DERANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQEG----HCR 192 (511)
Q Consensus 124 ~p-~kv~~~~DH~vp~~----~~~~a~~~~~~r~far~~gi~~f--~d~~~~~n~~~~Ppg~GI~Hq~l~eeg----~~~ 192 (511)
+| -++.+++||++... ....+.|.+ ++|.|+..++.| |..+.|.||+++|||.|||||+..|.. +.+
T Consensus 110 nP~~pvdLviDHsv~vd~~g~~~a~~~n~~--~e~~rN~ery~FL~w~~kaf~n~~vvPPGtGIiHQVnLE~la~vv~~~ 187 (861)
T COG1048 110 NPVVPVDLVIDHSVQVDVGGDPDAFEKNVE--LEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQVNLEYLAKVVWAK 187 (861)
T ss_pred CCCCcceeeecceeeeecCCChhhhhhhhh--hHhhhhhHHHHHHHHHHHhcCCcEEECCCCceeeeehHhhhccceecc
Confidence 55 59999999999543 222334433 378888888777 777778999999999999999876642 444
Q ss_pred CC----ceEEcCCCCCcCCCcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccC
Q 010403 193 PG----EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAG 268 (511)
Q Consensus 193 PG----~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g 268 (511)
|| |++|||||||+|+|+||+||||||++|++++|+++++||++||+|+|+|+|+||+|||||||||+|++.|+.+|
T Consensus 188 ~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGVkLtGkl~~gvTatDlvL~vt~~Lr~~g 267 (861)
T COG1048 188 PGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKG 267 (861)
T ss_pred CcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEEEEeccCCCCCCHHHHHHHHHHHHHhcC
Confidence 89 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecccccCCChhhhhhhhhcccccCceeecccCchhHHHHhhhcCCCC--------Ccc---c---cCCCCCe
Q 010403 269 ATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--------YEP---V---YSDEKAS 334 (511)
Q Consensus 269 ~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~~--------~~~---l---~~D~dA~ 334 (511)
.++|+|||+|||+++||+++|+|||||++|+||++|+||.|++|++||+.++|.+ |-. + .+|++|+
T Consensus 268 vVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR~~~~i~lve~y~~~~~l~~~~~~~~a~ 347 (861)
T COG1048 268 VVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWYDPADKDAE 347 (861)
T ss_pred ccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCCchHHHHHHHHHHHHhcccCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999988743 211 2 2567999
Q ss_pred ecEEEEEECCCceeeeecCCCcccccccccccc------------------------eeeeeEEEecCCCCChHHHHHHH
Q 010403 335 FLSEYRFDISKLEPLVAKPHSPDNRALARECKD------------------------VKIDRVYIGSCTGGKTEDFLAAA 390 (511)
Q Consensus 335 Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~------------------------~~Id~a~IGSCTngr~eDl~~AA 390 (511)
|+++++||||+|+|.||+|++|+|+.++++++. .+|.+++|+||||++++|++.||
T Consensus 348 Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~V~iaaItSCTNtSnp~v~~aA 427 (861)
T COG1048 348 YDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVYSLLGKELGDGKVVIAAITSCTNTSNPDVLIAA 427 (861)
T ss_pred cceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcccccccccccCCCCcEEEEEEeeccCCCCHHHHHHH
Confidence 999999999999999999999999999988765 68999999999999999999999
Q ss_pred HHHHh----cCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----C
Q 010403 391 KVFLA----SGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----R 460 (511)
Q Consensus 391 ~iL~~----~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g----~ 460 (511)
.||++ +|++++ |++.|+|+|+.|...+.+.| ++++|+++||.+ .++||++|+|+++.+.. .
T Consensus 428 gllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~G--------l~~~L~~lGf~i-v~~gCttCIGnsg~L~~~i~~~ 498 (861)
T COG1048 428 GLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAG--------LLPYLEKLGFNI-VGYGCTTCIGNSGPLPEEIEKA 498 (861)
T ss_pred HHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcC--------CHHHHHhcCCEE-eccccccccCCCCCCChhhhhc
Confidence 99984 588887 99999999999999998864 799999999999 69999999999754221 2
Q ss_pred CCCCc---EEEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCC-CCcc
Q 010403 461 MNEPM---VCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV-TDPR 507 (511)
Q Consensus 461 l~~ge---v~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~I-tdpr 507 (511)
+.+++ .+|.|+||||+||+|+.....|||||++|+||||+|.| .|++
T Consensus 499 I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~i~~d~~ 549 (861)
T COG1048 499 INDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTINFDLT 549 (861)
T ss_pred cccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcccccCcc
Confidence 34444 34679999999999999999999999999999999999 4553
No 32
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-90 Score=728.69 Aligned_cols=418 Identities=28% Similarity=0.423 Sum_probs=369.6
Q ss_pred CCCCCCC-CCcHHHHHHHHhcCCC----CCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCC
Q 010403 61 TTGSVKN-AMTLTEKIFSRASEKP----QLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHY 135 (511)
Q Consensus 61 ~~~~~~~-~~Tl~EKIl~~~~~~~----~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~ 135 (511)
+....++ +.|++||||..|+... .++-++++.++||++++||.|..+++-.|.. .| ..+|..|.. +..||.
T Consensus 50 v~k~l~~~p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFms-~G-l~kvavPst--IhCdhl 125 (778)
T KOG0453|consen 50 VKKRLNKPPLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFMS-SG-LKKVAVPST--IHCDHL 125 (778)
T ss_pred HHHHhcCCCchhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHHHHh-cC-cccccCCce--EEecce
Confidence 3334445 6999999999998543 4667899999999999999998776666643 66 478888855 588997
Q ss_pred CCCC-----c-----HHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCc
Q 010403 136 IFTS-----D-----ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTC 205 (511)
Q Consensus 136 vp~~-----~-----~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~ 205 (511)
+-+. | ....+.+++|..||++|||. || |||.||+||++.|+ |+.||.++|||||||+
T Consensus 126 i~a~~gg~~Dl~~a~~~Nkevydfl~saakkygi~-Fw-----------~pGsGIiHQIvlEn-YAfPG~m~igTDSHTp 192 (778)
T KOG0453|consen 126 IEAQVGGDKDLQRASDLNKEVYDFLESAAKKYGIG-FW-----------KPGSGIIHQIVLEN-YAFPGLMMIGTDSHTP 192 (778)
T ss_pred eeeccCCcchhhhhhhhhHHHHHHHHHHHHhcCCC-cc-----------CCCCceeeeeeeec-ccCCcceEEeccCCCC
Confidence 7432 2 22334579999999999997 46 46889999999887 9999999999999999
Q ss_pred CCCcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCC
Q 010403 206 TAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLS 285 (511)
Q Consensus 206 t~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls 285 (511)
++|+||++++|||++|++.+|++.++.++.|++++|+|+|+|+.|+++|||||+|.+.|.++|+++++|||+||||++||
T Consensus 193 n~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slS 272 (778)
T KOG0453|consen 193 NAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLS 272 (778)
T ss_pred CCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceec
Confidence 99999999999999999999999777699999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccccCceeecccCchhHHHHhhhcCCCCC---------ccccCCCCCeecEEEEEECCCceeeeecCCCc
Q 010403 286 MEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPY---------EPVYSDEKASFLSEYRFDISKLEPLVAKPHSP 356 (511)
Q Consensus 286 ~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~~~---------~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~P 356 (511)
.+.|.|||||.+|.||++++||.|++..+||+..++... ..+.+|++|.|++.|+||||+|+|.|.+|++|
T Consensus 273 ctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~ia~~a~~~~~~~l~AD~~a~Ydk~ieIdLstL~P~vnGPfTp 352 (778)
T KOG0453|consen 273 CTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEIAREARETLDAILAADKGAHYDKIIEIDLSTLEPHVNGPFTP 352 (778)
T ss_pred cccceeeccccccccccccccCCCHHHHHHHHHhCcccchhhhHHhhhhcccCCCCCCcceEEEEEhhhcccccCCCCCc
Confidence 999999999999999999999999999999998776432 24789999999999999999999999999999
Q ss_pred ccccccccccc--------eeeeeEEEecCCCCChHHHHHHHHHHH---hcCCcceeeEEEecCcHHHHHHHhcCCCCCC
Q 010403 357 DNRALARECKD--------VKIDRVYIGSCTGGKTEDFLAAAKVFL---ASGKKVKVPTFLVPATQKVWMDVYTLPVPGS 425 (511)
Q Consensus 357 dnv~~v~e~~~--------~~Id~a~IGSCTngr~eDl~~AA~iL~---~~G~kv~v~~~V~PaS~~V~~~a~~~g~~g~ 425 (511)
|-..|++++.. .+|-..+||||||+|||||-.||.|++ .+|+|.+|.++|+|+|.+|...+.+.
T Consensus 353 dl~~pvskl~e~~~kn~wp~~i~~gligSCTNSsyeDm~raa~iv~~a~~~glk~~v~F~VtpgSeqirAtierd----- 427 (778)
T KOG0453|consen 353 DLSTPVSKLGENSEKNGWPIKIKVGLIGSCTNSSYEDMSRAADIVKQAKGKGLKPKVPFYVTPGSEQIRATIERD----- 427 (778)
T ss_pred cccChHHHHhHHhhhcCCceeeeeeEEEeecCccHHHHHHHHHHHHHHHhcCCCCCcceEeccChHHhhhhHhhc-----
Confidence 99999988764 678899999999999999999999996 45777779999999999999888775
Q ss_pred CCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEE--EEecCCCCCCCCCCCC-CcEEecCHHHHHHHHHcCC
Q 010403 426 GGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVC--VSTTNRNFPGRMGHKE-GQIYLASPYTAAASALTGY 502 (511)
Q Consensus 426 ~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~--vsT~NRNF~GRmG~~~-a~iyLASP~tvAAsAl~G~ 502 (511)
|.+++|.++|+.+ ++.+||||+|.+.. -.+.+||+- |++.||||.|||+... ...||+||++|+|+|++|+
T Consensus 428 ---G~~e~l~~~G~~v-LanaCGPCIGqw~r--~dvk~GE~ntivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG~ 501 (778)
T KOG0453|consen 428 ---GIWETLEKAGGIV-LANACGPCIGQWDR--KDIKKGEKNTIVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAGD 501 (778)
T ss_pred ---chHHHHHhcCCEE-cccCcCCccccccc--ccccCCCcCceeeeecccccccCCCCcchhhcccCHHHHHHHHHhcc
Confidence 4799999999998 79999999998743 147788865 9999999999998766 8899999999999999999
Q ss_pred CCCc
Q 010403 503 VTDP 506 (511)
Q Consensus 503 Itdp 506 (511)
+.-|
T Consensus 502 l~fn 505 (778)
T KOG0453|consen 502 LSFN 505 (778)
T ss_pred ccCC
Confidence 9855
No 33
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-79 Score=643.63 Aligned_cols=420 Identities=23% Similarity=0.359 Sum_probs=354.2
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCCh-hHHHHHH-----HHHhCCCCcccCCC-cEEEEecCCCCCCc--
Q 010403 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCG-PGSFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTSD-- 140 (511)
Q Consensus 70 Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tg-p~~~~~~-----~~e~g~~~~V~~p~-kv~~~~DH~vp~~~-- 140 (511)
-=.||||.=... .+.--.|-.++-+|++||+|| |.++|.. .+.+|.++...||- ++.+++||++...-
T Consensus 61 ~DVe~IldW~~t---~~k~vEvpFkPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r 137 (892)
T KOG0452|consen 61 KDVENILDWKNT---QKKQVEVPFKPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFAR 137 (892)
T ss_pred HHHHHHhCcccc---CccceeeccccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeecc
Confidence 446777763221 111225778999999999999 6665442 13477777777885 89999999995432
Q ss_pred -H-HHHHHHHHHHHHHHHcCccee--ecccccCCcccCCCCCceeeeE---------ecceeeeeCCceEEcCCCCCcCC
Q 010403 141 -E-RANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIA---------LAQEGHCRPGEVLLGTDSHTCTA 207 (511)
Q Consensus 141 -~-~~a~~~~~~r~far~~gi~~f--~d~~~~~n~~~~Ppg~GI~Hq~---------l~eeg~~~PG~~vvGtDSHT~t~ 207 (511)
. ..++|+.. +|.|+..+..| |....+.|+.++|||.||+||+ +.+..++.| |.+|||||||+|.
T Consensus 138 ~~~alqkN~~l--EF~RNkERf~FlKWgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyP-DSvVGTDSHtTMi 214 (892)
T KOG0452|consen 138 SADALQKNQEL--EFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYP-DSVVGTDSHTTMI 214 (892)
T ss_pred CHHHHhhccee--eeecchhhhhhhhhhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecc-cccccccCcceee
Confidence 2 22333333 67777766556 7777789999999999999995 333567778 8999999999999
Q ss_pred CcccceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChh
Q 010403 208 GAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSME 287 (511)
Q Consensus 208 GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~ 287 (511)
.++|++|||||+.|++++|+++++.|.+||+|+.+|+|+|.++||+.||+|.|.+.|+..|.+||+|||+|+|+.+||+.
T Consensus 215 dGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSia 294 (892)
T KOG0452|consen 215 DGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIA 294 (892)
T ss_pred cccceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccccCceeecccCchhHHHHhhhcCCCCCc------------cc----cCCCCCeecEEEEEECCCceeeee
Q 010403 288 ERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYE------------PV----YSDEKASFLSEYRFDISKLEPLVA 351 (511)
Q Consensus 288 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~~~~------------~l----~~D~dA~Y~~~i~iDls~leP~VA 351 (511)
+|+||+||++|+||+.|+||.|+.|++||+..++.+-+ .+ .++.+..|.+++++||++++|+|+
T Consensus 295 DRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vS 374 (892)
T KOG0452|consen 295 DRATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVS 374 (892)
T ss_pred hhhhhhhcCccccceeeeeccchhHHHHHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccC
Confidence 99999999999999999999999999999987764311 11 256688999999999999999999
Q ss_pred cCCCcccccccccccc---------------------------------------eeeeeEEEecCCCCChHHHHHHHHH
Q 010403 352 KPHSPDNRALARECKD---------------------------------------VKIDRVYIGSCTGGKTEDFLAAAKV 392 (511)
Q Consensus 352 ~P~~Pdnv~~v~e~~~---------------------------------------~~Id~a~IGSCTngr~eDl~~AA~i 392 (511)
+|.+|++++++++++. -.|-++.|.||||++++..|.+|.+
T Consensus 375 GPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgL 454 (892)
T KOG0452|consen 375 GPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGL 454 (892)
T ss_pred CCCCCccccchhhHHHHHHHhhcCcccccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhH
Confidence 9999999999987652 1345799999999999999999999
Q ss_pred HHhc----CCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----CCC
Q 010403 393 FLAS----GKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMN 462 (511)
Q Consensus 393 L~~~----G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g----~l~ 462 (511)
|+++ |++|+ +++.+.|+|.-|-..+.+.| ++.+|.+.|+.| .++||.+|+|++++... .+.
T Consensus 455 lAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~SG--------v~pyL~klGF~I-vGYGC~TCiGNsgpl~e~V~~ai~ 525 (892)
T KOG0452|consen 455 LAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSESG--------VLPYLEKLGFDI-VGYGCMTCIGNSGPLDEAVVNAIE 525 (892)
T ss_pred HHHHHHhcCceecceeecccCCCCchhhhhhhhcc--------chhHHHhcCcee-eccccceeccCCCCCCHHHHHhhh
Confidence 9864 88887 99999999999998888764 799999999999 69999999998754322 234
Q ss_pred CCcE---EEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCC
Q 010403 463 EPMV---CVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVT 504 (511)
Q Consensus 463 ~gev---~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~It 504 (511)
++++ .|.|+||||+||.++....+|||||++|.||||+|++.
T Consensus 526 ~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaYaiaGtV~ 570 (892)
T KOG0452|consen 526 QNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAYAIAGTVN 570 (892)
T ss_pred cCCeEEEEEeecCCCccccccccchhhhccCchHHhhhhhcceee
Confidence 4543 38999999999999999999999999999999999985
No 34
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=5.7e-69 Score=568.33 Aligned_cols=419 Identities=25% Similarity=0.378 Sum_probs=368.3
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecC
Q 010403 55 SERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDH 134 (511)
Q Consensus 55 ~~r~~~~~~~~~~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH 134 (511)
-=|.|....+..+|.|++|||+.+++|.+.++||..+..++..|.+||.||||+.+.+++ +- .-.|+-|-+...+.|
T Consensus 359 ~F~~p~~p~~sgkG~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~-lA--clgfsaD~vmQSfCH 435 (852)
T COG1049 359 VFRKPKAPAESGKGFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKD-LA--CLGFSADLVMQSFCH 435 (852)
T ss_pred hccCCCCccccCCcccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHH-HH--hhcccchhhhhhccc
Confidence 446666666777999999999999999999999999999999999999999999999964 42 235788889999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCccccee
Q 010403 135 YIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFA 214 (511)
Q Consensus 135 ~vp~~~~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a 214 (511)
..--.++...++|..+-+|..+.|- +... ||.||+|.||.+ +++|..+..|+||||.+.-+ ++
T Consensus 436 TAaypkpvdv~th~~Lp~Fi~~rGg-----------Vslr-pgdGVIHswLNr--mllpDtvgtGGDSHTRfpiG---is 498 (852)
T COG1049 436 TAAYPKPVDVKTHHTLPDFIMNRGG-----------VSLR-PGDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG---IS 498 (852)
T ss_pred ccccCCccchhccccchHHHhhcCc-----------eecC-CCCccHHHHHHh--ccCCcceecCCccccccccc---ce
Confidence 9866667777788888888766553 3444 488999999976 89999999999999999754 78
Q ss_pred ccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHH----HH--HhhccC------CCceEEEEeccccc
Q 010403 215 TGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----IG--EISVAG------ATYKSMEFVGTTVE 282 (511)
Q Consensus 215 ~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~l----i~--~l~~~g------~~~~~vEF~G~~v~ 282 (511)
|+.|+.-+|++.+||.+.|.+||+|.|+++|+|+||++-+||+.+| |+ .|.+.+ ..|+++|. +|+.
T Consensus 499 FpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEi--eglp 576 (852)
T COG1049 499 FPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEI--EGLP 576 (852)
T ss_pred ecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEe--ccCc
Confidence 9999999999999999999999999999999999999999999886 33 355333 36888888 4689
Q ss_pred CCChhhhhhhhhcccccCceeecc-cCchhHHHHhhhcC----------CC-------------CC----ccccCCCCCe
Q 010403 283 RLSMEERMTLCNMVVEAGGKNGVV-PADGTTFKYLEDKT----------SL-------------PY----EPVYSDEKAS 334 (511)
Q Consensus 283 ~Ls~~~R~Tl~NMa~E~GA~~~i~-~~D~~t~~yl~~r~----------~~-------------~~----~~l~~D~dA~ 334 (511)
+|.+|+-++|+..+.|+.|+.+.+ -.++...+||+.+. .. .| ..+.+|.||+
T Consensus 577 ~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~lle~D~dAe 656 (852)
T COG1049 577 DLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELLEADADAE 656 (852)
T ss_pred ccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCccccCCCCCCc
Confidence 999999999999999999999854 57888999998642 11 12 3468999999
Q ss_pred ecEEEEEECCCc-eeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCcceeeEEEecCcHHH
Q 010403 335 FLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKV 413 (511)
Q Consensus 335 Y~~~i~iDls~l-eP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~kv~v~~~V~PaS~~V 413 (511)
|..+|+|||++| ||++++|++||+++.++|+.+.+||.||||||... +.++|++|++|++.+..+++|+||+|.|+..
T Consensus 657 YaavIeidL~~IkEPila~PNdpDd~r~lse~~~~~idevFiGSCMtn-iGh~ra~~klL~~~~~~~~~rLwvapPTkmd 735 (852)
T COG1049 657 YAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGDKIDEVFIGSCMTN-IGHFRAAGKLLENAKGELPTRLWVAPPTKMD 735 (852)
T ss_pred eeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCCccceeeeehhhcc-chhHHHHHHHHHhcccCCCcceEecCCcccc
Confidence 999999999999 99999999999999999999999999999999987 6999999999996655678999999999999
Q ss_pred HHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHHH
Q 010403 414 WMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYT 493 (511)
Q Consensus 414 ~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~t 493 (511)
-.|+.++ |++.+|-++|+.++ .|||+.|+|+ |.+.++|.+++||++|||++|||. ++.+||+|.++
T Consensus 736 ~~qL~~E--------G~y~ifg~agar~E-~PGCsLCMGN----Qarv~dgatV~sTSTRnF~nRlg~-~a~vyL~Sael 801 (852)
T COG1049 736 AAQLTEE--------GYYSIFGKAGARIE-MPGCSLCMGN----QARVADGATVFSTSTRNFPNRLGK-GANVYLASAEL 801 (852)
T ss_pred HHHHhhc--------chHHHHhhccceec-CCCccccccc----HhhhccCCEEEeeccccCCccccc-ccceeeeccHH
Confidence 9998886 48999999999996 7999999998 568899999999999999999995 79999999999
Q ss_pred HHHHHHcCCCCCccccc
Q 010403 494 AAASALTGYVTDPREFL 510 (511)
Q Consensus 494 vAAsAl~G~Itdpr~~~ 510 (511)
+|.+|+.|+|...+||+
T Consensus 802 aav~aiLGkiPt~eEY~ 818 (852)
T COG1049 802 AAVCAILGKIPTVEEYM 818 (852)
T ss_pred HHHHHHHcCCCCHHHHH
Confidence 99999999999999985
No 35
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-65 Score=521.46 Aligned_cols=497 Identities=30% Similarity=0.297 Sum_probs=464.3
Q ss_pred CCCcCCCCCCCCcccccccccCcccccCCcccccchhhcccccccEEEeeCCCCCCCCCCCCCCCCCCCcHHHHHHHHhc
Q 010403 1 MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRAS 80 (511)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~Tl~EKIl~~~~ 80 (511)
|++...++|+.+.+.+ +-++....++..+|-+...|.+.+...+..++++|++ +|+|.++|+++.|||++|||+++..
T Consensus 1 y~k~rplaPkg~~we~-avaywktl~~de~ak~dhe~~i~aidv~pt~twgtsp-qd~~pitGsvpdp~~vtd~i~a~~~ 78 (502)
T KOG0454|consen 1 YAKVRPLAPKGCKWES-AVAYWKTLFPDESAKSDHECQIKAIDVKPTSTWGTSP-QDSPPITGSVPDPMTVTDKILARAS 78 (502)
T ss_pred CCCcccCCccccchhh-hhhhhhcccCcccccceeeeeccccceeeeeeecCCc-ccCCCcCCcCCCCcccchHHHHhhh
Confidence 5666677777777766 7778888899999888888888889999999999995 5999999999999999999999999
Q ss_pred CCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCcc
Q 010403 81 EKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIK 160 (511)
Q Consensus 81 ~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~~~~~r~far~~gi~ 160 (511)
.+.-+.+|+..|+++|.+|.||+.+|.....+.+++++.++||||+|+++.+||+++.++....+++.++|..+|.+++.
T Consensus 79 ersL~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ea 158 (502)
T KOG0454|consen 79 ERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVVDGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEA 158 (502)
T ss_pred hhceeeccCCCCcccceeeecceeccccccccHHHHhhhhhccccceeEecccceEEecCchhhHhHHHHHhhHHHHHhh
Confidence 99888999999999999999999999999999889998889999999999999999999999999999999999999999
Q ss_pred eeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcceEEeecCCeee
Q 010403 161 YFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLR 240 (511)
Q Consensus 161 ~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~~~lkvPetv~ 240 (511)
.||+..+..+|++.|...|+||.....+++.+|++...|+||||++.+++++||.|++++++.....+++..+++|++++
T Consensus 159 gF~wreagcs~clgmnpd~l~~yercastsnRnfEgrqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~ 238 (502)
T KOG0454|consen 159 GFYWREAGCSFCLGMNPDGLCHYERCASTSNRNFEGRQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPF 238 (502)
T ss_pred ceehhhccccccccCCchhccHHHHhhhccCCCccccccccccchhhhhhHHhhccccccccccccccccccccCCCCce
Confidence 99888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccCchhHHHHhhhcC
Q 010403 241 FVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKT 320 (511)
Q Consensus 241 V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yl~~r~ 320 (511)
++++|+.++-..++|+++.++...-.++..++.+||.+... +|+|+.|+|||||..|.+-+.+|+|+|-.|+-|-....
T Consensus 239 l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~ 317 (502)
T KOG0454|consen 239 LTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLI 317 (502)
T ss_pred EEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCcceeeeehhhhhhCCcCcccChhhhcccccchhh
Confidence 99999999999999999999999999999999999998888 99999999999999999999999999988887776665
Q ss_pred CCCCccccCCCC-CeecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHHHhcCCc
Q 010403 321 SLPYEPVYSDEK-ASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKK 399 (511)
Q Consensus 321 ~~~~~~l~~D~d-A~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL~~~G~k 399 (511)
+..+-.++.|.+ +.|...+.+|.+.++|.+..|++ ||.---++.+..||+..++|+|+.+..++.+++++..-+.|++
T Consensus 318 ~~~f~~~~~dg~~k~~~~dFv~~vE~~~~~siii~~-DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~~atG~l 396 (502)
T KOG0454|consen 318 LSCFYEVALDGLPKSFVTDFVLPVEPLRKYSIIIGG-DNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNSVATGEL 396 (502)
T ss_pred hhhhhhheecCCchhhccceeccccccceeEEEecc-CCcccccccccCcchhhhcccceecchhHHHHHHHhHHhcCCc
Confidence 556666777777 89999999999999999999999 9999999999999999999999999999999999999888999
Q ss_pred ceeeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCC
Q 010403 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRM 479 (511)
Q Consensus 400 v~v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRm 479 (511)
+.+...+.|..+.+|.+-+...+++.++..++.++.+.++. .+.|-|+.|++++.|..++...-+.+|+|+||||++||
T Consensus 397 ~~~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f-~lkP~~~aclV~~ad~I~~~~~ke~mIss~~a~r~e~~ 475 (502)
T KOG0454|consen 397 PPLPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYF-KLKPFGDACLVIDADGIFAYARKEGMISSTEANRPERM 475 (502)
T ss_pred cCCCceeeecccceecceeeEEcccCCcceeeeeeccccee-ecCcccccCcccCchHHHHhhccccccchhhhcCcccc
Confidence 99999999999999999888888888888899999999993 36899999999987667788888999999999999999
Q ss_pred CCCCCcEEecCHHHHHHHHHcCC
Q 010403 480 GHKEGQIYLASPYTAAASALTGY 502 (511)
Q Consensus 480 G~~~a~iyLASP~tvAAsAl~G~ 502 (511)
|++++++|||||.+|+|++++|+
T Consensus 476 ~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 476 GHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred CccccceEEccccchhhhhhcCC
Confidence 99999999999999999999998
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.90 E-value=1.2e-24 Score=225.42 Aligned_cols=172 Identities=30% Similarity=0.426 Sum_probs=151.4
Q ss_pred CCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccc-------------------------------cccceeee
Q 010403 323 PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR-------------------------------ECKDVKID 371 (511)
Q Consensus 323 ~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~-------------------------------e~~~~~Id 371 (511)
.|..+++|+.|.|+-+++|..-++.|.+.|..+|+++-|+. .+.-.++|
T Consensus 20 ywktl~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~d 99 (502)
T KOG0454|consen 20 YWKTLFPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTDKILARASERSLVYMGLNPNTNVDSLMTD 99 (502)
T ss_pred hhhcccCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccchHHHHhhhhhceeeccCCCCcccceeeec
Confidence 36678899999999999999999999999999999876643 11225789
Q ss_pred eEEEecCCCCChHHHHHHHHHHHhcCCccee---eEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCc
Q 010403 372 RVYIGSCTGGKTEDFLAAAKVFLASGKKVKV---PTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCG 448 (511)
Q Consensus 372 ~a~IGSCTngr~eDl~~AA~iL~~~G~kv~v---~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg 448 (511)
.||||||||+|+|||+.||++++ |.|+.| ..+++|+|+-|.+++..+ |+.++|.++||.|+ ..||.
T Consensus 100 kVfigsctn~riedlr~aAaVv~--g~Kia~n~k~am~vpgsglvkk~aeae--------gld~if~eagF~wr-eagcs 168 (502)
T KOG0454|consen 100 KVFIGSCTNIRIEDLREAAAVVD--GEKIAVNPKHAMFVPGSGLVKKVAEAE--------GLDRIFNEAGFYWR-EAGCS 168 (502)
T ss_pred ceeccccccccHHHHhhhhhccc--cceeEecccceEEecCchhhHhHHHHH--------hhHHHHHhhceehh-hcccc
Confidence 99999999999999999999999 889873 378999999999998875 58999999999995 89999
Q ss_pred cccCCCCCcccCCCCCcEEEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCCCcccc
Q 010403 449 ACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 509 (511)
Q Consensus 449 ~C~G~~~~~~g~l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~Itdpr~~ 509 (511)
.|+|++.+ .+-.-|+|-||+||||+||+|. +++.+|+||...+|..+.|+..+-+++
T Consensus 169 ~clgmnpd---~l~~yercastsnRnfEgrqGa-~srThlma~s~qfAagi~~~~~~~~~~ 225 (502)
T KOG0454|consen 169 FCLGMNPD---GLCHYERCASTSNRNFEGRQGA-DSRTHLMAASMQFAAGIGGHDLGFREF 225 (502)
T ss_pred ccccCCch---hccHHHHhhhccCCCccccccc-cccchhhhhhHHhhccccccccccccc
Confidence 99998654 3566789999999999999996 699999999999999999998887765
No 37
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=97.11 E-value=0.0093 Score=64.14 Aligned_cols=288 Identities=16% Similarity=0.178 Sum_probs=154.3
Q ss_pred CcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCc
Q 010403 139 SDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (511)
Q Consensus 139 ~~~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG 218 (511)
-+....+.++++.+.-++.|+..-|... +.+--++|..|=-+.| .|..-+-=-..|+|+ .|...| |
T Consensus 92 ~~~~~~~~q~~i~~a~~~mG~~~t~TCt--PY~~~~~P~~Ge~iAW-~ESsAV~yaNSVlGA--RTNreg---------~ 157 (400)
T PF04412_consen 92 VDEEFAEKQKRIIDAYRKMGAQPTFTCT--PYLLGNRPRFGEHIAW-SESSAVIYANSVLGA--RTNREG---------G 157 (400)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcccccCc--CccCCCCCCCCCEEEE-ecccceeeeecccch--hcCCCC---------c
Confidence 3566677777888888888876533332 1222223343432222 233222112344444 444555 3
Q ss_pred hhHHHHHHhcceEE---eecC----CeeeEEEEeeCCCCCcHHHHHHHHHHHh-hccCCCceEEEEecccccCCChhhhh
Q 010403 219 NTDAGFVLGTGKVL---LKVP----PTLRFVLDGEMPDYLLAKDLILQIIGEI-SVAGATYKSMEFVGTTVERLSMEERM 290 (511)
Q Consensus 219 ~td~a~~l~tg~~~---lkvP----etv~V~l~G~l~~gV~aKDviL~li~~l-~~~g~~~~~vEF~G~~v~~Ls~~~R~ 290 (511)
-++++.++ ||++. +-+. .++.|+++..+.. .|.--.+||.+ |.. ....+=-|.|--- ..+.|+--
T Consensus 158 ~~al~aAi-tGrtP~~G~hl~EnR~~~~~v~v~~~~~~----d~~~~~~LG~~iG~~-~~~~IPvi~g~~~-~p~~d~lK 230 (400)
T PF04412_consen 158 PSALAAAI-TGRTPYYGLHLDENRRATILVEVEAPPEE----DDADWGLLGYLIGKK-VGDRIPVITGLER-RPSEDDLK 230 (400)
T ss_pred HHHHHHHH-hCCCCcccccCccCCCCeEEEEeCCCCCc----CcchHHHHHHHHHHh-cCCCcCeEeCCCC-CCCHHHHH
Confidence 44444444 66554 2222 3688999888876 33344455442 211 1112222332211 35555544
Q ss_pred hhhhcccccCceee--cccCchhHHHHhhhcCCCCCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccce
Q 010403 291 TLCNMVVEAGGKNG--VVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDV 368 (511)
Q Consensus 291 Tl~NMa~E~GA~~~--i~~~D~~t~~yl~~r~~~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~ 368 (511)
.++ ..+++..+ +|-....|= +.+.+...-+-. .++|+|+.++|+=.... +..-.+.
T Consensus 231 ~lg---AA~Atsgs~~m~Hi~GvTP---------Ea~~~~~a~~~~-~e~i~i~~~dl~~~~~~---------l~~~~~~ 288 (400)
T PF04412_consen 231 ALG---AAMATSGSVAMFHIVGVTP---------EAPTLEAAFGGK-AERITITDADLEEVYEE---------LNTAGDE 288 (400)
T ss_pred HHh---hhhhcccceeeEEEeCCCC---------CCCcchhhhcCC-ceEEEeCHHHHHHHHHH---------hccCCCC
Confidence 443 33333322 343222220 111111111112 68899988887643332 1123456
Q ss_pred eeeeEEEecCCCCChHHHHHHHHHHHhcCCc--ceeeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCC
Q 010403 369 KIDRVYIGSCTGGKTEDFLAAAKVFLASGKK--VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPS 446 (511)
Q Consensus 369 ~Id~a~IGSCTngr~eDl~~AA~iL~~~G~k--v~v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pg 446 (511)
++|.|+|| |=--+++.|+..|++|+ ||| .+++++|. .++.|+.++.+. |+.++|+++|+++ ..
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll~--gr~~~~~~~~~i~-t~~~v~~~a~~~--------G~~~~le~~G~~i-v~-- 353 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELLE--GRKVHPNVPLWIT-TSRAVYELAERM--------GYVERLEKAGVQI-VT-- 353 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHHh--CCCCCCCceEEEE-CCHHHHHHHHhC--------CHHHHHHHcCCEE-Ec--
Confidence 99999998 77888999999999999 666 45888777 578999999886 4899999999998 43
Q ss_pred CccccCCCCCcccCCCCCcEEEEecC----CCCCCCCCCCCCcEEecCHH
Q 010403 447 CGACLGGPKDTYARMNEPMVCVSTTN----RNFPGRMGHKEGQIYLASPY 492 (511)
Q Consensus 447 Cg~C~G~~~~~~g~l~~gev~vsT~N----RNF~GRmG~~~a~iyLASP~ 492 (511)
++|+-... ....+...| .|| .++-.++. +.+++|+|=+
T Consensus 354 -dTC~~v~p----~~~~~~~~v-~TnS~K~a~Y~~~~~--g~~v~~~sl~ 395 (400)
T PF04412_consen 354 -DTCMVVSP----IIPKGYKVV-ATNSGKAAHYLPGLC--GVKVRFGSLE 395 (400)
T ss_pred -cccceecc----ccCCCCceE-EECcHHHHHhccccC--CCceEecCHH
Confidence 33654321 122333332 233 55666553 2467776643
No 38
>COG1679 Predicted aconitase [General function prediction only]
Probab=96.97 E-value=0.012 Score=62.30 Aligned_cols=294 Identities=14% Similarity=0.145 Sum_probs=166.9
Q ss_pred EeeeEEEecCCChhHHHHHHHH--HhCCCCcccCCC-cEEEEecCCCCC---CcHHHHHHHHHHHHHHHHcCcceeeccc
Q 010403 93 VNVDILMTHDVCGPGSFGIFKK--EFGENAKVWDRE-KIVIIPDHYIFT---SDERANRNVDILRDFCMEQNIKYFYDIK 166 (511)
Q Consensus 93 v~vD~v~~hD~tgp~~~~~~~~--e~g~~~~V~~p~-kv~~~~DH~vp~---~~~~~a~~~~~~r~far~~gi~~f~d~~ 166 (511)
..+|-+. ....|+.=++++++ |.|. +|.=|. ---..+|+.-+- -+++..+.+.++-+.-++.|+.--|...
T Consensus 47 AhIsGvs-Y~tiG~AGL~Fle~lae~ga--rV~VptTlNp~~~Dl~~w~~~gv~e~f~~~q~ri~~A~~~MGv~~t~TCt 123 (403)
T COG1679 47 AHISGVS-YKTIGDAGLEFLEDLAEMGA--RVSVPTTLNPAGVDLERWRELGVDEEFAEKQRRIAKAYESMGVRVTFTCT 123 (403)
T ss_pred ceeccee-ecccchhHhHHHHHHHhcCC--eEEeeeccCcceecccchhhcCCChHHhHHHHHHHHHHHHcCCceeEecc
Confidence 4566654 44445544444432 3453 543332 223455655432 2566666676777777888886533322
Q ss_pred ccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcceEEe---ec----CCee
Q 010403 167 DLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLL---KV----PPTL 239 (511)
Q Consensus 167 ~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~~~l---kv----Petv 239 (511)
+..-.++|.-|=-|.| .|..-+.=-..|+|+ ||.-.|++.+| +.++ +|++.+ -+ =.++
T Consensus 124 --PY~~~~~p~~Gd~~AW-aESsAV~fANSVlGA--rTnReggp~aL---------~aAi-~Gr~P~yG~hl~EnR~~~~ 188 (403)
T COG1679 124 --PYLLGNLPSFGDHLAW-AESSAVSFANSVLGA--RTNREGGPLAL---------AAAI-TGRTPLYGLHLDENRRPTV 188 (403)
T ss_pred --ccccCCCccccceeee-eccchhhhhhhhhhh--hccccCCHHHH---------HHHH-hCCCccccccccccccceE
Confidence 3333445666766665 354433334678887 99999965544 4444 455542 22 2356
Q ss_pred eEEEEeeCCCCCcHHHHHH----HHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceee--cccCchhHH
Q 010403 240 RFVLDGEMPDYLLAKDLIL----QIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNG--VVPADGTTF 313 (511)
Q Consensus 240 ~V~l~G~l~~gV~aKDviL----~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~--i~~~D~~t~ 313 (511)
.|+|+..+... |.-. ++++++-.+|.-| +..+...++-.|--++.-+++..+ ++-....|=
T Consensus 189 ~v~ve~~~~~~----d~~~~~lGy~~G~~~~d~IP~---------~~~~~~p~~d~lKalgAA~atsgavam~HvegvTP 255 (403)
T COG1679 189 IVEVEFPPKED----DSEYGALGYLAGEAAGDGIPY---------FRLALFPSEDELKALGAAMATSGAVAMYHVEGVTP 255 (403)
T ss_pred EEEEecCCCcc----hhhhHHHHHHHHHhccCCCCe---------eccCCCCCHHHHHHHHHHHhhcCceeEEEecCCCc
Confidence 78888776654 4333 3444444444433 333333333333333344444333 444444433
Q ss_pred HHhhhcCCCCCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHH
Q 010403 314 KYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVF 393 (511)
Q Consensus 314 ~yl~~r~~~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL 393 (511)
+|-+ . +-..-.+.|+|+..++. +...-.+.+..++|.++|| |---+++.++..|++|
T Consensus 256 E~~~---------~---~~~d~~e~i~i~~~d~~----------da~~~l~~~~~epdli~iG-cPHaS~~E~~~la~~l 312 (403)
T COG1679 256 EARA---------L---AFGDKAEKIEIEREDID----------DAWERLNTADGEPDLIALG-CPHASLEELRRLAELL 312 (403)
T ss_pred cccc---------c---cccccCceeeeeHHHHH----------HHHHHhhcCCCCCCEEEeC-CCCCCHHHHHHHHHHH
Confidence 3210 0 01111234466665542 3333334555689999998 7777899999999999
Q ss_pred HhcCCcceeeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCC
Q 010403 394 LASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGG 453 (511)
Q Consensus 394 ~~~G~kv~v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~ 453 (511)
+++++..+++++|+ .|+.|+.++.++ |+.+.++++|..+ . |.+|+--
T Consensus 313 ~~r~~~~~~~~~V~-~sr~v~~~a~~~--------G~~~~le~~g~~v-v---~DtC~vV 359 (403)
T COG1679 313 KGRKRPAGVPLYVT-TSRAVYAQARKE--------GYLAKLEELGVKV-V---SDTCMVV 359 (403)
T ss_pred hccCCCCCCCEEEE-cCHHHHHHHhhh--------hhHHHHHHcCCEE-e---cCceeEE
Confidence 95544466888776 699999999886 4799999999998 3 3568753
No 39
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=93.21 E-value=2.7 Score=45.40 Aligned_cols=296 Identities=16% Similarity=0.169 Sum_probs=150.1
Q ss_pred eEEEeeeEEEecCCChhHHHHHHHH--HhCCCCcccCCC-cEEEEecCC--CCCCcHHHHHHHHHHHHHHHHcCcceeec
Q 010403 90 NVWVNVDILMTHDVCGPGSFGIFKK--EFGENAKVWDRE-KIVIIPDHY--IFTSDERANRNVDILRDFCMEQNIKYFYD 164 (511)
Q Consensus 90 ~v~v~vD~v~~hD~tgp~~~~~~~~--e~g~~~~V~~p~-kv~~~~DH~--vp~~~~~~a~~~~~~r~far~~gi~~f~d 164 (511)
+-.+.+|-+. +-..|+.-++++++ +.| .+|.=|. ---..+|+. -..-|+...+.+.++.+.-++.|+.--|.
T Consensus 34 I~~ahisGvs-y~tiG~agl~f~e~l~~~g--akv~VpTTlNp~~~D~~w~~~gvd~~f~~~q~~i~~ay~~mG~~~t~T 110 (389)
T cd01355 34 IKSAHISGVS-YKTIGDAGLEFLERLADQG--AKVAVPTTLNPISMDLHWRELGVDEEFAEKQARLVKAYKAMGVDPTFT 110 (389)
T ss_pred ccceEEccee-ecccchhhHHHHHHHHhCC--CeEeecCccCCcccCcchhhcCCCHHHHHHHHHHHHHHHHcCCccccc
Confidence 4445566654 33556655555544 455 3332221 111233443 01235567777888888889999876554
Q ss_pred ccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHHhcceEE--------eecC
Q 010403 165 IKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVL--------LKVP 236 (511)
Q Consensus 165 ~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tg~~~--------lkvP 236 (511)
.. +.+--++|..|=-+-| .|..-+-=-..|+|+ .|...|+ -++++.++ ||++. =|+|
T Consensus 111 Ct--PY~~~~~P~~Ge~iAW-aESnAV~yANSVlGA--RTnregg---------~~aLaaAi-tGr~P~~GlhldEnR~~ 175 (389)
T cd01355 111 CT--PYQLENLPKKGEHIAW-AESSAVVYANSVLGA--RTNREGG---------PSALAAAI-TGRTPEYGVHLDENRKA 175 (389)
T ss_pred cc--CccCCCCCCCCCeeeE-ecccceeeeeccccc--cccCCCC---------HHHHHHHH-hCCCCccccccccCcCC
Confidence 32 2222224555544443 344322223567777 6777774 44555544 56554 2444
Q ss_pred CeeeEEEEeeCCCCCcHHHHHHHHHHHh-h--ccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecccCchhHH
Q 010403 237 PTLRFVLDGEMPDYLLAKDLILQIIGEI-S--VAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTF 313 (511)
Q Consensus 237 etv~V~l~G~l~~gV~aKDviL~li~~l-~--~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~ 313 (511)
.. .|+++..... .|.---++|-+ | .....- =|.|-. ...+.|+.-.||--..=.|+.. +|-....|=
T Consensus 176 ~~-~v~v~~~~~~----d~~~~~~LG~~iG~~~~~~IP---~i~gl~-~~p~~d~LKalgAA~Atsgs~a-m~Hi~gvTP 245 (389)
T cd01355 176 RL-IVEVEAAEPL----DDSDYGALGYLVGKIAGDRIP---VITGLD-ARPSEDELKALGAAMATSGSVA-MFHIVGVTP 245 (389)
T ss_pred eE-EEEeccCCCc----cccchhHHHHhhccccCCCCC---eeecCC-CCCCHHHHHHHhHHHhhcccce-eEEEeCCCC
Confidence 44 4888743321 44444444322 1 111111 122221 1234444444433322222221 332221110
Q ss_pred HHhhhcCCCCCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHHHHHHHHHH
Q 010403 314 KYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVF 393 (511)
Q Consensus 314 ~yl~~r~~~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eDl~~AA~iL 393 (511)
++... ...-.+.++|+-++|+-.... .. -.+.++|.++|| |=--+++.++.-|++|
T Consensus 246 ---------E~~~~----~~~~~e~i~i~~~dl~~~~~~---------~~-~~~~~~dlv~lG-cPH~Sl~E~~~la~ll 301 (389)
T cd01355 246 ---------EAPTL----GLDAAETVELTRADLDEAREN---------LN-ADGSEPDLVVLG-CPHASLEELRKLADLL 301 (389)
T ss_pred ---------CCccc----CCCcceEEEecHHHHHHHHHh---------hc-CcccCCCEEEec-CCCCCHHHHHHHHHHh
Confidence 01111 111224677775444221110 00 111269999995 7788899999999999
Q ss_pred HhcCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccC
Q 010403 394 LASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLG 452 (511)
Q Consensus 394 ~~~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G 452 (511)
+ |++.+ ++++|. .++.|+ +.+. |+.+.++++|+++ ..-+|- |+-
T Consensus 302 ~--g~~~~~~~~~~v~-t~r~v~--a~~~--------g~~~~ie~~G~~i-~~DtC~-~v~ 347 (389)
T cd01355 302 A--GRRVAPSVPLYVT-TSRAVY--AKRM--------GYVDVIEKLGARV-LTDTCM-VVS 347 (389)
T ss_pred c--CCccCCCCCEEEE-ccHHHH--Hhhc--------cHHHHHHHcCCEE-Eeeecc-eee
Confidence 9 76554 677665 577787 4443 5899999999999 455554 553
No 40
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=42.77 E-value=1e+02 Score=33.60 Aligned_cols=79 Identities=20% Similarity=0.309 Sum_probs=48.8
Q ss_pred eeeeeEEEecCCCCCh--HHHHHHHHHHHhcCCcceeeEEEecCcHHH-HHHHhcCCCCCC---CCchHHHHHHHcCccc
Q 010403 368 VKIDRVYIGSCTGGKT--EDFLAAAKVFLASGKKVKVPTFLVPATQKV-WMDVYTLPVPGS---GGKTCSQIFEEAGCDT 441 (511)
Q Consensus 368 ~~Id~a~IGSCTngr~--eDl~~AA~iL~~~G~kv~v~~~V~PaS~~V-~~~a~~~g~~g~---~~~g~~~~f~~AGa~i 441 (511)
++|.++-|-.|+=-.+ -.|.-+ +-|.+.|.||.|++.+-|.+-.. |.. .|++-. ...-+.+.|++.|++.
T Consensus 32 v~I~~ahisGvsy~tiG~agl~f~-e~l~~~gakv~VpTTlNp~~~D~~w~~---~gvd~~f~~~q~~i~~ay~~mG~~~ 107 (389)
T cd01355 32 IDIKSAHISGVSYKTIGDAGLEFL-ERLADQGAKVAVPTTLNPISMDLHWRE---LGVDEEFAEKQARLVKAYKAMGVDP 107 (389)
T ss_pred ccccceEEcceeecccchhhHHHH-HHHHhCCCeEeecCccCCcccCcchhh---cCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 4778888888877222 344333 33435688899999999998532 221 111000 0012678899999985
Q ss_pred cCCCCCccccC
Q 010403 442 PASPSCGACLG 452 (511)
Q Consensus 442 ~~~pgCg~C~G 452 (511)
..+|.|=.-
T Consensus 108 --t~TCtPY~~ 116 (389)
T cd01355 108 --TFTCTPYQL 116 (389)
T ss_pred --cccccCccC
Confidence 699998843
No 41
>PRK15447 putative protease; Provisional
Probab=32.03 E-value=83 Score=32.60 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=49.8
Q ss_pred cccceeeeeEEEec--CC---CCChHHHHHHHHHHHhcCCccee--eEEE-ecCcHHHHHHHhcCCCCC--CCCchHHHH
Q 010403 364 ECKDVKIDRVYIGS--CT---GGKTEDFLAAAKVFLASGKKVKV--PTFL-VPATQKVWMDVYTLPVPG--SGGKTCSQI 433 (511)
Q Consensus 364 e~~~~~Id~a~IGS--CT---ngr~eDl~~AA~iL~~~G~kv~v--~~~V-~PaS~~V~~~a~~~g~~g--~~~~g~~~~ 433 (511)
.++...+|.||+|- |. |=+.+|+..+.+.+++.|+||-+ +.++ .+.-.+-+.+.++.+..+ .+..|.+..
T Consensus 23 ~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~g~l~~ 102 (301)
T PRK15447 23 RAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDLGAVRL 102 (301)
T ss_pred HHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCHHHHHH
Confidence 44455799999992 21 56789999999999988988863 3333 355545555555654322 112456666
Q ss_pred HHHcCccc
Q 010403 434 FEEAGCDT 441 (511)
Q Consensus 434 f~~AGa~i 441 (511)
+.+.|..+
T Consensus 103 ~~e~~~~l 110 (301)
T PRK15447 103 LAERGLPF 110 (301)
T ss_pred HHhcCCCE
Confidence 77666544
No 42
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=30.04 E-value=3.1e+02 Score=30.05 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=69.1
Q ss_pred eeeeeEEEecCCCC-ChHHHHHHHHHHHhcCCcceeeEEEecCcHHH--HHHHhcCCCCCC---CCchHHHHHHHcCccc
Q 010403 368 VKIDRVYIGSCTGG-KTEDFLAAAKVFLASGKKVKVPTFLVPATQKV--WMDVYTLPVPGS---GGKTCSQIFEEAGCDT 441 (511)
Q Consensus 368 ~~Id~a~IGSCTng-r~eDl~~AA~iL~~~G~kv~v~~~V~PaS~~V--~~~a~~~g~~g~---~~~g~~~~f~~AGa~i 441 (511)
++|.+|-|-+|+-. --..|.-+-++++ .|-|+.|++.+-|.+-+. |.+. +++-. ..+-+.+.|.+.|+..
T Consensus 39 V~I~~aHi~g~~y~iG~~gl~f~e~l~~-~ga~v~VptT~Np~~~D~~~~~~~---~~~~~~~~~q~~i~~a~~~mG~~~ 114 (400)
T PF04412_consen 39 VPITSAHISGVSYKIGDAGLEFLEDLAD-MGARVRVPTTLNPIGMDLERWREL---GVDEEFAEKQKRIIDAYRKMGAQP 114 (400)
T ss_pred eeeeceEEcceecccCchhhHHHHHHHh-CCCCEEecCccCcceeccccHhhc---CCCHHHHHHHHHHHHHHHHcCCcc
Confidence 58889999989864 2235555445443 578999999999987654 3221 11000 0012678899999985
Q ss_pred cCCCCCccccCCCCCcccCCCCCcEEE--EecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCC
Q 010403 442 PASPSCGACLGGPKDTYARMNEPMVCV--STTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVT 504 (511)
Q Consensus 442 ~~~pgCg~C~G~~~~~~g~l~~gev~v--sT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~It 504 (511)
..+|.|=+-.+ .+..||.+. -|+.=.|-+=+ .+++.-==+-+++-++||+|++.
T Consensus 115 --t~TCtPY~~~~-----~P~~Ge~iAW~ESsAV~yaNSV--lGARTNreg~~~al~aAitGrtP 170 (400)
T PF04412_consen 115 --TFTCTPYLLGN-----RPRFGEHIAWSESSAVIYANSV--LGARTNREGGPSALAAAITGRTP 170 (400)
T ss_pred --cccCcCccCCC-----CCCCCCEEEEecccceeeeecc--cchhcCCCCcHHHHHHHHhCCCC
Confidence 58998877432 233454321 11111111111 00111001346788899999975
No 43
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=29.02 E-value=3.1e+02 Score=30.59 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=34.7
Q ss_pred EEEEEECCCceeeeecCCCcccccccccccceeeeeEEEecCCCCChHH
Q 010403 337 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTED 385 (511)
Q Consensus 337 ~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~~~Id~a~IGSCTngr~eD 385 (511)
--+-||+.++-|.|..-.-|.+.-.+.=.....|-.+=|||...||.++
T Consensus 346 H~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~ 394 (460)
T PRK13237 346 HAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPK 394 (460)
T ss_pred eEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCC
Confidence 4567999999988876666666544443344566677799999988554
No 44
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=28.20 E-value=25 Score=32.24 Aligned_cols=36 Identities=36% Similarity=0.551 Sum_probs=28.0
Q ss_pred eeEEEecCCCCChHHHHHHHHHHHhcCCcce---------eeEEEecCc
Q 010403 371 DRVYIGSCTGGKTEDFLAAAKVFLASGKKVK---------VPTFLVPAT 410 (511)
Q Consensus 371 d~a~IGSCTngr~eDl~~AA~iL~~~G~kv~---------v~~~V~PaS 410 (511)
|.=|.||||=- +||+.||.||. +-||. ..++++|+-
T Consensus 18 ~L~Y~GSitID--~dlldaagile--~EkV~I~N~nNGaRf~TYvI~g~ 62 (126)
T COG0853 18 DLNYVGSITID--EDLLDAAGILE--NEKVDIVNVNNGARFSTYVIAGE 62 (126)
T ss_pred ccceEEeEEEC--HHHHhhcCCCC--CceEEEEECCCCcEEEEEEEEcc
Confidence 34599999975 89999999999 77774 347787754
No 45
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=27.84 E-value=21 Score=32.14 Aligned_cols=35 Identities=37% Similarity=0.469 Sum_probs=27.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHHhcCCcce---------eeEEEecCc
Q 010403 372 RVYIGSCTGGKTEDFLAAAKVFLASGKKVK---------VPTFLVPAT 410 (511)
Q Consensus 372 ~a~IGSCTngr~eDl~~AA~iL~~~G~kv~---------v~~~V~PaS 410 (511)
.=|.||||=- +||+.||.|+. +-||. ..++++|+-
T Consensus 19 L~YeGSitID--~~Ll~aagi~~--~E~V~I~Nv~NG~Rf~TYvI~g~ 62 (111)
T cd06919 19 LNYEGSITID--EDLLEAAGILP--YEKVLVVNVNNGARFETYVIPGE 62 (111)
T ss_pred cccceeEEEC--HHHHHhcCCCC--CCEEEEEECCCCcEEEEEEEEcC
Confidence 4589999976 79999999999 77774 347787744
No 46
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=24.02 E-value=28 Score=32.09 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=27.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHHhcCCcce---------eeEEEecCc
Q 010403 372 RVYIGSCTGGKTEDFLAAAKVFLASGKKVK---------VPTFLVPAT 410 (511)
Q Consensus 372 ~a~IGSCTngr~eDl~~AA~iL~~~G~kv~---------v~~~V~PaS 410 (511)
.=|.||||=- +||+.||.||. +-+|. ..++++|+-
T Consensus 20 L~Y~GSitID--~~Ll~aagi~p--~E~V~V~Nv~NG~Rf~TYvI~g~ 63 (126)
T PRK05449 20 LNYEGSITID--EDLLDAAGILE--NEKVQIVNVNNGARFETYVIAGE 63 (126)
T ss_pred cccceeEEEC--HHHHHhcCCCC--CCEEEEEECCCCcEEEEEEEEcC
Confidence 4589999975 79999999999 77774 347788854
No 47
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=23.95 E-value=1.2e+02 Score=34.78 Aligned_cols=35 Identities=29% Similarity=0.223 Sum_probs=23.4
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccC
Q 010403 247 MPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVER 283 (511)
Q Consensus 247 l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~ 283 (511)
.|-.+--+|+.-.+-..+...| +.-+||.=.++.+
T Consensus 55 ~p~h~hl~~l~~~vk~~i~~aG--g~p~ef~t~~v~D 89 (575)
T COG0129 55 VPGHQHLKDLAQLVKEGIREAG--GVPVEFGTIAVCD 89 (575)
T ss_pred cCchhhHHHHHHHHHHHHHHcC--CceeEeCCCCccC
Confidence 3555666777777777777777 5578887555533
No 48
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=23.10 E-value=30 Score=31.91 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=27.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHHhcCCcce---------eeEEEecCc
Q 010403 372 RVYIGSCTGGKTEDFLAAAKVFLASGKKVK---------VPTFLVPAT 410 (511)
Q Consensus 372 ~a~IGSCTngr~eDl~~AA~iL~~~G~kv~---------v~~~V~PaS 410 (511)
.=|.||||=- +||+.||.||. +-+|. ..++++|+-
T Consensus 20 L~Y~GSItID--~~Lm~aagi~p--~E~V~V~Nv~NG~Rf~TYvI~G~ 63 (126)
T TIGR00223 20 LNYEGSITID--EDLLDAAGILE--NEKVDIVNVNNGKRFSTYAIAGK 63 (126)
T ss_pred cccceeEEEC--HHHHHhcCCCC--CCEEEEEECCCCcEEEEEEEEcC
Confidence 4589999975 89999999999 77774 347788754
Done!